Query psy15140
Match_columns 227
No_of_seqs 227 out of 679
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:39:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1725|consensus 100.0 1.2E-40 2.7E-45 280.1 12.1 154 52-206 7-161 (186)
2 PF03134 TB2_DP1_HVA22: TB2/DP 100.0 2.5E-29 5.3E-34 190.7 10.4 94 98-192 1-94 (94)
3 KOG1726|consensus 100.0 5.3E-29 1.2E-33 214.9 12.5 119 103-222 3-123 (225)
4 COG5052 YOP1 Protein involved 100.0 3.3E-28 7.1E-33 202.1 16.4 167 49-221 9-178 (186)
5 KOG1725|consensus 99.6 1.7E-15 3.8E-20 127.9 10.1 108 7-123 7-123 (186)
6 KOG1726|consensus 97.6 0.0012 2.7E-08 57.7 12.3 146 51-206 4-174 (225)
7 COG5052 YOP1 Protein involved 97.5 0.0013 2.9E-08 55.5 10.1 97 21-122 21-123 (186)
8 PF03134 TB2_DP1_HVA22: TB2/DP 97.0 0.0016 3.4E-08 49.0 5.7 66 48-122 4-69 (94)
9 PRK15132 tyrosine transporter 58.3 1.7E+02 0.0037 27.8 12.5 141 7-160 242-402 (403)
10 PF06570 DUF1129: Protein of u 58.0 1.2E+02 0.0025 25.8 13.2 51 4-59 7-66 (206)
11 PF02453 Reticulon: Reticulon; 41.7 8.6 0.00019 30.9 0.0 43 154-211 126-168 (169)
12 TIGR02849 spore_III_AD stage I 37.1 1.9E+02 0.0042 22.3 6.9 44 38-89 4-47 (101)
13 PF07178 TraL: TraL protein; 32.1 2E+02 0.0043 21.4 6.2 31 113-143 47-77 (95)
14 PRK13707 conjugal transfer pil 27.7 2.3E+02 0.005 21.7 5.9 28 115-142 55-82 (101)
15 KOG4686|consensus 23.3 4.8E+02 0.01 24.8 8.0 105 7-115 236-368 (459)
16 PF14117 DUF4287: Domain of un 23.0 84 0.0018 22.1 2.4 21 68-88 4-24 (61)
17 COG2981 CysZ Uncharacterized p 22.8 5E+02 0.011 23.3 7.8 17 126-142 60-78 (250)
18 PF14069 SpoVIF: Stage VI spor 22.8 83 0.0018 23.3 2.5 23 25-47 1-23 (79)
19 PF07022 Phage_CI_repr: Bacter 22.0 2.1E+02 0.0046 19.6 4.4 61 23-87 1-61 (66)
20 cd01812 BAG1_N Ubiquitin-like 20.6 84 0.0018 21.3 2.1 20 17-36 18-37 (71)
21 KOG4387|consensus 20.5 60 0.0013 27.8 1.5 24 21-44 121-144 (191)
22 PF05584 Sulfolobus_pRN: Sulfo 20.3 1E+02 0.0023 22.4 2.5 22 68-89 19-40 (72)
23 KOG2856|consensus 20.3 57 0.0012 31.1 1.4 24 10-33 126-149 (472)
No 1
>KOG1725|consensus
Probab=100.00 E-value=1.2e-40 Score=280.06 Aligned_cols=154 Identities=46% Similarity=0.880 Sum_probs=144.3
Q ss_pred HHHHHHhhccCCCChHHH-HHHHHHHhCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhHhhHHHHHHHHhcCCchhh
Q psy15140 52 RENLNQALNDESKPWAPF-LTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAIESENKQDD 130 (227)
Q Consensus 52 ~~~i~~~L~~~~~~~~~~-l~~iE~~tgv~~~~~~~~~v~v~~l~l~~g~~a~ll~~~ig~~yPay~s~kal~~~~~~d~ 130 (227)
.+.++.+|.+.+++++.. +..+|++||++|++++.+.++++++|+++|.+++++||++|++||+|.|++++|+++++||
T Consensus 7 ~~~i~~~l~~~~~~~~~~~f~~~E~~tgv~r~~~~~g~~~l~~v~l~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD 86 (186)
T KOG1725|consen 7 KSDIKSQLKECMKPWTEGIFDQLEKFTGVPREYVFAGAILLLAVYLLFGSGGPLLCNLIGFLYPAYASVKAIESPSKDDD 86 (186)
T ss_pred hhhHHHHHHhcccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhCCCCcch
Confidence 567777777765545555 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhHhhhcchhhHHHHHHHHHhhcCCCcchHHHHHhHhhccccccchhhHHHHHHHH
