Query psy15143
Match_columns 149
No_of_seqs 118 out of 996
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 21:44:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1.4E-34 3.1E-39 277.4 5.5 90 58-148 426-516 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 8E-34 1.7E-38 265.3 6.5 90 58-148 460-549 (821)
3 cd01383 MYSc_type_VIII Myosin 100.0 9.4E-34 2E-38 260.5 6.8 91 57-148 362-452 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 1.3E-33 2.8E-38 259.3 7.5 91 57-148 359-449 (671)
5 cd01387 MYSc_type_XV Myosin mo 100.0 1.2E-33 2.5E-38 259.8 6.9 90 58-148 359-448 (677)
6 cd01382 MYSc_type_VI Myosin mo 100.0 1.6E-33 3.4E-38 260.3 6.7 90 58-148 395-484 (717)
7 cd01384 MYSc_type_XI Myosin mo 100.0 1.7E-33 3.7E-38 258.7 6.8 91 57-148 364-454 (674)
8 cd01378 MYSc_type_I Myosin mot 100.0 2E-33 4.3E-38 258.1 6.7 90 57-147 363-453 (674)
9 cd01385 MYSc_type_IX Myosin mo 100.0 2.3E-33 5.1E-38 258.4 6.6 90 58-148 374-464 (692)
10 cd01379 MYSc_type_III Myosin m 100.0 2.4E-33 5.2E-38 256.9 6.6 90 58-148 371-460 (653)
11 cd01377 MYSc_type_II Myosin mo 100.0 6.3E-33 1.4E-37 255.5 7.1 91 57-148 371-462 (693)
12 cd01380 MYSc_type_V Myosin mot 100.0 5.8E-33 1.3E-37 255.6 6.8 90 57-148 365-454 (691)
13 smart00242 MYSc Myosin. Large 100.0 2.3E-32 5E-37 251.0 6.8 91 57-148 366-456 (677)
14 cd00124 MYSc Myosin motor doma 100.0 9.4E-32 2E-36 246.9 6.5 91 57-148 359-449 (679)
15 PF00063 Myosin_head: Myosin h 100.0 2.4E-31 5.3E-36 243.2 5.8 91 57-148 361-452 (689)
16 cd01386 MYSc_type_XVIII Myosin 100.0 1.6E-30 3.4E-35 241.9 6.7 90 58-148 371-481 (767)
17 KOG0161|consensus 100.0 4.1E-30 8.9E-35 253.8 4.0 91 56-148 444-535 (1930)
18 KOG0164|consensus 100.0 1.3E-29 2.9E-34 231.9 4.3 89 58-147 373-461 (1001)
19 KOG0163|consensus 99.9 1.4E-28 3E-33 226.4 6.0 92 56-148 447-538 (1259)
20 KOG0162|consensus 99.9 3.8E-28 8.1E-33 222.9 3.4 89 57-146 380-469 (1106)
21 KOG0160|consensus 99.9 4.6E-26 9.9E-31 213.0 5.2 89 58-148 366-454 (862)
22 KOG4229|consensus 99.9 1.2E-23 2.6E-28 200.4 4.7 89 59-148 426-514 (1062)
23 COG5019 CDC3 Septin family pro 61.8 5.2 0.00011 35.6 1.9 35 59-95 81-117 (373)
24 PF10500 SR-25: Nuclear RNA-sp 61.7 12 0.00025 31.2 3.8 13 98-110 156-168 (225)
25 KOG2655|consensus 50.2 14 0.00031 32.7 2.7 34 61-96 80-115 (366)
26 KOG1547|consensus 49.2 16 0.00035 31.5 2.8 54 60-114 104-158 (336)
27 cd01850 CDC_Septin CDC/Septin. 48.8 21 0.00045 29.8 3.3 34 61-95 64-98 (276)
28 PF00735 Septin: Septin; Inte 40.1 31 0.00067 29.0 3.1 35 61-96 64-99 (281)
29 COG2153 ElaA Predicted acyltra 31.5 23 0.00051 27.9 1.0 30 85-114 116-145 (155)
30 KOG2304|consensus 26.6 67 0.0014 27.6 2.9 37 56-99 187-223 (298)
31 cd00166 SAM Sterile alpha moti 25.8 73 0.0016 19.3 2.4 32 87-118 3-34 (63)
32 PF08496 Peptidase_S49_N: Pept 25.3 1.4E+02 0.003 23.3 4.3 13 57-69 95-107 (155)
33 PF09084 NMT1: NMT1/THI5 like; 24.0 70 0.0015 24.3 2.4 37 96-132 5-41 (216)
34 PF14551 MCM_N: MCM N-terminal 22.9 19 0.00042 25.2 -0.8 21 124-144 46-66 (121)
35 cd06481 ACD_HspB9_like Alpha c 22.2 49 0.0011 22.8 1.1 19 53-71 1-19 (87)
36 KOG4030|consensus 21.5 13 0.00028 29.9 -2.1 32 115-146 161-197 (197)
37 PF04727 ELMO_CED12: ELMO/CED- 21.5 36 0.00078 25.9 0.4 30 108-140 40-69 (170)
38 KOG0388|consensus 20.2 1.6E+02 0.0034 29.5 4.3 50 54-104 479-528 (1185)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.4e-34 Score=277.37 Aligned_cols=90 Identities=46% Similarity=0.782 Sum_probs=86.7
Q ss_pred cCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhc-CCCcc
