RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15141
(95 letters)
>gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase)
asparagine synthase_B type. Asparagine synthetase B
catalyses the ATP-dependent conversion of aspartate to
asparagine. This enzyme is a homodimer, with each
monomer composed of a glutaminase domain and a
synthetase domain. The N-terminal glutaminase domain
hydrolyzes glutamine to glutamic acid and ammonia.
Length = 220
Score = 80.7 bits (200), Expect = 2e-20
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 2 CGIWAIFGHE-TSNYLTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYG 60
CGI I G + S + E + HRGPD I D V +G RL I+D G
Sbjct: 1 CGIAGIIGLDGASVDRATLERMLDALAHRGPDGSGIWIDEGV---ALGHRRLSIIDLSGG 57
Query: 61 MQPMKLHRYPRVTLICNGEIYNFKRL 86
QPM R+ L+ NGEIYN++ L
Sbjct: 58 AQPMVSED-GRLVLVFNGEIYNYREL 82
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase
(glutamine-hydrolyzing). This model describes the
glutamine-hydrolysing asparagine synthase. A poorly
conserved C-terminal extension was removed from the
model. Bacterial members of the family tend to have a
long, poorly conserved insert lacking from archaeal and
eukaryotic sequences. Multiple isozymes have been
demonstrated, such as in Bacillus subtilis. Long-branch
members of the phylogenetic tree (which typically were
also second or third candidate members from their
genomes) were removed from the seed alignment and score
below trusted cutoff [Amino acid biosynthesis,
Aspartate family].
Length = 466
Score = 66.6 bits (163), Expect = 2e-14
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 4 IWAIFGHET---SNYLTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYG 60
I F + + I HRGPDA IEY + +G RL I+D G
Sbjct: 1 IAGFFDLDDKAVEEDEAILRMS-DTIAHRGPDASGIEYKDGNAI--LGHRRLAIIDLSGG 57
Query: 61 MQPMKLHRYPRVTLICNGEIYNFKRL 86
QPM ++ NGEIYN + L
Sbjct: 58 AQPMSN-EGKTYVIVFNGEIYNHEEL 82
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino
acid transport and metabolism].
Length = 542
Score = 64.0 bits (156), Expect = 1e-13
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 1 MCGIWAIFGHETSNYLTSCEHNFVK----IQHRGPDAWRIEYDNHVKKTYVGFHRLEIVD 56
MCGI G L + + ++HRGPD + + +G RL IVD
Sbjct: 1 MCGI---AGILNFKNLIDAKSIIEEMTKLLRHRGPDDSGVWISLNAL---LGHRRLSIVD 54
Query: 57 SLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
G QPM + ++ NGEIYN + L
Sbjct: 55 LSGGRQPMIK-EGGKYAIVYNGEIYNVEEL 83
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional.
Length = 554
Score = 58.4 bits (142), Expect = 1e-11
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 1 MCGIWAIFGHETSNYL--TSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSL 58
MCGI+ I +T ++HRGPD W Y + +G RL IVD
Sbjct: 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPD-WSGIYAS--DNAILGHERLSIVDVN 57
Query: 59 YGMQPMKLHRYPRVTLICNGEIYNFKRL 86
G QP+ V L NGEIYN + L
Sbjct: 58 GGAQPLYNEDGTHV-LAVNGEIYNHQEL 84
>gnl|CDD|222208 pfam13537, GATase_7, Glutamine amidotransferase domain. This
domain is a class-II glutamine amidotransferase domain
found in a variety of enzymes such as asparagine
synthetase and glutamine-fructose-6-phosphate
transaminase.
Length = 120
Score = 47.9 bits (115), Expect = 1e-08
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 51 RLEIVDSLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
RL I DS G QPM + R ++ NGEIYN++ L
Sbjct: 3 RLSIDDSEGGAQPM-VSEDGRYVIVFNGEIYNYREL 37
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase).
The glutaminase domain catalyzes an amide nitrogen
transfer from glutamine to the appropriate substrate. In
this process, glutamine is hydrolyzed to glutamic acid
and ammonia. This domain is related to members of the
Ntn (N-terminal nucleophile) hydrolase superfamily and
is found at the N-terminus of enzymes such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). GLMS catalyzes the formation of
glucosamine 6-phosphate from fructose 6-phosphate and
glutamine in amino sugar synthesis. GPATase catalyzes
the first step in purine biosynthesis, an amide transfer
from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
Asparagine synthetase B synthesizes asparagine from
aspartate and glutamine. Beta-LS catalyzes the formation
of the beta-lactam ring in the beta-lactamase inhibitor
clavulanic acid. GltS synthesizes L-glutamate from
2-oxoglutarate and L-glutamine. These enzymes are
generally dimers, but GPATase also exists as a
homotetramer.