Q psy15140 131 TKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKA 206 (227)
Q Consensus 131 ~~WL~YWvv~~~~~~~E~~~~~il~~iPfY~~~K~~fllwL~~P~~~~GA~~iY~~~i~P~l~~~e~~ID~~i~~~ 206 (227)
++||+||++||+++++|.+++.+++|+|+||++|++|++||++|++ +||.++|++++||++.+|+.++|+..+.-
T Consensus 87 ~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~lP~~-~Ga~~iY~~~vrp~~~~~~~~~~~~~~~~ 161 (186)
T KOG1725|consen 87 TQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLVLPQF-NGAAIIYNHIVRPFFLKHSREIDDIEDAN 161 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhccCC-CCceeeechhhhhhhhhhhhhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999988 99999999999999999999999887643
No 2
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.96 E-value=2.5e-29 Score=190.75 Aligned_cols=94 Identities=48% Similarity=1.038 Sum_probs=91.3
Q ss_pred HhhhhHHHHHHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHhHHHHHhHhhhcchhhHHHHHHHHHhhcCCCc
Q psy15140 98 FGYAAQVICNCIGFLYPAYKSMKAIESENKQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMEN 177 (227)
Q Consensus 98 ~g~~a~ll~~~ig~~yPay~s~kal~~~~~~d~~~WL~YWvv~~~~~~~E~~~~~il~~iPfY~~~K~~fllwL~~P~~~ 177 (227)
+|+.++++|+++|++||+|+|+|+++++++++.++||+||+++|+++++|.+++.+++|+|+|+++|++|++||.+|++
T Consensus 1 ~~~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YWiv~~~~~~~e~~~~~~l~~iP~y~~~K~~~~~wL~~p~~- 79 (94)
T PF03134_consen 1 FGFIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYWIVYGLFTLFESFLDFILSWIPFYYEFKLLFLVWLQLPQF- 79 (94)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHcCCC-
Confidence 4788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhHhhcccc
Q psy15140 178 NGSIFIYNRIIRPKF 192 (227)
Q Consensus 178 ~GA~~iY~~~i~P~l 192 (227)
+||+++|+++++|++
T Consensus 80 ~Ga~~iy~~~i~P~~ 94 (94)
T PF03134_consen 80 QGAEYIYDKFIRPFL 94 (94)
T ss_pred CcHHHHHHHHccccC
Confidence 999999999999975
No 3
>KOG1726|consensus
Probab=99.96 E-value=5.3e-29 Score=214.90 Aligned_cols=119 Identities=31% Similarity=0.700 Sum_probs=112.4
Q ss_pred HHHHHHHHhHhhHHHHHHHHhc--CCchhhhhHHHHHHHHHHHHHhHHHHHhHhhhcchhhHHHHHHHHHhhcCCCcchH
Q psy15140 103 QVICNCIGFLYPAYKSMKAIES--ENKQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMENNGS 180 (227)
Q Consensus 103 ~ll~~~ig~~yPay~s~kal~~--~~~~d~~~WL~YWvv~~~~~~~E~~~~~il~~iPfY~~~K~~fllwL~~P~~~~GA 180 (227)
+++.+++|..||||+|+|++++ ++-++...|++||||||+++++|.+.|.+++|+|||+++|++|++||..|.+ +|+
T Consensus 3 ~~lv~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~lsw~P~Y~e~Kl~fv~wL~~p~t-~G~ 81 (225)
T KOG1726|consen 3 RLLVLVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLSWFPFYSEFKLAFVIWLLSPAT-KGA 81 (225)
T ss_pred ehHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccc-Ccc
Confidence 5677889999999999999999 5567899999999999999999999999999999999999999999999999 999
Q ss_pred HHHHhHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15140 181 IFIYNRIIRPKFLEHESFINSAFTKATDSAVKFATAKILEAE 222 (227)
Q Consensus 181 ~~iY~~~i~P~l~~~e~~ID~~i~~~~~~~~~~~~~~~~~~~ 222 (227)
.++|+.+++|++.+||++||+.+.++++++.+.+..+.+.+.
