Query psy15141
Match_columns 95
No_of_seqs 158 out of 1217
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 21:40:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09431 asnB asparagine synth 100.0 5.3E-28 1.1E-32 181.1 10.4 88 1-92 1-90 (554)
2 PTZ00077 asparagine synthetase 99.9 6.5E-28 1.4E-32 181.5 9.7 92 1-93 1-96 (586)
3 COG0367 AsnB Asparagine syntha 99.9 7.2E-28 1.6E-32 180.0 9.1 89 1-93 1-90 (542)
4 PLN02549 asparagine synthase ( 99.9 3.1E-27 6.6E-32 177.6 10.3 87 1-91 1-89 (578)
5 TIGR03104 trio_amidotrans aspa 99.9 4.4E-27 9.5E-32 177.2 10.7 89 1-93 1-91 (589)
6 TIGR03108 eps_aminotran_1 exos 99.9 6.7E-27 1.5E-31 177.0 10.1 89 1-93 1-91 (628)
7 PRK08525 amidophosphoribosyltr 99.9 3.7E-26 8E-31 167.6 10.5 91 1-94 1-119 (445)
8 cd00714 GFAT Glutamine amidotr 99.9 7.2E-26 1.6E-30 152.6 9.7 89 2-93 1-115 (215)
9 cd03766 Gn_AT_II_novel Gn_AT_I 99.9 6E-26 1.3E-30 149.8 8.2 87 1-88 1-90 (181)
10 PRK06388 amidophosphoribosyltr 99.9 7.6E-25 1.6E-29 161.5 10.4 92 1-94 19-136 (474)
11 PRK07272 amidophosphoribosyltr 99.9 9.8E-25 2.1E-29 161.2 11.0 91 1-94 11-130 (484)
12 PRK09123 amidophosphoribosyltr 99.9 1E-24 2.3E-29 161.0 10.4 91 1-94 21-140 (479)
13 PRK07349 amidophosphoribosyltr 99.9 1.4E-24 3E-29 160.8 10.8 93 1-94 33-152 (500)
14 PRK07631 amidophosphoribosyltr 99.9 1.4E-24 3.1E-29 160.0 10.4 91 1-94 11-129 (475)
15 PRK08341 amidophosphoribosyltr 99.9 2.3E-24 5E-29 157.9 11.0 91 1-94 4-118 (442)
16 PRK00331 glucosamine--fructose 99.9 2.1E-24 4.5E-29 162.9 9.8 91 1-94 1-117 (604)
17 PRK09246 amidophosphoribosyltr 99.9 2.9E-24 6.2E-29 159.5 10.3 91 1-93 1-117 (501)
18 PRK06781 amidophosphoribosyltr 99.9 5E-24 1.1E-28 157.2 10.8 91 1-94 11-129 (471)
19 cd00712 AsnB Glutamine amidotr 99.9 9.3E-24 2E-28 142.4 11.2 88 2-93 1-89 (220)
20 PTZ00295 glucosamine-fructose- 99.9 2.9E-24 6.2E-29 163.1 9.3 91 1-94 24-147 (640)
21 PRK07847 amidophosphoribosyltr 99.9 4.5E-24 9.8E-29 158.4 9.5 92 1-94 23-143 (510)
22 PRK05793 amidophosphoribosyltr 99.9 1.2E-23 2.6E-28 155.2 10.7 93 1-94 14-134 (469)
23 TIGR01536 asn_synth_AEB aspara 99.9 9.9E-24 2.1E-28 155.2 9.7 86 4-93 1-89 (467)
24 PLN02981 glucosamine:fructose- 99.9 2.2E-23 4.7E-28 159.3 9.6 94 1-94 1-139 (680)
25 cd01907 GlxB Glutamine amidotr 99.9 3.5E-23 7.7E-28 142.3 9.5 90 2-94 1-127 (249)
26 TIGR01135 glmS glucosamine--fr 99.9 2.9E-23 6.2E-28 156.7 9.1 89 2-93 1-115 (607)
27 PLN02440 amidophosphoribosyltr 99.9 5.3E-23 1.1E-27 152.1 10.1 91 1-93 1-118 (479)
28 PTZ00394 glucosamine-fructose- 99.9 4.6E-23 1E-27 157.3 9.8 93 1-94 1-149 (670)
29 cd00715 GPATase_N Glutamine am 99.9 6.4E-22 1.4E-26 136.0 10.4 90 2-93 1-117 (252)
30 TIGR01134 purF amidophosphorib 99.9 4.1E-21 8.9E-26 141.0 10.5 91 2-93 1-117 (442)
31 KOG0571|consensus 99.8 9.3E-21 2E-25 137.1 6.9 87 1-91 1-88 (543)
32 COG0034 PurF Glutamine phospho 99.8 4E-20 8.6E-25 134.5 9.3 94 1-94 4-125 (470)
33 COG0449 GlmS Glucosamine 6-pho 99.8 2E-20 4.4E-25 140.2 7.7 90 1-94 1-116 (597)
34 cd00352 Gn_AT_II Glutamine ami 99.8 6E-19 1.3E-23 117.6 10.6 90 2-93 1-119 (220)
35 KOG0572|consensus 99.8 4E-18 8.7E-23 122.0 8.4 94 1-94 1-122 (474)
36 KOG1268|consensus 99.7 6.1E-18 1.3E-22 124.8 8.8 94 1-94 1-132 (670)
37 PF13522 GATase_6: Glutamine a 99.5 8.9E-15 1.9E-19 92.2 5.1 58 31-92 1-62 (133)
38 PF13537 GATase_7: Glutamine a 99.4 2.2E-13 4.8E-18 84.9 1.7 44 49-93 1-45 (125)
39 TIGR03442 conserved hypothetic 99.3 3.5E-12 7.6E-17 88.0 5.0 86 1-91 1-135 (251)
40 cd01908 YafJ Glutamine amidotr 99.1 8.6E-11 1.9E-15 81.1 5.6 48 43-93 80-129 (257)
41 KOG0573|consensus 99.1 1.3E-10 2.9E-15 85.1 6.5 80 1-83 1-82 (520)
42 PF00310 GATase_2: Glutamine a 99.1 6.4E-10 1.4E-14 80.3 8.5 45 43-94 195-241 (361)
43 PF13230 GATase_4: Glutamine a 98.5 3.1E-07 6.8E-12 64.1 5.0 83 1-87 1-118 (271)
44 cd01909 betaLS_CarA_N Glutamin 98.4 4E-07 8.6E-12 61.1 5.0 30 61-93 44-73 (199)
45 cd00713 GltS Glutamine amidotr 98.4 5.3E-07 1.1E-11 66.3 4.5 44 43-93 201-246 (413)
46 cd01910 Wali7 This domain is p 98.0 1E-05 2.2E-10 55.2 4.1 26 64-90 66-91 (224)
47 COG0121 Predicted glutamine am 97.9 3.3E-05 7.1E-10 53.6 6.2 82 1-85 1-115 (252)
48 COG0067 GltB Glutamate synthas 97.5 0.00013 2.8E-09 53.1 3.8 45 43-94 202-248 (371)
49 COG0067 GltB Glutamate synthas 97.1 0.00044 9.4E-09 50.4 2.9 40 1-40 12-55 (371)
50 PRK11750 gltB glutamate syntha 93.1 0.11 2.4E-06 43.9 3.5 43 44-93 213-257 (1485)
51 PRK11582 flagella biosynthesis 83.0 1 2.2E-05 29.4 2.0 19 70-88 33-51 (169)
52 TIGR03823 FliZ flagellar regul 82.9 1 2.2E-05 29.4 2.0 19 70-88 33-51 (168)
53 KOG0399|consensus 76.5 1.1 2.4E-05 38.0 0.8 32 43-81 284-317 (2142)
54 PF10777 YlaC: Inner membrane 69.2 2.2 4.7E-05 27.6 0.7 21 71-91 95-115 (155)
55 cd00713 GltS Glutamine amidotr 68.6 5.4 0.00012 29.9 2.7 30 2-31 1-33 (413)
56 PF04641 Rtf2: Rtf2 RING-finge 67.0 4.8 0.0001 28.0 2.1 36 47-93 34-69 (260)
57 PF10636 hemP: Hemin uptake pr 61.3 7.1 0.00015 19.4 1.5 13 70-82 13-25 (38)
58 PRK00124 hypothetical protein; 60.7 6.2 0.00013 25.5 1.6 25 70-94 86-110 (151)
59 TIGR00159 conserved hypothetic 59.1 20 0.00044 24.5 3.9 28 65-92 175-205 (211)
60 PRK06764 hypothetical protein; 57.6 9.3 0.0002 22.6 1.8 14 70-83 84-97 (105)
61 PRK10183 hypothetical protein; 57.1 8.7 0.00019 20.7 1.5 13 70-82 31-43 (56)
62 COG1671 Uncharacterized protei 56.4 7.9 0.00017 25.1 1.5 25 70-94 85-109 (150)
63 PF02639 DUF188: Uncharacteriz 53.6 9.9 0.00021 23.9 1.6 25 70-94 70-94 (130)
64 COG4892 Predicted heme/steroid 52.3 13 0.00027 21.2 1.7 13 70-82 17-29 (81)
65 KOG0898|consensus 49.1 9.3 0.0002 24.5 1.0 22 70-91 98-119 (152)
66 PF02457 DisA_N: DisA bacteria 47.3 20 0.00044 22.2 2.3 17 65-81 106-122 (122)
67 PF00173 Cyt-b5: Cytochrome b5 46.2 13 0.00028 20.3 1.2 16 70-85 14-29 (76)
68 COG4256 HemP Hemin uptake prot 45.0 15 0.00032 20.1 1.2 14 70-83 38-51 (63)
69 cd00027 BRCT Breast Cancer Sup 44.7 34 0.00073 17.2 2.7 24 72-95 2-27 (72)
70 PF02960 K1: K1 glycoprotein; 38.8 3.3 7.1E-05 25.6 -2.1 8 1-8 83-90 (130)
71 COG4296 Uncharacterized protei 36.3 90 0.0019 20.1 3.9 32 24-58 114-146 (156)
72 COG4815 Uncharacterized protei 35.7 47 0.001 21.1 2.6 34 50-83 56-91 (145)
73 PF11317 DUF3119: Protein of u 35.7 31 0.00068 21.4 1.8 23 73-95 94-116 (116)
74 PF01589 Alpha_E1_glycop: Alph 33.3 25 0.00054 26.9 1.3 14 71-84 239-252 (502)
75 PF06200 tify: tify domain; I 33.1 40 0.00087 16.4 1.6 14 70-83 6-19 (36)
76 PF04500 FLYWCH: FLYWCH zinc f 32.4 56 0.0012 16.6 2.3 15 70-84 7-21 (62)
77 PF10411 DsbC_N: Disulfide bon 32.0 46 0.00099 17.6 1.9 20 62-83 34-53 (57)
78 PF07484 Collar: Phage Tail Co 31.4 27 0.00059 18.6 0.9 19 73-91 15-36 (57)
79 PF14721 AIF_C: Apoptosis-indu 30.3 54 0.0012 20.8 2.2 20 73-94 114-133 (133)
80 cd01811 OASL_repeat1 2'-5' oli 30.3 33 0.00072 19.7 1.2 32 47-82 37-68 (80)
81 COG0120 RpiA Ribose 5-phosphat 30.0 87 0.0019 21.7 3.4 29 63-92 167-196 (227)
82 PF02839 CBM_5_12: Carbohydrat 29.9 35 0.00076 16.4 1.1 11 72-82 14-24 (41)
83 KOG0537|consensus 29.3 44 0.00095 20.8 1.7 17 70-86 19-35 (124)
84 cd01398 RPI_A RPI_A: Ribose 5- 29.2 85 0.0018 21.1 3.2 33 61-94 161-194 (213)
85 COG1888 Uncharacterized protei 28.7 94 0.002 18.5 2.9 26 70-95 49-74 (97)
86 PHA02104 hypothetical protein 28.5 22 0.00048 20.3 0.3 12 72-83 52-63 (89)
87 PF04239 DUF421: Protein of un 26.9 99 0.0021 18.2 2.9 12 70-81 7-18 (99)
88 PRK05863 sulfur carrier protei 25.5 58 0.0013 17.5 1.6 21 70-90 30-50 (65)
89 PF12574 120_Rick_ant: 120 KDa 25.2 1.3E+02 0.0029 21.1 3.6 33 60-92 189-231 (255)
90 PF02680 DUF211: Uncharacteriz 25.0 95 0.0021 18.6 2.5 26 70-95 47-72 (95)
91 PF05521 Phage_H_T_join: Phage 24.6 54 0.0012 18.1 1.5 16 70-85 65-80 (95)
92 PF05720 Dicty_CAD: Cell-cell 24.5 1.6E+02 0.0034 17.2 4.3 13 72-84 51-63 (82)
93 PF00837 T4_deiodinase: Iodoth 23.4 1.3E+02 0.0029 21.0 3.3 13 81-93 224-236 (237)
94 PF13186 SPASM: Iron-sulfur cl 23.2 55 0.0012 16.7 1.2 10 72-81 8-17 (64)
95 PF00403 HMA: Heavy-metal-asso 22.9 98 0.0021 15.9 2.2 25 70-94 36-60 (62)
96 cd00036 ChtBD3 Chitin/cellulos 21.7 65 0.0014 15.4 1.2 11 72-82 12-22 (41)
97 PRK13441 F0F1 ATP synthase sub 21.6 1.4E+02 0.0029 19.4 3.1 25 70-94 150-180 (180)
98 COG4820 EutJ Ethanolamine util 21.6 2.5E+02 0.0054 19.6 4.3 58 32-95 26-90 (277)
99 PRK13033 formyl peptide recept 21.2 34 0.00074 20.9 0.1 21 61-82 109-129 (133)
100 PHA02123 hypothetical protein 20.9 1.6E+02 0.0035 18.2 3.1 34 50-84 75-108 (146)
101 PF13926 DUF4211: Domain of un 20.9 56 0.0012 20.7 1.1 17 71-87 130-146 (153)
102 PF09008 Head_binding: Head bi 20.7 1E+02 0.0022 19.0 2.1 19 60-80 61-79 (114)
103 PF03621 MbtH: MbtH-like prote 20.5 60 0.0013 17.2 1.0 17 62-79 4-20 (54)
104 COG4699 Uncharacterized protei 20.3 16 0.00035 22.6 -1.4 25 71-95 85-109 (120)
105 PF03197 FRD2: Bacteriophage F 20.2 70 0.0015 19.3 1.3 10 73-82 30-39 (102)
No 1
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=99.95 E-value=5.3e-28 Score=181.11 Aligned_cols=88 Identities=33% Similarity=0.468 Sum_probs=74.9
Q ss_pred CeeEEEEeCCCCCCc--ccHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEee
Q psy15141 1 MCGIWAIFGHETSNY--LTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNG 78 (95)
Q Consensus 1 McGI~g~~~~~~~~~--~~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NG 78 (95)
||||+|+++.+.+.. ......|+.+|+|||||++++|..+ +++|||+||+|+|++.+.||+.+.+ ++++|+|||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~---~~~lgh~RLsIid~~~g~QP~~~~~-~~~~lv~NG 76 (554)
T PRK09431 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGIYASD---NAILGHERLSIVDVNGGAQPLYNED-GTHVLAVNG 76 (554)
T ss_pred CceEEEEEcCCCcchhHHHHHHHHHHHhhCCCCCcCCEEEeC---CeEEEEEEeeecCCCCCCCCCCcCC-CCEEEEEEE
Confidence 999999997532221 1234457889999999999999875 6789999999999988999999887 889999999
Q ss_pred eEcChHHHHHHHHh
Q psy15141 79 EIYNFKRLGVQVRS 92 (95)
Q Consensus 79 eIyN~~eL~~~L~~ 92 (95)
||||+.|||++|..
