RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15141
         (95 letters)



>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase
          {Pectobacterium carotovorum [TaxId: 554]}
          Length = 204

 Score = 47.3 bits (112), Expect = 2e-08
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 26 IQHRGPDAWRIEYDNHVKKTY-VGFHRLEIVD-SLYGMQPMKLHRYPRVTLICNGEIYNF 83
          + ++G D       N++++ +      L      +      +     R T    G +YN 
Sbjct: 6  VVYKGSD----TDINNIQRDFDGKGEALSNGYLFIEQNGHYQKCEMERGTAYLIGSLYNR 61

Query: 84 KRL 86
            L
Sbjct: 62 TFL 64


>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces
          clavuligerus [TaxId: 1901]}
          Length = 206

 Score = 42.8 bits (100), Expect = 9e-07
 Identities = 10/59 (16%), Positives = 14/59 (23%), Gaps = 7/59 (11%)

Query: 28 HRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEIYNFKRL 86
          H   D  +              H   +       +          T +  GEIYN   L
Sbjct: 31 HTDIDTPQ----GERSLAATLVHAPSVAPDRAVARS---LTGAPTTAVLAGEIYNRDEL 82


>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal
          domain {Escherichia coli [TaxId: 562]}
          Length = 192

 Score = 33.0 bits (74), Expect = 0.003
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 25 KIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGEIYNF 83
           ++HRGPD   I   ++     +   RL IVD          ++     L  NGEIYN 
Sbjct: 26 LMRHRGPDWSGIYASDNA---ILAHERLSIVDV-NAGAQPLYNQQKTHVLAVNGEIYNH 80


>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase,
          N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 238

 Score = 29.0 bits (64), Expect = 0.072
 Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 2/66 (3%)

Query: 2  CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRIEYDNHVKKTYVGFHRLEIVDSLYGM 61
          CGI           +        ++++RG D+  +   +            ++       
Sbjct: 1  CGIVGAIAQRDVAEILL--EGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAA 58

Query: 62 QPMKLH 67
          +   LH
Sbjct: 59 EEHPLH 64


>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase,
          N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 249

 Score = 26.7 bits (58), Expect = 0.38
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 2  CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRI 36
          CGI  I G    N           +QHRG DA  I
Sbjct: 1  CGIVGIAGVMPVNQSIY--DALTVLQHRGQDAAGI 33


>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase,
          N-terminal domain {Bacillus subtilis [TaxId: 1423]}
          Length = 234

 Score = 26.1 bits (56), Expect = 0.66
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 2  CGIWAIFGHETSNYLTSCEHNFVKIQHRGPDAWRI 36
          CG++ I+GHE +  +T   +    +QHRG +   I
Sbjct: 1  CGVFGIWGHEEAPQIT--YYGLHSLQHRGQEGAGI 33


>d1tula_ b.85.5.1 (A:) Tlp20, baculovirus telokin-like protein
          {AcMNPV (Autographa californica nuclear polyhedrosis
          virus) [TaxId: 46015]}
          Length = 102

 Score = 25.1 bits (55), Expect = 1.0
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 10/59 (16%)

Query: 37 EYDNHVKKTYVGFHRLEIVDSLYGMQPMKLHRYPRVTLICNGE--IYNF---KRLGVQV 90
          EY  ++KK  VG H +++  S    Q   L++    T+ C     + N        +  
Sbjct: 26 EY--YLKKRGVGAHIIKVASS---PQLRLLYKNAYSTVSCGNYGVLCNLVQNGEYDLNA 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.467 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 384,594
Number of extensions: 15751
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 12
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)