Query psy15140
Match_columns 227
No_of_seqs 227 out of 679
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 21:39:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lnb_A Z-DNA-binding protein 1 57.8 5.5 0.00019 28.5 2.2 35 2-38 16-50 (80)
2 3lqv_P Splicing factor 3B subu 57.6 6.2 0.00021 24.5 2.1 23 1-23 2-25 (39)
3 2r1j_L Repressor protein C2; p 45.1 30 0.001 21.6 4.2 22 65-86 45-66 (68)
4 4hkr_A Calcium release-activat 44.9 1.4E+02 0.0047 25.0 9.2 24 179-202 164-187 (214)
5 1adr_A P22 C2 repressor; trans 42.8 40 0.0014 21.6 4.6 22 65-86 45-66 (76)
6 4efo_A Serine/threonine-protei 27.9 27 0.00093 25.5 1.8 21 15-36 31-51 (94)
7 1jhg_A Trp operon repressor; c 20.5 86 0.0029 23.0 3.4 63 20-86 11-77 (101)
8 1zo0_A ODC-AZ, ornithine decar 18.4 51 0.0018 25.4 1.8 23 21-43 63-85 (126)
9 2kzr_A Ubiquitin thioesterase 18.2 58 0.002 22.3 1.9 26 17-42 19-46 (86)
10 2kk7_A V-type ATP synthase sub 16.0 1.7E+02 0.0058 18.6 3.6 30 193-222 17-46 (52)
No 1
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=57.81 E-value=5.5 Score=28.52 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=29.9
Q ss_pred chHHHHHHHHHhhcCCCCCchhHHHHHHHHhCCCcee
Q psy15140 2 TISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIY 38 (227)
Q Consensus 2 ~~~~~~~~~~~~l~~~~~~~t~~~~~~e~ktgv~r~~ 38 (227)
+.++.+|+|-+.|+|..+|+.- +.|.+++||+|.-
T Consensus 16 ~~~d~eekVLe~LkeaG~Plka--geIae~~GvdKKe 50 (80)
T 2lnb_A 16 REGHLEQRILQVLTEAGSPVKL--AQLVKECQAPKRE 50 (80)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEH--HHHHHHHTSCHHH
T ss_pred ccchHHHHHHHHHHHcCCCCCH--HHHHHHHCCCHHH
Confidence 4577899999999999999876 6788899999863
No 2
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=57.63 E-value=6.2 Score=24.50 Aligned_cols=23 Identities=13% Similarity=0.456 Sum_probs=18.2
Q ss_pred CchHHHHH-HHHHhhcCCCCCchh
Q psy15140 1 MTISEIRE-NLNQALNDESKPWAP 23 (227)
Q Consensus 1 ~~~~~~~~-~~~~~l~~~~~~~t~ 23 (227)
|+...+.. ++++-+.+.|+||||
T Consensus 2 mtpe~~~~~~~~~ei~~RNrpltD 25 (39)
T 3lqv_P 2 MTPEQLQAWRWEREIDERNRPLSD 25 (39)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred CCHHHHHHHHhhccchhhcCCCCH
Confidence 45555555 789999999999998
No 3
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=45.11 E-value=30 Score=21.65 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHhCCCchhHHH
Q psy15140 65 PWAPFLTLAEQKTGVKRIYIVL 86 (227)
Q Consensus 65 ~~~~~l~~iE~~tgv~~~~~~~ 86 (227)
+-...+.++.+..|+++..++.
T Consensus 45 ~~~~~l~~i~~~l~~~~~~l~~ 66 (68)
T 2r1j_L 45 PNGENLLALSKALQCSPDYLLK 66 (68)
T ss_dssp CBHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHhc
Confidence 4567889999999999987764
No 4
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=44.89 E-value=1.4e+02 Score=25.01 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=18.1
Q ss_pred hHHHHHhHhhccccccchhhHHHH
Q psy15140 179 GSIFIYNRIIRPKFLEHESFINSA 202 (227)
Q Consensus 179 GA~~iY~~~i~P~l~~~e~~ID~~ 202 (227)
-|-..|+++++.-..++.+.|++.