T Consensus 77 EIyN~~eLr~~L~~ 90 (554)
T PRK09431 77 EIYNHQELRAELGD 90 (554)
T ss_pred EEecHHHHHHHHhc
Confidence 99999999999965
No 2
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=99.95 E-value=6.5e-28 Score=181.52 Aligned_cols=92 Identities=32% Similarity=0.410 Sum_probs=74.6
Q ss_pred CeeEEEEeCCCCCCcc--cHhhHHhhhccccCCCccceEEec--CCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEE
Q psy15141 1 MCGIWAIFGHETSNYL--TSCEHNFVKIQHRGPDAWRIEYDN--HVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLIC 76 (95)
Q Consensus 1 McGI~g~~~~~~~~~~--~~~~~~~~~l~hRGpD~~g~~~~~--~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~ 76 (95)
||||+|+++....... .....|+.+|+|||||++++|... ..+.++|||+||+|+|++.+.|||.+++ ++++|+|
T Consensus 1 MCGI~gi~~~~~~~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~d-~~~~lv~ 79 (586)
T PTZ00077 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDD-ETVALMQ 79 (586)
T ss_pred CceEEEEEecCCchhhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCCC-CCEEEEE
Confidence 9999999975322211 123346779999999999999751 1125789999999999988999999987 8899999
Q ss_pred eeeEcChHHHHHHHHhc
Q psy15141 77 NGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 77 NGeIyN~~eL~~~L~~~ 93 (95)
||||||+.+||++|..+
T Consensus 80 NGEIYN~~eLr~~L~~~ 96 (586)
T PTZ00077 80 NGEIYNHWEIRPELEKE 96 (586)
T ss_pred EEEEcCHHHHHHHHHhc
Confidence 99999999999999754
No 3
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=99.95 E-value=7.2e-28 Score=180.00 Aligned_cols=89 Identities=33% Similarity=0.471 Sum_probs=76.3
Q ss_pred CeeEEEEeCCCCCCc-ccHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEeee
Q psy15141 1 MCGIWAIFGHETSNY-LTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGE 79 (95)
Q Consensus 1 McGI~g~~~~~~~~~-~~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGe 79 (95)
||||+|++..+.... ......|..+|.|||||++|+|... +++|||+||+|+|+..+.||+.+++ ++++|+||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~---~~~~gh~rL~i~d~~~g~QP~~~~~-~~~~l~~NGE 76 (542)
T COG0367 1 MCGIAGILNFKNLIDAKSIIEEMTKLLRHRGPDDSGVWISL---NALLGHRRLSIVDLSGGRQPMIKEG-GKYAIVYNGE 76 (542)
T ss_pred CCceeeeecccccccchHHHHHHHHHhhccCCCccccEecC---CceeeeeEEEEeccccCCCCcccCC-CcEEEEECCE
Confidence 999999999751111 2345567889999999999999954 7899999999999988999999966 7799999999
Q ss_pred EcChHHHHHHHHhc
Q psy15141 80 IYNFKRLGVQVRSQ 93 (95)
Q Consensus 80 IyN~~eL~~~L~~~ 93 (95)
|||+.|||++|..+
T Consensus 77 IYN~~elr~~l~~~ 90 (542)
T COG0367 77 IYNVEELRKELREA 90 (542)
T ss_pred eeeHHHHHHHHHhc
Confidence 99999999999863
No 4
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=99.94 E-value=3.1e-27 Score=177.63 Aligned_cols=87 Identities=31% Similarity=0.526 Sum_probs=73.8
Q ss_pred CeeEEEEeCCCCCCcc--cHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEee
Q psy15141 1 MCGIWAIFGHETSNYL--TSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNG 78 (95)
Q Consensus 1 McGI~g~~~~~~~~~~--~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NG 78 (95)
||||+|+++.+.+... .....|+.+|+|||||++++|..+ .++|||+||+|+|+..+.||+.+.+ ++++|+|||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~---~~~Lgh~RLsI~d~~~g~QP~~~~~-~~~~lv~NG 76 (578)
T PLN02549 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNE---DCYLAHERLAIMDPESGDQPLYNED-KTIVVTANG 76 (578)
T ss_pred CCcEEEEEeCCCCcchhHHHHHHHHHHhcCcCCCccCEEEeC---CeEEEEeeeeEeCCCCCCCCcCcCC-CCEEEEEEE
Confidence 9999999975322211 223456789999999999999875 5789999999999988999999987 889999999
Q ss_pred eEcChHHHHHHHH
Q psy15141 79 EIYNFKRLGVQVR 91 (95)
Q Consensus 79 eIyN~~eL~~~L~ 91 (95)
||||+.+||++|.
T Consensus 77 EIyN~~eLr~~L~ 89 (578)
T PLN02549 77 EIYNHKELREKLK 89 (578)
T ss_pred EEEcHHHHHHHHH
Confidence 9999999999986
No 5
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=99.94 E-value=4.4e-27 Score=177.17 Aligned_cols=89 Identities=27% Similarity=0.448 Sum_probs=74.7
Q ss_pred CeeEEEEeCCCCCCc-ccHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCC-CCCCcEEeCCCCcEEEEEee
Q psy15141 1 MCGIWAIFGHETSNY-LTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSL-YGMQPMKLHRYPRVTLICNG 78 (95)
Q Consensus 1 McGI~g~~~~~~~~~-~~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~-~~~QP~~~~~~~~~~lv~NG 78 (95)
||||+|++..+.... ......|+.+|+|||||++|+|..+ +++|||+||+|+|++ .+.||+.+.+ ++++|||||
T Consensus 1 McGI~G~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~---~~~lgh~rl~i~~~~~~~~QP~~~~~-~~~~~v~nG 76 (589)
T TIGR03104 1 MCGICGEIRFDGQAPDVAAVVRMLAVLAPRGPDAGGVHAQG---PVALGHRRLKIIDLSEASQQPMVDAE-LGLALVFNG 76 (589)
T ss_pred CcEEEEEEecCCCcchHHHHHHHHHhhcCCCCCcCCcEecC---CEEEEEEeeEecCCCcCCCCCeECCC-CCEEEEECC
Confidence 999999996532221 1233457789999999999999875 689999999999984 7999999887 889999999
Q ss_pred eEcChHHHHHHHHhc
Q psy15141 79 EIYNFKRLGVQVRSQ 93 (95)
Q Consensus 79 eIyN~~eL~~~L~~~ 93 (95)
||||+.|||++|+.+
T Consensus 77 eiyN~~eL~~~l~~~ 91 (589)
T TIGR03104 77 CIYNYRELRAELEAL 91 (589)
T ss_pred EecCHHHHHHHHHhc
Confidence 999999999999764
No 6
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=99.94 E-value=6.7e-27 Score=176.99 Aligned_cols=89 Identities=31% Similarity=0.470 Sum_probs=75.0
Q ss_pred CeeEEEEeCCCCCCcc--cHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEee
Q psy15141 1 MCGIWAIFGHETSNYL--TSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNG 78 (95)
Q Consensus 1 McGI~g~~~~~~~~~~--~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NG 78 (95)
||||+|++..+.+... .....|+.+|+|||||++++|..+ +++|||+||+|+|++.+.||+.+.+ ++++|||||
T Consensus 1 McGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~---~~~lgh~rl~i~d~~~~~qP~~~~~-~~~~lv~nG 76 (628)
T TIGR03108 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEP---GIGLGHRRLSIIDLSGGQQPLFNED-GSVVVVFNG 76 (628)
T ss_pred CCEEEEEEECCCCccccHHHHHHHHHHhcCCCCCccCeEeeC---CEEEEEEeeeecCCCCCCCCcCcCC-CCEEEEECC
Confidence 9999999965322111 233446789999999999999875 6899999999999878999999887 889999999
Q ss_pred eEcChHHHHHHHHhc
Q psy15141 79 EIYNFKRLGVQVRSQ 93 (95)
Q Consensus 79 eIyN~~eL~~~L~~~ 93 (95)
||||+.||+++|+.+
T Consensus 77 ei~N~~eL~~~l~~~ 91 (628)
T TIGR03108 77 EIYNFQELVAELQAL 91 (628)
T ss_pred eECCHHHHHHHHHhc
Confidence 999999999999764
No 7
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.94 E-value=3.7e-26 Score=167.60 Aligned_cols=91 Identities=19% Similarity=0.308 Sum_probs=74.5
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||+|+++.. + .......++.+|+|||||++|++..+. .+.++|||+||+|+|
T Consensus 1 MCGI~G~~~~~-~-~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at~g 78 (445)
T PRK08525 1 MCAVVGVINSK-N-AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYSTAG 78 (445)
T ss_pred CceEEEEEcCc-c-HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeecccccCC
Confidence 99999999863 2 223345678999999999999987431 145799999999999
Q ss_pred CC--CCCCcEEe--CCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKL--HRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~--~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.||+.+ .+ ++++|+|||+|||+.+||++|++++
T Consensus 79 ~~~~~naqP~~~~~~~-g~~~lvhNG~I~N~~eLr~~L~~~G 119 (445)
T PRK08525 79 NDSILDAQPVFARYDL-GEIAIVHNGNLVNKKEVRSRLIQDG 119 (445)
T ss_pred CCCCCCCCCeEeecCC-CCEEEEEEEEEECHHHHHHHHHhcC
Confidence 63 78999997 44 7899999999999999999998653
No 8
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.93 E-value=7.2e-26 Score=152.63 Aligned_cols=89 Identities=18% Similarity=0.283 Sum_probs=73.8
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeecC
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~~ 57 (95)
|||+|+++.. . .......++.+|+|||||+.|++..++ .+.++|||+||++.+.
T Consensus 1 CGI~G~~~~~-~-~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~ 78 (215)
T cd00714 1 CGIVGYIGKR-E-AVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATHGE 78 (215)
T ss_pred CEEEEEEcCc-c-HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCCCC
Confidence 9999999852 2 233455678899999999999997632 1457899999999997
Q ss_pred --CCCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 58 --LYGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 58 --~~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
..+.|||...+ ++++++|||+|||+.+||++|+++
T Consensus 79 ~~~~n~qPf~~~~-~~~~~vhNG~I~N~~~Lr~~L~~~ 115 (215)
T cd00714 79 PTDVNAHPHRSCD-GEIAVVHNGIIENYAELKEELEAK 115 (215)
T ss_pred CCccCCCCCCcCC-CCEEEEEeEEEcCHHHHHHHHHhc
Confidence 36899999876 789999999999999999999764
No 9
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=99.93 E-value=6e-26 Score=149.78 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=70.1
Q ss_pred CeeEEEEeCCCCCCc--ccHhhHHhhhccccCCCccceEEecCC-CeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEe
Q psy15141 1 MCGIWAIFGHETSNY--LTSCEHNFVKIQHRGPDAWRIEYDNHV-KKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICN 77 (95)
Q Consensus 1 McGI~g~~~~~~~~~--~~~~~~~~~~l~hRGpD~~g~~~~~~~-~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~N 77 (95)
||||+|+++...... ......|+.+|+|||||+++++..... +.+.|+|+||++++...+.||+.+.+ ++++|+||
T Consensus 1 MCGI~~~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~-~~~~lv~N 79 (181)
T cd03766 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQS-TGNVLQWN 79 (181)
T ss_pred CCcEEEEEeCCCCcccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCC-CCEEEEEC
Confidence 999999997532210 122345678999999999999986421 35889999999999877899999876 78999999
Q ss_pred eeEcChHHHHH
Q psy15141 78 GEIYNFKRLGV 88 (95)
Q Consensus 78 GeIyN~~eL~~ 88 (95)
|||||+.+||+
T Consensus 80 GeIyN~~~l~~ 90 (181)
T cd03766 80 GELYNIDGVED 90 (181)
T ss_pred CEEECcccccC
Confidence 99999999874
No 10
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.92 E-value=7.6e-25 Score=161.54 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=74.8
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-----------------------CCeeEEEEEEeeeecC
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-----------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-----------------------~~~~~lgh~rl~i~~~ 57 (95)
||||+|+++.. ......+.++.+|+|||+|+.|++..+. .+++++||+||+|.|.
T Consensus 19 mCGI~G~~~~~--~~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~G~ 96 (474)
T PRK06388 19 DCAVVGFKGGI--NAYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTAGS 96 (474)
T ss_pred CCeEEEEECCc--chHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeecCC
Confidence 99999999863 2334556679999999999999987432 2457999999999996
Q ss_pred C--CCCCcEEeC-CCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 58 L--YGMQPMKLH-RYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 58 ~--~~~QP~~~~-~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
. .+.||+... ..++++|||||+|||+++||++|++++
T Consensus 97 ~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G 136 (474)
T PRK06388 97 KGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEG 136 (474)
T ss_pred CCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCC
Confidence 4 789999743 227899999999999999999998764
No 11
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.92 E-value=9.8e-25 Score=161.22 Aligned_cols=91 Identities=24% Similarity=0.411 Sum_probs=74.5
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-------------------------CCeeEEEEEEeeee
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-------------------------VKKTYVGFHRLEIV 55 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-------------------------~~~~~lgh~rl~i~ 55 (95)
||||||+++.. + .......++.+|+|||||+.|++..+. .+++++||+||+|.
