RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15142
(744 letters)
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 189 bits (482), Expect = 1e-52
Identities = 111/396 (28%), Positives = 164/396 (41%), Gaps = 57/396 (14%)
Query: 322 NWTVAQESAVDSSFFWGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVPTAIKLNP 381
W+ A + + SS F+G +I Q+P G+ A +Y G + +S + + +P A
Sbjct: 72 KWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGI 131
Query: 382 GSVIIVRICQGLVEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAILT 441
V+ R+ QGL +G PA H I WAPP ERSRL ++ G G + LPIS L
Sbjct: 132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC 191
Query: 442 EHFS-WEAMFYFYGCMGLLWYLCWLWLSFEKPCLHPTISGRELLYIEKSLGSSVQVAMPT 500
E + W +FY +G +G W L W + P +HP IS E YI SL T
Sbjct: 192 ESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSL---QGQKGST 248
Query: 501 LATTPWREFAHSMPVYAIIVANFCRSWNFYLLVLFQASYLKSTFHLQIQETGFIGSLPHL 560
+ P + S+PV+AI A F W + +L + +++ + +E G + SLP+L
Sbjct: 249 RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL 308
Query: 561 LMTIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFFVVVAYTKSE-------- 612
+ G LAD L+ LS T RK+FN G F + Y +
Sbjct: 309 FAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIIL 368
Query: 613 -------------------------------VTATMALCLGI--------------EGRW 627
+T G+ + W
Sbjct: 369 TLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVW 428
Query: 628 TVVFLIAATVHFIGITFYAIFASGELQPWAEPTSEE 663
+VFLI A V+ + + FY IF S E Q WA+ +
Sbjct: 429 LIVFLIMAFVNILCVIFYLIFGSAERQDWAKEEKDT 464
Score = 74.4 bits (183), Expect = 6e-14
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 130 GFIGSLPHLLMTIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFFVVVAYTKS 189
G + SLP+L + G LAD L+ LS T RK+FN G F + Y +
Sbjct: 300 GLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSA 359
Query: 190 E-VTATMALCLGVAFSGFAISGYNVNHLDIAPRYASILMGMSNGIGTIDIFIS 241
+ L L A S ++G +N LD+APR+ + G++ G I I+
Sbjct: 360 AFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIA 412
>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1.
Length = 86
Score = 113 bits (284), Expect = 5e-30
Identities = 37/69 (53%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 251 MDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET-H 309
M +MQ+ AI+ E LEKFN+E+++A +IK+ F+ YGP W C+VG+NFGSYV+ ET H
Sbjct: 10 MPEEMQEDAIECAAEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNFGSYVTHETKH 69
Query: 310 YIYFYLGKV 318
+IYFY+G++
Sbjct: 70 FIYFYIGQL 78
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 114 bits (288), Expect = 2e-27
Identities = 71/301 (23%), Positives = 116/301 (38%), Gaps = 9/301 (2%)
Query: 326 AQESAVDSSFFWGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVPTAIKLNPGSVI 385
AQ V S+F WGY++ Q PGG+ R+ A + I A S+
Sbjct: 29 AQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGL--QAFAGAYVSLY 86
Query: 386 IVRICQGLVEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAILTEHFS 445
I+R+ G E +P + I W P ER+ +I G ++G P+ + HFS
Sbjct: 87 ILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS 146
Query: 446 WEAMFYFYGCMGLLWYLCWLWLSFEKPCLHPTISGRELLYIE-KSLGSSVQVAMPTLATT 504
W+ F G +G++W + WL + P E YI L + Q P+
Sbjct: 147 WQWAFIIEGVLGIIWGVLWLKFIPDPP-QKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKK 205
Query: 505 P--WREFAHSMPVYAIIVANFCRSWNFYLLVLFQASYLKSTFHLQIQETGFIGSLPHLLM 562
V+ + + F + + + +YL L I E GF+ SLP ++
Sbjct: 206 YQIKELLKDRR-VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVG 264
Query: 563 TIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFFVVVAYTKSEVTATMALCLG 622
I + GG L+D L ++G + + + + + Y A + LG
Sbjct: 265 FIGMILGGRLSDLLLRRG--KSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALG 322
Query: 623 I 623
Sbjct: 323 F 323
Score = 32.7 bits (75), Expect = 0.69
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 8/118 (6%)
Query: 98 YTMATLTCVGFIISFG--MKCNLGFAKLQFEGRTGFIGSLPHLLMTIVVPCGGMLADHLR 155
+ + F+ F + G + L+ GF+ SLP ++ I + GG L+D L
Sbjct: 224 QFLVNIGLGFFLTWFPTYLVQERGLSILE----AGFMASLPGIVGFIGMILGGRLSDLLL 279
Query: 156 KKGILSTTMVRKLFNCGGFGMEAFFFVVVAYTKSEVTATMALCLGVAFSGFAISGYNV 213
++G + + + + + Y A + LG G G+ +
Sbjct: 280 RRG--KSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWAL 335
>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional.
