BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15142
(744 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
Length = 94
Score = 99.4 bits (246), Expect = 6e-21, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET 308
+ M DMQQ A+D + +EK+NIE+++A YIK+ F+ Y P W C+VGRNFGSYV+ ET
Sbjct: 16 ADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHET 75
Query: 309 -HYIYFYLGKV 318
H+IYFYLG+V
Sbjct: 76 KHFIYFYLGQV 86
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 99.4 bits (246), Expect = 6e-21, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET 308
+ M DMQQ A+D + +EK+NIE+++A YIK+ F+ Y P W C+VGRNFGSYV+ ET
Sbjct: 11 ADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHET 70
Query: 309 -HYIYFYLGKV 318
H+IYFYLG+V
Sbjct: 71 KHFIYFYLGQV 81
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 99.4 bits (246), Expect = 6e-21, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET 308
+ M DMQQ A+D + +EK+NIE+++A YIK+ F+ Y P W C+VGRNFGSYV+ ET
Sbjct: 14 ADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHET 73
Query: 309 -HYIYFYLGKV 318
H+IYFYLG+V
Sbjct: 74 KHFIYFYLGQV 84
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET 308
+ M +MQQ A+D + LEK+NIE+++A YIK+ F+ Y P W C+VGRNFGSYV+ ET
Sbjct: 11 ADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHET 70
Query: 309 -HYIYFYLGKV 318
H+IYFYLG+V
Sbjct: 71 RHFIYFYLGQV 81
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET 308
+ M +MQQ A+D + LEK+NIE+++A YIK+ F+ Y P W C+VGRNFGSYV+ ET
Sbjct: 13 ADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHET 72
Query: 309 -HYIYFYLGKV 318
H+IYFYLG+V
Sbjct: 73 RHFIYFYLGQV 83
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein
Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET 308
+ M +MQQ A+D + LEK+NIE+++A YIK+ F+ Y P W C+VGRNFGSYV+ ET
Sbjct: 11 ADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHET 70
Query: 309 -HYIYFYLGKV 318
H+IYFYLG+V
Sbjct: 71 RHFIYFYLGQV 81
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 96.7 bits (239), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Query: 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET 308
+ M +MQQ A+D + LEK+NIE ++A YIK+ F+ Y P W C+VGRNFGSYV+ ET
Sbjct: 13 ADMSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHET 72
Query: 309 -HYIYFYLGKV 318
H+IYFYLG+V
Sbjct: 73 RHFIYFYLGQV 83
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 94.7 bits (234), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET 308
+ M D+QQ AID + LEK+NIE+++A +IK+ F+ + P W CVVGRNFGSYV+ ET
Sbjct: 11 ADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHET 70
Query: 309 -HYIYFYLGKV 318
H+IYFY+G+V
Sbjct: 71 HHFIYFYIGQV 81
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGR--NFGSYVSF 306
+ M DMQQ A+D + +EK+NIE+++A YIK+ F+ Y P W C+VGR NFGSYV+
Sbjct: 11 ADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRSGNFGSYVTH 70
Query: 307 ET-HYIYFYLGKV 318
ET H+IYFYLG+V
Sbjct: 71 ETKHFIYFYLGQV 83
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
Length = 89
Score = 93.2 bits (230), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET 308
+ M +MQQ +++ + LEK+NIE+++A +IK+ F+ Y P W C+VGRNFGSYV+ ET
Sbjct: 11 ADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHET 70
Query: 309 -HYIYFYLGKV 318
H+IYFYLG+V
Sbjct: 71 KHFIYFYLGQV 81
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 93.2 bits (230), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET 308
+ M +MQQ +++ + LEK+NIE+++A +IK+ F+ Y P W C+VGRNFGSYV+ ET
Sbjct: 7 ADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHET 66
Query: 309 -HYIYFYLGKV 318
H+IYFYLG+V
Sbjct: 67 KHFIYFYLGQV 77
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 251 MDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET-H 309
M +MQ AID + L+K+N+E+++A +IK+ F+ Y P W CVVGRNFGSYV+ ET +
Sbjct: 26 MTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKN 85
Query: 310 YIYFYLGKV 318
+IYFY+G+V
Sbjct: 86 FIYFYIGQV 94
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET 308
S + +++ + +K+ L+K+ +ER++A +K+ + YG W +VG+NFGSYV+ E
Sbjct: 19 SDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEK 78
Query: 309 -HYIYFYLGKVKHINWTVA 326
H++YFY+G + + + A
Sbjct: 79 GHFVYFYIGPLAFLVFKTA 97
>pdb|1DL7|H Chain H, The Structural Basis Of Repertoire Shift In An Immune
Response To Phosphocholine
Length = 112
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 191 VTATMALCLGVAFSGFAISGYNVNHLDIAPRYASILMGMSNGIGTIDIFISYIGRRGKST 250
V + +L + SGF+++GY VN + P +GM G G+ D + S + R +
Sbjct: 12 VAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGSTD-YNSALKSRLNIS 70
Query: 251 MDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYW 292
D Q L ++++ + + Y YGPYW
Sbjct: 71 KDKSKSQVF-------LRMYSLQTDDTA--RYYCARDYGPYW 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,530,732
Number of Sequences: 62578
Number of extensions: 982435
Number of successful extensions: 2590
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2562
Number of HSP's gapped (non-prelim): 14
length of query: 744
length of database: 14,973,337
effective HSP length: 106
effective length of query: 638
effective length of database: 8,340,069
effective search space: 5320964022
effective search space used: 5320964022
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)