T Consensus 11 mCGI~Gi~~~~-~-~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~RysT~ 88 (484)
T PRK07272 11 ECGVFGIWGHP-D-AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYATA 88 (484)
T ss_pred cCeEEEEECCc-c-HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeecccc
Confidence 99999999862 2 233455678899999999999987531 14589999999999
Q ss_pred cCC--CCCCcEEeC--CCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 56 DSL--YGMQPMKLH--RYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 56 ~~~--~~~QP~~~~--~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+.. .+.||+... + ++++|+|||+|||+.+||++|++++
T Consensus 89 G~~~~~naqP~~~~~~~-g~ialvhNG~I~N~~eLr~~L~~~G 130 (484)
T PRK07272 89 GSASIENIQPFLFHFHD-MQFGLAHNGNLTNAVSLRKELEKQG 130 (484)
T ss_pred CCCCcCCCCCEEeecCC-CCEEEEEEEEEeCHHHHHHHHHhCC
Confidence 964 689999863 4 7899999999999999999998754
No 12
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.92 E-value=1e-24 Score=161.04 Aligned_cols=91 Identities=21% Similarity=0.303 Sum_probs=74.5
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-------------------------CCeeEEEEEEeeee
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-------------------------VKKTYVGFHRLEIV 55 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-------------------------~~~~~lgh~rl~i~ 55 (95)
||||||+++.. + .......++.+|+|||||+.|+...+. .++++|||+||+|.
T Consensus 21 mCGI~Gi~~~~-~-~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~sT~ 98 (479)
T PRK09123 21 ECGVFGILGHP-D-AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYSTT 98 (479)
T ss_pred cCeEEEEEcCc-c-hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecccC
Confidence 99999999863 2 233455678899999999999987431 14578999999999
Q ss_pred cCC--CCCCcEEeC--CCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 56 DSL--YGMQPMKLH--RYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 56 ~~~--~~~QP~~~~--~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+.. .+.|||.+. + ++++|+|||+|||+.+||++|++++
T Consensus 99 G~~~~~n~QP~~~~~~~-g~~alvhNG~I~N~~eLr~~L~~~G 140 (479)
T PRK09123 99 GETILRNVQPLFAELEF-GGLAIAHNGNLTNALTLRRELIRRG 140 (479)
T ss_pred CCCCcCCCCCceeecCC-CCEEEEEEEEEeCHHHHHHHHHhCC
Confidence 963 789999874 4 7899999999999999999998654
No 13
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.4e-24 Score=160.85 Aligned_cols=93 Identities=20% Similarity=0.295 Sum_probs=74.3
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||||+++.+.+ .....+.++.+|+|||||+.|+...+. .++++|||+||+|+|
T Consensus 33 mCGI~Gi~~~~~~-~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT~G 111 (500)
T PRK07349 33 ACGVFGVYAPGEE-VAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYSTTG 111 (500)
T ss_pred CCeEEEEECCCcC-HHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeecccCC
Confidence 9999999985322 223345678999999999999977431 245799999999999
Q ss_pred CC--CCCCcEEeCC-CCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKLHR-YPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~~~-~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.|||.... .++++|+|||+|||+.+||++|++++
T Consensus 112 ~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G 152 (500)
T PRK07349 112 SSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARG 152 (500)
T ss_pred CCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCC
Confidence 74 6899998642 27799999999999999999998754
No 14
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.4e-24 Score=160.04 Aligned_cols=91 Identities=25% Similarity=0.398 Sum_probs=73.7
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||||+++.. + .......++.+|+|||||+.|++..+. .+++++||+||+|.+
T Consensus 11 mCGI~Gi~~~~-~-~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT~G 88 (475)
T PRK07631 11 ECGVFGIWGHE-E-AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYATAG 88 (475)
T ss_pred CCcEEEEECCc-h-hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccccC
Confidence 99999999852 2 223344678899999999999986321 256889999999999
Q ss_pred CC--CCCCcEE--eCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMK--LHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~--~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.||+. +.+ ++++|+|||+|||+++||++|++++
T Consensus 89 ~~~~~n~QP~~~~~~~-g~ialvhNG~I~N~~eLr~~L~~~G 129 (475)
T PRK07631 89 GGGYENVQPLLFRSQT-GSLALAHNGNLVNATQLKLQLENQG 129 (475)
T ss_pred CCCcCCcCCeEeEcCC-CCEEEEEEEEEECHHHHHHHHHhCC
Confidence 74 6899996 334 7899999999999999999998754
No 15
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.92 E-value=2.3e-24 Score=157.94 Aligned_cols=91 Identities=24% Similarity=0.385 Sum_probs=75.7
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-----------------------CCeeEEEEEEeeeecC
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-----------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-----------------------~~~~~lgh~rl~i~~~ 57 (95)
||||||+++. + .......++.+|+|||+|+.|+...+. .+++++||+||+|+|.
T Consensus 4 ~CGI~G~~~~--~-~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~G~ 80 (442)
T PRK08341 4 KCGIFAAYSE--N-APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTSGS 80 (442)
T ss_pred ccEEEEEECC--C-cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeeccccCC
Confidence 8999999983 2 334566789999999999999976432 2578999999999998
Q ss_pred CCCCCcEEeCC-CCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 58 LYGMQPMKLHR-YPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 58 ~~~~QP~~~~~-~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
..+.||+...+ .++++|+|||+|||+.+||++|++++
T Consensus 81 ~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G 118 (442)
T PRK08341 81 LSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRG 118 (442)
T ss_pred CcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcC
Confidence 78899998642 27899999999999999999998764
No 16
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.91 E-value=2.1e-24 Score=162.86 Aligned_cols=91 Identities=21% Similarity=0.288 Sum_probs=75.0
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||+|+++.. + .......++.+|+|||||+.|++.... .+.++|||+||++.|
T Consensus 1 MCGI~g~~~~~-~-~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at~g 78 (604)
T PRK00331 1 MCGIVGYVGQR-N-AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWATHG 78 (604)
T ss_pred CcEEEEEEcCc-c-HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCCCC
Confidence 99999999753 2 234456678899999999999987321 245789999999999
Q ss_pred CC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.|||.+.+ ++++++|||+|||+++||++|.+++
T Consensus 79 ~~~~~n~qP~~~~~-~~~~~vhNG~I~N~~~Lr~~l~~~g 117 (604)
T PRK00331 79 KPTERNAHPHTDCS-GRIAVVHNGIIENYAELKEELLAKG 117 (604)
T ss_pred CCccccCCccccCC-CCEEEEEeEEEcCHHHHHHHHHhCC
Confidence 63 6899999766 7899999999999999999998653
No 17
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.91 E-value=2.9e-24 Score=159.52 Aligned_cols=91 Identities=29% Similarity=0.337 Sum_probs=73.7
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||||+++.+ + .......++.+|+|||||+.|++..+. .+.++|||+||+|.|
T Consensus 1 MCGI~Gi~~~~-~-~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G 78 (501)
T PRK09246 1 MCGIVGIVGHS-P-VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPTAG 78 (501)
T ss_pred CceEEEEEcCc-C-HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCcCC
Confidence 99999999862 2 223445678899999999999987421 257899999999999
Q ss_pred CC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 57 SL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 57 ~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
.+ .+.|||..+...+++|+|||+|||+++||++|+++
T Consensus 79 ~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~ 117 (501)
T PRK09246 79 SSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEK 117 (501)
T ss_pred CCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhc
Confidence 74 79999985322569999999999999999999875
No 18
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.91 E-value=5e-24 Score=157.17 Aligned_cols=91 Identities=25% Similarity=0.423 Sum_probs=73.5
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||||+++.. + .......++.+|+|||||+.|++..+. .+++++||+|++|.+
T Consensus 11 mCGI~Gi~~~~-~-~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT~G 88 (471)
T PRK06781 11 ECGVFGIWGHE-N-AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYATAG 88 (471)
T ss_pred cCeEEEEEcCc-c-HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEcccCC
Confidence 99999999863 2 223344678899999999999985321 245789999999999
Q ss_pred CC--CCCCcEEe--CCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKL--HRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~--~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.|||.. .+ ++++|+|||+|||+++||++|++++
T Consensus 89 ~~~~~naqP~~~~~~~-g~~alvhNG~I~N~~eLr~~L~~~G 129 (471)
T PRK06781 89 GSEVANVQPLLFRFSD-HSMALAHNGNLINAKMLRRELEAEG 129 (471)
T ss_pred CCCcCCCCCeEEecCC-CCEEEEEEEEEcCHHHHHHHHHhCC
Confidence 74 78999964 34 7899999999999999999998754
No 19
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=99.91 E-value=9.3e-24 Score=142.41 Aligned_cols=88 Identities=35% Similarity=0.583 Sum_probs=73.9
Q ss_pred eeEEEEeCCCCCCc-ccHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEeeeE
Q psy15141 2 CGIWAIFGHETSNY-LTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEI 80 (95)
Q Consensus 2 cGI~g~~~~~~~~~-~~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGeI 80 (95)
|||+|+++.+.... ......|+.+|+|||||+.+++..+ .++|+|+||++.+...+.||+...+ ++++++|||||
T Consensus 1 cGI~g~~~~~~~~~~~~~~~~~~~~l~hRGpd~~~~~~~~---~~~lgh~rl~~~~~~~~~qP~~~~~-~~~~~~~nG~i 76 (220)
T cd00712 1 CGIAGIIGLDGASVDRATLERMLDALAHRGPDGSGIWIDE---GVALGHRRLSIIDLSGGAQPMVSED-GRLVLVFNGEI 76 (220)
T ss_pred CeEEEEEeCCCCcchHHHHHHHHHHHhccCCCCCCEEEEC---CEEEEEEeeeecCcccCCCCeEeCC-CCEEEEEEEEE
Confidence 99999997532111 2234457889999999999999875 6899999999999878899999887 78999999999
Q ss_pred cChHHHHHHHHhc
Q psy15141 81 YNFKRLGVQVRSQ 93 (95)
Q Consensus 81 yN~~eL~~~L~~~ 93 (95)
||+.+|+++|..+
T Consensus 77 ~N~~~L~~~l~~~ 89 (220)
T cd00712 77 YNYRELRAELEAL 89 (220)
T ss_pred eCHHHHHHHHHhc
Confidence 9999999998654
No 20
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.91 E-value=2.9e-24 Score=163.14 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=75.0
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-------------------------------CCeeEEEE
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-------------------------------VKKTYVGF 49 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-------------------------------~~~~~lgh 49 (95)
||||+|+++.. ........++.+|+|||||++|+....+ .+.+++||
T Consensus 24 MCGI~G~~~~~--~~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~igH 101 (640)
T PTZ00295 24 CCGIVGYLGNE--DASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGIAH 101 (640)
T ss_pred CCeEEEEEcCc--chHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEEEE
Confidence 99999999853 2334556678999999999999988421 13468999
Q ss_pred EEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 50 HRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 50 ~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+||+|+|.. .+.|||.+.+ ++++++|||+|||+.+||++|++++
T Consensus 102 ~R~at~g~~~~~n~qP~~~~~-~~~~~vhNG~I~N~~~Lr~~L~~~g 147 (640)
T PTZ00295 102 TRWATHGGKTDENAHPHCDYK-KRIALVHNGTIENYVELKSELIAKG 147 (640)
T ss_pred eccccCCCCCcCCCCCCCCCC-CCEEEEEEEEEcCHHHHHHHHHHCC
Confidence 999999963 7899999766 7899999999999999999998754
No 21
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.91 E-value=4.5e-24 Score=158.45 Aligned_cols=92 Identities=21% Similarity=0.297 Sum_probs=74.1
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||+|+++...+ .....+.++.+|+|||||+.|+.+.+. .++++|||+||+|.+
T Consensus 23 mCGI~Gi~~~~~~-~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT~G 101 (510)
T PRK07847 23 ECGVFGVWAPGEE-VAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYSTTG 101 (510)
T ss_pred cCeEEEEECCCcC-HHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCcCC
Confidence 9999999986322 222345678999999999999877432 145789999999999
Q ss_pred CC--CCCCcEEeC---CCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKLH---RYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~~---~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.|||... . ++++|+|||+|||+.+||++|++++
T Consensus 102 ~~~~~naQP~~~~~~~~-g~ialvHNG~I~N~~eLr~~L~~~G 143 (510)
T PRK07847 102 ASTWENAQPTFRATAAG-GGVALGHNGNLVNTAELAARARDRG 143 (510)
T ss_pred CCcccCCCCcCcccCCC-CCEEEEEEEEEeCHHHHHHHHHhcC
Confidence 75 689999863 3 7899999999999999999998754
No 22
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.90 E-value=1.2e-23 Score=155.20 Aligned_cols=93 Identities=16% Similarity=0.307 Sum_probs=74.1
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||+|+++.+........+.++.+|+|||||+.|++..+. .+.++|||+|++|.+
T Consensus 14 mCGI~Gi~~~~~~~~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT~G 93 (469)
T PRK05793 14 ECGVFGVFSKNNIDVASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYSTTG 93 (469)
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeecccCC
Confidence 99999999863211122345578899999999999986431 246789999999999
Q ss_pred CC--CCCCcEEeC--CCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKLH--RYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~~--~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+.|||... + ++++|+|||+|||+.+||++|++++
T Consensus 94 ~~~~~n~qPf~~~~~~-g~~alvhNG~I~N~~eLr~~L~~~g 134 (469)
T PRK05793 94 ASDLDNAQPLVANYKL-GSIAIAHNGNLVNADVIRELLEDGG 134 (469)
T ss_pred CCCCCCCCCeEeecCC-CCEEEEEEEEEeCHHHHHHHHHhcC
Confidence 74 689999874 4 7899999999999999999998653
No 23
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=99.90 E-value=9.9e-24 Score=155.20 Aligned_cols=86 Identities=33% Similarity=0.460 Sum_probs=70.9
Q ss_pred EEEEeCCCCCCccc--HhhHHhhhccccCCCccceE-EecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEeeeE
Q psy15141 4 IWAIFGHETSNYLT--SCEHNFVKIQHRGPDAWRIE-YDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEI 80 (95)
Q Consensus 4 I~g~~~~~~~~~~~--~~~~~~~~l~hRGpD~~g~~-~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGeI 80 (95)
|+|++..+...... ....|+.+|+|||||++++| ..+ +++|||+||+|+|++.+.||+.+.+ ++++|||||||
T Consensus 1 i~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~---~~~lgh~rl~i~d~~~~~qP~~~~~-~~~~lv~nGei 76 (467)
T TIGR01536 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDG---NAILGHRRLAIIDLSGGAQPMSNEG-KTYVIVFNGEI 76 (467)
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhCcCCCcCCcEEccC---CEEEEEEEeEEeCCCCCCCeeECCC-CCEEEEEeeEE
Confidence 67888764332211 23446779999999999999 654 7899999999999977799999987 88999999999
Q ss_pred cChHHHHHHHHhc
Q psy15141 81 YNFKRLGVQVRSQ 93 (95)
Q Consensus 81 yN~~eL~~~L~~~ 93 (95)
||+.||+++|..+
T Consensus 77 yN~~eL~~~l~~~ 89 (467)
T TIGR01536 77 YNHEELREELEAK 89 (467)
T ss_pred cCHHHHHHHHHhc
Confidence 9999999999764
No 24
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.90 E-value=2.2e-23 Score=159.28 Aligned_cols=94 Identities=20% Similarity=0.256 Sum_probs=74.4
Q ss_pred CeeEEEEeCCC----CCCcccHhhHHhhhccccCCCccceEEecC-----------------------------------
Q psy15141 1 MCGIWAIFGHE----TSNYLTSCEHNFVKIQHRGPDAWRIEYDNH----------------------------------- 41 (95)
Q Consensus 1 McGI~g~~~~~----~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~----------------------------------- 41 (95)
||||||+++.. ........+..+.+|+|||+|+.|++..++
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~ 80 (680)
T PLN02981 1 MCGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNL 80 (680)
T ss_pred CceEEEEEccCCccccccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhcccccccc
Confidence 99999999853 112223445578999999999999987432
Q ss_pred ----CCeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 42 ----VKKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 42 ----~~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.+++++||+||+|.|.. .+.||+.....+.++|||||+|||+.+||++|++++
T Consensus 81 ~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G 139 (680)
T PLN02981 81 DLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHG 139 (680)
T ss_pred ccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCC
Confidence 13478999999999963 688999864326799999999999999999998764
No 25
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.89 E-value=3.5e-23 Score=142.31 Aligned_cols=90 Identities=20% Similarity=0.357 Sum_probs=72.3
Q ss_pred eeEEEEeCCCC-CCcccHhhHHhhhccccCC-CccceEEecC---------------------------------CCeeE
Q psy15141 2 CGIWAIFGHET-SNYLTSCEHNFVKIQHRGP-DAWRIEYDNH---------------------------------VKKTY 46 (95)
Q Consensus 2 cGI~g~~~~~~-~~~~~~~~~~~~~l~hRGp-D~~g~~~~~~---------------------------------~~~~~ 46 (95)
|||+|+++... .........++.+|+|||| |+.|++.... .+.++
T Consensus 1 CGI~G~~~~~~~~~~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~~ 80 (249)
T cd01907 1 CGIFGIMSKDGEPFVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYHW 80 (249)
T ss_pred CcEEEEEecCCccccHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEEE
Confidence 99999998631 1123345667899999999 9999988521 14678
Q ss_pred EEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 47 VGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 47 lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
|||+|+++.+.. .+.|||.. ++++++|||+|||+.+||++|++++
T Consensus 81 igH~R~aT~g~~~~~n~qP~~~---~~~~lvhNG~I~N~~~lr~~L~~~g 127 (249)
T cd01907 81 IAHTRQPTNSAVWWYGAHPFSI---GDIAVVHNGEISNYGSNREYLERFG 127 (249)
T ss_pred EEEEeccCCCCCCccCCCCeec---CCEEEEeCCeecCHHHHHHHHHhcC
Confidence 999999999853 68999987 4699999999999999999997653
No 26
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.89 E-value=2.9e-23 Score=156.75 Aligned_cols=89 Identities=19% Similarity=0.291 Sum_probs=73.4
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeecC
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~~ 57 (95)
|||+|+++.. + .......++.+|+|||||++|++..+. .+.++|||+||+|.|.