Length = 90
Score = 105 bits (263), Expect = 3e-27
Identities = 43/69 (62%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 251 MDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFET-H 309
M DMQQ AID + LEKFNIE+++A YIK+ F+ Y P W C+VGRNFGSYV+ ET H
Sbjct: 14 MSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 73
Query: 310 YIYFYLGKV 318
+IYFYLG+V
Sbjct: 74 FIYFYLGQV 82
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 112 bits (283), Expect = 4e-27
Identities = 63/323 (19%), Positives = 112/323 (34%), Gaps = 25/323 (7%)
Query: 299 NFGSYVSFETHYIYFYLGKVKHINWTVAQESAVDSSFFWGYLITQVPGGFFASRYPANRI 358
F + + L + + + + + ++F GY + Q G + R+ R+
Sbjct: 5 AFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRV 64
Query: 359 FGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQGLVEGVCYPAVHGIWRFWAPPLERSRL 418
+ + L + A + ++++R+ QGL G +PA + W PP ER R
Sbjct: 65 LLIGLLLFALGLLLLLFAS--SLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRA 122
Query: 419 ATIAFCGTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLWLSFEKPCLHPTI 478
+ G G LG + +L F W A F + LL + L P
Sbjct: 123 LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRP 182
Query: 479 SGRELLYIEKSLGSSVQVAMPTLATTPWREFAHSMPVYAIIVANFCRSWNFYLLVLFQAS 538
E P + PV +++A + F+ L+ +
Sbjct: 183 KPAEEA---------------PAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPL 227
Query: 539 YLKSTFHLQIQETGFIGSLPHLLMTIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGM 598
Y + L G + L LL I G L+D L ++ R L +
Sbjct: 228 YQE-VLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRR-------RRLLLALLLLIL 279
Query: 599 EAFFFVVVAYTKSEVTATMALCL 621
A +++ T+S + +AL L
Sbjct: 280 AALGLALLSLTESSLWLLVALLL 302
Score = 36.6 bits (85), Expect = 0.044
Identities = 45/356 (12%), Positives = 103/356 (28%), Gaps = 39/356 (10%)
Query: 99 TMATLTCVGFIISFGMKCNLGFAKLQFEGRTGFIGSLPHLLMTIVVPCGGMLADHLRKKG 158
+ +G + + +LG + + G + + L + P G L+D +
Sbjct: 8 AGLGRSLLGPALPLYLAEDLGISPTEI----GLLLTAFSLGYALAQPLAGRLSDRFGR-- 61
Query: 159 ILSTTMVRKLFNCGGFGMEAFFFVVVAYTKSEVTATMALCLGVAFSGFAISGYNVNHLDI 218
R++ G +++ + + + + G+ + + D
Sbjct: 62 -------RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIA-DW 113
Query: 219 APR----YASILMGMSNGIGTI------DIFISYIGRRGK-------STMDADMQQKAID 261
P A L+ G+G + S G R + + A + +
Sbjct: 114 FPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLP 173
Query: 262 ATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSFETHYIYFYLGKVKHI 321
++ E + ++ ++ +F Y L + +
Sbjct: 174 RPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPL-YQEVL 232
Query: 322 NWTVAQESAVDSSFFWGYLITQVPGGFFASRYPANR----IFGTAIACTSFLHLFVPTAI 377
+ + I ++ G + R R I L L T
Sbjct: 233 GLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLT-- 290
Query: 378 KLNPGSVIIVRICQGLVEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLG 433
+ +++ + G G+ +PA++ + AP ER + + G LG
Sbjct: 291 -ESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
Score = 34.7 bits (80), Expect = 0.16
Identities = 26/171 (15%), Positives = 47/171 (27%), Gaps = 40/171 (23%)
Query: 518 IIVANFCRSWNFYLLVLFQASYLKSTFHLQIQETGFIGSLPHLLMTIVVPCGGMLADHL- 576
+ +A F LL YL + E G + + L + P G L+D
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 577 RKKGILSTTMVRKLFNCGGFGMEAFFFVVVA----------------------YTKSEVT 614
