Query psy15141
Match_columns 95
No_of_seqs 158 out of 1217
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 21:40:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 99.9 7.3E-26 2.5E-30 168.4 9.2 88 2-93 1-90 (553)
2 1xff_A D-fructose-6-, glucosam 99.9 9E-25 3.1E-29 148.1 10.8 88 2-94 1-115 (240)
3 1ao0_A Glutamine phosphoribosy 99.9 2E-23 6.8E-28 152.5 10.5 90 2-94 1-119 (459)
4 1ecf_A Glutamine phosphoribosy 99.9 2.6E-23 9E-28 153.3 11.2 90 2-93 1-117 (504)
5 2bpl_A Glucosamine--fructose-6 99.9 1.9E-22 6.3E-27 151.3 9.7 88 2-94 1-115 (608)
6 3mdn_A Glutamine aminotransfer 99.7 7.4E-17 2.5E-21 111.3 6.1 89 1-94 3-131 (274)
7 1te5_A Conserved hypothetical 99.6 2.4E-17 8.1E-22 112.8 1.1 82 1-88 1-118 (257)
8 1q15_A CARA; CMPR, (2S,5S)-5-c 98.7 2.8E-09 9.6E-14 78.6 2.4 44 44-91 27-73 (503)
9 1jgt_A Beta-lactam synthetase; 98.7 9.1E-09 3.1E-13 76.1 3.0 47 27-90 40-89 (513)
10 1ea0_A Glutamate synthase [NAD 98.3 3.3E-07 1.1E-11 74.4 3.5 44 43-93 202-247 (1479)
11 1ofd_A Ferredoxin-dependent gl 98.2 2.1E-06 7.1E-11 70.0 5.3 66 20-92 149-242 (1520)
12 1ofd_A Ferredoxin-dependent gl 75.2 3.5 0.00012 34.5 4.4 37 2-38 1-48 (1520)
13 1ea0_A Glutamate synthase [NAD 67.3 4.7 0.00016 33.7 3.5 36 2-37 1-47 (1479)
14 2loj_A Putative cytoplasmic pr 59.9 4.6 0.00016 21.5 1.6 13 70-82 38-50 (63)
15 2jra_A Protein RPA2121; domain 55.8 5.7 0.0002 21.4 1.5 13 70-82 42-54 (67)
16 2pjm_A Ribose-5-phosphate isom 48.7 21 0.00073 23.5 3.7 33 60-93 166-198 (226)
17 4gmk_A Ribose-5-phosphate isom 42.8 17 0.00059 24.1 2.6 32 61-93 166-198 (228)
18 2ebu_A Replication factor C su 40.3 20 0.00069 21.0 2.4 25 71-95 25-51 (112)
19 2k6g_A Replication factor C su 37.9 26 0.00091 20.3 2.6 24 72-95 36-61 (109)
20 3ixq_A Ribose-5-phosphate isom 36.3 43 0.0015 22.1 3.7 34 59-93 165-198 (226)
21 2ibj_A Cytochrome B5, CYTB5; F 36.0 14 0.00049 20.4 1.2 16 70-85 21-36 (88)
22 3bpd_A Uncharacterized protein 35.9 58 0.002 18.8 3.7 26 70-95 49-74 (100)
23 1x3x_A Cytochrome B5; hemoprot 34.8 15 0.00053 20.0 1.2 16 70-85 18-33 (82)
24 1cyo_A Cytochrome B5; electron 34.2 16 0.00054 20.5 1.2 16 70-85 19-34 (93)
25 1cxy_A Cytochrome B5; helix, b 33.7 16 0.00056 20.3 1.2 16 70-85 22-37 (90)
26 3me7_A Putative uncharacterize 33.6 45 0.0015 19.9 3.3 29 64-93 132-160 (170)
27 1i9w_A Fusion protein E1; enve 33.4 15 0.00051 26.0 1.1 14 71-84 175-188 (390)
28 3j0f_E E1 envelope glycoprotei 33.3 16 0.00053 26.4 1.2 14 71-84 175-188 (439)
29 3id1_A Regulator of sigma E pr 33.3 45 0.0015 18.2 3.0 23 70-92 23-46 (95)
30 3ner_A Cytochrome B5 type B; h 32.9 17 0.00059 20.4 1.2 16 70-85 24-39 (92)
31 3lf5_A Cytochrome B5 reductase 32.8 17 0.00059 20.2 1.2 17 70-86 20-36 (88)
32 1zrj_A E1B-55KDA-associated pr 32.0 23 0.0008 17.8 1.5 12 83-94 15-26 (50)
33 3j0c_A E1 envelope glycoprotei 30.0 22 0.00074 25.7 1.5 14 71-84 175-188 (442)
34 3n40_F E1 envelope glycoprotei 29.4 19 0.00065 25.5 1.1 14 71-84 177-190 (393)
35 1hko_A Cytochrome B5; electron 29.0 18 0.00061 20.8 0.8 17 70-86 23-39 (104)
36 4eo1_A Attachment protein G3P; 27.9 37 0.0013 18.2 1.8 18 64-82 24-41 (70)
37 3n44_F E1 envelope glycoprotei 27.7 21 0.00072 25.8 1.1 14 71-84 197-210 (473)
38 2raq_A Conserved protein MTH88 27.4 57 0.0019 18.8 2.7 26 70-95 49-74 (97)
39 1h1j_S THO1 protein; SAP domai 27.3 31 0.0011 17.3 1.5 11 84-94 11-21 (51)
40 1mj4_A Sulfite oxidase; cytoch 26.5 29 0.00098 18.9 1.3 15 71-85 21-35 (82)
41 1lk5_A D-ribose-5-phosphate is 26.1 71 0.0024 20.9 3.4 33 60-93 167-200 (229)
42 2x3d_A SSO6206; unknown functi 25.9 68 0.0023 18.4 2.9 25 71-95 49-73 (96)
43 2cok_A Poly [ADP-ribose] polym 24.5 54 0.0019 19.1 2.4 24 72-95 14-38 (113)
44 3uw1_A Ribose-5-phosphate isom 23.4 79 0.0027 21.0 3.3 31 62-93 175-206 (239)
45 2kvu_A MKL/myocardin-like prot 22.9 40 0.0014 18.4 1.5 12 83-94 31-42 (75)
46 2jrb_A ORF 1 protein; RNA bind 22.2 83 0.0029 17.7 2.7 26 59-85 37-62 (88)
47 1abz_A Alpha-T-alpha, ATA; de 22.2 38 0.0013 15.7 1.1 14 21-34 10-23 (40)
48 4id3_A DNA repair protein REV1 20.9 73 0.0025 16.8 2.4 25 71-95 10-35 (92)
49 3hhe_A Ribose-5-phosphate isom 20.5 78 0.0027 21.3 2.8 32 61-93 190-222 (255)
50 2keo_A Probable E3 ubiquitin-p 20.5 53 0.0018 19.1 1.8 19 70-88 38-56 (112)
51 2lpd_A Uncharacterized protein 20.3 37 0.0013 19.5 1.0 20 59-79 15-34 (95)
52 2dsm_A Hypothetical protein YQ 20.2 84 0.0029 17.0 2.4 25 71-95 33-57 (72)
53 4e1p_A Protein LSR2; anti-para 20.1 81 0.0028 16.5 2.3 22 70-91 21-49 (61)
54 2rpr_A Flywch-type zinc finger 20.0 63 0.0021 17.5 1.9 14 70-83 19-32 (87)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=99.93 E-value=7.3e-26 Score=168.45 Aligned_cols=88 Identities=28% Similarity=0.394 Sum_probs=73.6
Q ss_pred eeEEEEeCCCCCCc--ccHhhHHhhhccccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEeee
Q psy15141 2 CGIWAIFGHETSNY--LTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGE 79 (95)
Q Consensus 2 cGI~g~~~~~~~~~--~~~~~~~~~~l~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGe 79 (95)
|||+|+++.+.... ......|+.+|+|||||++|++..+ +++|||+||+|+|++.+.||+.+.+ ++++|+||||
T Consensus 1 CGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~G~~~~~---~~~lgh~Rlsi~~~~~~~QP~~~~~-~~~~lv~NGe 76 (553)
T 1ct9_A 1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASD---NAILAHERLSIVDVNAGAQPLYNQQ-KTHVLAVNGE 76 (553)
T ss_dssp CEEEEEESCCSCHHHHHHHHHHHHHTTGGGCBTEEEEEECS---SEEEEEEECCCSCTTTCCSSEECTT-SCEEEEEEEE
T ss_pred CEEEEEEcCCCcchhHHHHHHHHHHHHhccCCCcccEEEEC---CEEEEEEeeeeeCCCCCCCCeEeCC-CCEEEEEEEE
Confidence 99999998642211 1223456789999999999999875 6899999999999878899999877 8899999999
Q ss_pred EcChHHHHHHHHhc
Q psy15141 80 IYNFKRLGVQVRSQ 93 (95)
Q Consensus 80 IyN~~eL~~~L~~~ 93 (95)
|||+.+||++|+++
T Consensus 77 IyN~~eLr~~L~~~ 90 (553)
T 1ct9_A 77 IYNHQALRAEYGDR 90 (553)
T ss_dssp ETTHHHHHHHHTTT
T ss_pred EECHHHHHHHHhcc
Confidence 99999999999653
No 2
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=99.92 E-value=9e-25 Score=148.09 Aligned_cols=88 Identities=17% Similarity=0.247 Sum_probs=71.9
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceE-EecC------------------------CCeeEEEEEEeeeec