Q psy15143 58 RKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGL 136 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~-kp~GL 136 (149)
..+|||||||||||+|+ .|||||||||||||+|||+|++|+|..||++|..|||+|.+|+|.||++|+|||+. .|.||
T Consensus 426 ~~~fIGVLDIyGFEiFE-kNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GI 504 (1463)
T COG5022 426 ASNFIGVLDIYGFEIFE-KNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGI 504 (1463)
T ss_pred cccceeEEeecchhhhc-cCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCch
Confidence 46899999999999999 99999999999999999999999999999999999999999999999999999997 47899
Q ss_pred cccchhhhcccc
Q psy15143 137 LCVLDDQAKAVI 148 (149)
Q Consensus 137 LsILDEEc~fp~ 148 (149)
|++|||||.+|-
T Consensus 505 lslLDEE~~~p~ 516 (1463)
T COG5022 505 LSLLDEECVMPH 516 (1463)
T ss_pred HhhhcHHhcCCC
Confidence 999999999983
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=8e-34 Score=265.28 Aligned_cols=90 Identities=33% Similarity=0.413 Sum_probs=87.8
Q ss_pred cCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCccc
Q psy15143 58 RKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GLL 137 (149)
..++||||||||||+|+ .|||||||||||||+||++|++++|..||++|.+|||+|..|+|.||++|||||+++|.|||
T Consensus 460 ~~~~IGiLDI~GFE~f~-~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl 538 (821)
T PTZ00014 460 FKVFIGMLDIFGFEVFK-NNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVL 538 (821)
T ss_pred cCceEEEEecccccccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHH
Confidence 46799999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcccc
Q psy15143 138 CVLDDQAKAVI 148 (149)
Q Consensus 138 sILDEEc~fp~ 148 (149)
+||||||++|.
T Consensus 539 ~lLDEec~~p~ 549 (821)
T PTZ00014 539 SILEDQCLAPG 549 (821)
T ss_pred HHHHHHhCCCC
Confidence 99999999985
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=9.4e-34 Score=260.46 Aligned_cols=91 Identities=46% Similarity=0.748 Sum_probs=88.1
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCcc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 136 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GL 136 (149)
....+||||||||||+|+ .|||||||||||||+||++|++++|..||++|.+|||+|..|+|.||++|||||+++|.||
T Consensus 362 ~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gi 440 (677)
T cd01383 362 RTGRSISILDIYGFESFD-KNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGL 440 (677)
T ss_pred cccceEEEeeccccccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccH
Confidence 346799999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcccc
Q psy15143 137 LCVLDDQAKAVI 148 (149)
Q Consensus 137 LsILDEEc~fp~ 148 (149)
|+||||||++|.
T Consensus 441 l~lLdee~~~p~ 452 (677)
T cd01383 441 LSLLDEESTFPN 452 (677)
T ss_pred HHHhHHHHcCCC
Confidence 999999999985
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.3e-33 Score=259.33 Aligned_cols=91 Identities=44% Similarity=0.692 Sum_probs=88.5
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCcc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 136 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GL 136 (149)
....+||||||||||+|+ .|||||||||||||+||++|++++|..|+++|.+|||+|.+|+|.||++|||||+++|.||
T Consensus 359 ~~~~~IgiLDIfGFE~f~-~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gi 437 (671)
T cd01381 359 QSRNSIGVLDIFGFENFD-VNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNI 437 (671)
T ss_pred cccceEEEEecCCcccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCc
Confidence 457899999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcccc
Q psy15143 137 LCVLDDQAKAVI 148 (149)
Q Consensus 137 LsILDEEc~fp~ 148 (149)
|++|||||++|.