Length = 220
Score = 49.4 bits (118), Expect = 1e-08
Identities = 29/113 (25%), Positives = 39/113 (34%), Gaps = 29/113 (25%)
Query: 2 CGIWAIFGH--ETSNYLTSCEHNFVKIQHRGPDAWRI----------------------E 37
CGI+ I G S L ++HRGPD I +
Sbjct: 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALD 60
Query: 38 YDNHVKKTYVGF--HRLEIVD--SLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
+ K+ V RL S QP R+ L+ NGEIYN++ L
Sbjct: 61 LLDEPLKSGVALGHVRLATNGLPSEANAQPF-RSEDGRIALVHNGEIYNYREL 112
>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing).
Length = 578
Score = 49.0 bits (117), Expect = 3e-08
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 1 MCGIWAIFG-HETSNYLTSCEHNFVK-IQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSL 58
MCGI A+ G + S S + ++HRGPD W Y N + Y+ RL I+D
Sbjct: 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPD-WSGLYGN--EDCYLAHERLAIMDPE 57
Query: 59 YGMQPMKLHRYPRVTLICNGEIYNFKRL 86
G QP+ + + + NGEIYN K L
Sbjct: 58 SGDQPL-YNEDKTIVVTANGEIYNHKEL 84
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein;
Provisional.
Length = 586
Score = 48.9 bits (117), Expect = 3e-08
Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 1 MCGIWAIFG-HETSNYLTSCEHNFVK-IQHRGPDAWRIEYDNHVKKTY--VGFHRLEIVD 56
MCGI AIF + L K ++HRGPD I + TY + RL IVD
Sbjct: 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVD 60
Query: 57 SLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
G QP+ V L+ NGEIYN +
Sbjct: 61 LSDGKQPLLDDDET-VALMQNGEIYNHWEI 89
>gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase A system-associated
amidotransferase 1. The predicted protein-sorting
transpeptidase that we call exosortase (see TIGR02602)
has distinct subclasses that associated with different
types of exopolysaccharide production loci. This model
represents a distinct clade among a set of
amidotransferases largely annotated (not necessarily
accurately) as glutatime-hydrolyzing asparagine
synthases. Members of this clade are essentially
restricted to the characteristic exopolysaccharide
(EPS) regions that contain the exosortase 1 genome
(xrtA), in genomes that also have numbers of PEP-CTERM
domain (TIGR02595) proteins.
Length = 628
Score = 47.0 bits (112), Expect = 1e-07
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 1 MCGIWAIFGHETSNYLTSCE--HNFVKIQ-HRGPDAWRIEYDNHVKKTYVGFHRLEIVDS 57
MCGI IF T + Q HRGPD + + + +G RL I+D
Sbjct: 1 MCGITGIF-DLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIG---LGHRRLSIIDL 56
Query: 58 LYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
G QP+ + V ++ NGEIYNF+ L
Sbjct: 57 SGGQQPLF-NEDGSVVVVFNGEIYNFQEL 84
>gnl|CDD|222195 pfam13522, GATase_6, Glutamine amidotransferase domain. This
domain is a class-II glutamine amidotransferase domain
found in a variety of enzymes, such as asparagine
synthetase and glutamine--fructose-6-phosphate
transaminase.
Length = 130
Score = 40.7 bits (96), Expect = 9e-06
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 31 PDAWRIEYDNHVKKTYVGFHRLEIVD-SLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
PD + D + +G RL IVD S G QPM L R+ L+ NGEIYNF L
Sbjct: 1 PDFSGLWVDGGI---ALGHVRLAIVDLSEAGAQPM-LSADGRLVLVHNGEIYNFGEL 53
>gnl|CDD|234108 TIGR03104, trio_amidotrans, asparagine synthase family
amidotransferase. Members of this protein family are
closely related to several isoforms of asparagine
synthetase (glutamine amidotransferase) and typically
have been given this name in genome annotation to date.
Each is part of a conserved three-gene cassette
sparsely distributed across at least twenty different
species known so far, including alpha, beta, and gamma
Proteobacteria, Mycobacterium, and Prosthecochloris,
which is a member of the Chlorobi. The other two
members of the cassette are a probable protease and a
member of the GNAT family of acetyltransferases.