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIE-YDNH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~-~~~~------------------------~~~~~lgh~rl~i~~ 56 (95)
|||+|+++.+ + .......++.+|+|||||+.|++ ...+ .+.++|||+||+|.+
T Consensus 1 CGI~G~~~~~-~-~~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~g 78 (240)
T 1xff_A 1 CGIVGAIAQR-D-VAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHG 78 (240)
T ss_dssp CEEEEEECSS-C-CHHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEEEEECCSSS
T ss_pred CcEEEEEcCc-c-hHHHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccEEEEEEeccCCC
Confidence 9999999863 2 23345567889999999999998 6421 246899999999998
Q ss_pred C--CCCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 S--LYGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~--~~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
. ..+.|||.+ ++++|+|||||||+.+||++|++++
T Consensus 79 ~~~~~n~qP~~~---~~~~l~hNG~I~N~~~lr~~L~~~g 115 (240)
T 1xff_A 79 EPSEVNAHPHVS---EHIVVVHNGIIENHEPLREELKARG 115 (240)
T ss_dssp CSSTTTSSCEEE---TTEEEEEEEEETTHHHHHHHHHHTT
T ss_pred CCCcccCCCccc---CCEEEEEEEEECCHHHHHHHHHhCC
Confidence 6 268999998 5699999999999999999998653
No 3
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=99.90 E-value=2e-23 Score=152.45 Aligned_cols=90 Identities=26% Similarity=0.400 Sum_probs=70.2
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEecC------------------------CCeeEEEEEEeeeecC
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNH------------------------VKKTYVGFHRLEIVDS 57 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~~------------------------~~~~~lgh~rl~i~~~ 57 (95)
|||+|+++.+ + .......++.+|+|||||+.|++..+. .+.++|||+||+|.|.
T Consensus 1 CGI~G~~~~~-~-~~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~igH~R~at~g~ 78 (459)
T 1ao0_A 1 CGVFGIWGHE-E-APQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATAGG 78 (459)
T ss_dssp CEEEEEESCT-B-HHHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEEEEEEECCC---
T ss_pred CEEEEEECCc-c-hHHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEEEEEEecCCCCC
Confidence 9999999763 2 222344678899999999999988632 1467899999999997
Q ss_pred C--CCCCcEEe---CCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 58 L--YGMQPMKL---HRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 58 ~--~~~QP~~~---~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
. .+.|||.. .+ ++++|+|||+|||+.+||++|++++
T Consensus 79 ~~~~n~qP~~~~~~~~-g~~~l~hNG~I~N~~~Lr~~L~~~g 119 (459)
T 1ao0_A 79 GGYENVQPLLFRSQNN-GSLALAHNGNLVNATQLKQQLENQG 119 (459)
T ss_dssp -CGGGSSSEEEBCTTT-CCEEEEEEEEETTHHHHHHHHHHTT
T ss_pred CCccCCCCceeccCCC-CcEEEEEEEEecCHHHHHHHHHhcC
Confidence 4 68999997 44 7899999999999999999998653
No 4
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.90 E-value=2.6e-23 Score=153.33 Aligned_cols=90 Identities=27% Similarity=0.283 Sum_probs=73.6
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEec-C------------------------CCeeEEEEEEeeeec
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDN-H------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~~-~------------------------~~~~~lgh~rl~i~~ 56 (95)
|||+|+++.+ + .......++.+|+|||||+.|++..+ . .+.++|||+||+|.|
T Consensus 1 CGI~G~~~~~-~-~~~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~~igH~R~sT~G 78 (504)
T 1ecf_A 1 CGIVGIAGVM-P-VNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAG 78 (504)
T ss_dssp CEEEEEECSS-C-CHHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCBTT
T ss_pred CEEEEEEcCh-h-HHHHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCEEEEEEccCcCC
Confidence 9999999863 2 23345567889999999999999864 1 146899999999999
Q ss_pred CC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 57 SL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 57 ~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
.+ .+.|||....+.+++|+|||+|||+.+||++|.++
T Consensus 79 ~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~ 117 (504)
T 1ecf_A 79 SSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEE 117 (504)
T ss_dssp BCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHH
T ss_pred CCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhh
Confidence 74 78999987532569999999999999999999864
No 5
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.88 E-value=1.9e-22 Score=151.32 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=72.5
Q ss_pred eeEEEEeCCCCCCcccHhhHHhhhccccCCCccceEEe-cC------------------------CCeeEEEEEEeeeec
Q psy15141 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYD-NH------------------------VKKTYVGFHRLEIVD 56 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~~~l~hRGpD~~g~~~~-~~------------------------~~~~~lgh~rl~i~~ 56 (95)
|||+|+++.+ ........++.+|+|||||+.|++.. .+ .+.++|||+||+|+|
T Consensus 1 CGI~G~~~~~--~~~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~~igH~R~at~g 78 (608)
T 2bpl_A 1 CGIVGAIAQR--DVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHG 78 (608)
T ss_dssp CEEEEEECSS--CCHHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSEEEEEEECCCSS
T ss_pred CeEEEEEcCC--chHHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCEEEEEEccCCCC
Confidence 9999999863 22344566788999999999999976 21 146789999999999
Q ss_pred C-C-CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 57 S-L-YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 57 ~-~-~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
. + .+.|||.+ ++++|+|||+|||+.+||++|++++
T Consensus 79 ~~~~~n~qP~~~---~~~~lvhNG~I~N~~~Lr~~L~~~g 115 (608)
T 2bpl_A 79 EPSEVNAHPHVS---EHIVVVHNGIIENHEPLREELKARG 115 (608)
T ss_dssp SCCGGGCSCEEE---TTEEEEEEECCTTHHHHHHHHHHHT
T ss_pred CCCccCCCCccC---CCEEEEEEEEEeCHHHHHHHHHhcC
Confidence 6 3 68899998 5699999999999999999998653
No 6
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.67 E-value=7.4e-17 Score=111.35 Aligned_cols=89 Identities=13% Similarity=0.231 Sum_probs=50.7
Q ss_pred CeeEEEEeCCCCCCcccHhhHH----hhhcccc--------CCCccceEEecC--------------------------C
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHN----FVKIQHR--------GPDAWRIEYDNH--------------------------V 42 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~----~~~l~hR--------GpD~~g~~~~~~--------------------------~ 42 (95)
||.++|+.+.. .....++.. +..++++ .+|+.|+...+. .
