RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15142
(744 letters)
>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 87
Score = 97.9 bits (244), Expect = 3e-25
Identities = 41/73 (56%), Positives = 55/73 (75%), Gaps = 2/73 (2%)
Query: 248 KST-MDADMQQKAIDATKEGLEKFNIEREVATYIKQYFENAYGPYWQCVVGRNFGSYVSF 306
K+ M +MQQ A+D + LEK+NIE+++A YIK+ F+ Y P W C+VGRNFGSYV+
Sbjct: 7 KNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTH 66
Query: 307 ET-HYIYFYLGKV 318
ET H+IYFYLG+V
Sbjct: 67 ETRHFIYFYLGQV 79
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 77.4 bits (189), Expect = 1e-15
Identities = 42/333 (12%), Positives = 91/333 (27%), Gaps = 8/333 (2%)
Query: 322 NWTVAQESAVDSSFFWGYLITQVPGGFFASRYPANRIF--GTAIACTSFLHLFVPTAIKL 379
++ S Y ++ G + R G +A L +
Sbjct: 55 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS 114
Query: 380 NPGSVIIVRICQGLVEGVCYPAVHGIWRFWAPPLERS-RLATIAFCGTYAGIVLGLPISA 438
+ + ++ G +G+ +P W ER ++ G + L
Sbjct: 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 174
Query: 439 ILTEHFSWEAMFYFYGCMGLLWYLCWLWLSFEKPCLHPTISGRELLYIEKSLGSSVQVAM 498
+ W A Y +L L + + P E +
Sbjct: 175 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQE 234
Query: 499 PTLATTPWREFAHSMPVYAIIVANFCRSWNFYLLVLFQASYLKSTFHLQIQETGFIGSLP 558
T + + ++ I +AN Y ++ + +YLK H + ++ + L
Sbjct: 235 LTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 294
Query: 559 HLLMTIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFFVVVAYTKSEVTATMA 618
G ++D + + +T + A + + +
Sbjct: 295 EYAGIPGTLLCGWMSDKVFRGNRGATGVF-----FMTLVTIATIVYWMNPAGNPTVDMIC 349
Query: 619 LCLGIEGRWTVVFLIAATVHFIGITFYAIFASG 651
+ + + V LI + A A+G
Sbjct: 350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 382
Score = 52.4 bits (124), Expect = 1e-07
Identities = 41/436 (9%), Positives = 87/436 (19%), Gaps = 43/436 (9%)
Query: 73 PSPERPPLRHIDKYVRPEIPCLSKRYTMATLTCVGFIISFGMKCNLGFAKLQF------E 126
P R P ID R R+ + G+ + ++ N A
Sbjct: 5 PHKARLPAAEIDPTYR------RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSR 58
Query: 127 GRTGFIGSLPHLLMTIVVPCGGMLADHLRKKGILSTTMVRKLFNC--------------- 171
G GF S + G ++D + L ++
Sbjct: 59 GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV 118
Query: 172 -------GGFGMEAFFFVVVAYTKSEVTATMALCLGVAFSGFAISGYNVNHL-------- 216
G+ + + + ++ G + L
Sbjct: 119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 178
Query: 217 DIAPRYASILMGMSNGIGTIDIFISYIGRRGKSTMDADMQQKAIDATKEGLEKFNIEREV 276
A + + + F + + K +
Sbjct: 179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAK 238
Query: 277 ATYIKQYFENAYGPYWQCVVGRNFGSYVSFETHYIYFYLGKVKHINWTVAQESAVDSSFF 336
+++ N Y + + + +
Sbjct: 239 QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 298
Query: 337 WGYLITQVPGGFFASRYPANRIFGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQGLVEG 396
+ R + + + NP +I I G +
Sbjct: 299 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY 358
Query: 397 VCYPAVHGIWRFWAPPLERSR-LATIAFCGTYAGIVLGLPISAILTEHFSWEAMFYFYGC 455
+ AP G G V I + F W+ F
Sbjct: 359 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG 418
Query: 456 MGLLWYLCWLWLSFEK 471
+L + + + +
Sbjct: 419 GSILAVILLIVVMIGE 434
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 51.3 bits (121), Expect = 2e-07