Length = 589
Score = 38.5 bits (90), Expect = 1e-04
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 29 RGPDAWRIEYDNHVKKTYVGFHRLEIVD-SLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
RGPDA + V +G RL+I+D S QPM + + L+ NG IYN++ L
Sbjct: 30 RGPDAGGVHAQGPVA---LGHRRLKIIDLSEASQQPM-VDPELGLALVFNGCIYNYREL 84
>gnl|CDD|218889 pfam06088, TLP-20, Nucleopolyhedrovirus telokin-like protein-20
(TLP20). This family consists of several
Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
sequences. The function of this family is unknown but
TLP20 is known to shares some antigenic similarities to
the smooth muscle protein telokin although the amino
acid sequence shows no homologies to telokin.
Length = 162
Score = 31.2 bits (71), Expect = 0.039
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 37 EYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGE---IYNF 83
EY H+KK VG + + ++DS LH T I G+ +YN
Sbjct: 33 EY--HLKKLGVGAYNVNVLDS---QLLDALHNNAHST-ITCGDYTVVYNL 76
>gnl|CDD|236384 PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional.
Length = 479
Score = 30.6 bits (70), Expect = 0.068
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 2 CGIWAIFGHETSNYLTSCE-HNFVKIQHRGPDAWRI-EYDNHVKKTYVGFHRLEIVDSLY 59
CG++ I GH + LT+ H +QHRG +A I +D + R+ +V +
Sbjct: 22 CGVFGILGHPDAAALTALGLH---ALQHRGQEAAGIVSFDGERFHSE---RRMGLVGDHF 75
Query: 60 GMQPMKLHRYP 70
+ R P
Sbjct: 76 T-DADVIARLP 85
>gnl|CDD|215241 PLN02440, PLN02440, amidophosphoribosyltransferase.
Length = 479
Score = 28.9 bits (65), Expect = 0.31
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 1 MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDA 33
CG+ IFG ++ L C +QHRG +
Sbjct: 1 ECGVVGIFGDPEASRL--CYLGLHALQHRGQEG 31
>gnl|CDD|181061 PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional.
Length = 475
Score = 28.6 bits (64), Expect = 0.41
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRG 30
CG++ I+GHE + +T + +QHRG
Sbjct: 12 CGVFGIWGHEEAAQITY--YGLHSLQHRG 38
>gnl|CDD|236427 PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.
Length = 501
Score = 28.2 bits (64), Expect = 0.58
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 12/38 (31%)
Query: 1 MCGIWAIFGHETSNY-----LTSCEHNFVKIQHRGPDA 33
MCGI I GH N LT +QHRG DA
Sbjct: 1 MCGIVGIVGHSPVNQSIYDALTV-------LQHRGQDA 31
>gnl|CDD|132422 TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase,
anaerobic, C subunit. Members of this protein family
are the membrane-anchoring, non-catalytic C subunit,
product of the glpC gene, of a three-subunit,
FAD-dependent, anaerobic glycerol-3-phosphate
dehydrogenase. GlpC lasks classical hydrophobic
transmembrane helices; Cole, et al suggest interaction
with the membrane may involve amphipathic helices. GlcC
has conserved Cys-containing motifs suggestive of
iron-sulfur binding. This complex is found mostly in
Escherichia coli and closely related species [Energy
metabolism, Anaerobic].
Length = 397
Score = 27.8 bits (62), Expect = 0.80
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 2 CGIWAIFGHETSNYLTS---CEHNFVKIQHRGPD---------AWRIEYDNHVK 43
CGI +G ++ NY TS + F +I+ G D W+IE ++
Sbjct: 331 CGIAGTYGFKSENYETSQAIGKSLFDQIEQSGADYVITDCETCKWQIEMSTSLE 384
>gnl|CDD|213365 cd12831, TmCorA-like_u2, Uncharacterized bacterial subfamily of
the Thermotoga maritima CorA-like family. This
subfamily belongs to the Thermotoga maritima CorA
(TmCorA)-like family of the MIT superfamily of
essential membrane proteins involved in transporting
divalent cations (uptake or efflux) across membranes.
Members of the TmCorA-like family are found in all
three kingdoms of life. It is a functionally diverse
family which includes the CorA Co2+ transporter from
the hyperthermophilic Thermotoga maritima, and three
Saccharomyces cerevisiae proteins: two located in the
plasma membrane: the Mg2+ transporter Alr1p/Swc3p and
the putative Mg2+ transporter, Alr2p, and the vacuole
membrane protein Mnr2p, a putative Mg2+ transporter.