R++ +L ++ L + + ++V + E
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120
Query: 615 ATMALC-----------------LGIEGRWTVVFLIAATVHFIGITFYAIF 648
+ L L W FLI A + + A+
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL 171
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 112 bits (282), Expect = 7e-27
Identities = 69/373 (18%), Positives = 117/373 (31%), Gaps = 87/373 (23%)
Query: 318 VKHINWTVAQESAVDSSFFWGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVPTAI 377
+ + + +Q + S+F GY + + G+ + R+ R+ + + L + A
Sbjct: 26 AEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA- 84
Query: 378 KLNPGSVIIVRICQGLVEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPIS 437
+ +++ R GL G YPA + W PP ER R + G G +LG +
Sbjct: 85 -SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLG 143
Query: 438 AILTEHFSWEAMFYFYGCMGLLWYLCWLWLSFEKPCLHPTISGRELLYIEKSLGSSVQVA 497
+L E W +F +GLL L L+L
Sbjct: 144 GLLAESLGWRWLFLILAILGLLLALLLLFLL----------------------------- 174
Query: 498 MPTLATTPWREFAHSMPVYAIIVANFCRSWNFYLLVLFQASYLKSTFHLQIQETGFIGSL 557
+ + +A F S+ +Y L+ + YL+ L E G + SL
Sbjct: 175 ---------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSL 219
Query: 558 PHLLMTIVVPCGGMLADHLRKK-------------GILSTTMVRKLFN------CGGFGM 598
L + GG+L+D L ++ G+L + L GFG+
Sbjct: 220 FGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGL 279
Query: 599 EAFF-----FVVVAYTKSEVTATMALCLGI-----------------EGRWTVVFLIAAT 636
F L G + VFLI A
Sbjct: 280 GFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAA 339
Query: 637 VHFIGITFYAIFA 649
+ + +
Sbjct: 340 LALLAALLLLLLP 352
Score = 50.4 bits (121), Expect = 2e-06
Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 12/172 (6%)
Query: 300 FGSYVSFETHYIYFYLGKVKHINWTVAQESAVDSSFFW-GYLITQVPGGFFASRYPANR- 357
Y T Y+ YL +V ++ A E+ + S F G ++ + GG + R R
Sbjct: 188 SFGYYGLLT-YLPLYLQEVLGLS---AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL 243
Query: 358 --IFGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQGLVEGVCYPAVHGIWRFWAPPLER 415
+ G +A L A+ + +++ + G G +PA+ + APP R
Sbjct: 244 LLLIGLLLAALGLL----LLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEAR 299
Query: 416 SRLATIAFCGTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLWL 467
+ + G LG ++ +L + + +F + LL L L L
Sbjct: 300 GTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351
Score = 40.0 bits (94), Expect = 0.003
Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 10/138 (7%)
Query: 100 MATLTCVGFIISFGMKCNLGFAKLQFEGRTGFIGSLPHLLMTIVVPCGGMLADHLRKKGI 159
L+ + + + L G + SL L + GG+L+D L +
Sbjct: 184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR--- 240
Query: 160 LSTTMVRKLFNCGGFGMEAFFFVVVAYTKSEVTATMALCL-GVAFSGFAISGYNVNHLDI 218
R+L G + A +++A S +AL L G + +
Sbjct: 241 ------RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA 294
Query: 219 APRYASILMGMSNGIGTI 236
P G+ N G++
Sbjct: 295 PPEARGTASGLFNTFGSL 312
Score = 30.0 bits (68), Expect = 5.4
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 515 VYAIIVANFCRSWNFYLLVLFQASYLKSTFHLQIQETGFIGSLPHLLMTIVVPCGGMLAD 574
+ + + F + LL + L + G I S L + G L+D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSD 59
Query: 575 HLRKKGILSTTMV 587
++ +L ++
Sbjct: 60 RFGRRRVLLLGLL 72
>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein;
Provisional.