T Consensus 1 CGI~g~~~~~-~-~~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g~ 78 (607)
T TIGR01135 1 CGIVGYIGQR-D-AVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATHGK 78 (607)
T ss_pred CeEEEEECCc-c-HHHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCCCC
Confidence 9999999752 2 223456678899999999999987421 2357899999999996
Q ss_pred C--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 58 L--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 58 ~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
. .+.|||...+ ++++++|||+|||+++||++|.++
T Consensus 79 ~~~~n~qP~~~~~-~~~~~vhNG~I~N~~~Lr~~L~~~ 115 (607)
T TIGR01135 79 PTEENAHPHTDEG-GRIAVVHNGIIENYAELREELEAR 115 (607)
T ss_pred CCccCCCCcCcCC-CCEEEEEecccCCHHHHHHHHHhC
Confidence 3 6899999876 789999999999999999999864
No 27
>PLN02440 amidophosphoribosyltransferase
Probab=99.89 E-value=5.3e-23 Score=152.12 Aligned_cols=91 Identities=22% Similarity=0.409 Sum_probs=73.4
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||+|+++.. + .......++.+|+|||||+.|++..+. .+.++|||+|+++.+
T Consensus 1 MCGI~Gi~~~~-~-~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT~G 78 (479)
T PLN02440 1 ECGVVGIFGDP-E-ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYSTAG 78 (479)
T ss_pred CceEEEEECCc-c-HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccccC
Confidence 99999999752 2 233455678899999999999986321 246789999999999
Q ss_pred CC--CCCCcEEeC-CCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 57 SL--YGMQPMKLH-RYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 57 ~~--~~~QP~~~~-~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
.. .+.|||... ..++++|+|||+|||+.+||++|+.+
T Consensus 79 ~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~ 118 (479)
T PLN02440 79 ASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEEN 118 (479)
T ss_pred CCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhc
Confidence 63 799999863 12679999999999999999999865
No 28
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.89 E-value=4.6e-23 Score=157.28 Aligned_cols=93 Identities=20% Similarity=0.349 Sum_probs=75.1
Q ss_pred CeeEEEEeCCCC----CCcccHhhHHhhhccccCCCccceEEe-c---------------C-------------------
Q psy15141 1 MCGIWAIFGHET----SNYLTSCEHNFVKIQHRGPDAWRIEYD-N---------------H------------------- 41 (95)
Q Consensus 1 McGI~g~~~~~~----~~~~~~~~~~~~~l~hRGpD~~g~~~~-~---------------~------------------- 41 (95)
||||||+++... .......+..+.+|+|||.|+.|+... + .
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~ 80 (670)
T PTZ00394 1 MCGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVF 80 (670)
T ss_pred CceEEEEECCCCccccccHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHh
Confidence 999999998631 112234455789999999999999886 1 1
Q ss_pred ---------------CCeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 42 ---------------VKKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 42 ---------------~~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.++++|||+||+|+|.. .+.||+.+.+ ++++|||||+||||.+||++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~-~~i~vvhNG~I~N~~eLr~~L~~~g 149 (670)
T PTZ00394 81 SEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNN-GEFTIVHNGIVTNYMTLKELLKEEG 149 (670)
T ss_pred cchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCC-CCEEEEECeeEecHHHHHHHHHHcC
Confidence 12478999999999973 6889999876 8899999999999999999998764
No 29
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=99.88 E-value=6.4e-22 Score=136.04 Aligned_cols=90 Identities=23% Similarity=0.387 Sum_probs=72.3
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeecC
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~~ 57 (95)
|||+|+++.. + .......++.+|+|||||+.|++..+. .+.++|||+|+++.+.
T Consensus 1 Cgi~g~~~~~-~-~~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~g~ 78 (252)
T cd00715 1 CGVFGIYGAE-D-AARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTAGS 78 (252)
T ss_pred CEEEEEECCc-c-hHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccCCC
Confidence 9999999863 2 234455678999999999999986532 1346899999999997
Q ss_pred C--CCCCcEEeC-CCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 58 L--YGMQPMKLH-RYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 58 ~--~~~QP~~~~-~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
. .+.|||... .+++++++|||+|||+.+||++|..+
T Consensus 79 ~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~ 117 (252)
T cd00715 79 SSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEE 117 (252)
T ss_pred CCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHC
Confidence 4 689999863 12679999999999999999999754
No 30
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.86 E-value=4.1e-21 Score=140.97 Aligned_cols=91 Identities=22% Similarity=0.348 Sum_probs=71.8
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeecC
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~~ 57 (95)
|||||+++.. +........++.+|+|||||+.|++..+. .++++|||+|+++.+.
T Consensus 1 CGI~Gi~~~~-~~~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~G~ 79 (442)
T TIGR01134 1 CGVVGIYSQE-EDAASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTAGS 79 (442)
T ss_pred CEEEEEEcCC-ccHHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCCCC
Confidence 9999999863 11223345678899999999999986431 2468899999999997
Q ss_pred C--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 58 L--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 58 ~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
. .+.|||..+..++++++|||+|||+.+||++|+.+
T Consensus 80 ~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~ 117 (442)
T TIGR01134 80 SSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEE 117 (442)
T ss_pred CCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhc
Confidence 3 68999985321559999999999999999999764
No 31
>KOG0571|consensus
Probab=99.83 E-value=9.3e-21 Score=137.09 Aligned_cols=87 Identities=38% Similarity=0.581 Sum_probs=72.2
Q ss_pred CeeEEEEeCCCCCCc-ccHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEeee
Q psy15141 1 MCGIWAIFGHETSNY-LTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGE 79 (95)
Q Consensus 1 McGI~g~~~~~~~~~-~~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGe 79 (95)
||||++++..+.... ..+.....+++.|||||-++.+...+ ..|+|.||+|+|+..+.||++..+ +.+++..|||
T Consensus 1 MCGI~Av~~~~~~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~---~~l~heRLAIvdp~sg~QPi~~~~-~~~~~~vNGE 76 (543)
T KOG0571|consen 1 MCGILAVLGHEDSEAKKPKALELSRRIRHRGPDWSGLAQRND---NILGHERLAIVDPTSGAQPIVGED-GTYVVTVNGE 76 (543)
T ss_pred CCceeeeecccchhhcChhhhhHHHhhcCCCCCcchhheecc---ccccccceeEecCCcCCcccccCC-CcEEEEECce
Confidence 999999998431111 22344557799999999999988763 379999999999988999999988 8888889999
Q ss_pred EcChHHHHHHHH
Q psy15141 80 IYNFKRLGVQVR 91 (95)
Q Consensus 80 IyN~~eL~~~L~ 91 (95)
||||++||+.++
T Consensus 77 IYNH~~Lr~~~~ 88 (543)
T KOG0571|consen 77 IYNHKKLREHCK 88 (543)
T ss_pred eccHHHHHHHhh
Confidence 999999999876
No 32
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.83 E-value=4e-20 Score=134.46 Aligned_cols=94 Identities=24% Similarity=0.396 Sum_probs=75.9
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecCC-------------------------CeeEEEEEEeeee
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNHV-------------------------KKTYVGFHRLEIV 55 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~~-------------------------~~~~lgh~rl~i~ 55 (95)
||||||+++.+..+.....+.++.+|||||+|+.|+...+.. +.+++||+|+++.
T Consensus 4 ~CGV~Gi~~~~~~~a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYsTa 83 (470)
T COG0034 4 MCGVFGIWGHKDNNAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYSTA 83 (470)
T ss_pred cceEEEEecCCccchHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeecCC
Confidence 999999998743212334566799999999999999776531 2458999999999
Q ss_pred cCC--CCCCcEEeCCC-CcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 56 DSL--YGMQPMKLHRY-PRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 56 ~~~--~~~QP~~~~~~-~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
|.+ .+.|||..+.. +.++|+|||.|-|..+||++|++++
T Consensus 84 G~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g 125 (470)
T COG0034 84 GSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEG 125 (470)
T ss_pred CCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcC
Confidence 964 78899987641 5699999999999999999998765
No 33
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=2e-20 Score=140.16 Aligned_cols=90 Identities=19% Similarity=0.263 Sum_probs=74.8
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeec
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
||||+|+++.+.+ ........+++|.+||.|+.|+.+.++ .+.+++||+||+++|
T Consensus 1 MCGIvG~i~~~~~-~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWATHG 79 (597)
T COG0449 1 MCGIVGYIGFLRE-AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWATHG 79 (597)
T ss_pred CCcEEEEEcCCcc-HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCceeeeeccccCCC
Confidence 9999999975322 233455679999999999999987642 157899999999999
Q ss_pred CC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 SL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
.. .+++|..+ +++++||||-|-||.+||++|+++|
T Consensus 80 ~P~~~NAHPh~~---~~~avVHNGIIeN~~eLr~eL~~~G 116 (597)
T COG0449 80 GPTRANAHPHSD---GEFAVVHNGIIENFAELKEELEAKG 116 (597)
T ss_pred CCCcCCCCCCCC---CCEEEEeCchhhCHHHHHHHHHhcC
Confidence 64 78999976 6799999999999999999999875
No 34
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.80 E-value=6e-19 Score=117.65 Aligned_cols=90 Identities=28% Similarity=0.493 Sum_probs=72.0
Q ss_pred eeEEEEeCCCCCCcccHhh---HHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeee
Q psy15141 2 CGIWAIFGHETSNYLTSCE---HNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEI 54 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~---~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i 54 (95)
|||+|+++.+... ..... .++..++|||||+.|++..+. .+.++|+|+|+++
T Consensus 1 Cgi~g~~~~~~~~-~~~~~~~~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at 79 (220)
T cd00352 1 CGIFGIVGADGAA-SLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLAT 79 (220)
T ss_pred CEEEEEECCCCcc-hhhHHHHHHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeee
Confidence 9999999874322 22222 367799999999999988642 1257899999999
Q ss_pred ecC--CCCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 55 VDS--LYGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 55 ~~~--~~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
.+. ..+.|||.... ++++++|||+|||+.+|+++|..+
T Consensus 80 ~g~~~~~n~hPf~~~~-~~~~~~hNG~i~n~~~l~~~l~~~ 119 (220)
T cd00352 80 NGLPSEANAQPFRSED-GRIALVHNGEIYNYRELREELEAR 119 (220)
T ss_pred cCCCCCCCCCCcCcCC-CCEEEEECcEEEcHHHHHHHHHHC
Confidence 986 37899999876 689999999999999999998754
No 35
>KOG0572|consensus
Probab=99.75 E-value=4e-18 Score=122.02 Aligned_cols=94 Identities=21% Similarity=0.348 Sum_probs=73.1
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC-------------------------CCeeEEEEEEeeee
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH-------------------------VKKTYVGFHRLEIV 55 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~-------------------------~~~~~lgh~rl~i~ 55 (95)
||||+|++..+.-..........-+|||||+|+.|+...+. .+.+++||+|+++.