T Consensus 82 ~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a~~~~~r~l 123 (225)
T KOG1726|consen 82 SYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAAVSILKRAL 123 (225)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988877663
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=99.96 E-value=3.3e-28 Score=202.11 Aligned_cols=167 Identities=30% Similarity=0.458 Sum_probs=144.2
Q ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhhhhH--HHHHHHHhHhhHHHHHHHHhcCC
Q psy15140 49 SEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQ--VICNCIGFLYPAYKSMKAIESEN 126 (227)
Q Consensus 49 ~~~~~~i~~~L~~~~~~~~~~l~~iE~~tgv~~~~~~~~~v~v~~l~l~~g~~a~--ll~~~ig~~yPay~s~kal~~~~ 126 (227)
+..+..+++.+. +.|.++.+|+.+|+++.|.+.+.++++++.++...++. +++|..|+..|++.+.+++++.+
T Consensus 9 s~aM~~l~~t~~-----~~piL~~ie~~~~~~k~Y~~~~asf~~l~~lfs~vlG~g~ilt~~~~~~lP~~~~l~a~~~~n 83 (186)
T COG5052 9 SVAMLVLDNTLQ-----AFPILREIENLYNRYKKYFMAGASFLYLLNLFSTVLGFGLILTNVAGFSLPAQLSLVAFYTLN 83 (186)
T ss_pred HHHHHHHHHHHH-----hhHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHccHHHHHHHHHcCC
Confidence 334455555444 67899999999999999999999988777665544444 89999999999999999999999
Q ss_pred chhhhhHHHHHHHHHHHHHhHHHHHhHhhhcchhhHHHHHHHHHhhcCCCcchHHHHHhHhhccccccchhh-HHHHHHH
Q psy15140 127 KQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMENNGSIFIYNRIIRPKFLEHESF-INSAFTK 205 (227)
Q Consensus 127 ~~d~~~WL~YWvv~~~~~~~E~~~~~il~~iPfY~~~K~~fllwL~~P~~~~GA~~iY~~~i~P~l~~~e~~-ID~~i~~ 205 (227)
+.|++|||+||+|||+.+++|.++.-+++|+|+||..|.+|++|+..|++ +||..||+++++|+.++|.-+ ||+.+.+
T Consensus 84 ~~dd~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vFllw~~~prt-~GA~~IY~~~i~p~~s~~~~~~IektV~~ 162 (186)
T COG5052 84 FMDDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLLPRT-EGARIIYDDIIAPDVSDHGFRTIEKTVKN 162 (186)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc-CceeeeHHhhccccccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999876 8888888
Q ss_pred HHHHHHHHHHHHHHHh
Q psy15140 206 ATDSAVKFATAKILEA 221 (227)
Q Consensus 206 ~~~~~~~~~~~~~~~~ 221 (227)
..+.......++.+..
T Consensus 163 ~~~A~a~~aSs~~~~t 178 (186)
T COG5052 163 GTKASAAVASSLEKKT 178 (186)
T ss_pred hccccHHHHHHhhhcc
Confidence 8766555555554333
No 5
>KOG1725|consensus
Probab=99.63 E-value=1.7e-15 Score=127.91 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=97.4
Q ss_pred HHHHHHhhcCCCCCchhH-HHHHHHHhCCCceeehhhhhHhH--------HHHHHHHHHHhhccCCCChHHHHHHHHHHh
Q psy15140 7 RENLNQALNDESKPWAPF-LTLAEQKTGVKRIYIVLDSGTMT--------ISEIRENLNQALNDESKPWAPFLTLAEQKT 77 (227)
Q Consensus 7 ~~~~~~~l~~~~~~~t~~-~~~~e~ktgv~r~~i~~~~~~~~--------~~~~~~~i~~~L~~~~~~~~~~l~~iE~~t 77 (227)
++++.+.|+|.++|||+. |+.+|++||++|.|+++|.+++. +..++|++.+++|| ++.++++||+.+
T Consensus 7 ~~~i~~~l~~~~~~~~~~~f~~~E~~tgv~r~~~~~g~~~l~~v~l~~g~~~~l~cn~ig~~yP----~y~Sv~aIes~~ 82 (186)
T KOG1725|consen 7 KSDIKSQLKECMKPWTEGIFDQLEKFTGVPREYVFAGAILLLAVYLLFGSGGPLLCNLIGFLYP----AYASVKAIESPS 82 (186)
T ss_pred hhhHHHHHHhcccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH----HHHHHHhhhCCC