T Consensus 438 l~lLDee~~~p~ 449 (671)
T cd01381 438 MSLIDEESKFPK 449 (671)
T ss_pred ceechHhhcCCC
Confidence 999999999985
No 5
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.2e-33 Score=259.81 Aligned_cols=90 Identities=47% Similarity=0.645 Sum_probs=87.6
Q ss_pred cCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCccc
Q psy15143 58 RKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GLL 137 (149)
...+||||||||||+|+ .|||||||||||||+||++|++++|..+|++|.+|||+|..|+|.||++|||||+++|.|||
T Consensus 359 ~~~~IgILDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil 437 (677)
T cd01387 359 DTLSIAILDIYGFEDLS-FNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGIL 437 (677)
T ss_pred CCceEEEEecCccccCC-CCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchH
Confidence 35799999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcccc
Q psy15143 138 CVLDDQAKAVI 148 (149)
Q Consensus 138 sILDEEc~fp~ 148 (149)
+||||||++|.
T Consensus 438 ~lLdee~~~p~ 448 (677)
T cd01387 438 RILDDQCCFPQ 448 (677)
T ss_pred HHHHHHhcCCC
Confidence 99999999985
No 6
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.98 E-value=1.6e-33 Score=260.34 Aligned_cols=90 Identities=37% Similarity=0.643 Sum_probs=87.7
Q ss_pred cCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCccc
Q psy15143 58 RKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GLL 137 (149)
..++||||||||||+|+ .|||||||||||||+||++|++++|..|+++|.+|||+|.+++|.||++|||||+++|.|||
T Consensus 395 ~~~~IgiLDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil 473 (717)
T cd01382 395 SSNFIGVLDIAGFEYFE-HNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGIL 473 (717)
T ss_pred CCcEEEEEeccccccCC-CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHH
Confidence 46799999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcccc
Q psy15143 138 CVLDDQAKAVI 148 (149)
Q Consensus 138 sILDEEc~fp~ 148 (149)
++|||||++|.
T Consensus 474 ~lLDee~~~p~ 484 (717)
T cd01382 474 DILDEENRLPQ 484 (717)
T ss_pred HHhHHHhcCCC
Confidence 99999999984
No 7
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.98 E-value=1.7e-33 Score=258.70 Aligned_cols=91 Identities=45% Similarity=0.667 Sum_probs=88.2
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCcc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 136 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GL 136 (149)
...++||||||||||+|+ .|||||||||||||+||++|++++|..||++|.+|||+|+.|+|.||++|||||+++|.||
T Consensus 364 ~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gi 442 (674)
T cd01384 364 DSKSLIGVLDIYGFESFK-TNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGI 442 (674)
T ss_pred CCCeEEEEEecccccccC-cCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccH
Confidence 356899999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcccc
Q psy15143 137 LCVLDDQAKAVI 148 (149)
Q Consensus 137 LsILDEEc~fp~ 148 (149)
|++|||||++|.