T Consensus 1 eCGv~Gi~~a~~~~~l~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYsTa 80 (474)
T KOG0572|consen 1 ECGVFGIVAAGEASRLPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYSTA 80 (474)
T ss_pred CCcEEEEEecCccccCcHHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecccc
Confidence 99999999863221112222223599999999999988752 25789999999999
Q ss_pred cCC--CCCCcEEeCCC-CcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 56 DSL--YGMQPMKLHRY-PRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 56 ~~~--~~~QP~~~~~~-~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+.+ .+.|||+-... +.++|+||||+-|+++||++|..++
T Consensus 81 G~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g 122 (474)
T KOG0572|consen 81 GSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEG 122 (474)
T ss_pred cccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcC
Confidence 986 78899987632 6699999999999999999997654
No 36
>KOG1268|consensus
Probab=99.75 E-value=6.1e-18 Score=124.84 Aligned_cols=94 Identities=19% Similarity=0.285 Sum_probs=76.7
Q ss_pred CeeEEEEeCCCCCCcccHh----hHHhhhccccCCCccceEEecC--------------------------------CCe
Q psy15141 1 MCGIWAIFGHETSNYLTSC----EHNFVKIQHRGPDAWRIEYDNH--------------------------------VKK 44 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~----~~~~~~l~hRGpD~~g~~~~~~--------------------------------~~~ 44 (95)
|||||++.++-...+..++ +..+++|.+||.|+.|+..++. ..+
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH 80 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISH 80 (670)
T ss_pred CcceeeeeccccCCcHHHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeee
Confidence 9999999987433233333 2347899999999999988752 146
Q ss_pred eEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 45 TYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 45 ~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
++++|+||++.|.. .+.+|+.+++++.+++||||-|-||++||..|++++
T Consensus 81 ~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG 132 (670)
T KOG1268|consen 81 CGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKG 132 (670)
T ss_pred eeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcC
Confidence 88999999999963 788999987657899999999999999999999775
No 37
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.54 E-value=8.9e-15 Score=92.23 Aligned_cols=58 Identities=28% Similarity=0.370 Sum_probs=48.5
Q ss_pred CCccce--EEecCCCeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHh
Q psy15141 31 PDAWRI--EYDNHVKKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRS 92 (95)
Q Consensus 31 pD~~g~--~~~~~~~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~ 92 (95)
||..++ +..+ .++|+|+|+++++.. .+.|||.+.+ ++++++|||+|+|+.+||++|..
T Consensus 1 pd~~~~~~~~~~---~~~lgH~R~AT~G~~~~~~~hPf~~~~-g~~~~~HNG~i~n~~~L~~~l~~ 62 (133)
T PF13522_consen 1 PDFEGLASWLDG---EAALGHTRYATVGSPTEENNHPFSNRD-GRIALAHNGNIDNYKELREELGE 62 (133)
T ss_pred CChHHHHHhcCC---CEEEEEeecCCCCCCCCcCCCCCcCCC-CCEEEEECCeecCHHHHHHHHHH
Confidence 677777 5543 689999999999974 5569995555 78999999999999999999986
No 38
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.36 E-value=2.2e-13 Score=84.86 Aligned_cols=44 Identities=34% Similarity=0.449 Sum_probs=18.3
Q ss_pred EEEeeeecCCCCCCcEE-eCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 49 FHRLEIVDSLYGMQPMK-LHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 49 h~rl~i~~~~~~~QP~~-~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
|+||+|.+...+.||++ +.+ ++++++|||||||++||+++|..+
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~-~~~~l~~nG~i~N~~eL~~~l~~~ 45 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSED-GELVLVFNGEIYNREELRRELEER 45 (125)
T ss_dssp -------------------------EEEEEEEES-HHHHHHTSSSS
T ss_pred Ccccccccccccccccccccc-cCEEEEEEEEEEChHHHHHHhhhc
Confidence 89999977778999999 565 789999999999999999998654
No 39
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.30 E-value=3.5e-12 Score=88.03 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=59.8
Q ss_pred CeeEEEEeCCCCCCcccHhh-HHhhhccccCC------------CccceEEec-C-------------------------
Q psy15141 1 MCGIWAIFGHETSNYLTSCE-HNFVKIQHRGP------------DAWRIEYDN-H------------------------- 41 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~-~~~~~l~hRGp------------D~~g~~~~~-~------------------------- 41 (95)
||+|+|+++.. ......+ ....+|.+|+- |+.|+.... .
T Consensus 1 MCr~~gy~g~~--~~l~~~l~~~~~sL~~qs~~~~~~~~~~~~~DGwGia~~~~~~~~~~~~~k~~~pa~~d~~l~~l~~ 78 (251)
T TIGR03442 1 MCRHLAYLGAP--VSLADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFASLAR 78 (251)
T ss_pred CceEeeecCCC--eeHHHheeCCCcchHHhCcchhhhcCCCcCCCcceEEEecCCCCCCceEEeCCCccccChhHHHHHh
Confidence 99999999863 1222222 22345555443 888885532 1
Q ss_pred --CCeeEEEEEEeeeecC--C-CCCCcEEeCCCCcEEEEEeeeEcChH-----HHHHHHH
Q psy15141 42 --VKKTYVGFHRLEIVDS--L-YGMQPMKLHRYPRVTLICNGEIYNFK-----RLGVQVR 91 (95)
Q Consensus 42 --~~~~~lgh~rl~i~~~--~-~~~QP~~~~~~~~~~lv~NGeIyN~~-----eL~~~L~ 91 (95)
...++|+|.|+++.+. . .+.|||.. ++++++|||.|-|++ +|+++|.
T Consensus 79 ~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~---g~~~~aHNG~i~n~~~~~r~~L~~~l~ 135 (251)
T TIGR03442 79 YVESGCVLAAVRSATVGMAIDESACAPFSD---GRWLFSHNGFVDNFRQTLYRPLRDRLP 135 (251)
T ss_pred hcccceEEEEeeeCCCCCCcchhcCCCCCc---CCEEEEeCCccCCchhhhhHHHHhcCC
Confidence 1356899999999983 3 68999995 679999999999998 4555554
No 40
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.14 E-value=8.6e-11 Score=81.09 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=41.8
Q ss_pred CeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 43 KKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 43 ~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
+.++|+|+|+++.+.. .+.|||.. ++++++|||.|+|+.+|+..|..+
T Consensus 80 ~~~~l~H~R~At~G~~~~~n~hPf~~---~~~~~~HNG~i~n~~~l~~~l~~~ 129 (257)
T cd01908 80 SPLVLAHVRAATVGPVSLENCHPFTR---GRWLFAHNGQLDGFRLLRRRLLRL 129 (257)
T ss_pred ccEEEEEEecCCCCCCccccCCCccc---CCEEEEeCCccCCcchhhHHHHhc
Confidence 4578999999999952 78999987 469999999999999999998764
No 41
>KOG0573|consensus
Probab=99.13 E-value=1.3e-10 Score=85.10 Aligned_cols=80 Identities=24% Similarity=0.264 Sum_probs=56.8
Q ss_pred CeeEEEEeCCCCCCcccHhhH-HhhhccccCCCccceEEecCC-CeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEee
Q psy15141 1 MCGIWAIFGHETSNYLTSCEH-NFVKIQHRGPDAWRIEYDNHV-KKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNG 78 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~-~~~~l~hRGpD~~g~~~~~~~-~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NG 78 (95)
||||+..+.++.+.....+.. +...+..||||.++....+.. ..+.+.-..|++.+ ....||++.++ ++++.|||
T Consensus 1 MCGI~~s~~~~~~l~~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG-~~t~Qpvv~d~--~~vfl~NG 77 (520)
T KOG0573|consen 1 MCGIFLSVDKDLALNSELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG-YLTKQPVVEDD--RYVFLFNG 77 (520)
T ss_pred CceEEEeecCCccccccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee-eeccCceeccc--ceEEEecc
Confidence 999999998754422222222 344889999999876654422 23456667888888 35789998764 59999999
Q ss_pred eEcCh
Q psy15141 79 EIYNF 83 (95)
Q Consensus 79 eIyN~ 83 (95)
||||.
T Consensus 78 eIyn~ 82 (520)
T KOG0573|consen 78 EIYNG 82 (520)
T ss_pred eeccC
Confidence 99975
No 42
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.09 E-value=6.4e-10 Score=80.34 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=39.0
Q ss_pred CeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 43 KKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 43 ~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+.++|+|+|++|.+.. ..+|||. +|+|||||-|...++..|.++.
T Consensus 195 s~~~i~H~RysTnt~p~w~~AqPf~-------~laHNGeInt~~~n~~~l~~r~ 241 (361)
T PF00310_consen 195 SHFAIGHQRYSTNTFPSWENAQPFR-------ALAHNGEINTIRGNRNWLEARG 241 (361)
T ss_dssp BSEEEEEEEE-SSSSCSGGGSSSEE-------EEEEEEEETTHHHHHHHHHHHC
T ss_pred ceEEEEEEecCCCCCCcchhcChHH-------HhhhccccccHHHHHHHHHhhc
Confidence 4688999999999865 7899996 7999999999999999998764
No 43
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.46 E-value=3.1e-07 Score=64.13 Aligned_cols=83 Identities=16% Similarity=0.313 Sum_probs=30.6
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhcc------ccCCCccceEEecCC--------------------------CeeEEE
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQ------HRGPDAWRIEYDNHV--------------------------KKTYVG 48 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~------hRGpD~~g~~~~~~~--------------------------~~~~lg 48 (95)
||=++|+-... .. .....+..++ .+=||+.|+....+. ....|+
T Consensus 1 MC~Llg~s~~~-p~---~~~~sl~~~~~~~~~~~~h~DGwGiawy~~~~~~~~k~~~pa~~~~~~~~l~~~~i~S~~~la 76 (271)
T PF13230_consen 1 MCRLLGMSSNR-PT---DINFSLTSFAARGGKTPPHPDGWGIAWYDGGGPRVFKSPRPAWNSPNLRLLADYKIRSRLFLA 76 (271)
T ss_dssp ---------------------------------------EEEEEESSSS-EEEEESS-CCC-HHHHHHHH-H-EEEEEEE
T ss_pred Ccccccccccc-cc---ccccccccccccccCcCCCCCeeEEEEEeCCeEEEEECCCCCcCCchHHHHhhCCccCCEEEE
Confidence 99999997642 11 1111222222 233899988654321 245789
Q ss_pred EEEeeeecCC--CCCCcEEeCC-CCcEEEEEeeeEcChHHHH
Q psy15141 49 FHRLEIVDSL--YGMQPMKLHR-YPRVTLICNGEIYNFKRLG 87 (95)
Q Consensus 49 h~rl~i~~~~--~~~QP~~~~~-~~~~~lv~NGeIyN~~eL~ 87 (95)
|.|.++.+.- .+.|||.... .++++++|||.|++++.++
T Consensus 77 HvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~ 118 (271)
T PF13230_consen 77 HVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDIL 118 (271)
T ss_dssp EE------------SS-EE----ETTEEEEEEEEETTGGGGH
T ss_pred EecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccC
Confidence 9999999853 6889999641 1569999999999988766
No 44
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=98.44 E-value=4e-07 Score=61.13 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=24.8
Q ss_pred CCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 61 MQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 61 ~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
.|++.. ++++++|||||||+.|||++|...
T Consensus 44 ~~~~~~---~~~~iv~NGEIYN~~eLr~~L~~~ 73 (199)
T cd01909 44 VQVARS---ETGTAYLIGELYNRDELRSLLGAG 73 (199)
T ss_pred eeEeeC---CCEEEEEEEEEeCHHHHHHHHHhc
Confidence 466654 569999999999999999999654
No 45
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=98.37 E-value=5.3e-07 Score=66.25 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=38.0
Q ss_pred CeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 43 KKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 43 ~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
+.++|+|+|+||.... ..+|||. +|+|||||+|+..+|..++++
T Consensus 201 s~~al~H~RfSTNT~p~W~~AqPfr-------~laHNGEInT~~gnr~~m~ar 246 (413)
T cd00713 201 SAFALVHSRFSTNTFPSWPLAQPFR-------YLAHNGEINTIRGNRNWMRAR 246 (413)
T ss_pred EEEEEEEEecCCCCCCCcccCCcce-------eEEEcccccCHHHHHHHHHHh
Confidence 4678999999998754 6889995 489999999999999998765
No 46
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=97.98 E-value=1e-05 Score=55.23 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=22.5
Q ss_pred EEeCCCCcEEEEEeeeEcChHHHHHHH
Q psy15141 64 MKLHRYPRVTLICNGEIYNFKRLGVQV 90 (95)
Q Consensus 64 ~~~~~~~~~~lv~NGeIyN~~eL~~~L 90 (95)
+.+.+ ++++++|||||||+.+||++|
T Consensus 66 l~~~~-~~~~~vfnGeIyN~~eLr~~l 91 (224)
T cd01910 66 LFAVK-DDIFCLFQGHLDNLGSLKQQY 91 (224)
T ss_pred EECCC-CCEEEEEEeEEcCHHHHHHHh
Confidence 55555 779999999999999999988
No 47
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=97.94 E-value=3.3e-05 Score=53.64 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=54.7
Q ss_pred CeeEEEEeCCCCCCcccHhh--HHhhhcc---ccCCCccceEEecC-------------------------CCeeEEEEE
Q psy15141 1 MCGIWAIFGHETSNYLTSCE--HNFVKIQ---HRGPDAWRIEYDNH-------------------------VKKTYVGFH 50 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~--~~~~~l~---hRGpD~~g~~~~~~-------------------------~~~~~lgh~ 50 (95)
||=++|+.+.. + ..... ....+.. -.=+|+.|+...+. .+...|+|.
