Query psy15142
Match_columns 744
No_of_seqs 702 out of 5044
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 21:42:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 1.8E-27 6.2E-32 263.5 22.7 260 318-580 55-321 (451)
2 3o7q_A L-fucose-proton symport 99.9 6.7E-26 2.3E-30 249.9 28.6 269 317-613 52-349 (438)
3 4gc0_A D-xylose-proton symport 99.9 4.6E-25 1.6E-29 247.2 26.2 343 129-485 57-476 (491)
4 4gc0_A D-xylose-proton symport 99.9 7.8E-24 2.7E-28 237.2 23.5 253 324-580 53-343 (491)
5 4aps_A DI-OR tripeptide H+ sym 99.9 4.4E-23 1.5E-27 231.2 25.8 260 320-581 48-351 (491)
6 1pw4_A Glycerol-3-phosphate tr 99.9 2.1E-24 7.3E-29 238.8 13.1 328 128-467 63-433 (451)
7 2gfp_A EMRD, multidrug resista 99.9 4.5E-24 1.6E-28 230.4 14.0 239 318-579 27-265 (375)
8 3o7q_A L-fucose-proton symport 99.9 2.3E-23 7.8E-28 229.7 18.5 321 123-461 56-426 (438)
9 4aps_A DI-OR tripeptide H+ sym 99.9 2E-22 6.8E-27 225.8 13.7 336 123-471 49-475 (491)
10 2cfq_A Lactose permease; trans 99.8 2.5E-20 8.5E-25 204.2 15.9 250 317-580 34-290 (417)
11 2cfq_A Lactose permease; trans 99.8 5.1E-21 1.7E-25 209.7 1.1 336 122-472 37-404 (417)
12 2xut_A Proton/peptide symporte 99.8 6.6E-19 2.2E-23 198.9 15.5 147 318-466 40-197 (524)
13 2gfp_A EMRD, multidrug resista 99.8 3.2E-21 1.1E-25 208.0 -3.5 315 123-453 30-362 (375)
14 2xut_A Proton/peptide symporte 99.7 7.9E-19 2.7E-23 198.2 8.3 336 125-471 51-506 (524)
15 1yo3_A Dynein light chain 1; s 75.9 2.6 9E-05 34.6 4.1 67 248-314 23-90 (102)
16 3rjs_A Dynein light chain moto 74.8 2.6 8.8E-05 33.8 3.7 65 249-313 11-76 (89)
17 4ds1_A Dynein light chain 1, c 71.5 2.8 9.7E-05 34.1 3.3 66 249-314 19-85 (97)
18 1qp6_A Protein (alpha2D); de n 61.9 1.5 5.2E-05 26.2 -0.1 25 3-27 5-33 (35)
19 1m3w_A H10H24; four-helix bund 39.8 13 0.00044 21.8 1.4 15 9-24 4-18 (32)
20 3a9f_A Cytochrome C; alpha hel 36.9 21 0.00071 28.6 2.7 31 7-37 56-86 (92)
21 2g9p_A Antimicrobial peptide l 20.2 33 0.0011 19.1 0.7 14 345-358 2-15 (26)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=1.8e-27 Score=263.53 Aligned_cols=260 Identities=14% Similarity=0.125 Sum_probs=214.0
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhhhhhHHhhhccCCchhhHHHHHHHHHHHHHHHHHh----hcChHHHHHHHHHHhh
Q psy15142 318 VKHINWTVAQESAVDSSFFWGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVPTAI----KLNPGSVIIVRICQGL 393 (744)
Q Consensus 318 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~G~ 393 (744)
.+++ .+..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++ .++ +++++.++++|++.|+
T Consensus 55 ~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~l~G~ 131 (451)
T 1pw4_A 55 VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF--MGFVPWATSSIAVMFVLLFLCGW 131 (451)
T ss_dssp TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH--HHHCHHHHSSSSHHHHHHHHHHH
T ss_pred HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH--HHhhhhccccHHHHHHHHHHHHH
Confidence 4667 89999999999999999999999999999999999999999999999988 567 8899999999999999
Q ss_pred hhhhhhhHHhHHhhhccCccchhHHHHHHHHHhhhHHHhhHHHHHHhhhccC-chhHHHHHHHHHHHHHHHHHhhcccCC
Q psy15142 394 VEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAILTEHFS-WEAMFYFYGCMGLLWYLCWLWLSFEKP 472 (744)
Q Consensus 394 ~~~~~~~~~~~~~~e~~p~~~Rg~~~g~~~~~~~~g~~ig~~i~~~l~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~e~p 472 (744)
+.+...+...++++|++|+++|++++++.+.+..+|..++|.+++.+.+.+| ||+.|++.+++.++..++.+++.||+|
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 132 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 9999999999999999999999999999999999999999999999888888 999999999988887777767778877
Q ss_pred CCCCCCChHHHHHHHHhhcccccccCCCCCCCcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH
Q psy15142 473 CLHPTISGRELLYIEKSLGSSVQVAMPTLATTPWREFAHSMPVYAIIVANFCRSWNFYLLVLFQASYLKSTFHLQIQETG 552 (744)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~ 552 (744)
++....+.++.+............+........+++++++|.++...+..++.....+.+..++|.|+++.+|+++.+++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 291 (451)
T 1pw4_A 212 QSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS 291 (451)
T ss_dssp TTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHH
T ss_pred hhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 65332211110000000000000000001111246778899999999999999999999999999999987899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHh--hhcC
Q psy15142 553 FIGSLPHLLMTIVVPCGGMLADHL--RKKG 580 (744)
Q Consensus 553 ~~~~~~~~~~~i~~~~~g~l~dr~--g~r~ 580 (744)
++.++..++.+++.++.|++.||+ ++|+
T Consensus 292 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 321 (451)
T 1pw4_A 292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 321 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 999999999999999999999999 7763
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=6.7e-26 Score=249.95 Aligned_cols=269 Identities=12% Similarity=0.042 Sum_probs=217.9
Q ss_pred cccccccCchhhHHHHHHHHHHHHHhhhhhHHhhhccCCchhhHHHHHHHHHHHHHHHH-HhhcChHHHHHHHHHHhhhh
Q psy15142 317 KVKHINWTVAQESAVDSSFFWGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVPT-AIKLNPGSVIIVRICQGLVE 395 (744)
Q Consensus 317 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~G~~~ 395 (744)
..+++|++..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.++... ..+++++.+++.|++.|++.