T Consensus 443 l~lLdee~~~p~ 454 (674)
T cd01384 443 IALLDEACMFPK 454 (674)
T ss_pred HHHHHHHHcCCC
Confidence 999999999984
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.98 E-value=2e-33 Score=258.13 Aligned_cols=90 Identities=38% Similarity=0.655 Sum_probs=87.9
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhc-CCCc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNG 135 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~-kp~G 135 (149)
...++||||||||||+|+ .|||||||||||||+||++|++++|..++++|.+|||+|..|+|.||++|||||++ +|.|
T Consensus 363 ~~~~~IgILDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~G 441 (674)
T cd01378 363 GKNKVIGVLDIYGFEIFQ-KNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPG 441 (674)
T ss_pred cCcceEEEEecccccccc-cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcc
Confidence 457899999999999999 99999999999999999999999999999999999999999999999999999999 8999
Q ss_pred ccccchhhhccc
Q psy15143 136 LLCVLDDQAKAV 147 (149)
Q Consensus 136 LLsILDEEc~fp 147 (149)
||++|||||++|
T Consensus 442 il~lLdee~~~p 453 (674)
T cd01378 442 IFSILDDVCATP 453 (674)
T ss_pred hHHHHHHHHcCC
Confidence 999999999998
No 9
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.98 E-value=2.3e-33 Score=258.35 Aligned_cols=90 Identities=50% Similarity=0.812 Sum_probs=87.4
Q ss_pred cCcceeecccccccccccc-hhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCcc
Q psy15143 58 RKNYTKTNICHGEQTLLTS-VSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 136 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~-NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GL 136 (149)
...+||||||||||+|+ . |||||||||||||+||++|++++|..||++|.+|||+|++|+|.||++|||||+++|.||
T Consensus 374 ~~~~IgiLDI~GFE~f~-~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gi 452 (692)
T cd01385 374 SGLSIGVLDIFGFEDFG-RCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGL 452 (692)
T ss_pred cceEEEEEecCccccCC-CCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccH
Confidence 45799999999999999 8 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcccc
Q psy15143 137 LCVLDDQAKAVI 148 (149)
Q Consensus 137 LsILDEEc~fp~ 148 (149)
|++|||||++|.
T Consensus 453 l~lLdee~~~p~ 464 (692)
T cd01385 453 LYLLDEESNFPH 464 (692)
T ss_pred HHHhHHHhcCCC
Confidence 999999999984
No 10
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.98 E-value=2.4e-33 Score=256.93 Aligned_cols=90 Identities=42% Similarity=0.663 Sum_probs=87.4
Q ss_pred cCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCccc
Q psy15143 58 RKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GLL 137 (149)
...+||||||||||+|+ .|||||||||||||+||++|++++|..|+++|.+|||+|..++|.||++|||||+++|.|||
T Consensus 371 ~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil 449 (653)
T cd01379 371 DQLNVGILDIFGFENFK-KNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLL 449 (653)
T ss_pred ccceEEEEeccccccCC-CCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHH
Confidence 45799999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcccc
Q psy15143 138 CVLDDQAKAVI 148 (149)
Q Consensus 138 sILDEEc~fp~ 148 (149)
+||||||++|.
T Consensus 450 ~lLdee~~~~~ 460 (653)
T cd01379 450 ALLDEESRFPQ 460 (653)
T ss_pred HHHHHHhcCCC
Confidence 99999999984
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.97 E-value=6.3e-33 Score=255.48 Aligned_cols=91 Identities=42% Similarity=0.698 Sum_probs=87.9
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCccccccc-CChhhHHHHhhcCCCc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNG 135 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~-~dN~~~ldLI~~kp~G 135 (149)
...++||||||||||+|+ .|||||||||||||+||++|++++|..|+++|.+|||+|+.++| .||++|||||+++|.|
T Consensus 371 ~~~~~IgiLDIfGFE~f~-~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~G 449 (693)
T cd01377 371 QRAYFIGVLDIAGFEIFD-FNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMG 449 (693)
T ss_pred CCCceEEEEecccccccC-CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCc
Confidence 467899999999999999 99999999999999999999999999999999999999999999 5999999999999999
Q ss_pred ccccchhhhcccc
Q psy15143 136 LLCVLDDQAKAVI 148 (149)
Q Consensus 136 LLsILDEEc~fp~ 148 (149)
||++|||||++|.
T Consensus 450 il~lLdee~~~~~ 462 (693)
T cd01377 450 ILSLLDEECVFPK 462 (693)
T ss_pred hHhhhhHHhcCCC
Confidence 9999999999984
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.97 E-value=5.8e-33 Score=255.65 Aligned_cols=90 Identities=47% Similarity=0.775 Sum_probs=86.7
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCcc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 136 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GL 136 (149)
...++||||||||||+|+ .|||||||||||||+||++|++++|..|+++|.+|||+|++++|.||++|||||++ |.||
T Consensus 365 ~~~~~IgiLDI~GFE~f~-~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gi 442 (691)
T cd01380 365 KQTSFIGVLDIYGFETFE-KNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGI 442 (691)
T ss_pred CccceEEEEecCcccccC-CCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCch
Confidence 457899999999999999 99999999999999999999999999999999999999999999999999999996 6899
Q ss_pred cccchhhhcccc
Q psy15143 137 LCVLDDQAKAVI 148 (149)
Q Consensus 137 LsILDEEc~fp~ 148 (149)
|++|||||++|.