Length = 128
Score = 53.8 bits (129), Expect = 1e-08
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 249 STMDADMQQKAIDATKEGLE----KFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYV 304
S M +Q +A ++ L+ K + +R +A +K+ F++AYGP W C+VG +FGSYV
Sbjct: 41 SDMPLVLQNRAFSCARDILDAMPGKLDSKR-LALALKKEFDSAYGPAWHCIVGTSFGSYV 99
Query: 305 SFET-HYIYFYLGKV 318
+ T ++YF + KV
Sbjct: 100 THSTGGFLYFSIDKV 114
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 57.0 bits (136), Expect = 1e-08
Identities = 50/328 (15%), Positives = 96/328 (29%), Gaps = 11/328 (3%)
Query: 292 WQCVVGRNFGSYVSFETHYIYFYLGKVKHINWTVAQESAVDSSFFWGYLITQVPGGFFAS 351
+ L ++ + S+FF GY I + G
Sbjct: 5 LALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD 64
Query: 352 RYPANRIFGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQGLVEGVCYPAVHGIWRFWAP 411
RY ++ + L + A + ++I+R+ QGL G P + W P
Sbjct: 65 RYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFP 124
Query: 412 PLER--SRLATIAFCGTYAGIVLGLPISAILTEHF--SWEAMFYFYGCMGLLWYLCWL-- 465
+ + G+ LG ++ +L W A F +GLL + L
Sbjct: 125 EATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLL 184
Query: 466 -----WLSFEKPCLHPTISGRELLYIEKSLGSSVQVAMPTLATTPWREFAHSMPVYAIIV 520
I +LL + L V + F + + +
Sbjct: 185 DLLLAAPRLPLAVGLALIELGKLLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLLGLGL 244
Query: 521 ANFCRSWNFYLLVLFQASYLKSTFHLQIQETGFIGSLPHLLMTIVVPCGGMLADHLRKKG 580
A +L++ L + L G L +L+ + G ++ L
Sbjct: 245 ALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLALILLGLAGLLGTLVGGSLLVDR 304
Query: 581 ILSTTMVRKLFNCGGFGMEAFFFVVVAY 608
+ + +R + G + V++
Sbjct: 305 LGRSLGLRAILLAGALLLAILLLVLLLA 332
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 55.5 bits (134), Expect = 6e-08
Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 4/156 (2%)
Query: 333 SSFFWGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQG 392
SSF Y I++ G + R + + ++LF + L + + G
Sbjct: 37 SSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL--WVMAALWALNG 94
Query: 393 LVEGVCYPAVHGIWRFWAPPLERSRLATIAFCG-TYAGIVLGLPISAILTEHFSWEAMFY 451
+ +G+ +P W ER + C G +L + + E +SW +F
Sbjct: 95 IFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154
Query: 452 FYGCMGLLWYLCWLWLSFEKPCLHPTISGRELLYIE 487
G + ++ L L + P + E + E
Sbjct: 155 VPGIIAIIVSLICFLLLRDSP-QSCGLPPAEEMPNE 189
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 46.9 bits (112), Expect = 3e-06
Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 10/131 (7%)
Query: 333 SSFFWGYLITQVPGGFFASRYPANR----IFGTAIACTSFLHLFVPTAIKLNPGSVIIVR 388
+ + G LI G R+ R + G I F+ A+ N +II R
Sbjct: 5 AGYALGQLIYSPLSGLLTDRF--GRKPVLLVGLFI----FVLSTAMFALSSNITVLIIAR 58
Query: 389 ICQGLVEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAILTEHFSWEA 448
QG A + PP ER + G G +LG P+ +L + W A
Sbjct: 59 FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118
Query: 449 MFYFYGCMGLL 459
F F + L
Sbjct: 119 PFLFLAILALA 129
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 44.5 bits (106), Expect = 1e-04
Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 3/148 (2%)
Query: 333 SSFFWGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQG 392
+++ G + R R+ +A +L A+ + +++ R G
Sbjct: 55 TAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS--ALAPSFAVLLLARALAG 112
Query: 393 LVEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAILTEHFSWEAMFYF 452
L GV + + PP +R R + F G VLG+P+ L + F W A F
Sbjct: 113 LAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA 172
Query: 453 YGCMGLLWYLCWLWLSFEKPCLHPTISG 480
+ LL L LW + ++ G
Sbjct: 173 IAVLALL-ALLLLWKLLPPSEISGSLPG 199
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 44.6 bits (106), Expect = 1e-04
Identities = 53/285 (18%), Positives = 90/285 (31%), Gaps = 54/285 (18%)
Query: 384 VIIVRICQGLVEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAILTEH 443
+++ R+ QG G + +APP +R + G G++L +L+
