Query psy15140
Match_columns 227
No_of_seqs 227 out of 679
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 21:39:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15140.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15140hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zavu1 a.108.1.1 (U:1-30) Rib 23.6 24 0.0017 18.9 2.0 30 1-33 1-30 (30)
2 d1u0ma1 c.95.1.2 (A:2-201) Put 21.5 37 0.0027 25.3 3.7 37 4-42 18-54 (200)
3 d2icta1 a.35.1.3 (A:8-94) Anti 20.9 53 0.0039 21.2 4.0 21 65-85 41-61 (87)
4 d2gyc31 a.108.1.1 (3:2-48) Rib 20.1 25 0.0018 21.0 1.8 31 7-37 3-34 (47)
5 d1b0na2 a.35.1.3 (A:1-68) SinR 15.0 1.2E+02 0.0086 18.0 6.4 45 26-85 18-62 (68)
6 d2pgga1 e.8.1.4 (A:31-804) Vir 14.8 55 0.004 29.5 3.6 30 6-36 469-498 (774)
7 d2r1jl1 a.35.1.2 (L:3-68) P22 14.7 1.2E+02 0.0086 17.8 4.6 57 25-86 8-64 (66)
8 d1qusa_ d.2.1.6 (A:) 36 kDa so 14.6 51 0.0037 27.1 3.1 23 67-89 99-121 (322)
9 d1v5ta_ d.15.1.1 (A:) 8430435i 14.1 43 0.0031 21.7 2.1 19 17-35 26-44 (90)
10 d1teda_ c.95.1.2 (A:) Polyketi 14.1 45 0.0032 26.9 2.7 37 4-42 29-65 (372)
No 1
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.64 E-value=24 Score=18.86 Aligned_cols=30 Identities=33% Similarity=0.381 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHhhcCCCCCchhHHHHHHHHhC
Q psy15140 1 MTISEIRENLNQALNDESKPWAPFLTLAEQKTG 33 (227)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~~~t~~~~~~e~ktg 33 (227)
|++.++-+.+++.--. -...+..++|+|.|
T Consensus 1 m~~eeiv~aiekltva---elaelvk~ledkfg 30 (30)
T d1zavu1 1 MTIDEIIEAIEKLTVS---ELAELVKKLEDKFG 30 (30)
T ss_dssp CCHHHHHHHHHHSBHH---HHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhhHH---HHHHHHHHHHhhcC
Confidence 7788888888873211 14566777888876
No 2
>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]}
Probab=21.55 E-value=37 Score=25.34 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHhCCCceeehhh
Q psy15140 4 SEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLD 42 (227)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~t~~~~~~e~ktgv~r~~i~~~ 42 (227)
+++.|.+.+ .++ +.|+.+...++-++|||++.|.+..
T Consensus 18 ~e~~e~~~~-~~~-~~~~~~~~~~i~~~tGI~~R~~~~~ 54 (200)
T d1u0ma1 18 EETLELARR-RHT-DHPQLPLALRLIENTGVRTRHIVQP 54 (200)
T ss_dssp HHHHHHHHH-HHT-TCTTHHHHHHHHHHTCCCEEEESSC
T ss_pred HHHHHHHHH-hCC-CchhHHHHHHHHHhCCCCeeeEECC
Confidence 345555554 333 3468888889999999999998764
No 3
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=20.94 E-value=53 Score=21.15 Aligned_cols=21 Identities=5% Similarity=-0.162 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHhCCCchhHH
Q psy15140 65 PWAPFLTLAEQKTGVKRIYIV 85 (227)
Q Consensus 65 ~~~~~l~~iE~~tgv~~~~~~ 85 (227)
+-...+..+++.+|+++++|+
T Consensus 41 ~s~~~~~kla~~lgvs~~~~L 61 (87)
T d2icta1 41 LTPEMAIKLSVVIGSSPQMWL 61 (87)
T ss_dssp CCHHHHHHHHHHTCSCHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHH
Confidence 567788899999999999886
No 4
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=20.05 E-value=25 Score=20.96 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=19.3
Q ss_pred HHHHHHhhcCCCC-CchhHHHHHHHHhCCCce
Q psy15140 7 RENLNQALNDESK-PWAPFLTLAEQKTGVKRI 37 (227)
Q Consensus 7 ~~~~~~~l~~~~~-~~t~~~~~~e~ktgv~r~ 37 (227)
||+|-+.+.+-|. -+.++....|+|.||+-.