T Consensus 1 MCrlLg~~g~~--p-~~~~~s~~~~~~~~~~~~~h~DGwGia~y~~~~~~~yk~~~P~~~d~~~~~~~~~i~S~~viaHv 77 (252)
T COG0121 1 MCRLLGMHGNP--P-TDSLFSQSGDPRRAGGTGQHGDGWGIAFYEGRGPRLYKSPLPAWEDIALLVLAYPIKSELVIAHV 77 (252)
T ss_pred CceeeeecCCC--c-chhhhhhccchhhccCCCCCCCcceEEEEcCCccEEEeCCCccccchhhhhcccccCccEEEEEE
Confidence 99999998853 1 11111 1111111 12278888865442 135779999
Q ss_pred EeeeecC-C-CCCCcEEeCCC-CcEEEEEeeeEcChHH
Q psy15141 51 RLEIVDS-L-YGMQPMKLHRY-PRVTLICNGEIYNFKR 85 (95)
Q Consensus 51 rl~i~~~-~-~~~QP~~~~~~-~~~~lv~NGeIyN~~e 85 (95)
|.++.+. + .+.+||..... ..+.++|||.|-+++.
T Consensus 78 R~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~ 115 (252)
T COG0121 78 RKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKL 115 (252)
T ss_pred eccCCCcccccCCCCccccCCccceEEEecCcccCccc
Confidence 9999994 2 78899998631 4468999999999987
No 48
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00013 Score=53.10 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=37.5
Q ss_pred CeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 43 KKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 43 ~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+.++|+|+|.||--.. ..+|||.. +||||||-++.-.++.|++++
T Consensus 202 s~~~l~HsRFSTNT~p~W~~AHPfr~-------lvHNGEInT~~gN~nwm~ar~ 248 (371)
T COG0067 202 SAIALVHTRFSTNTFPSWPLAHPFRL-------LVHNGEINTYGGNRNWLEARG 248 (371)
T ss_pred eeEEEEEeccCCCCCCCCCccCccee-------eeecceecccccHHHHHHHhh
Confidence 4678999999987543 68899964 599999999999999988765
No 49
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=97.11 E-value=0.00044 Score=50.43 Aligned_cols=40 Identities=28% Similarity=0.372 Sum_probs=28.8
Q ss_pred CeeEEEEeCCCCCCccc---HhhHHhhhccccC-CCccceEEec
Q psy15141 1 MCGIWAIFGHETSNYLT---SCEHNFVKIQHRG-PDAWRIEYDN 40 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~---~~~~~~~~l~hRG-pD~~g~~~~~ 40 (95)
||||.++.+.++.++.. ..+.++.+|.||| +++.+..-++
T Consensus 12 aCGig~i~~~~g~~sh~iv~~~~~~L~~m~hRG~~~adg~~gdG 55 (371)
T COG0067 12 ACGIGGIAHKDGRPSHKIVEDALEALVNLTHRGAPGADGYAGDG 55 (371)
T ss_pred cCcEEEEEecCCCcchhHHHHHHHHHHhhhccCCCCCCcccccC
Confidence 89999999986543322 3455788999999 8877765443
No 50
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=93.09 E-value=0.11 Score=43.95 Aligned_cols=43 Identities=23% Similarity=0.159 Sum_probs=32.7
Q ss_pred eeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 44 KTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 44 ~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
.++|.|+|+||--.. ..+|||. .|+|||||--..--+..++++
T Consensus 213 ~~al~HsRFSTNT~PsW~~AqPFR-------~laHNGEINTi~gN~nwm~ar 257 (1485)
T PRK11750 213 AICVFHQRFSTNTLPRWPLAQPFR-------YLAHNGEINTITGNRQWARAR 257 (1485)
T ss_pred EEEEEECcCCCCCCCCCCcCCCce-------eeeeccccccHHHHHHHHHHH
Confidence 578999999987543 6789985 479999998776666666544
No 51
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=82.96 E-value=1 Score=29.37 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.2
Q ss_pred CcEEEEEeeeEcChHHHHH
Q psy15141 70 PRVTLICNGEIYNFKRLGV 88 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~ 88 (95)
.++.|||||+|.|.+++.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 4689999999999988754
No 52
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=82.89 E-value=1 Score=29.35 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=16.2
Q ss_pred CcEEEEEeeeEcChHHHHH
Q psy15141 70 PRVTLICNGEIYNFKRLGV 88 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~ 88 (95)
.++.|||||+|.|.+++.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 4689999999999988754
No 53
>KOG0399|consensus
Probab=76.49 E-value=1.1 Score=38.02 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=25.1
Q ss_pred CeeEEEEEEeeeecC-C-CCCCcEEeCCCCcEEEEEeeeEc
Q psy15141 43 KKTYVGFHRLEIVDS-L-YGMQPMKLHRYPRVTLICNGEIY 81 (95)
Q Consensus 43 ~~~~lgh~rl~i~~~-~-~~~QP~~~~~~~~~~lv~NGeIy 81 (95)
.+.+|.|+|.|+--. + .-+||+. ++.|||||-
T Consensus 284 S~~AlvHsRFSTNTfPsWdrAQPmR-------~l~HNGEIN 317 (2142)
T KOG0399|consen 284 SHFALVHSRFSTNTFPSWDRAQPMR-------FLAHNGEIN 317 (2142)
T ss_pred ccceeeeeccccCCCCCccccccch-------hhhccCcee
Confidence 367899999997653 2 6778884 588999995
No 54
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=69.20 E-value=2.2 Score=27.64 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=16.8
Q ss_pred cEEEEEeeeEcChHHHHHHHH
Q psy15141 71 RVTLICNGEIYNFKRLGVQVR 91 (95)
Q Consensus 71 ~~~lv~NGeIyN~~eL~~~L~ 91 (95)
.+-++||||=||.+.+-.++.
T Consensus 95 DLRVCYNGEWy~tr~vs~~ai 115 (155)
T PF10777_consen 95 DLRVCYNGEWYNTRFVSDQAI 115 (155)
T ss_pred EEeEEEcceeeeeccCCHHHH
Confidence 367999999999987766553
No 55
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=68.58 E-value=5.4 Score=29.91 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=20.5
Q ss_pred eeEEEEeCCCCCCccc---HhhHHhhhccccCC
Q psy15141 2 CGIWAIFGHETSNYLT---SCEHNFVKIQHRGP 31 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~---~~~~~~~~l~hRGp 31 (95)
|||-.+.+.++.++.. ..+.++..|.|||-
T Consensus 1 CGvG~va~~~g~~sh~iv~~al~~L~~m~HRGa 33 (413)
T cd00713 1 CGVGFVANIDGKPSHDIVQDALEALERMEHRGG 33 (413)
T ss_pred CeEEEEEECCCCchHHHHHHHHHHHhhCcCCCc
Confidence 9988887765544332 23445779999986
No 56
>PF04641 Rtf2: Rtf2 RING-finger
Probab=67.03 E-value=4.8 Score=28.01 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=27.1
Q ss_pred EEEEEeeeecCCCCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 47 VGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 47 lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
+-||.|+ .|||..+ +|...-|.|||...|-..|..+
T Consensus 34 w~~CaLS-------~~pL~~P----iV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 34 WTHCALS-------QQPLEDP----IVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred cCcccCc-------CCccCCC----eeeCCCCeeEcHHHHHHHHHhc
Confidence 5677765 4777652 5666789999999999988765
No 57
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=61.35 E-value=7.1 Score=19.41 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=11.1
Q ss_pred CcEEEEEeeeEcC
Q psy15141 70 PRVTLICNGEIYN 82 (95)
Q Consensus 70 ~~~~lv~NGeIyN 82 (95)
..+.|.++|++|-
T Consensus 13 ~ev~I~H~g~~Y~ 25 (38)
T PF10636_consen 13 REVRIEHGGQIYR 25 (38)
T ss_dssp SEEEEEETTEEEE
T ss_pred CEEEEEeCCeEEE
Confidence 5689999999994
No 58
>PRK00124 hypothetical protein; Validated
Probab=60.67 E-value=6.2 Score=25.55 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.6
Q ss_pred CcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 70 PRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+-.+|-.+|++|+...+...|..||
T Consensus 86 ga~vl~prG~~yt~~nI~~~L~~R~ 110 (151)
T PRK00124 86 GAIVLNPRGYIYTNDNIDQLLAMRD 110 (151)
T ss_pred CCEEECCCCcCCCHHHHHHHHHHHH
Confidence 6688999999999999999887664
No 59
>TIGR00159 conserved hypothetical protein TIGR00159. These proteins have no detectable global or local homology to any protein of known function. Members are restricted to the bacteria and found broadly in lineages other than the Proteobacteria.
Probab=59.07 E-value=20 Score=24.48 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=21.5
Q ss_pred EeCCCCcEEEEEeeeEcC---hHHHHHHHHh
Q psy15141 65 KLHRYPRVTLICNGEIYN---FKRLGVQVRS 92 (95)
Q Consensus 65 ~~~~~~~~~lv~NGeIyN---~~eL~~~L~~ 92 (95)
+++..+.+.++.||+++. ..+|++.|.+
T Consensus 175 VSEEtG~ISva~~G~l~~~l~~~~L~~~L~~ 205 (211)
T TIGR00159 175 VSEETGSISVAINGVLKRLLSNSDLKEDLEI 205 (211)
T ss_pred EEccCCcEEEEECCEEeecCCHHHHHHHHHH
Confidence 455448899999999975 4888888764
No 60
>PRK06764 hypothetical protein; Provisional
Probab=57.62 E-value=9.3 Score=22.56 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=12.8
Q ss_pred CcEEEEEeeeEcCh
Q psy15141 70 PRVTLICNGEIYNF 83 (95)
Q Consensus 70 ~~~~lv~NGeIyN~ 83 (95)
+.+++-.||-|||-
T Consensus 84 g~yvirvngciy~d 97 (105)
T PRK06764 84 GKYVIRVNGCIYND 97 (105)
T ss_pred ccEEEEEccEEeee
Confidence 88999999999984
No 61
>PRK10183 hypothetical protein; Provisional
Probab=57.14 E-value=8.7 Score=20.73 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=11.3
Q ss_pred CcEEEEEeeeEcC
Q psy15141 70 PRVTLICNGEIYN 82 (95)
Q Consensus 70 ~~~~lv~NGeIyN 82 (95)
+.+.|.+||+.|-
T Consensus 31 ~~v~I~H~G~~Y~ 43 (56)
T PRK10183 31 GKVIIDHDGQEYL 43 (56)
T ss_pred CEEEEEECCcEEE
Confidence 6689999999994
No 62
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.40 E-value=7.9 Score=25.07 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.0
Q ss_pred CcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 70 PRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+-.++--+|++|+...++..|..|+
T Consensus 85 g~~v~~prGr~y~~~nI~~~L~~R~ 109 (150)
T COG1671 85 GAAVLNPRGRLYTEENIGERLAMRD 109 (150)
T ss_pred CCEEECCCCcccCHhHHHHHHHHHH
Confidence 6678888999999999999886653
No 63
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=53.58 E-value=9.9 Score=23.88 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=21.6
Q ss_pred CcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 70 PRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+-.+|-.+|++|+.+.+...|..||
T Consensus 70 ga~vl~~rG~~yt~~nI~~~L~~R~ 94 (130)
T PF02639_consen 70 GAYVLNPRGKEYTKENIDELLAMRH 94 (130)
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHH
Confidence 6688999999999999999887664
No 64
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=52.33 E-value=13 Score=21.22 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=11.2
Q ss_pred CcEEEEEeeeEcC
Q psy15141 70 PRVTLICNGEIYN 82 (95)
Q Consensus 70 ~~~~lv~NGeIyN 82 (95)
+...|++||.+|+
T Consensus 17 GpaYiA~~G~VYD 29 (81)
T COG4892 17 GPAYIAVNGTVYD 29 (81)
T ss_pred CCeEEEECCEEEe
Confidence 6678999999996
No 65
>KOG0898|consensus
Probab=49.09 E-value=9.3 Score=24.47 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=19.1
Q ss_pred CcEEEEEeeeEcChHHHHHHHH
Q psy15141 70 PRVTLICNGEIYNFKRLGVQVR 91 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~~L~ 91 (95)
|.++=||||.-||..|++-|..
T Consensus 98 Gs~VGVyNGK~FnqvEiKPEMI 119 (152)
T KOG0898|consen 98 GSMVGVYNGKTFNQVEIKPEMI 119 (152)
T ss_pred cceEEEecCcccceeeccHHHH
Confidence 5688899999999999998764
No 66
>PF02457 DisA_N: DisA bacterial checkpoint controller nucleotide-binding; InterPro: IPR003390 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, IPR018906 from INTERPRO that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, IPR000445 from INTERPRO the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis.; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 2FB5_A.
Probab=47.27 E-value=20 Score=22.18 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=11.2
Q ss_pred EeCCCCcEEEEEeeeEc
Q psy15141 65 KLHRYPRVTLICNGEIY 81 (95)
Q Consensus 65 ~~~~~~~~~lv~NGeIy 81 (95)
++++.+.+.+..||++|
T Consensus 106 VSEe~G~Is~~~~G~~y 122 (122)
T PF02457_consen 106 VSEETGTISLAYGGKLY 122 (122)
T ss_dssp E-TTTS-EEEEETTEE-
T ss_pred EEccCCcEEEEECCEEC
Confidence 45544889999999998
No 67
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=46.17 E-value=13 Score=20.26 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=13.1
Q ss_pred CcEEEEEeeeEcChHH
Q psy15141 70 PRVTLICNGEIYNFKR 85 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~e 85 (95)
++.+++.+|.|||-.+
T Consensus 14 ~~~~v~i~g~VYDvt~ 29 (76)
T PF00173_consen 14 GDCWVIIDGKVYDVTD 29 (76)
T ss_dssp TEEEEEETTEEEECTT
T ss_pred CCEEEEECCEEccccc
Confidence 6689999999998544
No 68
>COG4256 HemP Hemin uptake protein [Inorganic ion transport and metabolism]
Probab=44.96 E-value=15 Score=20.15 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=12.0
Q ss_pred CcEEEEEeeeEcCh
Q psy15141 70 PRVTLICNGEIYNF 83 (95)
Q Consensus 70 ~~~~lv~NGeIyN~ 83 (95)
+.+.|-+||.+|--
T Consensus 38 ~~i~I~H~Ga~Y~l 51 (63)
T COG4256 38 GKIIIDHDGAEYLL 51 (63)
T ss_pred CeEEEecCCceEEE
Confidence 77999999999954
No 69
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=44.72 E-value=34 Score=17.25 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=16.5
Q ss_pred EEEEEeeeE--cChHHHHHHHHhccC
Q psy15141 72 VTLICNGEI--YNFKRLGVQVRSQNG 95 (95)
Q Consensus 72 ~~lv~NGeI--yN~~eL~~~L~~~~~ 95 (95)
..+.+.|.. .+..+|++.+++.||
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 356667776 777777777766654
No 70
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=38.76 E-value=3.3 Score=25.61 Aligned_cols=8 Identities=50% Similarity=1.107 Sum_probs=6.6
Q ss_pred CeeEEEEe
Q psy15141 1 MCGIWAIF 8 (95)
Q Consensus 1 McGI~g~~ 8 (95)
||||.|-+
T Consensus 83 MCgILgTi 90 (130)
T PF02960_consen 83 MCGILGTI 90 (130)
T ss_pred HHHHHHHH
Confidence 89998865
No 71
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.32 E-value=90 Score=20.08 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=21.0
Q ss_pred hhccccCCCcc-ceEEecCCCeeEEEEEEeeeecCC
Q psy15141 24 VKIQHRGPDAW-RIEYDNHVKKTYVGFHRLEIVDSL 58 (95)
Q Consensus 24 ~~l~hRGpD~~-g~~~~~~~~~~~lgh~rl~i~~~~ 58 (95)
..+..| ||+. .+|.++ +...+||+-|..+|..