T Consensus 443 l~lLdee~~~p~ 454 (691)
T cd01380 443 LSLLDEECRLPK 454 (691)
T ss_pred HHHhHHhhcCCC
Confidence 999999999984
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.97 E-value=2.3e-32 Score=251.03 Aligned_cols=91 Identities=47% Similarity=0.796 Sum_probs=88.7
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCcc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 136 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GL 136 (149)
...++||||||||||+|+ .|||||||||||||+||++|++++|..++++|.+|||+|+.++|.||++|||||+++|.||
T Consensus 366 ~~~~~IgiLDifGFE~f~-~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gi 444 (677)
T smart00242 366 GSTYFIGVLDIYGFEIFE-VNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGI 444 (677)
T ss_pred CCceEEEEEecccccccc-cCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccH
Confidence 467899999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcccc
Q psy15143 137 LCVLDDQAKAVI 148 (149)
Q Consensus 137 LsILDEEc~fp~ 148 (149)
|++|||||++|.
T Consensus 445 l~lLdee~~~~~ 456 (677)
T smart00242 445 LSLLDEECRFPK 456 (677)
T ss_pred HHHHHHHhcCCC
Confidence 999999999985
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.97 E-value=9.4e-32 Score=246.92 Aligned_cols=91 Identities=48% Similarity=0.783 Sum_probs=88.4
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCcc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 136 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GL 136 (149)
....+||||||||||+|+ .|||||||||||||+||++|++++|..++++|.+|||.|+.++|.||++|||||+++|.||
T Consensus 359 ~~~~~IgiLDi~GFE~f~-~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi 437 (679)
T cd00124 359 GRSLFIGILDIFGFEIFE-KNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGL 437 (679)
T ss_pred CCCceeeEEeccccccCC-CCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcH
Confidence 457899999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcccc
Q psy15143 137 LCVLDDQAKAVI 148 (149)
Q Consensus 137 LsILDEEc~fp~ 148 (149)
|++|||||++|.
T Consensus 438 ~~lLdee~~~~~ 449 (679)
T cd00124 438 LSLLDEECLFPK 449 (679)
T ss_pred HHHHHHHhCCCC
Confidence 999999999985
No 15
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.97 E-value=2.4e-31 Score=243.20 Aligned_cols=91 Identities=47% Similarity=0.795 Sum_probs=82.0
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCccccccc-CChhhHHHHhhcCCCc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNG 135 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~-~dN~~~ldLI~~kp~G 135 (149)
...++||||||||||+|. .|+|||||||||||+||++|++++|..++++|.+|||.|+.++| .||++|||||+++|.|
T Consensus 361 ~~~~~IgILDi~GFE~~~-~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~G 439 (689)
T PF00063_consen 361 ENSSSIGILDIFGFENFS-VNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKG 439 (689)
T ss_dssp S-SEEEEEEEEE-B---S-SB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTS
T ss_pred cccccCcccCcccccccc-ccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCC
Confidence 578899999999999999 99999999999999999999999999999999999999999999 9999999999999999
Q ss_pred ccccchhhhcccc
Q psy15143 136 LLCVLDDQAKAVI 148 (149)
Q Consensus 136 LLsILDEEc~fp~ 148 (149)
||+||||||++|.
T Consensus 440 il~lLdee~~~~~ 452 (689)
T PF00063_consen 440 ILSLLDEECLLPR 452 (689)
T ss_dssp HHHHHHHHCTSTT
T ss_pred HHHHhhhhhhccc
Confidence 9999999999985
No 16
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.96 E-value=1.6e-30 Score=241.86 Aligned_cols=90 Identities=30% Similarity=0.383 Sum_probs=83.1
Q ss_pred cCcceeecccccccccccc------hhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCccccccc-CChhhHHHHhh
Q psy15143 58 RKNYTKTNICHGEQTLLTS------VSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVE 130 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~------NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~-~dN~~~ldLI~ 130 (149)
...+||||||||||+|+ . |||||||||||||+||++|++++|..||++|.+|||+|+.+++ .||++|||||+
T Consensus 371 ~~~~IgiLDIfGFE~f~-~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid 449 (767)
T cd01386 371 SIASIMLVDTPGFQNPA-SQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVD 449 (767)
T ss_pred CCcEEEEEecccccccc-cccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhh
Confidence 35789999999999997 5 8999999999999999999999999999999999999986555 79999999999
Q ss_pred cCC--------------Ccccccchhhhcccc
Q psy15143 131 GKP--------------NGLLCVLDDQAKAVI 148 (149)
Q Consensus 131 ~kp--------------~GLLsILDEEc~fp~ 148 (149)
.+| .|||+||||||++|.