T Consensus 52 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~ 131 (438)
T 3o7q_A 52 FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGL 131 (438)
T ss_dssp HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhH
Confidence 35789999999999999999999999999999999999999999999999999887211 67789999999999999999
Q ss_pred hhhhhHHhHHhhhccCccchhHHHHHHHHHhhhHHHhhHHHHHHhh-hccC-------------------------chhH
Q psy15142 396 GVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAILT-EHFS-------------------------WEAM 449 (744)
Q Consensus 396 ~~~~~~~~~~~~e~~p~~~Rg~~~g~~~~~~~~g~~ig~~i~~~l~-~~~g-------------------------w~~~ 449 (744)
+...+...++++|++|+++|++++++.+.+..+|..++|.+++.+. +..+ ||+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 211 (438)
T 3o7q_A 132 GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTP 211 (438)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHH
Confidence 9999999999999999999999999999999999999999999988 5554 8999
Q ss_pred HHHHHHHHHHHHHHHHhh-cccCCCCCCCCChHHHHHHHHhhcccccccCCCCCCCcHHHHhhcHHHHHHHHHHHHHHHH
Q psy15142 450 FYFYGCMGLLWYLCWLWL-SFEKPCLHPTISGRELLYIEKSLGSSVQVAMPTLATTPWREFAHSMPVYAIIVANFCRSWN 528 (744)
Q Consensus 450 f~~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 528 (744)
|++.+++.++..++.++. .||++++.+.. ++......++++++++|.++...+..++....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T 3o7q_A 212 YMIIVAIVLLVALLIMLTKFPALQSDNHSD------------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGA 273 (438)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCTTTCCCC------------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccc------------------ccccchhhhHHHHHhChHHHHHHHHHHHHHHH
Confidence 988877766665554433 23332211000 00111123577889999999988888888888
Q ss_pred HHHHHHHHHHH-HHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCccchhhHHHHHHHHhHHHHHHHHHHHh
Q psy15142 529 FYLLVLFQASY-LKSTFHLQIQETGFIGSLPHLLMTIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFFVVVA 607 (744)
Q Consensus 529 ~~~~~~~~p~~-l~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 607 (744)
...+..++|.| +++.+|+++.+++.+.++..++.+++.++.|+++||+++|+ ....+.++..+++++..
T Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~----------~~~~~~~~~~~~~~~~~ 343 (438)
T 3o7q_A 274 QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK----------VLAAYALIAMALCLISA 343 (438)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----------HHHHHHHHHHHHHHHHH
Confidence 88999999999 88877999999999999999999999999999999999874 33333444444454455
Q ss_pred ccCchH
Q psy15142 608 YTKSEV 613 (744)
Q Consensus 608 ~~~~~~ 613 (744)
+.++.+
T Consensus 344 ~~~~~~ 349 (438)
T 3o7q_A 344 FAGGHV 349 (438)
T ss_dssp HCCHHH
T ss_pred HcCCcH
Confidence 444443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.93 E-value=4.6e-25 Score=247.21 Aligned_cols=343 Identities=12% Similarity=-0.039 Sum_probs=228.3
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhCCcccchhhhhHHhhhhhHHHHHHHHHHh------------------cCCh
Q psy15142 129 TGFIGSLPHLLMTIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFFVVVAY------------------TKSE 190 (744)
Q Consensus 129 ~g~~~~~~~~~~~~g~~~~G~lsDr~~~r~~l~~~~gRk~~~~~~~~~~~~~~~~~~~------------------~~~~ 190 (744)
.|++.+++++|..+|++++|+++||+ |||+.++++++++.++.+++++ ++|.
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~----------GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~ 126 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRF----------GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYV 126 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHT----------CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhH
Confidence 38999999999999999999999999 8999999999999999999884 7789
Q ss_pred hHHHHHHHHHHHhhhcccccccccccccCcc-hhhHHHHHHhhhhhhhhHHHhhhccCCc--------------------
Q psy15142 191 VTATMALCLGVAFSGFAISGYNVNHLDIAPR-YASILMGMSNGIGTIDIFISYIGRRGKS-------------------- 249 (744)
Q Consensus 191 ~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~-~rg~~~g~~~~~~~~g~~~~~~~~~~~~-------------------- 249 (744)
++++++|++.|++.|...+...++++|++|+ +||+..++.+.+..+|.++++.+.....
T Consensus 127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4gc0_A 127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASE 206 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhh
Confidence 9999999999999999999999999999985 6999999999998888777655432211
Q ss_pred ---------------ccchhhHHHh-HhhhHhhhhhhchhhHH-------HHHHHHh------hhhcCCCcceehhhhhh
Q psy15142 250 ---------------TMDADMQQKA-IDATKEGLEKFNIEREV-------ATYIKQY------FENAYGPYWQCVVGRNF 300 (744)
Q Consensus 250 ---------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~~~~~ 300 (744)
+.+.+..... .++..+.+++...+... .....+. ......++........+
T Consensus 207 ~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (491)
T 4gc0_A 207 CIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSI 286 (491)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHH
Confidence 1111110000 00011111111000000 0000000 00111111222222222
Q ss_pred cccccchhhheeeecccccccccCchhhHHHHHHHHHHHHHhhhhhHHhhhccCCchhhHHHHHHHHHHHHHHHHHhhc-
Q psy15142 301 GSYVSFETHYIYFYLGKVKHINWTVAQESAVDSSFFWGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVPTAIKL- 379 (744)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~- 379 (744)
...........++.....+..+.+.........+..+...++.++++++.||+|||+.++.+...++++.+.+......