Sbjct: 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL 158
Query: 444 FSWEAMFYFYGCMGLLWYLCWLWLSFEKPCLHPTISGREL----LYIEKSLGSSV----Q 495
+A+ L W W P + L LY+ ++L +
Sbjct: 159 LGDDAL------------LEWGWRI-------PFLVSAVLVLIGLYLRRNLEETPVFEKA 199
Query: 496 VAMPTLATTPWREF--AHSMPVYAIIVANFCRSWNFYLLVLFQASYLKSTFHLQIQETGF 553
P E H P + + FYL+ + +YL T L
Sbjct: 200 QEKHKKKRGPIAETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALL 259
Query: 554 IGSLPHLLMTIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFFVVVAYTKSEV 613
+ L +L I +P G L+D + ++ +L F + A V
Sbjct: 260 VLMLSLILFFITIPLSGALSDRIGRRPVLI-----------IFTVLAALLAVPLL----- 303
Query: 614 TATMALCLGIEGRWTVVFLIAATVH-FIGITFYAIFAS--GELQP 655
MAL ++ +F IG + S EL P
Sbjct: 304 ---MAL---LDSGSFTLFFFLVLGMALIGGMYTGPMGSFLPELFP 342
Score = 29.2 bits (66), Expect = 8.5
Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 24/135 (17%)
Query: 98 YTMATLTCVGFIISFG---MKCNLGFAKLQFEGRTGFIGSLPHLLMTIVVPCGGMLADHL 154
+AT T I ++ + LG + + L +L I +P G L+D +
Sbjct: 227 LVIATTTTFYLITTYLPTYLTQTLGLSANSALL----VLMLSLILFFITIPLSGALSDRI 282
Query: 155 -RKKGILSTT---------MVRKLFNCGGFGMEAFFFVVVAYTKSEVTATMALCLG---- 200
R+ ++ T ++ L + G F + F + +A T M L
Sbjct: 283 GRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFLPELFP 342
Query: 201 --VAFSGFAISGYNV 213
V ++G +++ YN+
Sbjct: 343 TEVRYTGASLA-YNL 356
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 43.9 bits (104), Expect = 3e-04
Identities = 72/339 (21%), Positives = 109/339 (32%), Gaps = 69/339 (20%)
Query: 324 TVAQESAVDSS-----FFWGYLITQVPGGFF----ASRYPANRIFGTAIACTSFLHLFVP 374
++ E +D F G LI G F A R R+ +I S L
Sbjct: 42 AISAEWGLDPVQLGFLFSAG-LIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLL-- 98
Query: 375 TAIKLNPGSVIIVRICQGLVEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGL 434
A+ N ++I+R GL G P ++ + +AP R + FCG G +G
Sbjct: 99 CALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGG 158
Query: 435 PISAILTEHFSWEAMFYFYGCMGLLWYLCWLWLSFEKPCLHPTISGRELLYIEKSLGSSV 494
++ L F W ++FY G LL L L + F L +I ++ +V
Sbjct: 159 FLAGWLIPVFGWRSLFYVGGIAPLL--LLLLLMRF----LPESID-----FLVSKRPETV 207
Query: 495 QVAMPTLATTPWREFAHSMPVYAIIVANFCRSWNFYLLVLFQASYLKSTFHLQ------- 547
+ + +A E ++P RS LFQ + T L
Sbjct: 208 RRIVNAIAPQMQAEAQSALPE-QKATQGTKRS---VFKALFQGKTARITVLLWLLYFMLL 263
Query: 548 -------------IQETGFIGSLPHLLMTIVVPCGGM--------LADHLRKKGILSTTM 586
+ E GF SL + GG+ LAD L +
Sbjct: 264 VGVYFLTNWLPKLMVELGFSLSLAATGGALFN-FGGVIGSIIFGWLADRLGPRVTA---- 318
Query: 587 VRKLFNCGGFGMEAFFFVVVAYTKSEVT--ATMALCLGI 623
+ A F V+V T T + G
Sbjct: 319 -------LLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGF 350
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 42.4 bits (100), Expect = 8e-04
Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 3/147 (2%)
Query: 347 GFFASRYPANRIFGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQGLVEGVCYPAVHGIW 406
G+ A R+ R+F + + L A L +II R+ QG G P
Sbjct: 58 GWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLE--LMIIFRVIQGFGGGPLIPLSFSTL 115
Query: 407 RFWAPPLERSRLATIAFCGTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYL-CWL 465
PP +R R I LG + + E++ W +F +G++ + +
Sbjct: 116 LNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFF 175
Query: 466 WLSFEKPCLHPTISGRELLYIEKSLGS 492
L +KP LL + LGS
Sbjct: 176 ILPRDKPAASENFDFLGLLLLSVGLGS 202
>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease. This protein is
a part of the Major Facilitator Superfamily (Pfam family
pfam07690). Member of this family are found in a number
of proteobacterial genomes, but only in the context of
having genes for 4-hydroxyphenylacetate (4-HPA)
degradation. The protein is characterized by Prieto, et
al. (PMID:9315705) as 4-hydroxyphenylacetate permease in
E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are
shown to competitively inhibit 4-HPA transport and
therefore also interact specificially.