T Consensus 450 ~~p~~~~~~~~~~~~~~~GIl~lLDEec~~p~ 481 (767)
T cd01386 450 QAPQQVVVPAGLRAEDARGLLWLLDEEALVPG 481 (767)
T ss_pred cccccccccchhhccCCCchhhhhhHhhcCCC
Confidence 865 599999999999985
No 17
>KOG0161|consensus
Probab=99.96 E-value=4.1e-30 Score=253.79 Aligned_cols=91 Identities=43% Similarity=0.732 Sum_probs=87.8
Q ss_pred cccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCccccccc-CChhhHHHHhhcCCC
Q psy15143 56 RRRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPN 134 (149)
Q Consensus 56 k~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~-~dN~~~ldLI~~kp~ 134 (149)
....+|||||||+|||||+ .||||||||||+||+||++|++++|..+|++|..|||.|.+|+| .|-+||+|||+ .|+
T Consensus 444 ~~~~~fIgvLDiaGFEIfe-~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIE-kp~ 521 (1930)
T KOG0161|consen 444 QQRDYFIGVLDIAGFEIFE-FNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIE-KPM 521 (1930)
T ss_pred cccCCcceeeeeccccccC-cCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHh-chh
Confidence 5788999999999999999 99999999999999999999999999999999999999999999 89999999999 577
Q ss_pred cccccchhhhcccc
Q psy15143 135 GLLCVLDDQAKAVI 148 (149)
Q Consensus 135 GLLsILDEEc~fp~ 148 (149)
||||+|||||+||-
T Consensus 522 Gi~slLdEEc~~Pk 535 (1930)
T KOG0161|consen 522 GILSLLDEECVVPK 535 (1930)
T ss_pred hHHHHHHHHHhcCC
Confidence 99999999999994
No 18
>KOG0164|consensus
Probab=99.95 E-value=1.3e-29 Score=231.88 Aligned_cols=89 Identities=38% Similarity=0.623 Sum_probs=86.5
Q ss_pred cCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCccc
Q psy15143 58 RKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GLL 137 (149)
+...||+|||||||+|+ .|||||||||||||.|||+|++.++.+|||||.+|||+|.+|+|.+|..++||++.+..|||
T Consensus 373 ~~~Vigvldiygfeif~-~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIl 451 (1001)
T KOG0164|consen 373 GNTVIGVLDIYGFEIFQ-DNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGIL 451 (1001)
T ss_pred CceEEEEEEeeeEEeec-CCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchh
Confidence 46789999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccc
Q psy15143 138 CVLDDQAKAV 147 (149)
Q Consensus 138 sILDEEc~fp 147 (149)
+||||||+-|
T Consensus 452 ailDe~Cl~~ 461 (1001)
T KOG0164|consen 452 AILDEACLRP 461 (1001)
T ss_pred hhhhHHhcCC
Confidence 9999999876
No 19
>KOG0163|consensus
Probab=99.95 E-value=1.4e-28 Score=226.36 Aligned_cols=92 Identities=40% Similarity=0.662 Sum_probs=89.5
Q ss_pred cccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCc
Q psy15143 56 RRRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNG 135 (149)
Q Consensus 56 k~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~G 135 (149)
+...+|||||||+|||.|. +|||||||||||||.||+||+++++..||+.|..||+.++.|.|.||++||+||+.+..|
T Consensus 447 e~St~fiGVLDiAGFEyf~-~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~G 525 (1259)
T KOG0163|consen 447 EKSTFFIGVLDIAGFEYFA-VNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNG 525 (1259)
T ss_pred ccccceeEEEeeccceeee-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccc
Confidence 4578999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhcccc
Q psy15143 136 LLCVLDDQAKAVI 148 (149)
Q Consensus 136 LLsILDEEc~fp~ 148 (149)
||+|||||+.+|.