T Consensus 3 MCR~~~y~g~~--~~l~~ll~~p~~sL~~qs~~~~~~~~~~~~Dg~GIa~~~~~~~~~~~r~~~p~~~~~~l~~l~~~~~ 80 (274)
T 3mdn_A 3 LCRWAAYHGTP--IFLEDVISRPGHSLIAQSAHAEECKTATNGDGFGVAWYDARPEPGLYRDVYPAWSDPNLRAVAHHVR 80 (274)
T ss_dssp -CCEEEEEEEE--EEGGGTC------------------------CEEEEEESSSSSCEEEEESSCGGGCHHHHHHHHHCE
T ss_pred ccceeeecCCC--ccHHHHHhCccccHHHHhhhhhhcCCCCCCCeeEEEEEcCCCcEEEEecCCcccCcHHHHHHhhcCC
Confidence 99999999742 122222211 2122333 889999865431 1
Q ss_pred CeeEEEEEEeeeecC--CCCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhcc
Q psy15141 43 KKTYVGFHRLEIVDS--LYGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQN 94 (95)
Q Consensus 43 ~~~~lgh~rl~i~~~--~~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~~ 94 (95)
+.++|||+|++|.+. ..+.|||.. ++++++|||+|||+.+||++|++++
T Consensus 81 g~~~igHvR~AT~g~~s~~n~qPf~~---g~~~~~HNG~I~N~~~Lr~~L~~~g 131 (274)
T 3mdn_A 81 SGLFLSHVRASTGSCISRNNCHPFAA---RRWCFMHNGQVGGFEAFRKQADMAI 131 (274)
T ss_dssp EEEEEEEC------------CCCEEE---TTEEEEEEEEETTGGGGHHHHHHTS
T ss_pred CCEEEEEEccccCCCCcccCCCCccc---CCEEEEEeeEEcCHHHHHHHHHhhC
Confidence 457899999999986 278999997 5699999999999999999998764
No 7
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.64 E-value=2.4e-17 Score=112.82 Aligned_cols=82 Identities=22% Similarity=0.386 Sum_probs=63.5
Q ss_pred CeeEEEEeCCCCCCcccHhhHHhhhccccC------CCccceEEecC--------------------------CCeeEEE
Q psy15141 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRG------PDAWRIEYDNH--------------------------VKKTYVG 48 (95)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~~~l~hRG------pD~~g~~~~~~--------------------------~~~~~lg 48 (95)
||||+|+++.. + ..+...+.+|+||| +|+.|+...+. .+.+++|
T Consensus 1 MCgi~G~~~~~--~--~~~~~gL~~Lq~RG~~~~~~~DgaGIa~~~~~~~~~~k~~g~v~~~~~~~~l~~~~l~g~~~Ig 76 (257)
T 1te5_A 1 MCELLGMSANV--P--TDIVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETVIG 76 (257)
T ss_dssp -CCEEEEEEEE--E--EECEEEECCCCCCSSSSSSSBCEEEEEEEETTEEEEEEECSBSSCCHHHHHHHHSCCEEEEEEE
T ss_pred CCeEEEEEcCC--C--ccHHHHHHHHHhccCCCCCCCCeEEEEEEeCCceEEEECCCccccchHHHHHhhCCccccEEEE
Confidence 99999999752 1 23334678999999 79999976531 1357899
Q ss_pred EEEeeeecCC--CCCCcEEeC--CCCcEEEEEeeeEcChHHHHH
Q psy15141 49 FHRLEIVDSL--YGMQPMKLH--RYPRVTLICNGEIYNFKRLGV 88 (95)
Q Consensus 49 h~rl~i~~~~--~~~QP~~~~--~~~~~~lv~NGeIyN~~eL~~ 88 (95)
|+|+++.+.. .+.|||... . ++++++|||.|.|+++ |.
