RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15140
         (227 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.5 bits (73), Expect = 0.12
 Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 63/227 (27%)

Query: 14  LND--ESKPWAPF-------LT-----LAEQKTGVKRIYIVLD--SGTMTISEIRENLNQ 57
           L +   +K W  F       LT     + +  +     +I LD  S T+T  E++  L +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 58  ALNDESKPWAPFLTLAEQKTGVKRIY-IVLGLIG-----FLAL---YLVFGYAA--QVIC 106
            L+   +       L  +   V       L +I       LA    +          +I 
Sbjct: 310 YLDCRPQ------DLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 107 NCIGFLYPA-----YKSMKAIESENKQDDTKWL-TYWVVFALFSIVEYPAEFILSIFPFY 160
           + +  L PA     +  + ++   +    T  L   W     F +++     +++    Y
Sbjct: 361 SSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIW-----FDVIKSDVMVVVNKLHKY 414

Query: 161 WLIKCIFFIWCFAPMENNGSIFIYNRI--IRPKFLE----HESFINS 201
            L++               +I I +    ++ K       H S ++ 
Sbjct: 415 SLVEK----Q-----PKESTISIPSIYLELKVKLENEYALHRSIVDH 452


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.9 bits (72), Expect = 0.19
 Identities = 30/168 (17%), Positives = 49/168 (29%), Gaps = 61/168 (36%)

Query: 94  LYLVFGYAAQVICNCIG-----F-----LYPAYKSMKA--IE---------SENKQDDTK 132
           L  +FG   Q      G     F     LY  Y  +    I+              D  K
Sbjct: 156 LVAIFG--GQ------GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207

Query: 133 WLTYWVVFALFSIVEYPA-----EFILSI---FPFYWLIKCI-FFIWC----FAPMENNG 179
             T      +   +E P+     +++LSI    P   +I+   + +      F P E   
Sbjct: 208 VFTQ--GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE--- 262

Query: 180 SIFIYNRIIRPKF---LEH-ESFINSAFTKATDSAVKF--ATAKILEA 221
                   +R        H +  + +     TDS   F  +  K +  
Sbjct: 263 --------LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302


>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A
           {Escherichia coli} PDB: 2w8i_A 2w8h_A*
          Length = 359

 Score = 30.7 bits (69), Expect = 0.38
 Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 1   MTISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYI---VLDSGTMTISEIRENLNQ 57
            T+S++R+++   L    +  +P + ++      +++Y+   V +SG   I+ I   +  
Sbjct: 119 KTVSQVRQDITSRLTTYIE--SPQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPLTVMD 176

Query: 58  ALN 60
           A+N
Sbjct: 177 AIN 179


>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
           synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
           3tdc_A*
          Length = 793

 Score = 28.6 bits (64), Expect = 2.2
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 12/56 (21%)

Query: 31  KTGVKRIYIVLDSGTMT--ISEIRENLNQALNDESKPWAPFLTLAEQKTGVKRIYI 84
             G+ R+Y+  +SG       EI+     A  D   P            G+K +Y+
Sbjct: 154 AEGIPRVYLAANSGARIGLAEEIKHMFQVAWVDPEDPHK----------GIKYLYL 199


>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport
           protein; 1.75A {Escherichia coli}
          Length = 308

 Score = 27.8 bits (62), Expect = 3.1
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 66  WAPFLTLAEQKTGVKRIYIVLGLIGFLALYLV 97
           W P+ + A  + GV+ +     L    + YL 
Sbjct: 159 WDPYYSAALLQGGVRVLKDGTDLNQTGSFYLA 190


>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
           glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
           UDP; 1.7A {Streptomyces antibioticus}
          Length = 430

 Score = 27.5 bits (61), Expect = 4.1
 Identities = 5/25 (20%), Positives = 9/25 (36%)

Query: 39  IVLDSGTMTISEIRENLNQALNDES 63
             L +   T   +RE     ++D  
Sbjct: 345 RKLATEEATADLLRETALALVDDPE 369


>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
           and 4 calmodulin...; transferase, calcium dependent
           protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
           PDB: 3hzt_A* 3dxn_A 3l19_A*
          Length = 494

 Score = 27.4 bits (61), Expect = 4.2
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 22  APFLTLAEQKTGVKRIYIVLD---SGTMTISEIRENLNQALNDESKPWAPFLTLAE 74
           A  LT  E+   +  I+  +D    G +   E+ +  ++   +E   +      +E
Sbjct: 336 ASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESE 391


>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
           binding protein, apoptosis, calcium, endoplasmic
           reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
           2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
          Length = 172

 Score = 26.8 bits (60), Expect = 4.6
 Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 24  FLTLAEQKTGVKRIYIVLD---SGTMTISEIRENLNQA---LNDE 62
           F  + +  T  + ++   D   SG +  +E+++ L+     L+D+
Sbjct: 66  FTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQ 110


>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
           {Micromonospora echinospora}
          Length = 402

 Score = 27.0 bits (60), Expect = 6.0
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 39  IVLDSGTMTISEIRENLNQALNDES 63
            VL    +  + IRE + +   D +
Sbjct: 344 SVLRPDQLEPASIREAVERLAADSA 368


>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH
          domains, type I domains, fragIle X mental retardation
          protein, RNA BI protein; 1.90A {Homo sapiens} PDB:
          2fmr_A
          Length = 144

 Score = 26.1 bits (57), Expect = 6.1
 Identities = 8/51 (15%), Positives = 17/51 (33%)

Query: 28 AEQKTGVKRIYIVLDSGTMTISEIRENLNQALNDESKPWAPFLTLAEQKTG 78
          A +  GV  I +  D+ T  I    ++  +      +     + +     G
Sbjct: 29 ARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVG 79


>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease),
           protease, D-aminopeptidase, decamer,
           SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP:
           c.99.1.1
          Length = 274

 Score = 26.3 bits (58), Expect = 8.0
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 12  QALNDESKPWAPFLTLAEQKTGVKRIYIVLDSGTMTISEIRENLNQAL--NDESKPWAP 68
                E++   P +T A  K  + R  +   S       + E    AL   D+ KP  P
Sbjct: 155 DRAAKEAEELIPNVTTAAVKQTISRSAVKCLSPAKRGRLLTEKTAFALQNKDKVKPLTP 213


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0712    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,350,022
Number of extensions: 187098
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 26
Length of query: 227
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,188,903
Effective search space: 573879711
Effective search space used: 573879711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.0 bits)