Thermotoga maritima CorA forms funnel-shaped
homopentamers, the tip of the funnel is formed from two
C-terminal transmembrane (TM) helices from each
monomer, and the large opening of the funnel from the
N-terminal cytoplasmic domains. The GMN signature motif
of the MIT superfamily occurs just after TM1, mutation
within this motif is known to abolish Mg2+ transport by
a related protein, Saccharomyces cerevisiae Alr1p.
Natural variants in this signature sequence may be
associated with the transport of different divalent
cations. The functional diversity of the MIT
superfamily may also be due to minor structural
differences regulating gating, substrate selection, and
transport.
Length = 287
Score = 27.5 bits (62), Expect = 0.88
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 39 DNHVKKTYVGFHRLEIVDSLYGMQPMKLHRY 69
+ + ++ FH L I D L+ +Q KL Y
Sbjct: 14 EIKLLTSFFHFHPLAIEDCLHLLQRPKLDYY 44
>gnl|CDD|223112 COG0034, PurF, Glutamine phosphoribosylpyrophosphate
amidotransferase [Nucleotide transport and metabolism].
Length = 470
Score = 26.8 bits (60), Expect = 1.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 14/40 (35%)
Query: 1 MCGIWAIFGHETSN-----Y--LTSCEHNFVKIQHRGPDA 33
MCG++ I+GH+ +N Y L + +QHRG +A
Sbjct: 4 MCGVFGIWGHKDNNAAQLTYYGLYA-------LQHRGQEA 36
>gnl|CDD|235984 PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.
Length = 484
Score = 26.6 bits (59), Expect = 2.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 2 CGIWAIFGHETSNYLTSCE-HNFVKIQHRG 30
CG++ I+GH + LT H+ +QHRG
Sbjct: 12 CGVFGIWGHPDAAQLTYFGLHS---LQHRG 38
>gnl|CDD|213356 cd12822, TmCorA-like, Thermotoga maritima CorA-like family. This
family belongs to the MIT superfamily of essential
membrane proteins involved in transporting divalent
cations (uptake or efflux) across membranes. Members of
the Thermotoga maritima CorA_like family are found in
all three kingdoms of life. It is a functionally
diverse family, in addition to the CorA Co2+
transporter from the hyperthermophilic Thermotoga
maritima, it includes three Saccharomyces cerevisiae
members: two plasma membrane proteins, the Mg2+
transporter Alr1p/Swc3p and the putative Mg2+
transporter, Alr2p, and the vacuole membrane protein
Mnr2p, a putative Mg2+ transporter. Thermotoga maritima
CorA forms funnel-shaped homopentamers, the tip of the
funnel is formed from two C-terminal transmembrane (TM)
helices from each monomer, and the large opening of the
funnel from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just
after TM1, mutation within this motif is known to
abolish Mg2+ transport by Alr1p. Natural variants in
this signature sequence may be associated with the
transport of different divalent cations. The functional
diversity of the MIT superfamily may also be due to
minor structural differences regulating gating,
substrate selection, and transport.
Length = 289
Score = 26.0 bits (58), Expect = 2.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 48 GFHRLEIVDSLYGMQPMKLHRYP 70
GFH L I D+L Q K+ Y
Sbjct: 20 GFHPLAIEDALNERQRPKIEEYD 42
>gnl|CDD|239735 cd03766, Gn_AT_II_novel, Gn_AT_II_novel. This asparagine
synthase-related domain is present in eukaryotes but
its function has not yet been determined. The
glutaminase domain catalyzes an amide nitrogen transfer
from glutamine to the appropriate substrate. In this
process, glutamine is hydrolyzed to glutamic acid and
ammonia. This domain is related to members of the Ntn
(N-terminal nucleophile) hydrolase superfamily and is
found at the N-terminus of enzymes such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). GLMS catalyzes the formation of
glucosamine 6-phosphate from fructose 6-phosphate and
glutamine in amino sugar synthesis. GPATase catalyzes
the first step in purine biosynthesis, an amide
transfer from glutamine to PRPP, resulting in
phosphoribosylamine, pyrophosphate and glutamate.