T Consensus 77 HvR~AT~G~~~~~NahPf~~~~~~-~~~a~aHNG~i~n~~~-r~ 118 (257)
T 1te5_A 77 HIRQANVGKVGLSNTHPFIRELGG-RYWTFAHNGQLADFQP-KP 118 (257)
T ss_dssp EEEECCCSCCSGGGCSCEEEEETT-EEEEEEEESCBSSCCC-CC
T ss_pred EeecCCCCCCCcCcCCCcEecCCC-CeEEEEecCcccCchh-hh
Confidence 9999999864 689999875 3 5799999999999987 54
No 8
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=98.75 E-value=2.8e-09 Score=78.62 Aligned_cols=44 Identities=23% Similarity=0.126 Sum_probs=38.1
Q ss_pred eeEEEEEEeeeecCCCCCCcEEeCCCCcEEEEEeeeEcChH---HHHHHHH
Q psy15141 44 KTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEIYNFK---RLGVQVR 91 (95)
Q Consensus 44 ~~~lgh~rl~i~~~~~~~QP~~~~~~~~~~lv~NGeIyN~~---eL~~~L~ 91 (95)
.+++||+||+|.. ..+.||+.+.+ ++++|+ |||||+. |||++|+
T Consensus 27 ~~~igh~R~~t~~-~~~~QP~~~~~-~~~~l~--GeI~N~~~~~eLr~~l~ 73 (503)
T 1q15_A 27 GEALSNGYLFIEQ-NGHYQKCEMER-GTAYLI--GSLYNRTFLIGLAGVWE 73 (503)
T ss_dssp EEEETTEEEEEET-TCCEEEEECSS-SEEEEE--ECCSCHHHHHHHHTTTC
T ss_pred ceeEeeeeEEEcC-CCCCCCcCcCC-CeEEEE--EEEeCCCChHHHHHHhh
Confidence 5789999999975 47899999876 778888 9999999 9999874
No 9
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=98.66 E-value=9.1e-09 Score=76.08 Aligned_cols=47 Identities=17% Similarity=0.039 Sum_probs=34.1
Q ss_pred cccCCCccceEEecCCCeeEEEEEEeeeecCCCCCCcEEeCC---CCcEEEEEeeeEcChHHHHHHH
Q psy15141 27 QHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHR---YPRVTLICNGEIYNFKRLGVQV 90 (95)
Q Consensus 27 ~hRGpD~~g~~~~~~~~~~~lgh~rl~i~~~~~~~QP~~~~~---~~~~~lv~NGeIyN~~eL~~~L 90 (95)
.+|+||..+.++... ...||+...+ .++++|+|||||||+.|||++|
T Consensus 40 ~~r~p~~~~~~~~~~-----------------~~~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L 89 (513)
T 1jgt_A 40 PQGERSLAATLVHAP-----------------SVAPDRAVARSLTGAPTTAVLAGEIYNRDELLSVL 89 (513)
T ss_dssp TTGGGSCEEEEEECT-----------------TSCGGGGEEEECSSSSEEEEEEEEESCHHHHHHTS
T ss_pred ccCCCccccceeeCC-----------------ccCCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHh
Confidence 567777666654421 1268876542 1679999999999999999988
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=98.31 E-value=3.3e-07 Score=74.40 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=37.5
Q ss_pred CeeEEEEEEeeeecCC--CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 43 KKTYVGFHRLEIVDSL--YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 43 ~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
+.++++|+|+||...+ ...|||. +|+|||||.|...+|+++++|
T Consensus 202 g~~aigH~RySTnt~p~w~~AQPf~-------~laHNGeInn~~~nr~~m~ar 247 (1479)
T 1ea0_A 202 SDFAIYHQRYSTNTFPTWPLAQPFR-------MLAHNGEINTVKGNVNWMKAH 247 (1479)
T ss_dssp BSEEEEEECCCSCSCCCSTTSSCCS-------SEEEEECCTTHHHHHHHHHHH
T ss_pred eeEEEeeecccCCCCCCcccCCccE-------EEEECChhhCHHHHHHHHHHh
Confidence 4579999999998864 6889994 389999999999999988643
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=98.16 E-value=2.1e-06 Score=69.97 Aligned_cols=66 Identities=17% Similarity=-0.014 Sum_probs=49.8
Q ss_pred hHHhhhccccCCCccceEEecC--------------------------CCeeEEEEEEeeeecCC--CCCCcEEeCCCCc
Q psy15141 20 EHNFVKIQHRGPDAWRIEYDNH--------------------------VKKTYVGFHRLEIVDSL--YGMQPMKLHRYPR 71 (95)
Q Consensus 20 ~~~~~~l~hRGpD~~g~~~~~~--------------------------~~~~~lgh~rl~i~~~~--~~~QP~~~~~~~~ 71 (95)
+..+.+++||+.++..+...+. .+.++++|+|+||...+ ..+|||.
T Consensus 149 y~~r~~le~~~~~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL~~~~~~g~~aigH~RySTnt~p~w~~AQPf~------ 222 (1520)
T 1ofd_A 149 YIARSIIGKKLAEDFYVCSFSCRTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMR------ 222 (1520)
T ss_dssp HHHHHHHGGGCBTTBEEEEEESSEEEEEESSCHHHHHHHBHHHHCTTCCBSEEEEEECCCSSSCCCGGGSSCCS------
T ss_pred HHHHHHHHhhccCCEEEEEecCcEEEEeCCccHHHHhhhhhhccccccceeEEEEEccccCCCCCCcccCCchh------
Confidence 3346799999976556655442 24689999999998864 6889995
Q ss_pred EEEEEeeeEcChHHHHHHHHh
Q psy15141 72 VTLICNGEIYNFKRLGVQVRS 92 (95)
Q Consensus 72 ~~lv~NGeIyN~~eL~~~L~~ 92 (95)
+|+|||||.|...+|....+
T Consensus 223 -~LaHNGeInt~~~nrnwm~a 242 (1520)
T 1ofd_A 223 -LLGHNGEINTLLGNINWMAA 242 (1520)
T ss_dssp -SEEEEECCTTHHHHHHHHHH
T ss_pred -eeEecchhhcHHHHHHHHHH
Confidence 38999999999999954443
No 12
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=75.25 E-value=3.5 Score=34.49 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=25.7
Q ss_pred eeEEEEeCCCCCCccc---HhhHHhhhccccC--------CCccceEE
Q psy15141 2 CGIWAIFGHETSNYLT---SCEHNFVKIQHRG--------PDAWRIEY 38 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~---~~~~~~~~l~hRG--------pD~~g~~~ 38 (95)
|||.++.+.++..+.. ..+.++..|.||| -|+.|+..
T Consensus 1 CGvg~va~~~G~~sh~iv~~al~~L~~m~HRG~~~ad~~tGDGaGil~ 48 (1520)
T 1ofd_A 1 CGVGFIANLRGKPDHTLVEQALKALGCMEHRGGCSADNDSGDGAGVMT 48 (1520)
T ss_dssp CEEEEEECSSSCCBSHHHHHHHHHHHHTGGGSCBCTTSSSBSCEEEEE
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccCcccCCCCCCCceeeec
Confidence 9999999876554422 3345678999999 35566653
No 13
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=67.31 E-value=4.7 Score=33.71 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=25.6
Q ss_pred eeEEEEeCCCCCCccc---HhhHHhhhccccCC--------CccceE
Q psy15141 2 CGIWAIFGHETSNYLT---SCEHNFVKIQHRGP--------DAWRIE 37 (95)
Q Consensus 2 cGI~g~~~~~~~~~~~---~~~~~~~~l~hRGp--------D~~g~~ 37 (95)
|||.++.+.++..+.. ..+.++..|.|||- |+.|+.