T Consensus 3 ke~Ileaia~MSVmdvveLi~amEEKFGVsaa 34 (47)
T d2gyc31 3 KDQIIEAVAAMSVMDVVELISAMEEKFGVSAA 34 (47)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTCTTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhCcchh
Confidence 4555555555551 123556678999999854
No 5
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=14.96 E-value=1.2e+02 Score=17.97 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=29.1
Q ss_pred HHHHHHhCCCceeehhhhhHhHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCCchhHH
Q psy15140 26 TLAEQKTGVKRIYIVLDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIV 85 (227)
Q Consensus 26 ~~~e~ktgv~r~~i~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~l~~iE~~tgv~~~~~~ 85 (227)
..+.+++||++. .+.++.+ .....|-...+.+|.+..|++..+++
T Consensus 18 ~~la~~~gis~~-------------~i~~~E~--g~~~~ps~~~l~~ia~~l~v~~~~l~ 62 (68)
T d1b0na2 18 SELAEKAGVAKS-------------YLSSIER--NLQTNPSIQFLEKVSAVLDVSVHTLL 62 (68)
T ss_dssp HHHHHHHTCCHH-------------HHHHHHT--TCCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHCCCHH-------------HHHHHHc--CCCCCCCHHHHHHHHHHHCCcHHHHc
Confidence 556677887763 2333332 11222567789999999999988765
No 6
>d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious bursal disease virus [TaxId: 10995]}
Probab=14.80 E-value=55 Score=29.47 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=23.6
Q ss_pred HHHHHHHhhcCCCCCchhHHHHHHHHhCCCc
Q psy15140 6 IRENLNQALNDESKPWAPFLTLAEQKTGVKR 36 (227)
Q Consensus 6 ~~~~~~~~l~~~~~~~t~~~~~~e~ktgv~r 36 (227)
+--.=+.-.+.++ |.+|-|.++|++||++=
T Consensus 469 ivv~kw~~~g~P~-P~~~ef~~le~~tGInf 498 (774)
T d2pgga1 469 LVLDQWNLMRQPR-PDSEEFKSIEDKLGINF 498 (774)
T ss_dssp HHHHHHHHTTCCC-TTSHHHHTHHHHHTCCE
T ss_pred HHHHHHHHhCCCC-CCchHHHHHHHHhCCce
Confidence 3333445668888 99999999999999984
No 7
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=14.72 E-value=1.2e+02 Score=17.82 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCceeehhhhhHhHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCCchhHHH
Q psy15140 25 LTLAEQKTGVKRIYIVLDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVL 86 (227)
Q Consensus 25 ~~~~e~ktgv~r~~i~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~l~~iE~~tgv~~~~~~~ 86 (227)
+..+-++-|.+...++-..| +-.+.+.++.+ ....|-...+.+|.+..|++.++++.
T Consensus 8 ik~~R~~~g~tq~~lA~~~g--vs~~~i~~~e~---g~~~p~~~~l~~ia~~l~v~~~~Ll~ 64 (66)
T d2r1jl1 8 IRARRKKLKIRQAALGKMVG--VSNVAISQWER---SETEPNGENLLALSKALQCSPDYLLK 64 (66)
T ss_dssp HHHHHHHHTCCHHHHHHHHT--SCHHHHHHHHT---TSSCCBHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHC--CCHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCHHHHhc
Confidence 34444455555555444322 12233444443 22335778999999999999987764
No 8
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=14.55 E-value=51 Score=27.08 Aligned_cols=23 Identities=30% Similarity=-0.021 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCchhHHHHHH
Q psy15140 67 APFLTLAEQKTGVKRIYIVLGLI 89 (227)
Q Consensus 67 ~~~l~~iE~~tgv~~~~~~~~~v 89 (227)
...|.++|++.||+++.++..|.
T Consensus 99 ~~~l~~~e~~yGV~~~ii~aiwg 121 (322)
T d1qusa_ 99 EDALNRAWQVYGVPPEIIVGIIG 121 (322)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHh
Confidence 45899999999999997765444
No 9
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.14 E-value=43 Score=21.66 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=16.1
Q ss_pred CCCCchhHHHHHHHHhCCC
Q psy15140 17 ESKPWAPFLTLAEQKTGVK 35 (227)
Q Consensus 17 ~~~~~t~~~~~~e~ktgv~ 35 (227)
++-++.++=+++|++|||+
T Consensus 26 ~~~tV~~LK~~i~~~t~vp 44 (90)
T d1v5ta_ 26 EDDTVLDLKQFLKTLTGVL 44 (90)
T ss_dssp SSSBHHHHHHHHHHHTCCC
T ss_pred CCCcHHHHHHHHHHHHcCC
Confidence 4446999999999999985
No 10
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.08 E-value=45 Score=26.94 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCCCCCchhHHHHHHHHhCCCceeehhh
Q psy15140 4 SEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYIVLD 42 (227)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~t~~~~~~e~ktgv~r~~i~~~ 42 (227)
+++.+.+.+.-.++. +.+-+.++.++|||+..|++..
T Consensus 29 ~e~~~~~~~~~~~~~--~~~~~~ri~~~tGI~~R~~~~~ 65 (372)
T d1teda_ 29 SDAADRVAELFLDPG--QRERIPRVYQKSRITTRRMAVD 65 (372)
T ss_dssp HHHHHHHHTC----C--CTTHHHHHHHTSCCSEEECSSC
T ss_pred HHHHHHHHhhcCChH--HHHHHHHHHHccCCcccceecc
Confidence 566777776555654 5677788999999999888753
Done!