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~ 366 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ 366 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc
Confidence 2222222222222222234556666666667777788888999999999999999999999888877776653222221
Q ss_pred -ChHHHHHH-HHHHhhhhhhhhhHHhHHhhhccCccchhHHHHHHHHHhhhHHHhhHHHHHHhhh------ccCchhHHH
Q psy15142 380 -NPGSVIIV-RICQGLVEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAILTE------HFSWEAMFY 451 (744)
Q Consensus 380 -~~~~~~~~-~~l~G~~~~~~~~~~~~~~~e~~p~~~Rg~~~g~~~~~~~~g~~ig~~i~~~l~~------~~gw~~~f~ 451 (744)
+....++. .++.+....+..++.+.+.+|.+|++.|++++|+....+++|+.+++.+.+.+.+ ..++...|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~ 446 (491)
T 4gc0_A 367 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYW 446 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 22222222 2222222334557788999999999999999999999999999999988776643 346777888
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCChHHHHH
Q psy15142 452 FYGCMGLLWYLCWLWLSFEKPCLHPTISGRELLY 485 (744)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~ 485 (744)
+.++++++..++.+++.|||. .++.||.++
T Consensus 447 i~~~~~~~~~i~~~~~~PETk----g~tLeei~~ 476 (491)
T 4gc0_A 447 IYGCMGVLAALFMWKFVPETK----GKTLEELEA 476 (491)
T ss_dssp HHHHHHHHHHHHHHHHCCCCT----TCCHHHHGG
T ss_pred HHHHHHHHHHHHHHheecCCC----CCCHHHHHH
Confidence 888888888888888889874 345666543
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.92 E-value=7.8e-24 Score=237.22 Aligned_cols=253 Identities=13% Similarity=0.101 Sum_probs=185.2
Q ss_pred CchhhHHHHHHHHHHHHHhhhhhHHhhhccCCchhhHHHHHHHHHHHHHHHHH------------------hhcChHHHH
Q psy15142 324 TVAQESAVDSSFFWGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVPTA------------------IKLNPGSVI 385 (744)
Q Consensus 324 s~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 385 (744)
+....|++.+++.+|.++|++++|+++||+|||++++++.+++.++.++ .+ .++++++++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~--~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVG--SAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--HHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--HHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 4456789999999999999999999999999999999999999999887 44 477899999
Q ss_pred HHHHHHhhhhhhhhhHHhHHhhhccCccchhHHHHHHHHHhhhHHHhhHHHHHHhhhc--------cCchhHHHHHHHHH
Q psy15142 386 IVRICQGLVEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAILTEH--------FSWEAMFYFYGCMG 457 (744)
Q Consensus 386 ~~~~l~G~~~~~~~~~~~~~~~e~~p~~~Rg~~~g~~~~~~~~g~~ig~~i~~~l~~~--------~gw~~~f~~~~~~~ 457 (744)
++|+++|++.|+..+...++++|+.|+++|++..++.+.+..+|..+++.++..+... .+|+..+.+..+..
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999888776543 34677776666666
Q ss_pred HHHHHHHHhhcccCCCCCCCCC-hHHH-HHHHHhhcccccc---------cCCCCCCCcHHHHhhcHHH-HHHHHHHHHH
Q psy15142 458 LLWYLCWLWLSFEKPCLHPTIS-GREL-LYIEKSLGSSVQV---------AMPTLATTPWREFAHSMPV-YAIIVANFCR 525 (744)
Q Consensus 458 ~~~~~~~~~~~~e~p~~~~~~~-~~~~-~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~ 525 (744)
++..+.. ++.||+|++..... .++. +.+++...+.... .....+.......++.+.. .......+.+
T Consensus 211 ~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (491)
T 4gc0_A 211 LLFLMLL-YTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQ 289 (491)
T ss_dssp HHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHH
T ss_pred hhhhhhh-hcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHH
Confidence 5554444 45699987632221 1221 1111111000000 0000001112223333333 3445555566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q psy15142 526 SWNFYLLVLFQASYLKSTFHLQIQETGFIGSLPHLLMTIVVPCGGMLADHLRKKG 580 (744)
Q Consensus 526 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~ 580 (744)
..+.+.+..|.|.+.+. .+.+.........+..+...++.++++++.||+|||+
T Consensus 290 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~ 343 (491)
T 4gc0_A 290 FVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP 343 (491)
T ss_dssp HTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHH
T ss_pred HhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 66777778888887776 6777777777788888999999999999999999985
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.91 E-value=4.4e-23 Score=231.17 Aligned_cols=260 Identities=13% Similarity=0.051 Sum_probs=191.6
Q ss_pred ccccCchhhHHHHHHHHHHHHHhhhhhHHhhhc-cCCchhhHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhhh
Q psy15142 320 HINWTVAQESAVDSSFFWGYLITQVPGGFFASR-YPANRIFGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQGLVEGVC 398 (744)
Q Consensus 320 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~ 398 (744)
++|++..+.+++.+++.++..++++++|+++|| +|||+++..+.++.+++.++ .+++++.+.++++|++.|++.+..
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV--LALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH--HHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHhc
Confidence 389999999999999999999999999999999 89999999999999999888 678889999999999999999999
Q ss_pred hhHHhHHhhhccCccc--hhHHHHHHHHHhhhHHHhhHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHhhcccCCCCC-
Q psy15142 399 YPAVHGIWRFWAPPLE--RSRLATIAFCGTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLWLSFEKPCLH- 475 (744)
Q Consensus 399 ~~~~~~~~~e~~p~~~--Rg~~~g~~~~~~~~g~~ig~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~e~p~~~- 475 (744)
.+...++++|++|+++ |+.++++++.+..+|..++|.+++.+.+..||++.|++.++..++..++.++..++..++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY 205 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 9999999999999988 7788888999999999999999999999999999999988777766665554434322111
Q ss_pred ----CCCChHHHHHHHHh----------------hcccccccC--------------------CCCCCCcHHHHhhcHHH
Q psy15142 476 ----PTISGRELLYIEKS----------------LGSSVQVAM--------------------PTLATTPWREFAHSMPV 515 (744)
Q Consensus 476 ----~~~~~~~~~~~~~~----------------~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~ 515 (744)
...+.++.+...+. ..+...... .+.......+..+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (491)
T 4aps_A 206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSY 285 (491)
T ss_dssp SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTH
T ss_pred cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 11122222221111 000000000 00000000111122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCc
Q psy15142 516 YAIIVANFCRSWNFYLLVLFQASYLKSTFHLQIQETGFIGSLPHLLMTIVVPCGGMLADHLRKKGI 581 (744)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~ 581 (744)
+.+.+..+.....+.....++|.|+++..+.+....+.+..+..++.+++.++.+++.||++||+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~ 351 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP 351 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC
Confidence 444545555566666677788889988777776778888888899999999999999999999853
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.91 E-value=2.1e-24 Score=238.76 Aligned_cols=328 Identities=13% Similarity=0.000 Sum_probs=237.4
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHhCCcccchhhhhHHhhhhhHHHHHHHHHHh----cCChhHHHHHHHHHHHh
Q psy15142 128 RTGFIGSLPHLLMTIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFFVVVAY----TKSEVTATMALCLGVAF 203 (744)
Q Consensus 128 ~~g~~~~~~~~~~~~g~~~~G~lsDr~~~r~~l~~~~gRk~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 203 (744)
+.|++.+++.++..++++++|+++||+ |||++++++.++.+++.+++++ +++++.++++|++.|++
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~G~l~dr~----------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 132 (451)
T 1pw4_A 63 DLGFALSGISIAYGFSKFIMGSVSDRS----------NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWF 132 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS----------CHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhc----------CchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHH
Confidence 349999999999999999999999999 7888999999999999999999 99999999999999999
Q ss_pred hhcccccccccccccCc-chhhHHHHHHhhhhhhhhHHHhhhccCCcccch-hh---HHHh-Hhh-----hHhhh-hhhc
Q psy15142 204 SGFAISGYNVNHLDIAP-RYASILMGMSNGIGTIDIFISYIGRRGKSTMDA-DM---QQKA-IDA-----TKEGL-EKFN 271 (744)
Q Consensus 204 ~g~~~~~~~~~~~e~~p-~~rg~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~---~~~~-~~~-----~~~~~-~~~~ 271 (744)
.+...+...+++.|+.| ++|++++|+.+.+.++|.++++.+......... +. .... ... ..... +...
