BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15141
         (95 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine
          Biosynthesis
 pdb|1GPH|2 Chain 2, Structure Of The Allosteric Regulatory Enzyme Of Purine
          Biosynthesis
 pdb|1GPH|3 Chain 3, Structure Of The Allosteric Regulatory Enzyme Of Purine
          Biosynthesis
 pdb|1GPH|4 Chain 4, Structure Of The Allosteric Regulatory Enzyme Of Purine
          Biosynthesis
          Length = 465

 Score = 27.3 bits (59), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 2  CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDA 33
          CG++ I+GHE +  +T   +    +QHRG + 
Sbjct: 1  CGVFGIWGHEEAPQITY--YGLHSLQHRGQEG 30


>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
          Amidotransferase From B. Subtilis Complexed With Adp
          And Gmp
 pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
          Amidotransferase From B. Subtilis Complexed With Adp
          And Gmp
 pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
          Amidotransferase From B. Subtilis Complexed With Adp
          And Gmp
 pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
          Amidotransferase From B. Subtilis Complexed With Adp
          And Gmp
          Length = 459

 Score = 27.3 bits (59), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 2  CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDA 33
          CG++ I+GHE +  +T   +    +QHRG + 
Sbjct: 1  CGVFGIWGHEEAPQITY--YGLHSLQHRGQEG 30


>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
 pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
 pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
 pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
 pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin
          A
 pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin
          A
 pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin
          A
          Length = 166

 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 38 YDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEIYNFKRLG 87
          + N V KT   F +L   ++ +G +    HR  R  +I  G+  NF   G
Sbjct: 27 FGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTG 76


>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
           Phosphate Bound In The Active Site.
 pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
           Phosphate Bound In The Active Site
          Length = 879

 Score = 26.2 bits (56), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 56  DSLYGMQPMKLHRYPRVTLICNGEIYNF 83
           D+L+ MQ  ++H Y R  L   G IY +
Sbjct: 599 DTLFDMQVKRIHEYKRQQLNVFGIIYRY 626


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.467 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,221,320
Number of Sequences: 62578
Number of extensions: 120014
Number of successful extensions: 361
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 4
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)