T Consensus 1 CGvg~va~~~G~~sh~~v~~al~aL~~m~HRG~~~ad~~tGDGaGil 47 (1479)
T 1ea0_A 1 CGVGFIAAIDGKPRRSVVEKGIEALKAVWHRGAVDADGKTGDGAGIH 47 (1479)
T ss_dssp CEECEEEETTCCCBHHHHHHHHHHHTSCGGGSCCCTTSSCCSCBCEE
T ss_pred CeEEEEEEcCCCccHHHHHHHHHHHHhccccCccCCCCCCCCceeee
Confidence 9999999876554332 23445779999987 667766
No 14
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=59.92 E-value=4.6 Score=21.54 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=11.3
Q ss_pred CcEEEEEeeeEcC
Q psy15141 70 PRVTLICNGEIYN 82 (95)
Q Consensus 70 ~~~~lv~NGeIyN 82 (95)
+.+.|.++|++|-
T Consensus 38 ~~v~I~H~G~~Y~ 50 (63)
T 2loj_A 38 GKVIIDHNGQEYL 50 (63)
T ss_dssp CEEEEEETTEEEE
T ss_pred CEEEEEeCCeEEE
Confidence 6789999999994
No 15
>2jra_A Protein RPA2121; domain-swapped dimer, structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris}
Probab=55.75 E-value=5.7 Score=21.44 Aligned_cols=13 Identities=8% Similarity=0.314 Sum_probs=11.4
Q ss_pred CcEEEEEeeeEcC
Q psy15141 70 PRVTLICNGEIYN 82 (95)
Q Consensus 70 ~~~~lv~NGeIyN 82 (95)
..+.|.+||++|-
T Consensus 42 ~ev~I~H~G~~Y~ 54 (67)
T 2jra_A 42 REIVIAHGDDRYR 54 (67)
T ss_dssp SEEEEEETTEEEE
T ss_pred CEEEEEeCCeEEE
Confidence 6689999999994
No 16
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=48.66 E-value=21 Score=23.52 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=27.2
Q ss_pred CCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 60 GMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 60 ~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
..+|++.++ ++++|=+.+.|.|..+|..+|..-
T Consensus 166 ~~gp~vTDn-Gn~IlD~~~~i~~p~~l~~~l~~i 198 (226)
T 2pjm_A 166 KRGPVITDN-GNMIIDVFMNIDDAIELEKEINNI 198 (226)
T ss_dssp SSSBCBCTT-SCEEEEEECCCSCHHHHHHHHHTS
T ss_pred CCCcEEcCC-CCEEEEeCCCCCCHHHHHHHhcCC
Confidence 457999887 888877678999999999998753
No 17
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=42.81 E-value=17 Score=24.10 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=24.8
Q ss_pred CCcEEeCCCCcEEE-EEeeeEcChHHHHHHHHhc
Q psy15141 61 MQPMKLHRYPRVTL-ICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 61 ~QP~~~~~~~~~~l-v~NGeIyN~~eL~~~L~~~ 93 (95)
.+|++.++ ++++| ++.++|-|..+|.++|..-
T Consensus 166 g~~~vTDn-GN~IlD~~~~~i~dp~~l~~~L~~i 198 (228)
T 4gmk_A 166 GSLLHTDS-DNYIIDLHLGKIENPKELGDYLINQ 198 (228)
T ss_dssp SSBCCCTT-SCEEEEECCSCCSCHHHHHHHHHTS
T ss_pred CCeEEecC-CCEEEEecCCCCCCHHHHHHHHhCC
Confidence 35887766 77766 5678999999999988753
No 18
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.34 E-value=20 Score=20.97 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=20.3
Q ss_pred cEEEEEeeeE--cChHHHHHHHHhccC
Q psy15141 71 RVTLICNGEI--YNFKRLGVQVRSQNG 95 (95)
Q Consensus 71 ~~~lv~NGeI--yN~~eL~~~L~~~~~ 95 (95)
+..+|+-|.+ +++.++++.+++.+|
T Consensus 25 G~~~v~TG~l~~~~R~e~~~~i~~~Gg 51 (112)
T 2ebu_A 25 GLIFVITGVLESIERDEAKSLIERYGG 51 (112)
T ss_dssp TCEEEECSCCSSSCHHHHHHHHHHTTC
T ss_pred CCEEEEeeeCCCCCHHHHHHHHHHcCC
Confidence 3678899999 589999998887765
No 19
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=37.87 E-value=26 Score=20.26 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=19.4
Q ss_pred EEEEEeeeE--cChHHHHHHHHhccC
Q psy15141 72 VTLICNGEI--YNFKRLGVQVRSQNG 95 (95)
Q Consensus 72 ~~lv~NGeI--yN~~eL~~~L~~~~~ 95 (95)
..+|+-|.+ +.+.++++.+++.||
T Consensus 36 ~~~v~TG~l~~~~R~e~~~~i~~~Gg 61 (109)
T 2k6g_A 36 LIFVITGVLESIERDEAKSLIERYGG 61 (109)
T ss_dssp CEEEEESBCSSCCHHHHHHHHHHTTC
T ss_pred CEEEEeeeCCCCCHHHHHHHHHHcCC
Confidence 578888998 579999988887665
No 20
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=36.27 E-value=43 Score=22.10 Aligned_cols=34 Identities=9% Similarity=-0.008 Sum_probs=27.0
Q ss_pred CCCCcEEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 59 YGMQPMKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 59 ~~~QP~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
...+|++.++ ++++|=+-..|-|..+|.++|..-
T Consensus 165 ~~~gp~vTDn-GN~IlD~~~~i~dp~~l~~~L~~i 198 (226)
T 3ixq_A 165 RKRGPVITDN-GNMIIDVFMNIDDAIELEKEINNI 198 (226)
T ss_dssp SSSSBCBCTT-SCEEEEEECCCSCHHHHHHHHHTS
T ss_pred cCCCceEecC-CCEEEEecCCCCCHHHHHHHHhCC
Confidence 3457999887 888876667899999999988753
No 21
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=35.95 E-value=14 Score=20.38 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=12.7
Q ss_pred CcEEEEEeeeEcChHH
Q psy15141 70 PRVTLICNGEIYNFKR 85 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~e 85 (95)
+..+++.+|.+|+--+
T Consensus 21 ~~~wv~i~g~VYDvT~ 36 (88)
T 2ibj_A 21 DKNWFIIHNNVYDVTA 36 (88)
T ss_dssp TEEEEEETTEEEECGG
T ss_pred CCEEEEECCEEEECCc
Confidence 4589999999998544
No 22
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=35.91 E-value=58 Score=18.82 Aligned_cols=26 Identities=8% Similarity=0.293 Sum_probs=22.3
Q ss_pred CcEEEEEeeeEcChHHHHHHHHhccC
Q psy15141 70 PRVTLICNGEIYNFKRLGVQVRSQNG 95 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~~L~~~~~ 95 (95)
.++-|+.-|.=.||.++++.++..||
T Consensus 49 e~lkItIEG~dIdfd~I~~~IE~~Gg 74 (100)
T 3bpd_A 49 ENIKITILGNNLDYEQIKGVIEDMGG 74 (100)
T ss_dssp EEEEEEEEEEEECHHHHHHHHHTTTC
T ss_pred cEEEEEEEecCCCHHHHHHHHHHcCC
Confidence 34778889999999999999998775
No 23
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=34.84 E-value=15 Score=19.99 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=12.6
Q ss_pred CcEEEEEeeeEcChHH
Q psy15141 70 PRVTLICNGEIYNFKR 85 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~e 85 (95)
++.+++.+|.+|+--+
T Consensus 18 ~~~wv~i~g~VYDvT~ 33 (82)
T 1x3x_A 18 NDLWIIYDGEVHDMTS 33 (82)
T ss_dssp TEEEEEETTEEEECGG
T ss_pred CCEEEEECCEEEECCc
Confidence 4588999999998544
No 24
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=34.16 E-value=16 Score=20.53 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=12.5
Q ss_pred CcEEEEEeeeEcChHH
Q psy15141 70 PRVTLICNGEIYNFKR 85 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~e 85 (95)
+..+++.+|.+||--.