T Consensus 114 e~v~~~-pdGe~efyy~D--GdLF~GH~Ilis~D~n 146 (156)
T COG4296 114 ENVMLY-PDGEAEFYYSD--GDLFAGHVILISVDEN 146 (156)
T ss_pred hceEec-cCCcEEEEecC--CCeEeeeEEEEEEcCC
Confidence 344444 6665 445443 5788999999888874
No 72
>COG4815 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.70 E-value=47 Score=21.13 Aligned_cols=34 Identities=9% Similarity=-0.075 Sum_probs=22.5
Q ss_pred EEeeeecCCCCCCcEEeCC--CCcEEEEEeeeEcCh
Q psy15141 50 HRLEIVDSLYGMQPMKLHR--YPRVTLICNGEIYNF 83 (95)
Q Consensus 50 ~rl~i~~~~~~~QP~~~~~--~~~~~lv~NGeIyN~ 83 (95)
+-.+..|.....|||.+++ .+=+++|-|+++...
T Consensus 56 VafW~rde~g~n~Pfs~~~~a~~LlI~V~de~~~G~ 91 (145)
T COG4815 56 VAFWQRDEGGQNQPFSDDGMAAGLLIFVIDEVLRGV 91 (145)
T ss_pred EEEEEeCCCCCcCCCCcccccCeeEEEEEccccceE
Confidence 3346677778899998762 144567778876543
No 73
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=35.68 E-value=31 Score=21.37 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=17.6
Q ss_pred EEEEeeeEcChHHHHHHHHhccC
Q psy15141 73 TLICNGEIYNFKRLGVQVRSQNG 95 (95)
Q Consensus 73 ~lv~NGeIyN~~eL~~~L~~~~~ 95 (95)
.+-|==-|+|.++|++.|+++-|
T Consensus 94 siHFlPiiFd~~~L~~~l~~r~~ 116 (116)
T PF11317_consen 94 SIHFLPIIFDPKQLREQLEERCG 116 (116)
T ss_pred cceeeeeecCHHHHHHHHHHhCc
Confidence 35555678889999999998754
No 74
>PF01589 Alpha_E1_glycop: Alphavirus E1 glycoprotein; InterPro: IPR002548 Alphaviruses are enveloped RNA viruses that use arthropods such as mosquitoes for transmission to their vertebrate hosts, and include Semliki Forest and Sindbis viruses []. Alphaviruses consist of three structural proteins: the core nucleocapsid protein C, and the envelope proteins P62 and E1 that associate as a heterodimer. The viral membrane-anchored surface glycoproteins are responsible for receptor recognition and entry into target cells through membrane fusion. The proteolytic maturation of P62 into E2 (IPR000936 from INTERPRO) and E3 (IPR002533 from INTERPRO) causes a change in the viral surface. Together the E1, E2, and sometimes E3, glycoprotein "spikes" form an E1/E2 dimer or an E1/E2/E3 trimer, where E2 extends from the centre to the vertices, E1 fills the space between the vertices, and E3, if present, is at the distal end of the spike []. Upon exposure of the virus to the acidity of the endosome, E1 dissociates from E2 to form an E1 homotrimer, which is necessary for the fusion step to drive the cellular and viral membranes together. The alphaviral glycoprotein E1 is a class II viral fusion protein, which is structurally different from the class I fusion proteins found in influenza virus and HIV. The structure of the Semliki Forest virus revealed a structure that is similar to that of flaviviral glycoprotein E, with three structural domains in the same primary sequence arrangement []. This entry represents all three domains of the alphaviral E1 glycoprotein.; GO: 0004252 serine-type endopeptidase activity, 0019028 viral capsid, 0055036 virion membrane; PDB: 2YEW_L 1LD4_P 1Z8Y_K 3MUU_B 3N44_F 2XFB_F 3N42_F 2XFC_H 3N40_F 3N41_F ....
Probab=33.29 E-value=25 Score=26.86 Aligned_cols=14 Identities=29% Similarity=0.802 Sum_probs=10.7
Q ss_pred cEEEEEeeeEcChH
Q psy15141 71 RVTLICNGEIYNFK 84 (95)
Q Consensus 71 ~~~lv~NGeIyN~~ 84 (95)
+-++++-||+||+.
T Consensus 239 ~KiVvy~~eVYNyD 252 (502)
T PF01589_consen 239 NKIVVYKGEVYNYD 252 (502)
T ss_dssp SEEEEESSEEEE--
T ss_pred ceEEEEcceeeccc
Confidence 46899999999985
No 75
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=33.08 E-value=40 Score=16.41 Aligned_cols=14 Identities=21% Similarity=0.608 Sum_probs=9.0
Q ss_pred CcEEEEEeeeEcCh
Q psy15141 70 PRVTLICNGEIYNF 83 (95)
Q Consensus 70 ~~~~lv~NGeIyN~ 83 (95)
..+.|.|||+++=+
T Consensus 6 ~qLTIfY~G~V~Vf 19 (36)
T PF06200_consen 6 AQLTIFYGGQVCVF 19 (36)
T ss_pred CcEEEEECCEEEEe
Confidence 34677777776533
No 76
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.
Probab=32.36 E-value=56 Score=16.62 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=11.9
Q ss_pred CcEEEEEeeeEcChH
Q psy15141 70 PRVTLICNGEIYNFK 84 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~ 84 (95)
++..|+++|-.|...
T Consensus 7 g~~~L~~~Gy~y~~~ 21 (62)
T PF04500_consen 7 GRPKLVYDGYRYYFN 21 (62)
T ss_dssp TEEEEEETTEEEEEE
T ss_pred CCEEEEECCeEEECc
Confidence 677899999988653
No 77
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=31.98 E-value=46 Score=17.55 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=11.6
Q ss_pred CcEEeCCCCcEEEEEeeeEcCh
Q psy15141 62 QPMKLHRYPRVTLICNGEIYNF 83 (95)
Q Consensus 62 QP~~~~~~~~~~lv~NGeIyN~ 83 (95)
+.+..+.++++.|. |+||+-
T Consensus 34 ~i~Y~~~dg~yli~--G~l~d~ 53 (57)
T PF10411_consen 34 GILYVDEDGRYLIQ--GQLYDL 53 (57)
T ss_dssp EEEEEETTSSEEEE--S-EEE-
T ss_pred eEEEEcCCCCEEEE--eEEEec
Confidence 45544433888776 999964
No 78
>PF07484 Collar: Phage Tail Collar Domain; InterPro: IPR011083 This entry is represented by a domain found in Bacteriophage T4, Gp12. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This region is occasionally found in conjunction with IPR005003 from INTERPRO. Most of the proteins appear to be phage tail proteins; however some appear to be involved in other processes. For instance the RhiB protein (Q03314 from SWISSPROT) from Rhizobium leguminosarum may be involved in plant-microbe interactions []. A related protein, microcystin related protein (MrpB, Q9L3N1 from SWISSPROT) is involved in the pathogenicity of Microcystis aeruginosa. The finding of this family in a structural component of the phage tail fibre baseplate (P10930 from SWISSPROT) suggests that its function is structural rather than enzymatic. Structural studies show this region consists of a helix and a loop [] and three beta-strands. This alignment does not catch the third strand as it is separated from the rest of the structure by around 100 residues. This strand is conserved in homologues but the intervening sequence is not. Much of the function of P10930 from SWISSPROT appears to reside in this intervening region. In the tertiary structure of the phage baseplate this domain forms part of the collar and may bind SO4. The long unconserved region maybe due to domain swapping in and out of a loop or due to rapid evolution.; PDB: 1OCY_A 2XGF_C 1H6W_A.
Probab=31.41 E-value=27 Score=18.64 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=10.9
Q ss_pred EEEEeeeEcC---hHHHHHHHH
Q psy15141 73 TLICNGEIYN---FKRLGVQVR 91 (95)
Q Consensus 73 ~lv~NGeIyN---~~eL~~~L~ 91 (95)
++.+||..+| |.+|.+.|-
T Consensus 15 wl~cdG~~~~~~~Yp~L~~~iG 36 (57)
T PF07484_consen 15 WLLCDGQSLSIAQYPALFALIG 36 (57)
T ss_dssp EEESBS-B--TTT-HHHHHHCT
T ss_pred hhhcCCCcCChhHhHHHHHHhC
Confidence 7889999998 566666543
No 79
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=30.32 E-value=54 Score=20.80 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=13.3
Q ss_pred EEEEeeeEcChHHHHHHHHhcc
Q psy15141 73 TLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 73 ~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+|.|| ++|..++.++|.++|
T Consensus 114 illWN--vf~~~~~AR~ii~~~ 133 (133)
T PF14721_consen 114 ILLWN--VFNRMPIARKIIAEN 133 (133)
T ss_dssp EEEES----S-HHHHHHHHHH-
T ss_pred EEEee--ccCccHHHHHHhhcC
Confidence 47788 999999999988765
No 80
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=30.25 E-value=33 Score=19.75 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=20.8
Q ss_pred EEEEEeeeecCCCCCCcEEeCCCCcEEEEEeeeEcC
Q psy15141 47 VGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEIYN 82 (95)
Q Consensus 47 lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGeIyN 82 (95)
.|--||+..++....|++.+.+ .|++-|-.+|
T Consensus 37 ~g~qrLsfQepgg~rqlL~s~~----sLA~yGiFs~ 68 (80)
T cd01811 37 SGLQRLSFQEPGGERQLLSSRK----SLADYGIFSK 68 (80)
T ss_pred ccceEEEeecCCcccccccccc----cHhhhcceec
Confidence 3567899888877777777642 4555454443
No 81
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=30.04 E-value=87 Score=21.70 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.1
Q ss_pred cEEeCCCCcEEE-EEeeeEcChHHHHHHHHh
Q psy15141 63 PMKLHRYPRVTL-ICNGEIYNFKRLGVQVRS 92 (95)
Q Consensus 63 P~~~~~~~~~~l-v~NGeIyN~~eL~~~L~~ 92 (95)
|+..++ +++++ ++++.|.|..+|-++|..
T Consensus 167 pviTDn-GN~IlDv~~~~i~dp~~le~~l~~ 196 (227)
T COG0120 167 PVITDN-GNYILDVHFGRIEDPEELEKELNA 196 (227)
T ss_pred CEEeeC-CCEEEEecCCCcCCHHHHHHHHhC
Confidence 888876 77766 478999999999998864
No 82
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=29.94 E-value=35 Score=16.43 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=8.2
Q ss_pred EEEEEeeeEcC
Q psy15141 72 VTLICNGEIYN 82 (95)
Q Consensus 72 ~~lv~NGeIyN 82 (95)
-.+.|||.+|-
T Consensus 14 d~V~~~g~~y~ 24 (41)
T PF02839_consen 14 DRVSYNGKLYQ 24 (41)
T ss_dssp -EEEETTEEEE
T ss_pred CEEEECCCEEE
Confidence 46889999983
No 83
>KOG0537|consensus
Probab=29.25 E-value=44 Score=20.79 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=13.2
Q ss_pred CcEEEEEeeeEcChHHH
Q psy15141 70 PRVTLICNGEIYNFKRL 86 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL 86 (95)
...+|+.+|.+||--..
T Consensus 19 ~d~Wvii~gkVYDvT~F 35 (124)
T KOG0537|consen 19 DDCWVIIHGKVYDVTSF 35 (124)
T ss_pred CCeEEEECCEEEeccch
Confidence 45899999999986443
No 84
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=29.17 E-value=85 Score=21.14 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=24.5
Q ss_pred CCcEEeCCCCcEEEE-EeeeEcChHHHHHHHHhcc
Q psy15141 61 MQPMKLHRYPRVTLI-CNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 61 ~QP~~~~~~~~~~lv-~NGeIyN~~eL~~~L~~~~ 94 (95)
.+|++.++ ++++|= +-+++.|..+|.++|..-.
T Consensus 161 ~~p~~Td~-gn~i~D~~~~~~~~~~~l~~~l~~i~ 194 (213)
T cd01398 161 GGPVVTDN-GNYILDVHFGTIEDPEALEKELKSIP 194 (213)
T ss_pred CCcEECCC-CCEEEEecCCCCCCHHHHHHHHhcCC
Confidence 57998876 776653 4567889999999987543
No 85
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.65 E-value=94 Score=18.55 Aligned_cols=26 Identities=8% Similarity=0.300 Sum_probs=21.8
Q ss_pred CcEEEEEeeeEcChHHHHHHHHhccC
Q psy15141 70 PRVTLICNGEIYNFKRLGVQVRSQNG 95 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~~L~~~~~ 95 (95)
.++.++--|.=.||.+|++.|++-+|
T Consensus 49 ~~~~itIeG~~ldydei~~~iE~~Gg 74 (97)
T COG1888 49 ENLKITIEGTNLDYDEIEEVIEELGG 74 (97)
T ss_pred cceEEEEEcCCCCHHHHHHHHHHcCC
Confidence 44778888999999999999988765
No 86
>PHA02104 hypothetical protein
Probab=28.51 E-value=22 Score=20.25 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=9.5
Q ss_pred EEEEEeeeEcCh
Q psy15141 72 VTLICNGEIYNF 83 (95)
Q Consensus 72 ~~lv~NGeIyN~ 83 (95)
-.+++||.|||.