Confidence 789999999999999999 99999999999999999975543 88999999999998 999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhHhhHHHHHHHHh
Q psy15140 78 GVKRIYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAIE 123 (227)
Q Consensus 78 gv~~~~~~~~~v~v~~l~l~~g~~a~ll~~~ig~~yPay~s~kal~ 123 (227)
+.|+++|+++|+ +++++.++.+ .+..+..++|.|+-.|++-
T Consensus 83 k~dD~~wL~YWi-vys~lslie~----~~~~il~~iP~y~~~K~~f 123 (186)
T KOG1725|consen 83 KDDDTQWLTYWI-VYSILSLVEF----FSVAILSWIPFYWYAKLIF 123 (186)
T ss_pred CcchHHHHHHHH-HHHHHHHHHH----HHHHHHHhchHHHHHHHHH
Confidence 999999999999 8888888854 4445778899999998874
No 6
>KOG1726|consensus
Probab=97.61 E-value=0.0012 Score=57.68 Aligned_cols=146 Identities=10% Similarity=-0.005 Sum_probs=118.0
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHHHHhhhhHHHHHHHHhHhhHHHHHHHHh-----
Q psy15140 51 IRENLNQALNDESKPWAPFLTLAEQKTGVKR--IYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAIE----- 123 (227)
Q Consensus 51 ~~~~i~~~L~~~~~~~~~~l~~iE~~tgv~~--~~~~~~~v~v~~l~l~~g~~a~ll~~~ig~~yPay~s~kal~----- 123 (227)
++-.+-+.+|+ ++.+.+.+++.-+-.+ ..|..+|+ +++++++++..+++ +..++|.|.-+|.+-
T Consensus 4 ~lv~v~G~~yP----Ay~tyKavk~~~~~i~el~~W~~YWI-v~A~~t~~e~~~d~----~lsw~P~Y~e~Kl~fv~wL~ 74 (225)
T KOG1726|consen 4 LLVLVFGYAYP----AYATYKAVKSNRKDIRELLRWMMYWI-VFAALTVFETLTDF----LLSWFPFYSEFKLAFVIWLL 74 (225)
T ss_pred hHHHHHHHHhH----HHHHHHHHHhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHhhcc
Confidence 34456677787 9999999998555444 56789999 89999999766655 555899999998872
Q ss_pred ---cC---------------CchhhhhHHHHHHHHHHHHHhHHHHHhHhhhcchhhHHHHHHHHHhhcCCCcchHHHHHh
Q psy15140 124 ---SE---------------NKQDDTKWLTYWVVFALFSIVEYPAEFILSIFPFYWLIKCIFFIWCFAPMENNGSIFIYN 185 (227)
Q Consensus 124 ---~~---------------~~~d~~~WL~YWvv~~~~~~~E~~~~~il~~iPfY~~~K~~fllwL~~P~~~~GA~~iY~ 185 (227)
+. ..+++..-+.+|....++..++.+..-.++|-+.|-.-+..+..|...|+. +++...+.
T Consensus 75 ~p~t~G~~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~-~~~~~~~~ 153 (225)
T KOG1726|consen 75 SPATKGASYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRL-QRSSSDQD 153 (225)
T ss_pred ccccCccHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cchhhhhh
Confidence 11 125567789999999999999999988899999999999999999999999 99999999
Q ss_pred HhhccccccchhhHHHHHHHH
Q psy15140 186 RIIRPKFLEHESFINSAFTKA 206 (227)
Q Consensus 186 ~~i~P~l~~~e~~ID~~i~~~ 206 (227)
....|....+...+-+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~ 174 (225)
T KOG1726|consen 154 LTTIPEESGKKAPDLDVLENE 174 (225)
T ss_pred hhcCccccccccCCcccchhh
Confidence 999999887766665555443
No 7
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.0013 Score=55.52 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=74.5
Q ss_pred chhHHHHHHHHhCCCceeehhhhhHhHHHHHHHHHHHhhc--cC----CCChHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy15140 21 WAPFLTLAEQKTGVKRIYIVLDSGTMTISEIRENLNQALN--DE----SKPWAPFLTLAEQKTGVKRIYIVLGLIGFLAL 94 (227)
Q Consensus 21 ~t~~~~~~e~ktgv~r~~i~~~~~~~~~~~~~~~i~~~L~--~~----~~~~~~~l~~iE~~tgv~~~~~~~~~v~v~~l 94 (227)
.-+.+..+|.++++.|.|+++|.+......+..++.++.+ .. .-|..-.+.+++..+..|+.|++.+|. +++.