T Consensus 19 ~~~wv~i~g~VYDvT~ 34 (93)
T 1cyo_A 19 KSTWLILHYKVYDLTK 34 (93)
T ss_dssp TEEEEEETTEEEECTT
T ss_pred CCEEEEECCEEEECCC
Confidence 4588999999997543
No 25
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=33.71 E-value=16 Score=20.29 Aligned_cols=16 Identities=13% Similarity=0.412 Sum_probs=12.5
Q ss_pred CcEEEEEeeeEcChHH
Q psy15141 70 PRVTLICNGEIYNFKR 85 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~e 85 (95)
+..+++.+|.+||--+
T Consensus 22 ~~~wv~i~g~VYDvT~ 37 (90)
T 1cxy_A 22 DDCWMAIHGKVYDLTP 37 (90)
T ss_dssp TEEEEEETTEEEECTT
T ss_pred CCEEEEECCEEEECcc
Confidence 4588999999997543
No 26
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=33.63 E-value=45 Score=19.94 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=23.0
Q ss_pred EEeCCCCcEEEEEeeeEcChHHHHHHHHhc
Q psy15141 64 MKLHRYPRVTLICNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 64 ~~~~~~~~~~lv~NGeIyN~~eL~~~L~~~ 93 (95)
+.+.+ |+++-++.|.-.+.++|++.|++.
T Consensus 132 lID~~-G~i~~~~~g~~~~~~~i~~~l~~~ 160 (170)
T 3me7_A 132 VLSPE-LQIKDYIYGVNYNYLEFVNALRLA 160 (170)
T ss_dssp EECTT-SBEEEEEESSSCCHHHHHHHHHHH
T ss_pred EECCC-CeEEEEEeCCCCCHHHHHHHHHHh
Confidence 34555 888888999989999999988753
No 27
>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A
Probab=33.39 E-value=15 Score=26.02 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=11.9
Q ss_pred cEEEEEeeeEcChH
Q psy15141 71 RVTLICNGEIYNFK 84 (95)
Q Consensus 71 ~~~lv~NGeIyN~~ 84 (95)
+-++++-||+||+.
T Consensus 175 ~KiVvyk~eVYNyD 188 (390)
T 1i9w_A 175 NKIVVYKDEVFNQD 188 (390)
T ss_pred ceeEEEccceeccC
Confidence 35899999999984
No 28
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=33.30 E-value=16 Score=26.36 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=11.9
Q ss_pred cEEEEEeeeEcChH
Q psy15141 71 RVTLICNGEIYNFK 84 (95)
Q Consensus 71 ~~~lv~NGeIyN~~ 84 (95)
+-++++-||+||+.
T Consensus 175 ~KiVvyk~eVYNyD 188 (439)
T 3j0f_E 175 HKVVIHRGLVYNYD 188 (439)
T ss_pred ceEEEecceeeccC
Confidence 35899999999985
No 29
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=33.29 E-value=45 Score=18.22 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=18.9
Q ss_pred CcEEEEEeee-EcChHHHHHHHHh
Q psy15141 70 PRVTLICNGE-IYNFKRLGVQVRS 92 (95)
Q Consensus 70 ~~~~lv~NGe-IyN~~eL~~~L~~ 92 (95)
+..++..||+ |.++.+++..|..
T Consensus 23 GD~I~~ing~~v~~~~d~~~~l~~ 46 (95)
T 3id1_A 23 GTELKAVDGIETPDWDAVRLQLVD 46 (95)
T ss_dssp TCEEEEETTEECSSHHHHHHHHHH
T ss_pred CCEEEEECCEECCCHHHHHHHHHH
Confidence 5688999996 8888999988864
No 30
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=32.86 E-value=17 Score=20.39 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=12.8
Q ss_pred CcEEEEEeeeEcChHH
Q psy15141 70 PRVTLICNGEIYNFKR 85 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~e 85 (95)
+..+++.+|.+||--.
T Consensus 24 ~~~wv~i~g~VYDvT~ 39 (92)
T 3ner_A 24 KELWLVIHGRVYDVTR 39 (92)
T ss_dssp TEEEEEETTEEEECGG
T ss_pred CCEEEEECCEEEEccc
Confidence 4588999999998544
No 31
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=32.76 E-value=17 Score=20.19 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=13.2
Q ss_pred CcEEEEEeeeEcChHHH
Q psy15141 70 PRVTLICNGEIYNFKRL 86 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL 86 (95)
+..+++.+|.+||--..
T Consensus 20 ~~~wv~i~g~VYDvT~f 36 (88)
T 3lf5_A 20 DDCWICIRGFVYNVSPY 36 (88)
T ss_dssp TEEEEEETTEEEECGGG
T ss_pred CCEEEEECCEEEECccc
Confidence 45889999999986543
No 32
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=31.96 E-value=23 Score=17.75 Aligned_cols=12 Identities=8% Similarity=0.255 Sum_probs=9.0
Q ss_pred hHHHHHHHHhcc
Q psy15141 83 FKRLGVQVRSQN 94 (95)
Q Consensus 83 ~~eL~~~L~~~~ 94 (95)
-.+||++|++++
T Consensus 15 V~eLK~eLk~Rg 26 (50)
T 1zrj_A 15 VNELREELQRRG 26 (50)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 368888888765
No 33
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=30.01 E-value=22 Score=25.66 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=11.9
Q ss_pred cEEEEEeeeEcChH
Q psy15141 71 RVTLICNGEIYNFK 84 (95)
Q Consensus 71 ~~~lv~NGeIyN~~ 84 (95)
+-++++-||+||+.
T Consensus 175 ~KiVvyk~eVYNyD 188 (442)
T 3j0c_A 175 RKIVQYAGEIYNYD 188 (442)
T ss_dssp SEEEEETTEEECCC
T ss_pred ceeEEecceeeccC
Confidence 46899999999984
No 34
>3n40_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 2xfb_A
Probab=29.44 E-value=19 Score=25.53 Aligned_cols=14 Identities=21% Similarity=0.698 Sum_probs=11.8
Q ss_pred cEEEEEeeeEcChH
Q psy15141 71 RVTLICNGEIYNFK 84 (95)
Q Consensus 71 ~~~lv~NGeIyN~~ 84 (95)
+-++++-||+||+.
T Consensus 177 ~KiVvyk~eVYNyD 190 (393)
T 3n40_F 177 NKIVVYKGDVYNMD 190 (393)
T ss_dssp SEEEEETTEEEECC
T ss_pred ceeEEecceeeccC
Confidence 36899999999984
No 35
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=28.98 E-value=18 Score=20.84 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=13.4
Q ss_pred CcEEEEEeeeEcChHHH
Q psy15141 70 PRVTLICNGEIYNFKRL 86 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL 86 (95)
+..+|+++|.+||--+.