T Consensus 164 Fa~hFYrsL~~hk~e~~~~~i~el 187 (214)
T 4hkr_A 164 FAIHFYRSLVSHKYEVTVSGIREL 187 (214)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888887777654
No 5
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=42.76 E-value=40 Score=21.63 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHHhCCCchhHHH
Q psy15140 65 PWAPFLTLAEQKTGVKRIYIVL 86 (227)
Q Consensus 65 ~~~~~l~~iE~~tgv~~~~~~~ 86 (227)
+-...+.++.+..|++...++.
T Consensus 45 ~~~~~l~~ia~~l~~~~~~l~~ 66 (76)
T 1adr_A 45 PNGENLLALSKALQCSPDYLLK 66 (76)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHhc
Confidence 4567888999999999887764
No 6
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=27.90 E-value=27 Score=25.50 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=16.7
Q ss_pred cCCCCCchhHHHHHHHHhCCCc
Q psy15140 15 NDESKPWAPFLTLAEQKTGVKR 36 (227)
Q Consensus 15 ~~~~~~~t~~~~~~e~ktgv~r 36 (227)
+..+. ...+.++||++|||+=
T Consensus 31 ~~~et-v~~~ke~V~eqTgIp~ 51 (94)
T 4efo_A 31 HSYNT-ATIFHELVYKQTKIIS 51 (94)
T ss_dssp ETTCB-HHHHHHHHHHHHCCCG
T ss_pred ccchH-HHHHHHHHHHHhCCCH
Confidence 44453 8889999999999975
No 7
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=20.48 E-value=86 Score=23.01 Aligned_cols=63 Identities=14% Similarity=0.051 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHhCCCceeehhh-hhHhH---HHHHHHHHHHhhccCCCChHHHHHHHHHHhCCCchhHHH
Q psy15140 20 PWAPFLTLAEQKTGVKRIYIVLD-SGTMT---ISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVL 86 (227)
Q Consensus 20 ~~t~~~~~~e~ktgv~r~~i~~~-~~~~~---~~~~~~~i~~~L~~~~~~~~~~l~~iE~~tgv~~~~~~~ 86 (227)
.|.++++.++.....++.|-++. .-+.- .-..+=.|.+.|.+.. ..=+.|.+.+|++++++.=
T Consensus 11 ~~~~l~~~i~~~~~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge----~TQREIA~~lGiS~stISR 77 (101)
T 1jhg_A 11 EWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGE----MSQRELKNELGAGIATITR 77 (101)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCC----SCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC----cCHHHHHHHHCCChhhhhH
Confidence 48999999999999999999995 33221 1122333444444421 2456899999999998753
No 8
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7
Probab=18.38 E-value=51 Score=25.38 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.5
Q ss_pred chhHHHHHHHHhCCCceeehhhh
Q psy15140 21 WAPFLTLAEQKTGVKRIYIVLDS 43 (227)
Q Consensus 21 ~t~~~~~~e~ktgv~r~~i~~~~ 43 (227)
...+|+.+|+|.+++++.+.+..
T Consensus 63 fv~LLEfAEe~L~~~~V~v~f~K 85 (126)
T 1zo0_A 63 FAALLEFAEEQLRADHVFICFPK 85 (126)
T ss_dssp HHHHHHHHHHHHCCCCEEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEEEEec
Confidence 67899999999999999998763
No 9
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=18.23 E-value=58 Score=22.31 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=19.8
Q ss_pred CCCCchhHHHHHHHHhCCC--ceeehhh
Q psy15140 17 ESKPWAPFLTLAEQKTGVK--RIYIVLD 42 (227)
Q Consensus 17 ~~~~~t~~~~~~e~ktgv~--r~~i~~~ 42 (227)
++..+.++-++++++||++ |.-+..|
T Consensus 19 ~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~ 46 (86)
T 2kzr_A 19 SRTRLRELQGQIAAITGIAPGSQRILVG 46 (86)
T ss_dssp TTCBHHHHHHHHHHHTCCCTTTCCCEES
T ss_pred CCCCHHHHHHHHHHHhCCCccceEEEeC
Confidence 3446999999999999994 6655544
No 10
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=15.99 E-value=1.7e+02 Score=18.61 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=18.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15140 193 LEHESFINSAFTKATDSAVKFATAKILEAE 222 (227)
Q Consensus 193 ~~~e~~ID~~i~~~~~~~~~~~~~~~~~~~ 222 (227)
..-+...++.+++++..+.+......++++
T Consensus 17 ~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae 46 (52)
T 2kk7_A 17 DDAKAEANKIISEAEAEKAKILEKAKEEAE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777766666666555543
Done!