Identities = 34/359 (9%), Positives = 77/359 (21%), Gaps = 24/359 (6%)
Query: 129 TGFIGSLPHLLMTIVVPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFFVVVAYTK 188
TG I + L + P G+L+D L + L + F F +
Sbjct: 45 TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT--GMLVMFAPFFIFIFGPLLQYN 102
Query: 189 SEVTATMALCLGVAFSGFAISGYNVNHLDIAPRYASILMGMSNGIGTIDIFISYIGRRGK 248
V + + ++ R + I
Sbjct: 103 ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF 162
Query: 249 STMDADMQQKAIDA-------------------TKEGLEKFNIEREVATYIKQYFENAYG 289
+ + + T N + F
Sbjct: 163 TINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKL 222
Query: 290 PYWQCVVGRNFGSYVSFETHYIYFYLGKVKHINWTVAQESAVDSSFFWGYLITQVPGGFF 349
+ V +Y F+ + F+ V +
Sbjct: 223 WFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLI 282
Query: 350 ASRYPANRIFGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQGLVEGVCYPAVHGIWRFW 409
+R A S + A + V+I++
Sbjct: 283 INRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFKYITSQ 340
Query: 410 APPLERSRLATIAF-CGTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLWL 467
+ + + F ++ ++ + E ++ + G + L + L ++
Sbjct: 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
Score = 36.7 bits (83), Expect = 0.010
Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 9/126 (7%)
Query: 515 VYAIIVANFCRSWNFYLLVLFQASYLKSTFHLQIQETGFIGSLPHLLMTIVVPCGGMLAD 574
+ + F + F +L H+ +TG I + L + P G+L+D
Sbjct: 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD 68
Query: 575 HLRKKGILSTTMVRKLFNCGGFGMEAFFFVVVAYTKSEVTATMALCLGIEGRWTVVFLIA 634
L RK GM F + + L I G + F
Sbjct: 69 KLGL---------RKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFN 119
Query: 635 ATVHFI 640
A +
Sbjct: 120 AGAPAV 125
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 335
Score = 28.5 bits (63), Expect = 3.3
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 1 MKEKKKEKKEIWKLELEKYKKKFPTFFNGEEQELVMRLN 39
+ + E W +Y+KKFP EL RL+
Sbjct: 299 ILKPGVEANNKWNKLFSEYQKKFPE----LGAELARRLS 333
>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase
(SAMT) {Clarkia breweri [TaxId: 36903]}
Length = 359
Score = 28.3 bits (63), Expect = 3.8
Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 23/154 (14%)
Query: 255 MQQKAIDATKEGLEKFNIEREVATYIKQYFENA-YGPYWQCVVGRNFGSYVS-------- 305
+Q++ I TK E + A G C G N V+
Sbjct: 24 IQRQVISITKPITEAAITALYSGDTVTTRLAIADLG----CSSGPNALFAVTELIKTVEE 79
Query: 306 -------FETHYIYFYLGKVKHINW-TVAQESAVDSSFFWGYLITQVPGGFFASRYPANR 357
+ +L + ++ + + +++ I VPG F+ +P N
Sbjct: 80 LRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNT 139
Query: 358 I-FGTAIACTSFLHLFVPTAIKLNPGSVIIVRIC 390
+ F + +L VP I+ N G++ + C
Sbjct: 140 LHFIHSSYSLMWLSQ-VPIGIESNKGNIYMANTC 172
>d1y7qa1 a.28.3.2 (A:37-132) Zinc finger protein 174 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 26.7 bits (59), Expect = 3.9
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 443 HFSWEAMFYFYGCMGLLWYLCWLWLSFEKPCLHPTISGRELLYIEKSL 490
F ++ + + L LC WL +P LH ELL +E+ L
Sbjct: 15 RFCYQEVSGPQEALSQLRQLCRQWL---QPELHTKEQILELLVMEQFL 59
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 27.8 bits (61), Expect = 4.9
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 2 KEKKKEKKEIWKLELEKYKKKFPTFFNGEEQELVMRLN 39
KE + K+ W + Y K +P E E R+
Sbjct: 296 KEAGQAKESAWNEKFAAYAKAYPQ----EAAEFTRRMK 329