T Consensus 526 ifdlLDEEaklP~ 538 (1259)
T KOG0163|consen 526 IFDLLDEEAKLPK 538 (1259)
T ss_pred hhhhhhhhccCCC
Confidence 9999999999995
No 20
>KOG0162|consensus
Probab=99.94 E-value=3.8e-28 Score=222.87 Aligned_cols=89 Identities=34% Similarity=0.589 Sum_probs=85.0
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhc-CCCc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNG 135 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~-kp~G 135 (149)
+...+||||||||||+|+ +||||||||||+||.||+.|++.++..|||+|.+|||.|.+|.|.||.-++|||+. .|.|
T Consensus 380 ~~~~sIGiLDIYGFEIFe-~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPG 458 (1106)
T KOG0162|consen 380 SEEYSIGILDIYGFEIFE-NNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPG 458 (1106)
T ss_pred ccccceeeEEeeeeeecc-cCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCch
Confidence 457899999999999999 99999999999999999999999999999999999999999999999999999998 5889
Q ss_pred ccccchhhhcc
Q psy15143 136 LLCVLDDQAKA 146 (149)
Q Consensus 136 LLsILDEEc~f 146 (149)
|+++|||.|..
T Consensus 459 ims~ldD~~At 469 (1106)
T KOG0162|consen 459 IMSALDDVCAT 469 (1106)
T ss_pred HHHHHHHHHHH
Confidence 99999999863
No 21
>KOG0160|consensus
Probab=99.92 E-value=4.6e-26 Score=212.97 Aligned_cols=89 Identities=48% Similarity=0.762 Sum_probs=86.4
Q ss_pred cCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCccc
Q psy15143 58 RKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GLL 137 (149)
...+||||||||||.|+ .|+|||||||||||+||+.|++|+|..+|++|..|+|+|..++|.||++|+|+|+. |.|++
T Consensus 366 ~~~~igVLDiYgFEsF~-~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~ 443 (862)
T KOG0160|consen 366 AERFIGVLDIYGFESFE-VNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGIL 443 (862)
T ss_pred ccceeeeehcccccccc-cCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchh
Confidence 46899999999999999 99999999999999999999999999999999999999999999999999999997 99999
Q ss_pred ccchhhhcccc
Q psy15143 138 CVLDDQAKAVI 148 (149)
Q Consensus 138 sILDEEc~fp~ 148 (149)
+||||||.||.
T Consensus 444 ~Llde~c~lp~ 454 (862)
T KOG0160|consen 444 ALLDEECMLPK 454 (862)
T ss_pred hccchhccCCC
Confidence 99999999984
No 22
>KOG4229|consensus
Probab=99.88 E-value=1.2e-23 Score=200.39 Aligned_cols=89 Identities=47% Similarity=0.755 Sum_probs=86.8
Q ss_pred CcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCcccc
Q psy15143 59 KNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 138 (149)
Q Consensus 59 ~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GLLs 138 (149)
...||||||||||+|. .|+|||+|||||||+||.||++++|..|+++|..|+|.|..+.|.||..|+|||..+|+|||.
T Consensus 426 ~~~IgiLdiFgfE~f~-~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~ 504 (1062)
T KOG4229|consen 426 ILSIGILDIFGFENFE-RNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILS 504 (1062)
T ss_pred cceeehhhhhcccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhh
Confidence 5789999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccc
Q psy15143 139 VLDDQAKAVI 148 (149)
Q Consensus 139 ILDEEc~fp~ 148 (149)
+||||+.||.
T Consensus 505 liDees~fP~ 514 (1062)
T KOG4229|consen 505 LIDEESRFPK 514 (1062)
T ss_pred eecccCcCCc
Confidence 9999999985
No 23
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=61.78 E-value=5.2 Score=35.57 Aligned_cols=35 Identities=9% Similarity=0.221 Sum_probs=23.2
Q ss_pred Ccceeecccccccccccch--hhhhHhhhhhhhHHHHHH
Q psy15143 59 KNYTKTNICHGEQTLLTSV--SFEQLCINYANEHLQYYF 95 (149)
Q Consensus 59 ~~~I~ILDIfGFE~f~~~N--sfEQLcINyaNErLq~~f 95 (149)
.-.+.|+|++||-.+- .| +| +-.++|..++..+|+
T Consensus 81 ~~~l~vIDtpGfGD~i-dNs~~w-e~I~~yI~~q~d~yl 117 (373)
T COG5019 81 HLNLTVIDTPGFGDFI-DNSKCW-EPIVDYIDDQFDQYL 117 (373)
T ss_pred EEEEEEeccCCccccc-cccccH-HHHHHHHHHHHHHHH
Confidence 4568999999999886 44 34 334466666655544
No 24
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=61.70 E-value=12 Score=31.24 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=7.7
Q ss_pred hhhhhhHhhhhhc
Q psy15143 98 HVFQYEQEEYNKE 110 (149)
Q Consensus 98 ~if~~eqeeY~~E 110 (149)
.+-.+..|||...