T Consensus 52 ~yfa~~gkiyna 63 (89)
T PHA02104 52 TYFAQNGKIYNA 63 (89)
T ss_pred eeehhCCeEEee
Confidence 468889999984
No 87
>PF04239 DUF421: Protein of unknown function (DUF421); InterPro: IPR007353 This family of uncharacterised proteins is known as YDFR family; PDB: 3C6F_D.
Probab=26.90 E-value=99 Score=18.21 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=8.1
Q ss_pred CcEEEEEeeeEc
Q psy15141 70 PRVTLICNGEIY 81 (95)
Q Consensus 70 ~~~~lv~NGeIy 81 (95)
...+|+.||+|.
T Consensus 7 ~p~~Li~dG~i~ 18 (99)
T PF04239_consen 7 KPTVLIRDGKID 18 (99)
T ss_dssp --EEEEETTEE-
T ss_pred CcEEEEECCEEC
Confidence 347899999975
No 88
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=25.45 E-value=58 Score=17.49 Aligned_cols=21 Identities=0% Similarity=0.056 Sum_probs=16.4
Q ss_pred CcEEEEEeeeEcChHHHHHHH
Q psy15141 70 PRVTLICNGEIYNFKRLGVQV 90 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~~L 90 (95)
..+++..|++|....+....|
T Consensus 30 ~~vav~~N~~iv~r~~~~~~L 50 (65)
T PRK05863 30 KGIAVAVDWSVLPRSDWATKL 50 (65)
T ss_pred CcEEEEECCcCcChhHhhhhc
Confidence 568899999998888776654
No 89
>PF12574 120_Rick_ant: 120 KDa Rickettsia surface antigen; InterPro: IPR020954 This domain family is found in bacteria, and is approximately 40 amino acids in length. This family is a Rickettsia surface antigen of 120 kDa which may be used as an antigen for immune response against the bacterial species [].
Probab=25.21 E-value=1.3e+02 Score=21.09 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=19.8
Q ss_pred CCCcEEe--CCC-CcEEEEEeeeEcC-------hHHHHHHHHh
Q psy15141 60 GMQPMKL--HRY-PRVTLICNGEIYN-------FKRLGVQVRS 92 (95)
Q Consensus 60 ~~QP~~~--~~~-~~~~lv~NGeIyN-------~~eL~~~L~~ 92 (95)
-+||+.. ++. ---.++|.||||- |.+|-++...
T Consensus 189 ~PqPi~F~~~~p~~pAyi~~~geiytLPVtsGkY~~lmkeV~~ 231 (255)
T PF12574_consen 189 SPQPIKFFGDNPWYPAYIEHGGEIYTLPVTSGKYKYLMKEVAE 231 (255)
T ss_pred CCCCeEeccCCCCCeeEEEECCEEEEEecchhHHHHHHHHHHH
Confidence 4699844 321 2235889999993 4555555443
No 90
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=25.03 E-value=95 Score=18.58 Aligned_cols=26 Identities=12% Similarity=0.351 Sum_probs=20.3
Q ss_pred CcEEEEEeeeEcChHHHHHHHHhccC
Q psy15141 70 PRVTLICNGEIYNFKRLGVQVRSQNG 95 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~~L~~~~~ 95 (95)
.++-++.-|+=.||.++++.++..||
T Consensus 47 e~lkitiEG~~id~d~i~~~Ie~~Gg 72 (95)
T PF02680_consen 47 ENLKITIEGDDIDFDEIKEAIEELGG 72 (95)
T ss_dssp EEEEEEEEESSE-HHHHHHHHHHTT-
T ss_pred cEEEEEEEeCCCCHHHHHHHHHHcCC
Confidence 34778888999999999999988775
No 91
>PF05521 Phage_H_T_join: Phage head-tail joining protein ; InterPro: IPR008767 This entry describes the head-tail adaptor protein of bacteriophage SPP1 and related proteins in other bacteriophage and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg7 (RCAP_rcc01689) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2KCA_A 2KZ4_A.
Probab=24.59 E-value=54 Score=18.09 Aligned_cols=16 Identities=31% Similarity=0.783 Sum_probs=11.8
Q ss_pred CcEEEEEeeeEcChHH
Q psy15141 70 PRVTLICNGEIYNFKR 85 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~e 85 (95)
....|+|+|++||-..
T Consensus 65 ~~~ri~~~g~~y~I~~ 80 (95)
T PF05521_consen 65 PDMRIKYDGKVYNIKS 80 (95)
T ss_dssp TTEEEEECTEEEEE-S
T ss_pred cceEEEECCEEEEEEE
Confidence 3466889999998654
No 92
>PF05720 Dicty_CAD: Cell-cell adhesion domain; InterPro: IPR008601 This family is based on a group of Dictyostelium discoideum (Slime mould) proteins that are essential in early development []. P16642 from SWISSPROT and P16643 from SWISSPROT are located on the cell surface and mediate cell-cell adhesion.; GO: 0007155 cell adhesion
Probab=24.54 E-value=1.6e+02 Score=17.18 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=10.3
Q ss_pred EEEEEeeeEcChH
Q psy15141 72 VTLICNGEIYNFK 84 (95)
Q Consensus 72 ~~lv~NGeIyN~~ 84 (95)
-.|.+||+.|+-.
T Consensus 51 ~kiE~~Gq~ydiP 63 (82)
T PF05720_consen 51 GKIERNGQEYDIP 63 (82)
T ss_pred eeEEECCEEeeCC
Confidence 4689999999753
No 93
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=23.38 E-value=1.3e+02 Score=20.98 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=11.6
Q ss_pred cChHHHHHHHHhc
Q psy15141 81 YNFKRLGVQVRSQ 93 (95)
Q Consensus 81 yN~~eL~~~L~~~ 93 (95)
|+-.|||+.|++.
T Consensus 224 y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 224 YSPEELREWLEKY 236 (237)
T ss_pred CCHHHHHHHHHhc
Confidence 8999999999875
No 94
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=23.20 E-value=55 Score=16.68 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=5.8
Q ss_pred EEEEEeeeEc
Q psy15141 72 VTLICNGEIY 81 (95)
Q Consensus 72 ~~lv~NGeIy 81 (95)
++|..||+||
T Consensus 8 ~~I~~dG~v~ 17 (64)
T PF13186_consen 8 LYIDPDGDVY 17 (64)
T ss_pred EEEeeCccEE
Confidence 4555666655
No 95
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.90 E-value=98 Score=15.87 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=20.1
Q ss_pred CcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 70 PRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+.+.|.++....+..+|.+.+++.|
T Consensus 36 ~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 36 KTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp TEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEEEEEecCCCCHHHHHHHHHHhC
Confidence 6788889988888888888887643
No 96
>cd00036 ChtBD3 Chitin/cellulose binding domain. Putative carbohydrate binding domain found in many different glycosyl hydrolase enzymes. May occur in tandem arrangements.
Probab=21.71 E-value=65 Score=15.39 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=8.5
Q ss_pred EEEEEeeeEcC
Q psy15141 72 VTLICNGEIYN 82 (95)
Q Consensus 72 ~~lv~NGeIyN 82 (95)
-.+.|||.+|.
T Consensus 12 d~V~~~g~~y~ 22 (41)
T cd00036 12 DLVSYNGKVYK 22 (41)
T ss_pred CEEEECCeEEE
Confidence 46789999885
No 97
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=21.62 E-value=1.4e+02 Score=19.37 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=20.7
Q ss_pred CcEEEEEeeeEcCh------HHHHHHHHhcc
Q psy15141 70 PRVTLICNGEIYNF------KRLGVQVRSQN 94 (95)
Q Consensus 70 ~~~~lv~NGeIyN~------~eL~~~L~~~~ 94 (95)
+++++.++..+|+. ..|+..|.+++
T Consensus 150 GG~~i~ig~~~~D~Sik~~L~~l~~~l~~~~ 180 (180)
T PRK13441 150 AGAVVEFEGKRLDVTVQGRLKKIAREVLKRG 180 (180)
T ss_pred CcEEEEECCEEEeHhHHHHHHHHHHHHhhCC
Confidence 67999999999998 78888886654
No 98
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=21.58 E-value=2.5e+02 Score=19.64 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=29.9
Q ss_pred CccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEeeeEcCh-------HHHHHHHHhccC
Q psy15141 32 DAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEIYNF-------KRLGVQVRSQNG 95 (95)
Q Consensus 32 D~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGeIyN~-------~eL~~~L~~~~~ 95 (95)
|.+.+|+.- -||-+-.-++=++...||+.-.- ..--+|-+|-++|| +.|++.|+++-|
T Consensus 26 d~sk~~vGV-----DLGT~~iV~~vlD~d~~Pvag~~-~~advVRDGiVvdf~eaveiVrrlkd~lEk~lG 90 (277)
T COG4820 26 DESKLWVGV-----DLGTCDIVSMVLDRDGQPVAGCL-DWADVVRDGIVVDFFEAVEIVRRLKDTLEKQLG 90 (277)
T ss_pred ccCceEEEe-----ecccceEEEEEEcCCCCeEEEEe-hhhhhhccceEEehhhHHHHHHHHHHHHHHhhC
Confidence 666777643 34443222222334679976431 11124557777776 445666665543
No 99
>PRK13033 formyl peptide receptor-like 1 inhibitory protein; Reviewed
Probab=21.21 E-value=34 Score=20.94 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=15.9
Q ss_pred CCcEEeCCCCcEEEEEeeeEcC
Q psy15141 61 MQPMKLHRYPRVTLICNGEIYN 82 (95)
Q Consensus 61 ~QP~~~~~~~~~~lv~NGeIyN 82 (95)
..|+.... .++-+|-||||..
T Consensus 109 trplee~r-kni~vv~~geids 129 (133)
T PRK13033 109 TRPLEENR-KNIKVVKNGEIDS 129 (133)
T ss_pred cCchHHhc-cCCceeecCccce
Confidence 36877655 6788999999863
No 100
>PHA02123 hypothetical protein
Probab=20.89 E-value=1.6e+02 Score=18.19 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=21.4
Q ss_pred EEeeeecCCCCCCcEEeCCCCcEEEEEeeeEcChH
Q psy15141 50 HRLEIVDSLYGMQPMKLHRYPRVTLICNGEIYNFK 84 (95)
Q Consensus 50 ~rl~i~~~~~~~QP~~~~~~~~~~lv~NGeIyN~~ 84 (95)
+-++++|......-+.... .++.|.+||-+-|-.
T Consensus 75 sdyw~id~ar~d~~il~~s-ervmis~~givqnv~ 108 (146)
T PHA02123 75 SDYWLIDGARDDKNILVGT-ERVMISLNGIVQNVD 108 (146)
T ss_pred CceEEEecccCCCceeecc-eEEEEEecceEeeeE
Confidence 4566776542223344444 679999999887743
No 101
>PF13926 DUF4211: Domain of unknown function (DUF4211)
Probab=20.87 E-value=56 Score=20.72 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.9
Q ss_pred cEEEEEeeeEcChHHHH
Q psy15141 71 RVTLICNGEIYNFKRLG 87 (95)
Q Consensus 71 ~~~lv~NGeIyN~~eL~ 87 (95)
.+.+.++|+-||...|.
T Consensus 130 ~~~i~l~G~~Yn~~tL~ 146 (153)
T PF13926_consen 130 TFRIRLSGKPYNKKTLE 146 (153)
T ss_pred eEEEEeCCCCCCHHHCC
Confidence 58899999999998875
No 102
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=20.70 E-value=1e+02 Score=18.97 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=12.1
Q ss_pred CCCcEEeCCCCcEEEEEeeeE
Q psy15141 60 GMQPMKLHRYPRVTLICNGEI 80 (95)
Q Consensus 60 ~~QP~~~~~~~~~~lv~NGeI 80 (95)
-+||+.-.. +++ .+|||.|
T Consensus 61 i~QPi~iN~-gg~-~~y~gq~ 79 (114)
T PF09008_consen 61 IAQPIIINK-GGF-PVYNGQI 79 (114)
T ss_dssp E-SSEEE-T-TS--EEETTEE
T ss_pred ccCCEEEcc-CCc-eEEccce
Confidence 459998765 554 7888875
No 103
>PF03621 MbtH: MbtH-like protein; InterPro: IPR005153 This domain is found in the MbtH protein O05821 from SWISSPROT as well as at the N terminus of the antibiotic synthesis protein NIKP1. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. Many of the members of this family are found in known antibiotic synthesis gene clusters.; PDB: 2PST_X 2GPF_A 2LPD_A 2KHR_A.
Probab=20.49 E-value=60 Score=17.22 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=8.5
Q ss_pred CcEEeCCCCcEEEEEeee
Q psy15141 62 QPMKLHRYPRVTLICNGE 79 (95)
Q Consensus 62 QP~~~~~~~~~~lv~NGe 79 (95)
.||.+++ +.+.++.|.|
T Consensus 4 npfd~~~-~~f~VlvN~e 20 (54)
T PF03621_consen 4 NPFDDED-GTFLVLVNDE 20 (54)
T ss_dssp SS-S----S-EEEEEETT
T ss_pred CCCCCCC-CeEEEEEcCC
Confidence 5777666 7777777764
No 104
>COG4699 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.32 E-value=16 Score=22.59 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=20.2
Q ss_pred cEEEEEeeeEcChHHHHHHHHhccC
Q psy15141 71 RVTLICNGEIYNFKRLGVQVRSQNG 95 (95)
Q Consensus 71 ~~~lv~NGeIyN~~eL~~~L~~~~~ 95 (95)
.++|..|+++|--..++.+.+.+++
T Consensus 85 sliLl~n~ev~p~~~~~~~~~~kns 109 (120)
T COG4699 85 SLILLQNNEVYPKEKIISEYEKKNS 109 (120)
T ss_pred HHhhhccCcccCCccccchhhhhcc
Confidence 3788999999988888888877653
No 105
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=20.20 E-value=70 Score=19.28 Aligned_cols=10 Identities=40% Similarity=0.797 Sum_probs=7.9
Q ss_pred EEEEeeeEcC
Q psy15141 73 TLICNGEIYN 82 (95)
Q Consensus 73 ~lv~NGeIyN 82 (95)
+...||+|||
T Consensus 30 ie~~dGti~~ 39 (102)
T PF03197_consen 30 IEMADGTIYN 39 (102)
T ss_pred EEecCCcEEc
Confidence 4667999998
Done!