Asparagine synthetase B synthesizes asparagine from
aspartate and glutamine. Beta-LS catalyzes the
formation of the beta-lactam ring in the beta-lactamase
inhibitor clavulanic acid. GltS synthesizes L-glutamate
from 2-oxoglutarate and L-glutamine. These enzymes are
generally dimers, but GPATase also exists as a
homotetramer.
Length = 181
Score = 25.7 bits (57), Expect = 3.7
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 18/92 (19%)
Query: 1 MCGIWAIFGHETSNYLTSCEHNF----VKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVD 56
MCGI S + +++RGPD Y + + + V L
Sbjct: 1 MCGILCSVS--PSGPHINSSLLSEELLPNLRNRGPD-----YLSTRQLS-VTNWTLLFTS 52
Query: 57 SLYGMQPMKLHRYP------RVTLICNGEIYN 82
S+ ++ + R P L NGE+YN
Sbjct: 53 SVLSLRGDHVTRQPLVDQSTGNVLQWNGELYN 84
>gnl|CDD|136048 PRK06781, PRK06781, amidophosphoribosyltransferase; Provisional.
Length = 471
Score = 25.7 bits (56), Expect = 4.1
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 2 CGIWAIFGHETSNYLTSCEHNFVKIQHRG 30
CG++ I+GHE + ++ + +QHRG
Sbjct: 12 CGVFGIWGHENAAQVSY--YGLHSLQHRG 38
>gnl|CDD|226471 COG3962, COG3962, Acetolactate synthase [Amino acid transport and
metabolism].
Length = 617
Score = 25.8 bits (57), Expect = 4.6
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 3 GIWAIFGH 10
G++AIFGH
Sbjct: 33 GVFAIFGH 40
>gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II.
Length = 223
Score = 25.4 bits (56), Expect = 4.6
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 3/25 (12%)
Query: 62 QPMKLHRYPRVTLICNGEIYNFKRL 86
P R L NGEI + L
Sbjct: 106 HPF---RREGWVLAHNGEINTLRGL 127
>gnl|CDD|232924 TIGR00334, 5S_RNA_mat_M5, ribonuclease M5. This family of
orthologous proteins shows a weak but significant
similarity to the central region of the DnaG-type DNA
primase. The region of similarity is termed the Toprim
(topoisomerase-primase) domain and is also shared by
RecR, OLD family nucleases, and type IA and II
topoisomerases [Transcription, RNA processing].
Length = 174
Score = 25.2 bits (55), Expect = 6.3
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 13 SNYLTSCEHNFVKIQHRGPDAWRIE 37
+L E+ F+ P+ +I
Sbjct: 68 EQHLPGYENCFIPKHLAKPNKKKIG 92
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 25.4 bits (55), Expect = 6.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 35 RIEYDNHVKKTYVGFHRLE 53
+ Y H+KK Y F RL+
Sbjct: 772 KARYKGHLKKNYFAFKRLD 790
>gnl|CDD|238367 cd00715, GPATase_N, Glutamine amidotransferases class-II
(GN-AT)_GPAT- type. This domain is found at the
N-terminus of glutamine phosphoribosylpyrophosphate
(Prpp) amidotransferase (GPATase) . The glutaminase
domain catalyzes amide nitrogen transfer from glutamine
to the appropriate substrate. In this process,
glutamine is hydrolyzed to glutamic acid and ammonia.
GPATase catalyzes the first step in purine
biosynthesis, an amide transfer from glutamine to PRPP,
resulting in phosphoribosylamine, pyrophosphate and
glutamate. GPATase crystalizes as a homotetramer, but
can also exist as a homdimer.
Length = 252
Score = 25.1 bits (56), Expect = 7.0
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 2 CGIWAIFGHETSNYLTSCEHNF--VKIQHRGPDA 33
CG++ I+G E + LT +QHRG ++
Sbjct: 1 CGVFGIYGAEDAARLT----YLGLYALQHRGQES 30
>gnl|CDD|237601 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 569
Score = 24.7 bits (54), Expect = 10.0
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 54 IVDSLYGMQ-PMKLHRYPRVTLICNGEIYNFKRLGV 88
I+ + G MKL + ++IC+ EI + K +G+
Sbjct: 246 IITNKNGKPLNMKLDINEKTSVICSNEILHKKLVGI 281
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.467
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,792,004
Number of extensions: 376742
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 33
Length of query: 95
Length of database: 10,937,602
Length adjustment: 62
Effective length of query: 33
Effective length of database: 8,187,654
Effective search space: 270192582
Effective search space used: 270192582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.0 bits)