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 133 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 99999999999999998 579999999999999998888665422111000 10 0000 000 00000 0000
Q ss_pred h-------h--h--------HH--HHHHHHh-hhhcCC-CcceehhhhhhcccccchhhheeeecccccccccCchhhHH
Q psy15142 272 I-------E--R--------EV--ATYIKQY-FENAYG-PYWQCVVGRNFGSYVSFETHYIYFYLGKVKHINWTVAQESA 330 (744)
Q Consensus 272 ~-------~--~--------~~--~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 330 (744)
. + + +. ....++. .....+ +.........+...........+...+..+.+|++..+.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 292 (451)
T 1pw4_A 213 SCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSW 292 (451)
T ss_dssp TTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHH
T ss_pred hcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 0 0 0 00 0000000 001111 11111111112222222222222223334558999999999
Q ss_pred HHHHHHHHHHHhhhhhHHhhhcc--CCchhhHHHHHHHH-HHHHHHHHHhh--cChHHHHHHHHHHhhhhhhhhhHHhHH
Q psy15142 331 VDSSFFWGYLITQVPGGFFASRY--PANRIFGTAIACTS-FLHLFVPTAIK--LNPGSVIIVRICQGLVEGVCYPAVHGI 405 (744)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~l~Dr~--Grr~~l~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~ 405 (744)
+.++..++..++.++.|+++||+ |||+.+..+.++.. ++.++ .... .+.+.+.+..++.|++.+...+...++
T Consensus 293 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 370 (451)
T 1pw4_A 293 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV--YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH 370 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH--TTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH--HHHhcccCHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 99999999999999999999999 99999888877766 55544 3333 366677778888999888888889999
Q ss_pred hhhccCccchhHHHHHHHHHhhh-HHHhhHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHhh
Q psy15142 406 WRFWAPPLERSRLATIAFCGTYA-GIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLWL 467 (744)
Q Consensus 406 ~~e~~p~~~Rg~~~g~~~~~~~~-g~~ig~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 467 (744)
+.|.+|++.|+++.|+.+....+ |..++|.+.|.+.+..||+..|++.+++.++..++.++.
T Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 371 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999999888887776666554
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=4.5e-24 Score=230.38 Aligned_cols=239 Identities=11% Similarity=0.062 Sum_probs=210.2
Q ss_pred ccccccCchhhHHHHHHHHHHHHHhhhhhHHhhhccCCchhhHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhh
Q psy15142 318 VKHINWTVAQESAVDSSFFWGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQGLVEGV 397 (744)
Q Consensus 318 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~ 397 (744)
.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++ ...+++++.+++.|++.|++.+.
T Consensus 27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~l~g~~~~~ 104 (375)
T 2gfp_A 27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV--AVTTSSLTVLIAASAMQGMGTGV 104 (375)
T ss_dssp HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH--HHHhccHHHHHHHHHHHHHHHHh
Confidence 5778999999999999999999999999999999999999999999999999888 56778999999999999999999
Q ss_pred hhhHHhHHhhhccCccchhHHHHHHHHHhhhHHHhhHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q psy15142 398 CYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLWLSFEKPCLHPT 477 (744)
Q Consensus 398 ~~~~~~~~~~e~~p~~~Rg~~~g~~~~~~~~g~~ig~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~e~p~~~~~ 477 (744)
..+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..||++.|++.+++.++..++..+..||++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (375)
T 2gfp_A 105 GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP 184 (375)
T ss_dssp HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC
T ss_pred hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc
Confidence 99999999999999999999999999999999999999999999988999999998888777766455555766543211
Q ss_pred CChHHHHHHHHhhcccccccCCCCCCCcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH
Q psy15142 478 ISGRELLYIEKSLGSSVQVAMPTLATTPWREFAHSMPVYAIIVANFCRSWNFYLLVLFQASYLKSTFHLQIQETGFIGSL 557 (744)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~ 557 (744)
. +....++++++++|.++...+..++.......+..+.|.|+++.+|+++.+.+.+.+.
T Consensus 185 ~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 243 (375)
T 2gfp_A 185 R---------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFIL 243 (375)
T ss_dssp C---------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHT
T ss_pred c---------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 0 0123346678899999988888888888999999999999988789999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHhhhc
Q psy15142 558 PHLLMTIVVPCGGMLADHLRKK 579 (744)
Q Consensus 558 ~~~~~~i~~~~~g~l~dr~g~r 579 (744)
..++.+++.++.+++.||.+++
T Consensus 244 ~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 244 PIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999863
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.90 E-value=2.3e-23 Score=229.67 Aligned_cols=321 Identities=11% Similarity=0.026 Sum_probs=232.6
Q ss_pred hccccc-ccccccchHHHHHHHHHHHHHHHHHHHHhCCcccchhhhhHHhhhhhHHHHHHHHH---HhcCChhHHHHHHH
Q psy15142 123 LQFEGR-TGFIGSLPHLLMTIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFFVVV---AYTKSEVTATMALC 198 (744)
Q Consensus 123 ~~~~~~-~g~~~~~~~~~~~~g~~~~G~lsDr~~~r~~l~~~~gRk~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 198 (744)
++.+.. .|++.+++.++..++.+++|+++||+ |||+.+++++++.+++.+++ +++++++.+++.|+
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~----------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (438)
T 3o7q_A 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL----------SYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF 125 (438)
T ss_dssp SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS----------CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh----------cchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 444443 49999999999999999999999999 78889999999999999999 88899999999999
Q ss_pred HHHHhhhcccccccccccccCcc-hhhHHHHHHhhhhhhhhHHHhhhccCCc-ccchh-----------------h----
Q psy15142 199 LGVAFSGFAISGYNVNHLDIAPR-YASILMGMSNGIGTIDIFISYIGRRGKS-TMDAD-----------------M---- 255 (744)
Q Consensus 199 ~~~~~~g~~~~~~~~~~~e~~p~-~rg~~~g~~~~~~~~g~~~~~~~~~~~~-~~~~~-----------------~---- 255 (744)
+.|++.|...+...++++|+.|+ +|++.+|+.+.+.++|.++++.+..... ..... .
T Consensus 126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (438)
T 3o7q_A 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLV 205 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhh
Confidence 99999999999999999999985 6999999999999999999987544332 21110 0
Q ss_pred --HHHhHhh------hH---hhh----hhhc------hhhHHHHHHHHhhhhcCCCcceehhhhhhcccccchhhheeee
Q psy15142 256 --QQKAIDA------TK---EGL----EKFN------IEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFETHYIYFY 314 (744)
Q Consensus 256 --~~~~~~~------~~---~~~----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (744)
++..... .. -.. +... .+.......++.+++ +..+...+.. +...........+..