T Consensus 23 ~~~wv~i~g~VYDvT~f 39 (104)
T 1hko_A 23 KSTWLILHYKVYDLTKF 39 (104)
T ss_dssp SSBEEEETTEEEEHHHH
T ss_pred CCEEEEECCEEEECCcc
Confidence 45789999999986554
No 36
>4eo1_A Attachment protein G3P; TOLA binding protein, infection, filamentous phage, ATT protein, TOLA binding, coat protein, TOLA, phage coat; 1.80A {Enterobacteria phage ike}
Probab=27.91 E-value=37 Score=18.24 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=12.8
Q ss_pred EEeCCCCcEEEEEeeeEcC
Q psy15141 64 MKLHRYPRVTLICNGEIYN 82 (95)
Q Consensus 64 ~~~~~~~~~~lv~NGeIyN 82 (95)
|..++ +...+.|||-||+
T Consensus 24 ~k~d~-~~~Y~n~~GCiYe 41 (70)
T 4eo1_A 24 FKGDE-GGFYINYNGCEYE 41 (70)
T ss_dssp EECTT-SCEEEEETTEEEE
T ss_pred EeeCC-CceEEEEcCeEEE
Confidence 34434 5678899999986
No 37
>3n44_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG; 2.35A {Chikungunya virus} PDB: 3n41_F* 3n42_F* 3n43_F* 2xfc_A
Probab=27.74 E-value=21 Score=25.84 Aligned_cols=14 Identities=21% Similarity=0.698 Sum_probs=11.9
Q ss_pred cEEEEEeeeEcChH
Q psy15141 71 RVTLICNGEIYNFK 84 (95)
Q Consensus 71 ~~~lv~NGeIyN~~ 84 (95)
+-++++-||+||+.
T Consensus 197 ~KIVvyk~eVYNyD 210 (473)
T 3n44_F 197 NKIVVYKGDVYNMD 210 (473)
T ss_dssp SEEEEETTEEEECC
T ss_pred ceeEEecceeeccC
Confidence 36899999999984
No 38
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=27.36 E-value=57 Score=18.76 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=22.0
Q ss_pred CcEEEEEeeeEcChHHHHHHHHhccC
Q psy15141 70 PRVTLICNGEIYNFKRLGVQVRSQNG 95 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~~L~~~~~ 95 (95)
.++-++.-|+=.||.++++.++..||
T Consensus 49 e~lkitiEG~~id~d~I~~~IE~~Gg 74 (97)
T 2raq_A 49 ENIKVTIQGNDLDFDEITRAIESYGG 74 (97)
T ss_dssp EEEEEEEECSSCCHHHHHHHHHHTTC
T ss_pred cEEEEEEEecCCCHHHHHHHHHHcCC
Confidence 34778888999999999999988775
No 39
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=27.26 E-value=31 Score=17.32 Aligned_cols=11 Identities=18% Similarity=0.160 Sum_probs=8.6
Q ss_pred HHHHHHHHhcc
Q psy15141 84 KRLGVQVRSQN 94 (95)
Q Consensus 84 ~eL~~~L~~~~ 94 (95)
.+||++|.+++
T Consensus 11 ~eLK~~Lk~RG 21 (51)
T 1h1j_S 11 VQLKDLLTKRN 21 (51)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 68888888765
No 40
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=26.46 E-value=29 Score=18.88 Aligned_cols=15 Identities=7% Similarity=0.306 Sum_probs=12.1
Q ss_pred cEEEEEeeeEcChHH
Q psy15141 71 RVTLICNGEIYNFKR 85 (95)
Q Consensus 71 ~~~lv~NGeIyN~~e 85 (95)
+.+|+.+|.+||--.
T Consensus 21 ~~wv~i~g~VYDvt~ 35 (82)
T 1mj4_A 21 GIWVTLGSEVFDVTE 35 (82)
T ss_dssp EEEEEETTEEEECTT
T ss_pred CeEEEECCEEEEchH
Confidence 388999999998544
No 41
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=26.13 E-value=71 Score=20.90 Aligned_cols=33 Identities=6% Similarity=-0.026 Sum_probs=25.9
Q ss_pred CCCcEEeCCCCcEEEE-EeeeEcChHHHHHHHHhc
Q psy15141 60 GMQPMKLHRYPRVTLI-CNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 60 ~~QP~~~~~~~~~~lv-~NGeIyN~~eL~~~L~~~ 93 (95)
...|++.++ ++++|= +.+.|.|..+|.++|..-
T Consensus 167 ~~~~~vTdn-Gn~IlD~~~~~i~~p~~l~~~l~~i 200 (229)
T 1lk5_A 167 KDGPVITDN-GNFIIDAKFPRIDDPLDMEIELNTI 200 (229)
T ss_dssp SSSBCCCTT-SCEEEEEECSCCSCHHHHHHHHHTS
T ss_pred CCCcEEcCC-CCEEEEeeCCCCCCHHHHHHHHhcC
Confidence 457998877 777764 567899999999998753
No 42
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=25.88 E-value=68 Score=18.39 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.6
Q ss_pred cEEEEEeeeEcChHHHHHHHHhccC
Q psy15141 71 RVTLICNGEIYNFKRLGVQVRSQNG 95 (95)
Q Consensus 71 ~~~lv~NGeIyN~~eL~~~L~~~~~ 95 (95)
++-++.-|+=.||.++++.++..||
T Consensus 49 ~lkItIEG~~idfd~I~~~IE~~Gg 73 (96)
T 2x3d_A 49 GLMIIIEGTSLNFDDIRKMLEEEGC 73 (96)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHTTC
T ss_pred EEEEEEEecCCCHHHHHHHHHHcCC
Confidence 4778888999999999999988775
No 43
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=24.55 E-value=54 Score=19.08 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=18.6
Q ss_pred EEEEEeeeEc-ChHHHHHHHHhccC
Q psy15141 72 VTLICNGEIY-NFKRLGVQVRSQNG 95 (95)
Q Consensus 72 ~~lv~NGeIy-N~~eL~~~L~~~~~ 95 (95)
..+|+-|.+- ++.++++.+++.+|
T Consensus 14 ~~~ViTG~l~~~R~e~k~~ie~~Gg 38 (113)
T 2cok_A 14 MKILTLGKLSRNKDEVKAMIEKLGG 38 (113)
T ss_dssp CEEEECSCCSSCHHHHHHHHHHTTC
T ss_pred CEEEEEecCCCCHHHHHHHHHHCCC
Confidence 5788889984 57888888877665
No 44
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=23.41 E-value=79 Score=21.00 Aligned_cols=31 Identities=13% Similarity=0.013 Sum_probs=24.8
Q ss_pred CcEEeCCCCcEEEE-EeeeEcChHHHHHHHHhc
Q psy15141 62 QPMKLHRYPRVTLI-CNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 62 QP~~~~~~~~~~lv-~NGeIyN~~eL~~~L~~~ 93 (95)
+|++.++ ++++|= +.+.|.|..+|.++|..-
T Consensus 175 ~p~vTDn-GN~IlD~~~~~i~dp~~l~~~l~~i 206 (239)
T 3uw1_A 175 TPYVTDN-GNEILDVKGLRIDDPRALEAAINGW 206 (239)
T ss_dssp SBCCCTT-SCEEEEEESCCBSCHHHHHHHHHTS
T ss_pred CceEccC-CCEEEEecCCCCCCHHHHHHHHcCC
Confidence 5998877 777665 478999999999998653
No 45
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=22.93 E-value=40 Score=18.44 Aligned_cols=12 Identities=8% Similarity=0.224 Sum_probs=9.4
Q ss_pred hHHHHHHHHhcc
Q psy15141 83 FKRLGVQVRSQN 94 (95)
Q Consensus 83 ~~eL~~~L~~~~ 94 (95)
-.|||++|++++
T Consensus 31 VaeLK~eLk~RG 42 (75)
T 2kvu_A 31 VAELKQELKLRS 42 (75)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 468999998775
No 46
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=22.23 E-value=83 Score=17.69 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=18.9
Q ss_pred CCCCcEEeCCCCcEEEEEeeeEcChHH
Q psy15141 59 YGMQPMKLHRYPRVTLICNGEIYNFKR 85 (95)
Q Consensus 59 ~~~QP~~~~~~~~~~lv~NGeIyN~~e 85 (95)
.+-||=..-. -++.+-++|||+-+.+
T Consensus 37 knlqpRilYP-akLsf~~eGeiksF~d 62 (88)
T 2jrb_A 37 HKCQPRLLYP-AKLSITIDGETKVFHD 62 (88)
T ss_dssp TTSCCEEETT-TEEEEESSSCEEEESS
T ss_pred cCCCcccccc-eeeEEEECCeEeccCC
Confidence 4568865544 6789999999997643
No 47
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=22.22 E-value=38 Score=15.69 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=11.0
Q ss_pred HHhhhccccCCCcc
Q psy15141 21 HNFVKIQHRGPDAW 34 (95)
Q Consensus 21 ~~~~~l~hRGpD~~ 34 (95)
..+++|.-||.|+.