T Consensus 21 ~~piL~~ie~~~~~~k~Y~~~~asf~~l~~lfs~vlG~g~ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywm-V~~~ 99 (186)
T COG5052 21 AFPILREIENLYNRYKKYFMAGASFLYLLNLFSTVLGFGLILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWM-VFGF 99 (186)
T ss_pred hhHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHH-HHHH
Confidence 4568899999999999999999887665555555555521 10 013778999999999999999999999 7777
Q ss_pred HHHHhhhhHHHHHHHHhHhhHHHHHHHH
Q psy15140 95 YLVFGYAAQVICNCIGFLYPAYKSMKAI 122 (227)
Q Consensus 95 ~l~~g~~a~ll~~~ig~~yPay~s~kal 122 (227)
...... .++.+....|.|++.|..
T Consensus 100 lsaie~----~s~~il~~vP~Y~~~K~v 123 (186)
T COG5052 100 LSAIEK----YSGAILSKVPFYWTLKNV 123 (186)
T ss_pred HHHHHH----HHHHHHHHhhHHHHHHHH
Confidence 776643 344577889999999876
No 8
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=97.04 E-value=0.0016 Score=49.05 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhccCCCChHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhHhhHHHHHHHH
Q psy15140 48 ISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLALYLVFGYAAQVICNCIGFLYPAYKSMKAI 122 (227)
Q Consensus 48 ~~~~~~~i~~~L~~~~~~~~~~l~~iE~~tgv~~~~~~~~~v~v~~l~l~~g~~a~ll~~~ig~~yPay~s~kal 122 (227)
..++.+++.+.++| ++.+++.+|++.+.+..+|+.+|+ +++++..++...+ .+..+.|.|..+|++
T Consensus 4 ~~~~l~~~i~~~yP----~~~s~kal~~~~~~~~~~wL~YWi-v~~~~~~~e~~~~----~~l~~iP~y~~~K~~ 69 (94)
T PF03134_consen 4 IARLLCNLIGILYP----AYKSFKALKSKDKKDLKQWLTYWI-VYGLFTLFESFLD----FILSWIPFYYEFKLL 69 (94)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHccCchHHHHHHH
Confidence 56789999999998 999999999998889999999999 8888888764433 343478999999876
No 9
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=58.28 E-value=1.7e+02 Score=27.76 Aligned_cols=141 Identities=9% Similarity=0.019 Sum_probs=71.5
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHhCCCceeehhhhhHhH---------HHHHHHHHHHhhccCCCChHHHHHHHHHHh
Q psy15140 7 RENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLDSGTMT---------ISEIRENLNQALNDESKPWAPFLTLAEQKT 77 (227)
Q Consensus 7 ~~~~~~~l~~~~~~~t~~~~~~e~ktgv~r~~i~~~~~~~~---------~~~~~~~i~~~L~~~~~~~~~~l~~iE~~t 77 (227)
++++.....+.. ..+++++.+.++++.+.....+..-+.+ .-.+.+.+.+.+..++ +..
T Consensus 242 ~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~-----------~~~ 309 (403)
T PRK15132 242 STTFMGLLANHA-GLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRN-----------TVG 309 (403)
T ss_pred HHHHHHHHHccC-chHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc-----------ccc
Confidence 344555554554 5888899999988887655444333221 2223333333332211 011
Q ss_pred CCCchhHHHHHHHH-HH-----HHHHHhhhhHHHHHHHHhHhhHHHHHHHHhcCCchhh----hhH-HHHHHHHHHHHHh
Q psy15140 78 GVKRIYIVLGLIGF-LA-----LYLVFGYAAQVICNCIGFLYPAYKSMKAIESENKQDD----TKW-LTYWVVFALFSIV 146 (227)
Q Consensus 78 gv~~~~~~~~~v~v-~~-----l~l~~g~~a~ll~~~ig~~yPay~s~kal~~~~~~d~----~~W-L~YWvv~~~~~~~ 146 (227)
|.-....++..--+ ++ .|+.....+..++.++.++.|++...|.=+.++..+. .++ +..=.++|+..++
T Consensus 310 ~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~ 389 (403)
T PRK15132 310 GRLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIG 389 (403)
T ss_pred CCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHH
Confidence 11111111111111 11 2333333445567888899999999987765422222 233 4444566666666
Q ss_pred HHHHHhHhhhcchh
Q psy15140 147 EYPAEFILSIFPFY 160 (227)
Q Consensus 147 E~~~~~il~~iPfY 160 (227)
-.+.. .+.++|.|
T Consensus 390 ~~~~~-~~~~lp~~ 402 (403)
T PRK15132 390 IQFLI-AAGLLPEV 402 (403)
T ss_pred HHHHH-HhCcCCCC
Confidence 55543 34778876
No 10
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=58.01 E-value=1.2e+02 Score=25.79 Aligned_cols=51 Identities=20% Similarity=0.120 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHH---------HHHhCCCceeehhhhhHhHHHHHHHHHHHhh
Q psy15140 4 SEIRENLNQALNDESKPWAPFLTLA---------EQKTGVKRIYIVLDSGTMTISEIRENLNQAL 59 (227)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~t~~~~~~---------e~ktgv~r~~i~~~~~~~~~~~~~~~i~~~L 59 (227)
|++-+++.+.|++.+++=.|.=+.+ .||+|..-..+|- ..++.++++.+-.