T Consensus 206 ~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~ 282 (438)
T 3o7q_A 206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARI--RHWRWAVLAQ-FCYVGAQTACWSYLI 282 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTC--SHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhC--hHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 1111100 00 000 0000 001112223333321 1122222222 222222222222222
Q ss_pred cc-cccccccCchhhHHHHHHHHHHHHHhhhhhHHhhhccCCchhhHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q psy15142 315 LG-KVKHINWTVAQESAVDSSFFWGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQGL 393 (744)
Q Consensus 315 ~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 393 (744)
.+ ..+.+|.+..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.++ ....++.+.+ +..++.|+
T Consensus 283 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~g~ 359 (438)
T 3o7q_A 283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI--SAFAGGHVGL-IALTLCSA 359 (438)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH--HHHCCHHHHH-HHHHHHHH
T ss_pred HHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH--HHHcCCcHHH-HHHHHHHH
Confidence 23 34566999999999999999999999999999999999999999998888887766 4455555443 34478889
Q ss_pred hhhhhhhHHhHHhhhccCccchhHHHHHHHHHhhhHHHhhHHHHHHhhhccC-chhHHHHHHHHHHHHH
Q psy15142 394 VEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAILTEHFS-WEAMFYFYGCMGLLWY 461 (744)
Q Consensus 394 ~~~~~~~~~~~~~~e~~p~~~Rg~~~g~~~~~~~~g~~ig~~i~~~l~~~~g-w~~~f~~~~~~~~~~~ 461 (744)
+.+..++...++..|.+|++ |+.+.++.. ...+|..++|.+.|.+.+..| ++..|++.+++.++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 360 FMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 99999999999999999966 888888877 667999999999999999998 9999887665544443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.87 E-value=2e-22 Score=225.80 Aligned_cols=336 Identities=12% Similarity=0.021 Sum_probs=224.9
Q ss_pred hccccc-ccccccchHHHHHHHHHHHHHHHHH-HHHhCCcccchhhhhHHhhhhhHHHHHHHHHHhcCChhHHHHHHHHH
Q psy15142 123 LQFEGR-TGFIGSLPHLLMTIVVPCGGMLADH-LRKKGILSTTMVRKLFNCGGFGMEAFFFVVVAYTKSEVTATMALCLG 200 (744)
Q Consensus 123 ~~~~~~-~g~~~~~~~~~~~~g~~~~G~lsDr-~~~r~~l~~~~gRk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (744)
++.+.. .|++.+++.++..++++++|+++|| + |||+++++++++.+++.++++++++.+.+++.|++.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~----------g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 118 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRII----------GARPAVFWGGVLIMLGHIVLALPFGASALFGSIILI 118 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------CHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------cchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455543 4999999999999999999999999 8 788899999999999999999999999999999999
Q ss_pred HHhhhcccccccccccccCc-ch--hhHHHHHHhhhhhhhhHHHhhhccCCcccchhhHHHhHh---h----------hH
Q psy15142 201 VAFSGFAISGYNVNHLDIAP-RY--ASILMGMSNGIGTIDIFISYIGRRGKSTMDADMQQKAID---A----------TK 264 (744)
Q Consensus 201 ~~~~g~~~~~~~~~~~e~~p-~~--rg~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~----------~~ 264 (744)
|++.|...+...++++|+.| ++ |++.+++++.+.++|.++++.+.....+...+....... . ..
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 119 IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999997 45 788899899999999888876543322211111100000 0 00
Q ss_pred hhhhh----hc---hhhHHHHHHHH--------------------------------------------hhh-----hcC
Q psy15142 265 EGLEK----FN---IEREVATYIKQ--------------------------------------------YFE-----NAY 288 (744)
Q Consensus 265 ~~~~~----~~---~~~~~~~~~~~--------------------------------------------~~~-----~~~ 288 (744)
+...+ .. ..++..+..+. .++ ...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (491)
T 4aps_A 199 KTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTE 278 (491)
T ss_dssp TTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred ccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHH
Confidence 00000 00 00000010000 000 011
Q ss_pred CCcceeh---hhhhhcccccchhhheeeecccccccccCchhhHHHHHHHHHHHHHhhhhhHHhhhccCCchhhH-----
Q psy15142 289 GPYWQCV---VGRNFGSYVSFETHYIYFYLGKVKHINWTVAQESAVDSSFFWGYLITQVPGGFFASRYPANRIFG----- 360 (744)
Q Consensus 289 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~Grr~~l~----- 360 (744)
+++.... ....+..+..+.........+..+.++.+....+++.+...++..++.++.|+++||+|||+...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~ 358 (491)
T 4aps_A 279 HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFA 358 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHH
Confidence 1111111 11111111111111111111223445555566778888888888999999999999999987655
Q ss_pred HHHHHHHHHHHHHHHHhh---------cChHHHHHHHHHHhhhhhhhhhHHhHHhhhccCccchhHHHHHHHHHhhhHHH
Q psy15142 361 TAIACTSFLHLFVPTAIK---------LNPGSVIIVRICQGLVEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIV 431 (744)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~p~~~Rg~~~g~~~~~~~~g~~ 431 (744)
.+.++.+++.+++ ... .+.+.+++..++.|++.+...+...+++.|.+|++.|+++.|+.+....+|..
T Consensus 359 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 359 VGLMFAGLSFLLM--AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HHHHHHHHHHTTT--HHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665542 222 26667777888899999998999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHhhcccC
Q psy15142 432 LGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLWLSFEK 471 (744)
Q Consensus 432 ig~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~e~ 471 (744)
+++.+.+.+.+. ++...|.+.++++++..++.+++.++.