T Consensus 10 qelqaleargtdsn 23 (40)
T 1abz_A 10 QELQALEARGTDSN 23 (40)
T ss_dssp HHHHHHHHTCSSCS
T ss_pred HHHHHHHHcCCCch
Confidence 35778999999875
No 48
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=20.94 E-value=73 Score=16.82 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=16.7
Q ss_pred cEEEEEee-eEcChHHHHHHHHhccC
Q psy15141 71 RVTLICNG-EIYNFKRLGVQVRSQNG 95 (95)
Q Consensus 71 ~~~lv~NG-eIyN~~eL~~~L~~~~~ 95 (95)
+.+++++| ..-...+|++.+++.||
T Consensus 10 g~~~~i~g~~~~~~~~l~~~i~~~GG 35 (92)
T 4id3_A 10 NCVIYINGYTKPGRLQLHEMIVLHGG 35 (92)
T ss_dssp TCEEEECSCCSSCHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHCCC
Confidence 36788888 33456777776666654
No 49
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=20.54 E-value=78 Score=21.27 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=25.3
Q ss_pred CCcEEeCCCCcEEEE-EeeeEcChHHHHHHHHhc
Q psy15141 61 MQPMKLHRYPRVTLI-CNGEIYNFKRLGVQVRSQ 93 (95)
Q Consensus 61 ~QP~~~~~~~~~~lv-~NGeIyN~~eL~~~L~~~ 93 (95)
.+|++.++ ++++|= +.++|.|..+|.++|..-
T Consensus 190 ~gp~vTDn-GN~IlD~~f~~i~dp~~l~~~l~~i 222 (255)
T 3hhe_A 190 DDPFKTDG-GHFIFDAFWGRILQPKLLSEALLAI 222 (255)
T ss_dssp TEECCCTT-SCEEEEECCSCCSCHHHHHHHHHTS
T ss_pred CCcEEcCC-CCEEEEeeCCCcCCHHHHHHHHhcC
Confidence 46998877 777765 467899999999998653
No 50
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=20.46 E-value=53 Score=19.13 Aligned_cols=19 Identities=16% Similarity=0.400 Sum_probs=14.9
Q ss_pred CcEEEEEeeeEcChHHHHH
Q psy15141 70 PRVTLICNGEIYNFKRLGV 88 (95)
Q Consensus 70 ~~~~lv~NGeIyN~~eL~~ 88 (95)
+..+|+.+|.+||--+...
T Consensus 38 ~d~wvvi~G~VYDVT~fl~ 56 (112)
T 2keo_A 38 GGFWTVIDGKVYDIKDFQT 56 (112)
T ss_dssp TCCEEEETTEEEEHHHHHH
T ss_pred CCEEEEECCEEEECCcchh
Confidence 4578999999999776543
No 51
>2lpd_A Uncharacterized protein; infectious disease, melioidosis, seattle structural genomics for infectious disease, ssgcid, drug target; NMR {Burkholderia pseudomallei}
Probab=20.32 E-value=37 Score=19.47 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=15.1
Q ss_pred CCCCcEEeCCCCcEEEEEeee
Q psy15141 59 YGMQPMKLHRYPRVTLICNGE 79 (95)
Q Consensus 59 ~~~QP~~~~~~~~~~lv~NGe 79 (95)
...-||.+++ +.+.++.|-|
T Consensus 15 ~~~~PFDd~~-~~f~VLvN~E 34 (95)
T 2lpd_A 15 QTQGPGSMDD-ELYFVVRNNE 34 (95)
T ss_dssp CSSCSCSSCC-CCEEEEECSS
T ss_pred hhcCCCcCCC-CcEEEEEcCC
Confidence 3445998877 8888888865
No 52
>2dsm_A Hypothetical protein YQAI; homodimer, domain swapped dimer, inter-domain beta sheet, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.372.1.1
Probab=20.17 E-value=84 Score=17.02 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=19.5
Q ss_pred cEEEEEeeeEcChHHHHHHHHhccC
Q psy15141 71 RVTLICNGEIYNFKRLGVQVRSQNG 95 (95)
Q Consensus 71 ~~~lv~NGeIyN~~eL~~~L~~~~~ 95 (95)
.-.|+|+|++.=...|.+-|....|
T Consensus 33 d~yl~f~GeiIl~eNl~~Yl~e~~g 57 (72)
T 2dsm_A 33 DDYVIDGGEIILRENLERYLREQLG 57 (72)
T ss_dssp SCEEEETTEEEEHHHHHHHHHHTCC
T ss_pred CeEEEECCeeehHHHHHHHHHHHhC
Confidence 3578889999988888888876543
No 53
>4e1p_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 1.73A {Mycobacterium tuberculosis}
Probab=20.07 E-value=81 Score=16.46 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.5
Q ss_pred CcEEEEEeeeEc-------ChHHHHHHHH
Q psy15141 70 PRVTLICNGEIY-------NFKRLGVQVR 91 (95)
Q Consensus 70 ~~~~lv~NGeIy-------N~~eL~~~L~ 91 (95)
..+.+.+||.-| |..+||+.|.
T Consensus 21 eTV~F~ldG~~YeIDLs~~nA~~lr~~L~ 49 (61)
T 4e1p_A 21 ETVEFGLDGVTYEIDLSTKNATKLRGDLK 49 (61)
T ss_dssp EEEEEEETTEEEEEEECHHHHHHHHHHHH
T ss_pred cEEEEEECCEEEEEECCHHHHHHHHHHHH
Confidence 357788899888 7889998775
No 54
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=20.01 E-value=63 Score=17.50 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=11.9
Q ss_pred CcEEEEEeeeEcCh
Q psy15141 70 PRVTLICNGEIYNF 83 (95)
Q Consensus 70 ~~~~lv~NGeIyN~ 83 (95)
++..|++||-.|+.
T Consensus 19 G~~~Lv~~Gy~Y~~ 32 (87)
T 2rpr_A 19 GGRFLVHESFLYRK 32 (87)
T ss_dssp TEEEEEETTEEEEE
T ss_pred CCcEEEECCEEEEe
Confidence 77889999999864
Done!