RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15141
         (95 letters)



>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling,
          asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A
          {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
          Length = 553

 Score = 88.4 bits (219), Expect = 2e-22
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 1  MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYG 60
          + G++ I   +              ++HRGPD   I   ++     +   RL IVD   G
Sbjct: 3  IFGVFDIKT-DAVELRKKALELSRLMRHRGPDWSGIYASDNA---ILAHERLSIVDVNAG 58

Query: 61 MQPMKLHRYPRVTLICNGEIYNFKRL 86
           QP+   +     L  NGEIYN + L
Sbjct: 59 AQPLYNQQK-THVLAVNGEIYNHQAL 83


>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam
          synthetase, AS-B, class B asparagine synthetase,
          AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP:
          c.26.2.1 d.153.1.1 PDB: 1q19_A*
          Length = 503

 Score = 72.8 bits (179), Expect = 7e-17
 Identities = 10/86 (11%), Positives = 21/86 (24%), Gaps = 21/86 (24%)

Query: 1  MCGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYG 60
          M   + +    +           +    R  D              +  +    ++    
Sbjct: 1  MSNSFCVVYKGSDT--------DINNIQRDFDGKGE---------ALS-NGYLFIEQNGH 42

Query: 61 MQPMKLHRYPRVTLICNGEIYNFKRL 86
           Q  ++ R    T    G +YN   L
Sbjct: 43 YQKCEMERG---TAYLIGSLYNRTFL 65


>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC
          AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC
          CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1
          d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
          Length = 513

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 11/70 (15%), Positives = 16/70 (22%), Gaps = 12/70 (17%)

Query: 25 KIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVD--------SLYGMQPMKLHRYPRVTLIC 76
            +  GP          +     G   L                 + +        T + 
Sbjct: 20 GGRAPGPVFATRGSHTDIDTP-QGERSLAATLVHAPSVAPDRAVARSLTGAPT---TAVL 75

Query: 77 NGEIYNFKRL 86
           GEIYN   L
Sbjct: 76 AGEIYNRDEL 85


>3mdn_A Glutamine aminotransferase class-II domain protei; structural
          genomics, PSI-2, protein structure initiative; 2.09A
          {Ruegeria pomeroyi}
          Length = 274

 Score = 30.1 bits (67), Expect = 0.082
 Identities = 5/51 (9%), Positives = 15/51 (29%), Gaps = 10/51 (19%)

Query: 1  MCGIWAIFGHET--SNYLTSCEHNFVKIQHRG--------PDAWRIEYDNH 41
          +C   A  G      + ++   H+ +               D + + + + 
Sbjct: 3  LCRWAAYHGTPIFLEDVISRPGHSLIAQSAHAEECKTATNGDGFGVAWYDA 53


>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine
          biosynthesis, transferase, glycosyltransferase, gluta
          amidotransferase; HET: PIN; 2.00A {Escherichia coli}
          SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
          1ecj_A*
          Length = 504

 Score = 26.7 bits (60), Expect = 1.3
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 2  CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDA 33
          CGI  I G    N     +   V +QHRG DA
Sbjct: 1  CGIVGIAGVMPVNQSI-YDALTV-LQHRGQDA 30


>1tul_A TLP20; telokin-like protein; 2.20A {Autographa californica
          nucleopolyhedroorganism_taxid} SCOP: b.85.5.1
          Length = 108

 Score = 25.4 bits (55), Expect = 2.1
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 36 IEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICN--GEIYNF 83
          IE + ++KK  VG H +++  S    Q   L++    T+ C   G + N 
Sbjct: 29 IEDEYYLKKRGVGAHIIKVASS---PQLRLLYKNAYSTVSCGNYGVLCNL 75


>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase;
          HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A*
          2yl8_A* 3rpm_A*
          Length = 434

 Score = 24.5 bits (53), Expect = 7.2
 Identities = 5/40 (12%), Positives = 9/40 (22%)

Query: 32 DAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPR 71
          D  R   D+         +  + V           +  P 
Sbjct: 46 DGLRFMLDDMSITANGKTYASDDVKRAIEKGTNDYYNDPN 85


>2iub_A CORA, divalent cation transport-related protein; membrane protein,
           ION transporter; 2.9A {Thermotoga maritima} SCOP:
           d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
          Length = 363

 Score = 24.2 bits (53), Expect = 9.1
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 48  GFHRLEIVDSLYGMQPMKLHRYPRVTLIC 76
           G H L + D L   Q  K+  +     I 
Sbjct: 93  GIHPLVLEDILNVHQRPKVEFFENYVFIV 121


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.141    0.467 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,500,495
Number of extensions: 74207
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 13
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)