T Consensus 437 i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 437 LNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887654 677788888888777766666554443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.83 E-value=2.5e-20 Score=204.23 Aligned_cols=250 Identities=11% Similarity=0.067 Sum_probs=161.3
Q ss_pred cccccccCchhhHHHHHHHHHHHHHhhhhhHHhhhccCCchhhHHHHHHHHHHHHHHH-HHhhcCh-HHHHHHHHHHhhh
Q psy15142 317 KVKHINWTVAQESAVDSSFFWGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVP-TAIKLNP-GSVIIVRICQGLV 394 (744)
Q Consensus 317 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~l~G~~ 394 (744)
..+++|+++.+.|++.+++.++..++++++|+++||+|||++++++.++.+++..... ....... ..++..+++.|++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566899999999999999999999999999999999999999988876654321100 1111111 0123344555554
Q ss_pred hhhhhhHHhHHhhhccCc--cchhHHHHHHHHHhhhHHHhhHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHhhcccCC
Q psy15142 395 EGVCYPAVHGIWRFWAPP--LERSRLATIAFCGTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLWLSFEKP 472 (744)
Q Consensus 395 ~~~~~~~~~~~~~e~~p~--~~Rg~~~g~~~~~~~~g~~ig~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~e~p 472 (744)
.+..++.....+.++.++ +.|+...|.......+|..++|.+++.+.+ .+|+..|++.+++.++..++.++..||++
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAP 192 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCS
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 444443333334444332 456777788888889999999999999887 58999998877765544444433333332
Q ss_pred CCCCCCChHHHHHHHHhhcccccccCCCCCCCcHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---Chh
Q psy15142 473 CLHPTISGRELLYIEKSLGSSVQVAMPTLATTPWREFAHSMPVYAIIVANFCRSWNFYLLVLFQASYLKSTFHL---QIQ 549 (744)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~---s~~ 549 (744)
+..+ .++. . +.+..+.....+++++++|.++...+..+.....+..+..++|.|+.+.++. +..
T Consensus 193 ~~~~---~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (417)
T 2cfq_A 193 SSAT---VANA---------V-GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTR 259 (417)
T ss_dssp CSSC---SSSS---------S-SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTH
T ss_pred cccc---cccc---------c-ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChh
Confidence 2110 0000 0 0000011112356788899988776665555556666666788888764432 234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Q psy15142 550 ETGFIGSLPHLLMTIVVPCGGMLADHLRKKG 580 (744)
Q Consensus 550 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~ 580 (744)
..+++.++..++.+++.++.++++||+++|+
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 290 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKN 290 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH
Confidence 4567777777888899999999999999884
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.80 E-value=5.1e-21 Score=209.75 Aligned_cols=336 Identities=10% Similarity=-0.021 Sum_probs=200.0
Q ss_pred hhcccc-cccccccchHHHHHHHHHHHHHHHHHHHHhCCcccchhhhhHHhhhhhHHHHHH---HHHHhcCCh-hHHHHH
Q psy15142 122 KLQFEG-RTGFIGSLPHLLMTIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFF---VVVAYTKSE-VTATMA 196 (744)
Q Consensus 122 ~~~~~~-~~g~~~~~~~~~~~~g~~~~G~lsDr~~~r~~l~~~~gRk~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~ 196 (744)
.+|.+. +.|++.++..+++.++++++|+++||+ |||+++++++.+.+++. ....+++.. ...+..
T Consensus 37 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~----------Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T 2cfq_A 37 INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL----------GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106 (417)
T ss_dssp TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS----------TTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345655 449999999999999999999999999 66667766665544321 111222111 112334
Q ss_pred HHHHHHhhhcccccccccccccCc---chhhHHHHHHhhhhhhhhHHHhhhccCCcccc-hhhHHHhH--h--h-hH-hh
Q psy15142 197 LCLGVAFSGFAISGYNVNHLDIAP---RYASILMGMSNGIGTIDIFISYIGRRGKSTMD-ADMQQKAI--D--A-TK-EG 266 (744)
Q Consensus 197 ~~~~~~~~g~~~~~~~~~~~e~~p---~~rg~~~g~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~--~--~-~~-~~ 266 (744)
+.+.+.+.|...+.....+.++.+ +++|...|..+..+++|..+++.+........ ........ . . .. ..
T Consensus 107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~ 186 (417)
T 2cfq_A 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 555555555544444444444443 34677788888888888777765332111100 00000000 0 0 00 00
Q ss_pred -hhhh------------chhhHHHHHHHHhhhhcCCCcceehhhhhhcccccchhhheeeeccccccc---ccCchhhHH
Q psy15142 267 -LEKF------------NIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFETHYIYFYLGKVKHI---NWTVAQESA 330 (744)
Q Consensus 267 -~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~ 330 (744)
.++. ..++......++.++++ +.+...+. .+.....+.........+..+.+ +.+....++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 263 (417)
T 2cfq_A 187 AKTDAPSSATVANAVGANHSAFSLKLALELFRQP--KLWFLSLY-VIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGY 263 (417)
T ss_dssp SCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHH
T ss_pred cCcccccccccccccccccccccHHHHHHHhcCC--chhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHH
Confidence 0000 00000001111222111 11211111 11111111100000000111112 223445677
Q ss_pred HHHHHHHHHHHhhhhhHHhhhccCCchhhHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhhhhhHHhHHhhhcc
Q psy15142 331 VDSSFFWGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQGLVEGVCYPAVHGIWRFWA 410 (744)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~ 410 (744)
+.++..++..++.++.|+++||+|||+++..+.++.+++.++ .++.++.+.+++..++.+++.+...+....+++|.+
T Consensus 264 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 264 VTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG--SSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--HTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH--HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 777888888899999999999999999998888887777655 455667777777777788877777777889999999
Q ss_pred CccchhHHHHHH-HHHhhhHHHhhHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHhhcccCC
Q psy15142 411 PPLERSRLATIA-FCGTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLWLSFEKP 472 (744)
Q Consensus 411 p~~~Rg~~~g~~-~~~~~~g~~ig~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~e~p 472 (744)
|++.||++.++. +....+|+.++|.++|.+.+..|+...|.+.+++.++..++.+++.||++
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999994 78888999999999999999888888998888888777766666555543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.78 E-value=6.6e-19 Score=198.88 Aligned_cols=147 Identities=16% Similarity=0.073 Sum_probs=132.1
Q ss_pred ccccc------cCchhhHHHHHHHHHHHHHhhhhhHHhhhcc-CCchhhHHHHHHHHHHHHHHHHHhhc-ChHHHHHHHH
Q psy15142 318 VKHIN------WTVAQESAVDSSFFWGYLITQVPGGFFASRY-PANRIFGTAIACTSFLHLFVPTAIKL-NPGSVIIVRI 389 (744)
Q Consensus 318 ~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 389 (744)
.+++| ++..+.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.++ .++++ +.+.+++.|+
T Consensus 40 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 117 (524)
T 2xut_A 40 MTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAF--LAIFEHSVQGFYTGLF 117 (524)
T ss_dssp HHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHH--HHHTSSCHHHHHHHHH
T ss_pred HHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH--HHHhcccHHHHHHHHH
Confidence 45677 9999999999999999999999999999999 9999999999999998887 56777 8999999999
Q ss_pred HHhhhhhhhhhHHhHHhhhccCccchhHHHHH---HHHHhhhHHHhhHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHh
Q psy15142 390 CQGLVEGVCYPAVHGIWRFWAPPLERSRLATI---AFCGTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLW 466 (744)