Length = 412
Score = 41.5 bits (97), Expect = 0.001
Identities = 50/216 (23%), Positives = 79/216 (36%), Gaps = 40/216 (18%)
Query: 335 FFWGYLITQVPGGFFASRYPANR-------IFGTAIACTSFLHLFVPTAIKLNPGSVIIV 387
F+ Y+I +P + A R ++G A T F P S+ ++
Sbjct: 52 FYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMF---------ATGPESLYLL 102
Query: 388 RICQGLVEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAI------LT 441
RI G+ E P + FW P R+R + + LGL +S L
Sbjct: 103 RILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM 162
Query: 442 EHFSWEAMFYFYGCMG-LLWYLCWLWLS-----------FEKPCLHPTISGRELLYIEKS 489
W+ +F G +L + W WL +K L I + L +E+
Sbjct: 163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMID-NDQLTLEQP 221
Query: 490 LGSSVQVAMPTLATTPWRE-FAHSMPVYAIIVANFC 524
G+ AMP + RE F ++ +Y + A FC
Sbjct: 222 EGAFAHAAMPQRSM--LREIFTPAIMLYTL--AYFC 253
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 33.4 bits (77), Expect = 0.46
Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 22/168 (13%)
Query: 323 WTVAQESAVDSSFFWGYLITQVPGGFFASRYPANRIFG-----TAIACTSFLHLFVPTAI 377
+ Q + S+F Y +++ G + R +AI F F P+
Sbjct: 61 LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFG--FSPSL- 117
Query: 378 KLNPGSVIIVRICQGLVEGVCYPAVHGIWRFWAPPLERSRLATI-----AFCGTYAGIVL 432
++ + G +G+ +P W ER +I G A +V
Sbjct: 118 ----FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173
Query: 433 GLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLWLSFEKP--CLHPTI 478
L A H W A FYF G + ++ L L+L ++P P I
Sbjct: 174 LL---AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPI 218
>gnl|CDD|147308 pfam05059, Orbi_VP4, Orbivirus VP4 core protein. Orbiviruses are
double stranded RNA retroviruses of which the bluetongue
virus is a member. The core of bluetongue virus (BTV) is
a multienzyme complex composed of two major proteins
(VP7 and VP3) and three minor proteins (VP1, VP4 and
VP6) in addition to the viral genome. VP4 has been shown
to perform all RNA capping activities and has both
methyltransferase type 1 and type 2 activities
associated with it.
Length = 642
Score = 33.6 bits (77), Expect = 0.47
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 15 ELEKYKKKFPTFFNGEEQELVMRLNTD-YEEFQIPNPPDDSNIPYAST 61
L Y KF F+G E E +M + ++ + +P P P
Sbjct: 120 ILRNYAFKFAIEFHGSEAETLMMADPRRHKVYGLPEIPPAYGHPAEIG 167
>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional.
Length = 390
Score = 32.9 bits (76), Expect = 0.55
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 410 APPLERSR----LATIAFCGTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWL 465
AP ++++ LAT GT +VLGLP+ ++ ++ W F G L+ L L
Sbjct: 126 APAGKKAQALSLLAT----GTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLL-L 180
Query: 466 W 466
Sbjct: 181 I 181
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 32.7 bits (75), Expect = 0.76
Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 12/140 (8%)
Query: 333 SSFFWGYLITQVPGGFFASRY---PANRIFGTAIACTSFLHLFVPTAIKLNPGSVIIVRI 389
+ + G+ Q+ G + RY P + A +S +++++R
Sbjct: 47 TLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNI-----ETLLVLRF 101
Query: 390 CQGLVEGVCYPAVHG--IWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAILTEHFSWE 447
Q G +V + R P E SR+ +I + + + SW
Sbjct: 102 VQAF--GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWH 159
Query: 448 AMFYFYGCMGLLWYLCWLWL 467
A+F F G+L ++
Sbjct: 160 AIFAFLSLAGILLSALIFFI 179
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 32.2 bits (74), Expect = 0.93
Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 29/193 (15%)
Query: 299 NFGSYVSFETHYIYFYLGKVKHINWTVAQESAVDSSFFWGYL--ITQVPGGFFASRYPAN 356
FG +V F YL + ++ +A +F + + + + GG+ + R
Sbjct: 230 TFGGFVGFS-----AYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR 284
Query: 357 RI----FGTAIACTSFLHLFVPTAIKLNP-----GSVIIVRICQGLVEGVCYPAVHGIWR 407
R+ F + L LF+ + + + GL G + + I+
Sbjct: 285 RVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP 344
Query: 408 FWAPPLERSRLAT--IAFCGTYAGIVLGLPISAILTEHFSWEAMFYFYG-----CMGLLW 460
+ + T + G G L L L S+ F + L W
Sbjct: 345 ------KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW 398
Query: 461 YLCWLWLSFEKPC 473
L P
Sbjct: 399 ALYARRREAPLPA 411
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous
[Energy metabolism, Pentose phosphate pathway].