T Consensus 7 ~~y~~~l~~~L~~~~~~e~~~e~~L~eil~~LleaQk~G~tA~~lfG-----~P~~~a~eli~~~ 66 (206)
T PF06570_consen 7 QEYIFDLRKYLRSSGVSEEEIEELLEEILPHLLEAQKKGKTARQLFG-----DPKEYADELIKPL 66 (206)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHcC-----CHHHHHHHHhccc
Confidence 4677778888877765433322222 3678877665553 2444555555433
No 11
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=41.68 E-value=8.6 Score=30.86 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=0.0
Q ss_pred hhhcchhhHHHHHHHHHhhcCCCcchHHHHHhHhhccccccchhhHHHHHHHHHHHHH
Q psy15140 154 LSIFPFYWLIKCIFFIWCFAPMENNGSIFIYNRIIRPKFLEHESFINSAFTKATDSAV 211 (227)
Q Consensus 154 l~~iPfY~~~K~~fllwL~~P~~~~GA~~iY~~~i~P~l~~~e~~ID~~i~~~~~~~~ 211 (227)
.+++++..++-++++.-+..|. .+.+|+++||+.++.++++++
T Consensus 126 g~~~s~~~L~~l~~~~~f~~P~---------------ly~~~~~~Id~~~~~~~~~~~ 168 (169)
T PF02453_consen 126 GSWFSFLTLLYLGVLGAFTVPK---------------LYEKYQEEIDQYVAKVKEKVK 168 (169)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHcCHHHHHHHHHHHHHhhHH---------------HHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555554444443 245799999999998877654
No 12
>TIGR02849 spore_III_AD stage III sporulation protein AD. Members of this family are the uncharacterized protein SpoIIIAD, part of the spoIIIA operon that acts at sporulation stage III as part of a cascade of events leading to endospore formation. Note that the start sites of members of this family as annotated tend to be variable; quite a few members have apparent homologous protein-coding regions continuing upstream of the first available start codon. The length of the alignment has been set to try to detect all valid members of the family, even if annotation of the start site begins too far downstream.
Probab=37.15 E-value=1.9e+02 Score=22.28 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=31.7
Q ss_pred eehhhhhHhHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCCchhHHHHHH
Q psy15140 38 YIVLDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLGLI 89 (227)
Q Consensus 38 ~i~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~l~~iE~~tgv~~~~~~~~~v 89 (227)
++.++.|.+++--...++.. .-+.+++++++.|+|..|+.+.+=
T Consensus 4 ~lsl~agi~If~~~i~kl~~--------ii~~l~~l~~~a~i~~~Yi~~llK 47 (101)
T TIGR02849 4 FLSLIAGIVIFLFVMPKINA--------VVEVIQSLARKAGLDSLYLATVLK 47 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHcCCChHHHHHHHH
Confidence 34556666666666666664 556899999999999999865443
No 13
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=32.14 E-value=2e+02 Score=21.44 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=21.1
Q ss_pred hhHHHHHHHHhcCCchhhhhHHHHHHHHHHH
Q psy15140 113 YPAYKSMKAIESENKQDDTKWLTYWVVFALF 143 (227)
Q Consensus 113 yPay~s~kal~~~~~~d~~~WL~YWvv~~~~ 143 (227)
.-+...++-++....+..-..+.||.--..+
T Consensus 47 ~~~~~~~~k~K~~~~~g~l~h~lYW~~p~~~ 77 (95)
T PF07178_consen 47 IVLWWGYRKFKKGRGRGFLLHLLYWYGPSSL 77 (95)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHcchhh
Confidence 3345556667777777788889999765444
No 14
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=27.67 E-value=2.3e+02 Score=21.70 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCchhhhhHHHHHHHHHH
Q psy15140 115 AYKSMKAIESENKQDDTKWLTYWVVFAL 142 (227)
Q Consensus 115 ay~s~kal~~~~~~d~~~WL~YWvv~~~ 142 (227)
.+..++-++....+..-..+.||..=+.