>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB
{Escherichia coli [TaxId: 562]}
Length = 149
Score = 26.9 bits (59), Expect = 5.6
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 2/104 (1%)
Query: 417 RLATIAFCGTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLWLSFEKPCLHP 476
R+A G A I P + + F G +
Sbjct: 35 RVALFGVLGA-ALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFATCDF 93
Query: 477 TISGRELLYIEKSLGSSVQVAMPTLATTPWREFAHSMPVYAIIV 520
+ E L ++K + V VA A W MP + + +
Sbjct: 94 MVRFPEWLPLDKWV-PQVFVASGDSAERQWDFLGLEMPQWLLGI 136
>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 369
Score = 27.4 bits (60), Expect = 6.9
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 1/87 (1%)
Query: 566 VPCGGMLADHLRKKGILSTTMVRKLFNCGGFGMEAFFFVVVAYTKSEVTATMA-LCLGIE 624
+ + G ++ E F V + S +A LGI
Sbjct: 161 TTIAKIQQSTVGNTGAFKDEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIG 220
Query: 625 GRWTVVFLIAATVHFIGITFYAIFASG 651
R +I+ T + I F I +
Sbjct: 221 DRHNDNIMISETGNLFHIDFGHILGNY 247
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 27.2 bits (59), Expect = 7.3
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 16 LEKYKKKFPTFFNGEEQELVMRLNTDYEE 44
L++ + + P F + E + L E
Sbjct: 222 LQEGQSEDPNFADSRESNFLKSLIDAVNE 250
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 27.5 bits (60), Expect = 7.8
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 4 KKKEKKEIWKLELEKYKKKFPTFFNGEEQE 33
K K+IW +L+ ++ + F + +
Sbjct: 729 LKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
{Leishmania mexicana mexicana [TaxId: 44270]}
Length = 336
Score = 26.8 bits (58), Expect = 9.5
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 2 KEKKKEKKEIWKLELEKYKKKFPTFFNGEEQELVMRLN 39
+K +++ W+ L KY FP E V ++
Sbjct: 299 IDKCSAEQKAWEELLAKYTAAFPA----EGAAFVAQMR 332
>d2olua2 e.3.1.1 (A:293-692) Penicillin-binding protein 2, PBP2
{Staphylococcus aureus [TaxId: 1280]}
Length = 400
Score = 27.1 bits (58), Expect = 9.9
Identities = 30/241 (12%), Positives = 51/241 (21%), Gaps = 14/241 (5%)
Query: 244 GRRGKSTMDADMQQKAIDATKEGLEKFNIEREVA------------TYIKQYFENAYGPY 291
G + + MD D+Q+ + G N +++V
Sbjct: 36 GIKIYTNMDKDVQKTLQNDVDNGSFYKNKDQQVGATILDSKTGGLVAISGGRDFKDVVNR 95
Query: 292 WQCVVGRNFGSYVSFETHYIYFYLGKVKHINWTVAQESAVDSSFFWGYLITQVPGGFFAS 351
Q GS S + Y + A +
Sbjct: 96 NQATDPHPTGS--SLKPFLAYGPAIENMKWATNHAIQDESSYQVDGSTFRNYDTKSHGTV 153
Query: 352 RYPANRIFGTAIACTSFLHLFVPTAIKLNPGSVIIVRICQGLVEGVCYPAVHGIWRFWAP 411
I A P + + G ++P
Sbjct: 154 SIYDALRQSFNIPALKAWQSVKQNAGNDAPKKFAAKLGLNYEGDIGPSEVLGGSASEFSP 213
Query: 412 PLERSRLATIAFCGTYAGIVLGLPISAILTEHFSWEAMFYFYGCMGLLWYLCWLWLSFEK 471
S A IA GTY + E ++ + + L + K
Sbjct: 214 TQLASAFAAIANGGTYNNAHSIQKVVTRDGETIEYDHTSHKAMSDYTAYMLAEMLKGTFK 273
Query: 472 P 472
P
Sbjct: 274 P 274
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.440
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,932,918
Number of extensions: 145541
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 23
Length of query: 744
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 652
Effective length of database: 1,144,436
Effective search space: 746172272
Effective search space used: 746172272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (25.5 bits)