Length = 653
Score = 32.4 bits (74), Expect = 1.0
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 2 KEKKKEKKEIWKLELEKYKKKFPTFFNGEEQELVMRLNTDYEE 44
KE+ + ++ W YKKK+P E RL+ +
Sbjct: 295 KERGAKAEQEWNELFAAYKKKYPELA----AEFTRRLSGELPA 333
>gnl|CDD|236275 PRK08486, PRK08486, single-stranded DNA-binding protein;
Provisional.
Length = 182
Score = 31.0 bits (70), Expect = 1.5
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 680 DEKYAIQNYGSTEDAPYNNYSNHIVAQPVQPASQDSYMNEQRNIVEESQNEFNPFKQTST 739
D K + +D ++ N+ SQD YMN+ ++ +QN + Q +
Sbjct: 106 DSKSDNPQANAMQDNSFHENFNNNYPGNYNNPSQDPYMNQAQSY---NQNAYAKENQQAQ 162
Query: 740 NP 741
P
Sbjct: 163 PP 164
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 30.7 bits (70), Expect = 2.0
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 219 APRYASILMGMSNGIGTIDIFISYIGRRGKST-MDADMQQKAIDATKEGLEKFNIER 274
PR L + G G+I I + G G+ ++ D ++A++ + +F ++
Sbjct: 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERD--EEALELIERNAARFGVDN 85
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 31.1 bits (71), Expect = 2.4
Identities = 26/146 (17%), Positives = 41/146 (28%), Gaps = 14/146 (9%)
Query: 289 GPYWQCVVGRNFGSYVSFETHYIYFYLGKVKHINWTVAQESAVDSSFFWGYLITQVPGGF 348
+ FG+ S + + S F G LI + G
Sbjct: 21 AFLTLIKFFKRFGALTSIGACAA------------STVLSGLIVSIFSVGCLIGSLFAGK 68
Query: 349 FASRYPANRIFGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQGLVEGVCYPAV-HGIWR 407
R+ + L A + +I+ R+ GL G V I
Sbjct: 69 LGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISE 128
Query: 408 FWAPPLERSRLATIAFCGTYAGIVLG 433
AP R L ++ G GI++
Sbjct: 129 I-APKKLRGALGSLYQLGITFGILVA 153
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 30.8 bits (70), Expect = 2.7
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 13/100 (13%)
Query: 385 IIVRICQGLVEGVCYPAVHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISA------ 438
+ R QG+ G CY I R R+++ ++ GI +P+ A
Sbjct: 95 LAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSL-----LNGITCIIPVLAPVLGHL 149
Query: 439 ILTEHFSWEAMFYFYGCMGLL-WYLCWLWLSFEKPCLHPT 477
I+ F W+++FY MG+L L L +P P
Sbjct: 150 IML-KFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPA 188
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 30.7 bits (70), Expect = 2.8
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 10/118 (8%)
Query: 346 GGFFASRYPANRIFGTAIACTSFLHLF----VPTAIKLNPGSVIIVRICQGLVEGVCYPA 401
GG A R RI ++A LF + TA + S+++ R+ G+ G P
Sbjct: 70 GGRLADRIGRKRILIVSVA------LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPN 123
Query: 402 VHGIWRFWAPPLERSRLATIAFCGTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLL 459
+ + P R ++ +CG G L I + +W +FY G LL
Sbjct: 124 LIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLL 181
>gnl|CDD|152598 pfam12163, HobA, DNA replication regulator. This family of
proteins is found exclusively in epsilon-proteobacteria.
Proteins in this family are approximately 180 amino
acids in length. The structure of HobA is a modified
Rossmann fold consisting of a five-stranded parallel
beta-sheet (beta1-5) flanked on one side by alpha-2,
alpha-3 and alpha-6 helices and alpha-4 and alpha-5 on
the other. The alpha-1 helix is extended away from and
has minimal interaction with the globular part of the
protein. Four monomers interact to form a tetrameric
molecule. Four calcium atoms bind to the tetramer and
these binding sites may have functional relevance. The
function of HobA is to regulate DNA replication and its
does this by binding to DNA-A, but the exact mechanism
of how this regulation occurs is purely speculative.