Q Consensus 390 l~G~~~~~~~~~~~~~~~e~~p~~~Rg~~~g~---~~~~~~~g~~ig~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 466 (744)
+.|++.+...+...++++|++|+++|+++.+. .+.+..+|..++|.+++.+.+..||++.|++.+++.++..++.++
T Consensus 118 l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 118 LIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876666 889999999999999999998899999999988887666555443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.78 E-value=3.2e-21 Score=207.96 Aligned_cols=315 Identities=10% Similarity=-0.081 Sum_probs=215.9
Q ss_pred hccccc-ccccccchHHHHHHHHHHHHHHHHHHHHhCCcccchhhhhHHhhhhhHHHHHHHHHHhcCChhHHHHHHHHHH
Q psy15142 123 LQFEGR-TGFIGSLPHLLMTIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFFVVVAYTKSEVTATMALCLGV 201 (744)
Q Consensus 123 ~~~~~~-~g~~~~~~~~~~~~g~~~~G~lsDr~~~r~~l~~~~gRk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (744)
++.+.. .|++.++..++..++++++|+++||+ |||+.++++.++.+++.++.+++++.+.+++.|++.|
T Consensus 30 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----------g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g 99 (375)
T 2gfp_A 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV----------GRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99 (375)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344443 49999999999999999999999999 6777888999999999999999999999999999999
Q ss_pred HhhhcccccccccccccCc-chhhHHHHHHhhhhhhhhHHHhhhccCCcccchhhHHHhHhhh---Hh-h-----hhhhc
Q psy15142 202 AFSGFAISGYNVNHLDIAP-RYASILMGMSNGIGTIDIFISYIGRRGKSTMDADMQQKAIDAT---KE-G-----LEKFN 271 (744)
Q Consensus 202 ~~~g~~~~~~~~~~~e~~p-~~rg~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-----~~~~~ 271 (744)
++.+...+...+++.|..| ++|++.+|+.+....+|.++++.+.....+...+......... .. . .++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 9999999999999999997 5799999999999999999998765444332121111100000 00 0 00000
Q ss_pred h-hh---HHHHHHHHhhhhcCCCcceehhhhhhcccccchhhheeeecccccccccCchhhHHHHHHHHHHHHHhhhhhH
Q psy15142 272 I-ER---EVATYIKQYFENAYGPYWQCVVGRNFGSYVSFETHYIYFYLGKVKHINWTVAQESAVDSSFFWGYLITQVPGG 347 (744)
Q Consensus 272 ~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g 347 (744)
. ++ +..+..++.++++ +.+...+..+ ...........+...+..+.+|.++.+.+++.+...++..++.++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 256 (375)
T 2gfp_A 180 PVDAPRTRLLTSYKTLFGNS--GFNCYLLMLI-GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAG 256 (375)
T ss_dssp TTTCCCCCTTTCSTHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHhcCc--chHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0000011111111 1111111111 11111112222222333455788888999999999999999999999
Q ss_pred HhhhccCCchhhHHHHHH-HHHHHHHHHHHh--hcChHHHHHHHHHHhhhhhhhhhHHhHHhhhccCccchhHHHHHHHH
Q psy15142 348 FFASRYPANRIFGTAIAC-TSFLHLFVPTAI--KLNPGSVIIVRICQGLVEGVCYPAVHGIWRFWAPPLERSRLATIAFC 424 (744)
Q Consensus 348 ~l~Dr~Grr~~l~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~p~~~Rg~~~g~~~~ 424 (744)
++.||+|++ +..+..+ ..++..+..... .++.+.+++..++.|++.+...+...+++.|.+| ++|+++.|+.+.
T Consensus 257 ~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~ 333 (375)
T 2gfp_A 257 RPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGG 333 (375)
T ss_dssp TTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHH
Confidence 999999882 2233322 222221100111 2355666677888999999999999999999998 899999999999
Q ss_pred HhhhHHHhhHHHHHHhhhccCchhHHHHH
Q psy15142 425 GTYAGIVLGLPISAILTEHFSWEAMFYFY 453 (744)
Q Consensus 425 ~~~~g~~ig~~i~~~l~~~~gw~~~f~~~ 453 (744)
...+|..++|.+.+.+.+..++...+.+.
T Consensus 334 ~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 334 LQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 99999999999999998877777666653
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.75 E-value=7.9e-19 Score=198.22 Aligned_cols=336 Identities=10% Similarity=-0.094 Sum_probs=200.0
Q ss_pred cccc-ccccccchHHHHHHHHHHHHHHHHHHHHhCCcccchhhhhHHhhhhhHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q psy15142 125 FEGR-TGFIGSLPHLLMTIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFFVVVAYTK-SEVTATMALCLGVA 202 (744)
Q Consensus 125 ~~~~-~g~~~~~~~~~~~~g~~~~G~lsDr~~~r~~l~~~~gRk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 202 (744)
.+.. .|++.+++.++..++.+++|+++||+ .|||++++++.++.+++.+++++++ +.+.+++.|++.|+
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~---------~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 121 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRF---------FGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIAL 121 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS---------SCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5554 49999999999999999999999998 0456678888899999999999998 99999999999999
Q ss_pred hhhcccccccccccccCcc-hhhHHHHH---HhhhhhhhhHHHhhhccCCcccchhhHHHhHh---h----hHhhh--hh
Q psy15142 203 FSGFAISGYNVNHLDIAPR-YASILMGM---SNGIGTIDIFISYIGRRGKSTMDADMQQKAID---A----TKEGL--EK 269 (744)
Q Consensus 203 ~~g~~~~~~~~~~~e~~p~-~rg~~~g~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~--~~ 269 (744)
+.|...+...+++.|..|+ +||+..++ ++.+.++|.++++.+.........+....... . ..... ..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 201 (524)
T 2xut_A 122 GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKR 201 (524)
T ss_dssp HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999985 58776655 88888998888876543322211111100000 0 00000 00
Q ss_pred h---chhhHH-HH---H----HH--------------------------------------------------Hh---hh
Q psy15142 270 F---NIEREV-AT---Y----IK--------------------------------------------------QY---FE 285 (744)
Q Consensus 270 ~---~~~~~~-~~---~----~~--------------------------------------------------~~---~~ 285 (744)
. ..+.+. .+ . .+ .. .+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (524)
T 2xut_A 202 YIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLE 281 (524)
T ss_dssp CCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHH
T ss_pred ccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHh
Confidence 0 000000 00 0 00 00 00
Q ss_pred ----------hcCCCcceehhhhhhcccccc--hhhheeeecccccccccCc-hhhHHHHHHHHHHHHHhhhhhHHhh--
Q psy15142 286 ----------NAYGPYWQCVVGRNFGSYVSF--ETHYIYFYLGKVKHINWTV-AQESAVDSSFFWGYLITQVPGGFFA-- 350 (744)
Q Consensus 286 ----------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~-- 350 (744)
....++..............+ .............+.+.+. ...+++.+...++..++.++.+++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (524)
T 2xut_A 282 RARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYP 361 (524)
T ss_dssp HSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC---
T ss_pred hhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHH
Confidence 001111111111111100000 0000000000011122211 1345555555556666666666654
Q ss_pred --hccCCc----hhhHHHHHHHHHHHHHHHHHhh---------cChHHHHHHHHHHhhhhhhhhhHHhHHhhhccCccch
Q psy15142 351 --SRYPAN----RIFGTAIACTSFLHLFVPTAIK---------LNPGSVIIVRICQGLVEGVCYPAVHGIWRFWAPPLER 415 (744)
Q Consensus 351 --Dr~Grr----~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~e~~p~~~R 415 (744)
||.|+| +.+.++.++.+++.++ .+.. .+.+.+++..++.|++.+...+...+++.|.+|++.|
T Consensus 362 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 439 (524)
T 2xut_A 362 AIERMGVKLTALRKMGAGIAITGLSWIV--VGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439 (524)
T ss_dssp ---------CCHHHHHTHHHHHHHHHHT--TTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 554432 4556666776666655 3332 3566677788899999999999999999999999999
Q ss_pred hHHHHHHHHHhhhHHHhhHHHHHHhhhcc--Cc---------hhHHHHHHHHHHHHHHHHHhhcccC
Q psy15142 416 SRLATIAFCGTYAGIVLGLPISAILTEHF--SW---------EAMFYFYGCMGLLWYLCWLWLSFEK 471 (744)
Q Consensus 416 g~~~g~~~~~~~~g~~ig~~i~~~l~~~~--gw---------~~~f~~~~~~~~~~~~~~~~~~~e~ 471 (744)
|+++|+.+....+|..++|.+.+.+.+.. +| +..|++.+++.++..++.+++.++.