T Consensus 55 ~~~~~r~lK~g~g~~~l~h~~YW~lP~~ 82 (101)
T PRK13707 55 VWFGIRKLKKGRGSSWLRDLIYWYLPTA 82 (101)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHhcchh
Confidence 4667777887776777788999975443
No 15
>KOG4686|consensus
Probab=23.34 E-value=4.8e+02 Score=24.80 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=61.7
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHHHhCCCceeehhhhhHhH-------------------------HHHHHHHHHHhhcc
Q psy15140 7 RENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLDSGTMT-------------------------ISEIRENLNQALND 61 (227)
Q Consensus 7 ~~~~~~~l~~~~~~~t~~~~~~e~ktgv~r~~i~~~~~~~~-------------------------~~~~~~~i~~~L~~ 61 (227)
-+|.|+.||.++-|..+ +-.-|+|+..|-..=....+ -+.--.+|+..+|-
T Consensus 236 D~rAerilh~e~g~~Ge----~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~ 311 (459)
T KOG4686|consen 236 DDRAERILHLEEGFLGE----EPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYG 311 (459)
T ss_pred hhHHHHHHhhhcCcccC----CcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhh
Confidence 46788888887765544 44457888877654322221 11223455555565
Q ss_pred CCCChHHHHHHHHHHhCCCchhHHHHHHHHHH--HHHHHhhhhHHHHH-HHHhHhhH
Q psy15140 62 ESKPWAPFLTLAEQKTGVKRIYIVLGLIGFLA--LYLVFGYAAQVICN-CIGFLYPA 115 (227)
Q Consensus 62 ~~~~~~~~l~~iE~~tgv~~~~~~~~~v~v~~--l~l~~g~~a~ll~~-~ig~~yPa 115 (227)
-+.+..+.+..|.+++|-+-..++.+.+..+. ..+.|...++..+. ++|..||.
T Consensus 312 Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysl 368 (459)
T KOG4686|consen 312 ISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSL 368 (459)
T ss_pred hhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHH
Confidence 55567889999999999887666666554332 24444444444322 33455554
No 16
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=23.04 E-value=84 Score=22.06 Aligned_cols=21 Identities=24% Similarity=0.099 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCchhHHHHH
Q psy15140 68 PFLTLAEQKTGVKRIYIVLGL 88 (227)
Q Consensus 68 ~~l~~iE~~tgv~~~~~~~~~ 88 (227)
..+..||++||-+...|+-.+
T Consensus 4 sy~~~Ie~kTGk~~~~W~~~~ 24 (61)
T PF14117_consen 4 SYLPNIEKKTGKTLDEWLALA 24 (61)
T ss_pred HHHhHhHHHHCcCHHHHHHHH
Confidence 468889999999999997544
No 17
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=22.82 E-value=5e+02 Score=23.30 Aligned_cols=17 Identities=35% Similarity=0.855 Sum_probs=11.4
Q ss_pred CchhhhhHHHH--HHHHHH
Q psy15140 126 NKQDDTKWLTY--WVVFAL 142 (227)
Q Consensus 126 ~~~d~~~WL~Y--Wvv~~~ 142 (227)
.-+|--+||.| |+..++
T Consensus 60 ~iPdWl~wLs~v~~~la~L 78 (250)
T COG2981 60 GIPDWLGWLSYLLWILAVL 78 (250)
T ss_pred cCccHHHHHHHHHHHHHHH
Confidence 35788899986 555443
No 18
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=22.76 E-value=83 Score=23.25 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCceeehhhhhHhH
Q psy15140 25 LTLAEQKTGVKRIYIVLDSGTMT 47 (227)
Q Consensus 25 ~~~~e~ktgv~r~~i~~~~~~~~ 47 (227)
|+.+|.||||+.--|+-=.+++.