Length = 180
Score = 30.0 bits (68), Expect = 2.9
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 304 VSFETHYIYFYLGKVKHINWTVAQESAVDSSFFW 337
+SF YI++Y+GK +A+ D SF W
Sbjct: 105 ISFPNGYIFWYIGKSNDGRAKIAKSK--DDSFLW 136
>gnl|CDD|215349 PLN02647, PLN02647, acyl-CoA thioesterase.
Length = 437
Score = 30.5 bits (69), Expect = 3.2
Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 48 PNPPDDSNIPYASTGGLP----GGPSIDIPSPERPPL 80
IP ST P G SID S R PL
Sbjct: 3 FASNSPRPIPVVSTFASPSLSPGNGSIDAGSSTRKPL 39
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 30.0 bits (68), Expect = 4.5
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 2 KEKKKEKKEIWKLELEKYKKKFPTFFNGEEQELVMRL 38
+ KKK K I KL+++KY KK F ++++ ++L
Sbjct: 146 ESKKKNSKNIEKLKIKKYFKKCN-FKTNLKKDIKIKL 181
>gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional.
Length = 661
Score = 30.4 bits (69), Expect = 4.7
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 3 EKKKEKKEIWKLELEKYKKKFPTFFNGEEQELVMRL 38
EKKKE E WK KY FP E Q + R
Sbjct: 302 EKKKENYEAWKKRFAKYTAAFPK----EAQAIERRF 333
>gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional.
Length = 382
Score = 30.1 bits (68), Expect = 4.8
Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 29/132 (21%)
Query: 349 FASRYPANRIF---------GTAIACTSFLHLFVPTAIKLNPGSVIIVRICQGLVEGVCY 399
F+SRY I G A+ S +L + I R+ G G
Sbjct: 61 FSSRYSLKHILLFLVALCVIGNAMFTLSSSYLML-----------AIGRLVSGFPHG--- 106
Query: 400 PAVHGIWRFWAPPLERSRLATIAFCGTYAGI----VLGLPISAILTEHFSWEAMFYFYGC 455
A G+ + + T A G +G+ +LG+P+ L++ FSW F
Sbjct: 107 -AFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAV 165
Query: 456 MGLL-WYLCWLW 466
+ + W
Sbjct: 166 FNIAVLASIYFW 177
>gnl|CDD|144157 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate
binding domain. This family includes transketolase
enzymes EC:2.2.1.1. and also partially matches to
2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4.
Both these enzymes utilise thiamine pyrophosphate as a
cofactor, suggesting there may be common aspects in
their mechanism of catalysis.
Length = 333
Score = 29.7 bits (67), Expect = 5.3
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 2 KEKKKEKKEI---WKLELEKYKKKFPTFFNGEEQELVMRLN 39
KEK E + W YKK +P E E V RLN
Sbjct: 293 KEKVAEGAKAEAEWNELFAAYKKAYPE----EAAEFVRRLN 329
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and
metabolism].
Length = 663
Score = 29.9 bits (68), Expect = 6.5
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 2 KEKKKEKKEIWKLELEKYKKKFPTFFNGEEQELVMRLNTDYEEFQIPNPPDDSNIP 57
+E+ + + W YKKK+P E+ L L ++ F + +I
Sbjct: 300 EERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPKFEANGKSIA 355
>gnl|CDD|131765 TIGR02718, sider_RhtX_FptX, siderophore transporter, RhtX/FptX
family. RhtX from Sinorhizobium meliloti 2011 and FptX
from Pseudomonas aeruginosa appear to be single
polypeptide transporters, from the major facilitator
family (see pfam07690) for import of siderophores as a
means to import iron. This function was suggested by
proximity to siderophore biosynthesis genes and then
confirmed by study of knockout and heterologous
expression phenotypes [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 390
Score = 29.1 bits (65), Expect = 9.4
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 425 GTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLWL 467
G G G + +L F F C+ L +C LWL
Sbjct: 141 GVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.440
Gapped
Lambda K H
0.267 0.0816 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,035,147
Number of extensions: 3950493
Number of successful extensions: 4948
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4908
Number of HSP's successfully gapped: 79
Length of query: 744
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 640
Effective length of database: 6,324,786
Effective search space: 4047863040
Effective search space used: 4047863040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (27.9 bits)