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887632 23 2336666666666666555554443
No 15
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=75.87 E-value=2.6 Score=34.64 Aligned_cols=67 Identities=51% Similarity=1.028 Sum_probs=52.8
Q ss_pred CcccchhhHHHhHhhhHhhhhhhchhhHHHHHHHHhhhhcCCCcceehhhhhhcccccchh-hheeee
Q psy15142 248 KSTMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET-HYIYFY 314 (744)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 314 (744)
...++++.+..+.+.+...+++...++++...+++.+++++.+.|.++++-.|+..++.-. .++++.
T Consensus 23 ~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~ 90 (102)
T 1yo3_A 23 NVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFY 90 (102)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEE
T ss_pred ECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEE
Confidence 3567788888888888888887777778888999999999999999999988888777665 444433
No 16
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=74.81 E-value=2.6 Score=33.76 Aligned_cols=65 Identities=55% Similarity=1.075 Sum_probs=50.9
Q ss_pred cccchhhHHHhHhhhHhhhhhhchhhHHHHHHHHhhhhcCCCcceehhhhhhcccccchh-hheee
Q psy15142 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET-HYIYF 313 (744)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 313 (744)
..++++.+..+.+.+...+++...++++...+++.+++++.+.|.++++-.|++.++.-. .++++
T Consensus 11 ~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF 76 (89)
T 3rjs_A 11 ADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYF 76 (89)
T ss_dssp EESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEE
Confidence 457777777777777777877776777788899999999999999999988887776655 44443
No 17
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=71.51 E-value=2.8 Score=34.10 Aligned_cols=66 Identities=36% Similarity=0.889 Sum_probs=51.5
Q ss_pred cccchhhHHHhHhhhHhhhhhhchhhHHHHHHHHhhhhcCCCcceehhhhhhcccccchh-hheeee
Q psy15142 249 STMDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET-HYIYFY 314 (744)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 314 (744)
..++++.+..+.+.+...+++...++++...+++.+++++.+.|.++++-.|++.++.-. .++++.
T Consensus 19 ~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~ 85 (97)
T 4ds1_A 19 SDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFY 85 (97)
T ss_dssp EEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEE
Confidence 457777777777777788877777777788899999999999999999888888777665 444433
No 18
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=61.88 E-value=1.5 Score=26.17 Aligned_cols=25 Identities=44% Similarity=0.712 Sum_probs=18.0
Q ss_pred hhhhhhhhhHH----HhHHhhhccCCCcc
Q psy15142 3 EKKKEKKEIWK----LELEKYKKKFPTFF 27 (744)
Q Consensus 3 ~~~~~~~~~~~----~~~~~~~~~~~~~~ 27 (744)
|-.|+-||+|| -|+|...|||-..|
T Consensus 5 elekkfkelwkgprrgeieelhkkfheli 33 (35)
T 1qp6_A 5 ELEKKFKELWKGPRRGEIEELHKKFHELI 33 (35)
T ss_dssp HHHHHHHHHHSSSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccchHHHHHHHHHHHh
Confidence 45566789997 57888888875443
No 19
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=39.78 E-value=13 Score=21.77 Aligned_cols=15 Identities=60% Similarity=0.999 Sum_probs=10.3
Q ss_pred hhhHHHhHHhhhccCC
Q psy15142 9 KEIWKLELEKYKKKFP 24 (744)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (744)
-|||||.-| +-|||.
T Consensus 4 geiwklhee-flkkfe 18 (32)
T 1m3w_A 4 GEIWKLHEE-FLKKFE 18 (32)
T ss_dssp HHHHHHHHH-HHHHHH
T ss_pred chHHHHHHH-HHHHHH
Confidence 489999744 555664
No 20
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=36.93 E-value=21 Score=28.59 Aligned_cols=31 Identities=6% Similarity=-0.007 Sum_probs=27.1
Q ss_pred hhhhhHHHhHHhhhccCCCccchhHHHHHHh
Q psy15142 7 EKKEIWKLELEKYKKKFPTFFNGEEQELVMR 37 (744)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (744)
.++|+|....++-.+..+--|++||++-|..
T Consensus 56 ~~~e~w~~iv~~M~~mpg~~Is~eda~~Iv~ 86 (92)
T 3a9f_A 56 KKTGQVNLIVKRMQGFPGSGISDDDAKTIGI 86 (92)
T ss_dssp TTTTCHHHHHHHHHHSTTCCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 4569999999999988899999999987764
No 21
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=20.22 E-value=33 Score=19.14 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=11.2
Q ss_pred hhHHhhhccCCchh
Q psy15142 345 PGGFFASRYPANRI 358 (744)
Q Consensus 345 ~~g~l~Dr~Grr~~ 358 (744)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36889999999864
Done!