T Consensus 1 f~~i~kKt~V~~~~i~kLA~sv~ 23 (79)
T PF14069_consen 1 FERIKKKTGVNKEDIFKLANSVQ 23 (79)
T ss_pred ChHHHHhcCCCHHHHHHHHHhcc
Confidence 57899999988776665444444
No 19
>PF07022 Phage_CI_repr: Bacteriophage CI repressor helix-turn-helix domain; InterPro: IPR010744 This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2FJR_B.
Probab=22.02 E-value=2.1e+02 Score=19.60 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=30.7
Q ss_pred hHHHHHHHHhCCCceeehhhhhHhHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCCchhHHHH
Q psy15140 23 PFLTLAEQKTGVKRIYIVLDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLG 87 (227)
Q Consensus 23 ~~~~~~e~ktgv~r~~i~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~l~~iE~~tgv~~~~~~~~ 87 (227)
++++++-+.+|++...=+....++.-+.+-++-.+ .+. -| .+.+.++...+|++-+.+++|
T Consensus 1 ~~i~rl~~~~g~~~~~~lA~~lgis~st~s~~~~~--r~~-~P-~~~l~~ia~~~gvsl~WLltG 61 (66)
T PF07022_consen 1 AVIERLKEALGVKSDKELAERLGISKSTLSNNWKK--RGS-IP-AEWLIKIALETGVSLDWLLTG 61 (66)
T ss_dssp HHHHHHHHHHT-SSCHHHHCCTT--HHHHH-HHHH--SSS----HHHHHHHHHHH---HHHHHC-
T ss_pred CHHHHHHHHhCCCCHHHHHHHhCcCHHHhhHHHHh--CCC-CC-HHHHHHHHHHHCcCHHHHHhC
Confidence 35667777777776544333333333333312222 221 14 778889999999999888765
No 20
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=20.62 E-value=84 Score=21.29 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=16.8
Q ss_pred CCCCchhHHHHHHHHhCCCc
Q psy15140 17 ESKPWAPFLTLAEQKTGVKR 36 (227)
Q Consensus 17 ~~~~~t~~~~~~e~ktgv~r 36 (227)
++..+.++-+++|++||++.
T Consensus 18 ~~~tv~~lK~~i~~~~gi~~ 37 (71)
T cd01812 18 SQATFGDLKKMLAPVTGVEP 37 (71)
T ss_pred CCCcHHHHHHHHHHhhCCCh
Confidence 44568999999999999875
No 21
>KOG4387|consensus
Probab=20.49 E-value=60 Score=27.83 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.7
Q ss_pred chhHHHHHHHHhCCCceeehhhhh
Q psy15140 21 WAPFLTLAEQKTGVKRIYIVLDSG 44 (227)
Q Consensus 21 ~t~~~~~~e~ktgv~r~~i~~~~~ 44 (227)
.+++|+.+|+|+.|+|+.|++.-+
T Consensus 121 lvalLEfAEekl~~d~Vfi~F~K~ 144 (191)
T KOG4387|consen 121 LVALLEFAEEKLHVDKVFICFDKN 144 (191)
T ss_pred HHHHHHHHHHhhccceEEEEEecC
Confidence 789999999999999999998744
No 22
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=20.32 E-value=1e+02 Score=22.40 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCchhHHHHHH
Q psy15140 68 PFLTLAEQKTGVKRIYIVLGLI 89 (227)
Q Consensus 68 ~~l~~iE~~tgv~~~~~~~~~v 89 (227)
..+..++++||+++..++.++-
T Consensus 19 ~TLeeL~ekTgi~k~~LlV~Ls 40 (72)
T PF05584_consen 19 CTLEELEEKTGISKNTLLVYLS 40 (72)
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 4788999999999998876554
No 23
>KOG2856|consensus
Probab=20.31 E-value=57 Score=31.13 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=19.7
Q ss_pred HHHhhcCCCCCchhHHHHHHHHhC
Q psy15140 10 LNQALNDESKPWAPFLTLAEQKTG 33 (227)
Q Consensus 10 ~~~~l~~~~~~~t~~~~~~e~ktg 33 (227)
++.-.+..-|||.|+++++|.+-+
T Consensus 126 ~ED~FrKAQKPWaK~l~evE~ak~ 149 (472)
T KOG2856|consen 126 AEDGFRKAQKPWAKLLKEVEAAKK 149 (472)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHH
Confidence 666777888999999999997643
Done!