T Consensus 156 am~PmTkEEyear 168 (225)
T PF10500_consen 156 AMAPMTKEEYEAR 168 (225)
T ss_pred hcCCCCHHHHHHH
Confidence 3456667777543
No 25
>KOG2655|consensus
Probab=50.17 E-value=14 Score=32.75 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=24.7
Q ss_pred ceeecccccccccccch--hhhhHhhhhhhhHHHHHHH
Q psy15143 61 YTKTNICHGEQTLLTSV--SFEQLCINYANEHLQYYFN 96 (149)
Q Consensus 61 ~I~ILDIfGFE~f~~~N--sfEQLcINyaNErLq~~f~ 96 (149)
.++|+|++||-.+- .| +| +-.++|..++..+|+.
T Consensus 80 ~LtvidtPGfGD~v-dns~~w-~pi~~yi~~q~~~yl~ 115 (366)
T KOG2655|consen 80 NLTVIDTPGFGDAV-DNSNCW-RPIVNYIDSQFDQYLD 115 (366)
T ss_pred eeEEeccCCCcccc-cccccc-hhhhHHHHHHHHHHHh
Confidence 46789999999876 44 34 4566888888777763
No 26
>KOG1547|consensus
Probab=49.23 E-value=16 Score=31.52 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=35.7
Q ss_pred cceeeccccccccccc-chhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcc
Q psy15143 60 NYTKTNICHGEQTLLT-SVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRW 114 (149)
Q Consensus 60 ~~I~ILDIfGFE~f~~-~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w 114 (149)
--+.|+|++||-.+-. .|.+| -.+-|.||+..+|...-+...-...-.+-.+.+
T Consensus 104 lkltviDTPGfGDqInN~ncWe-PI~kyIneQye~yL~eElni~R~kripDTRVHc 158 (336)
T KOG1547|consen 104 LKLTVIDTPGFGDQINNDNCWE-PIEKYINEQYEQYLREELNIAREKRIPDTRVHC 158 (336)
T ss_pred EEEEEecCCCcccccCccchhH-HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEE
Confidence 3578999999988752 44564 456899998888776555544444444455544
No 27
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=48.75 E-value=21 Score=29.76 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=23.7
Q ss_pred ceeecccccccccccchh-hhhHhhhhhhhHHHHHH
Q psy15143 61 YTKTNICHGEQTLLTSVS-FEQLCINYANEHLQYYF 95 (149)
Q Consensus 61 ~I~ILDIfGFE~f~~~Ns-fEQLcINyaNErLq~~f 95 (149)
.+.|+|++||..+. .|+ --+..++|.++++..|.
T Consensus 64 ~l~iiDTpGfgd~~-~~~~~~~~i~~yi~~q~~~~l 98 (276)
T cd01850 64 KLTVIDTPGFGDNI-NNSDCWKPIVDYIDDQFDQYL 98 (276)
T ss_pred EEEEEecCCccccc-cchhhHHHHHHHHHHHHHHHH
Confidence 47899999998876 432 22456677777776655
No 28
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=40.06 E-value=31 Score=28.97 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=22.7
Q ss_pred ceeecccccccccccchhh-hhHhhhhhhhHHHHHHH
Q psy15143 61 YTKTNICHGEQTLLTSVSF-EQLCINYANEHLQYYFN 96 (149)
Q Consensus 61 ~I~ILDIfGFE~f~~~Nsf-EQLcINyaNErLq~~f~ 96 (149)
.+.|+|++||...- .|+. -+..++|..+++..|+.
T Consensus 64 ~LtiiDTpGfGd~i-~n~~~~~~I~~yI~~qf~~~l~ 99 (281)
T PF00735_consen 64 NLTIIDTPGFGDNI-DNSDCWEPIVDYIESQFDSYLE 99 (281)
T ss_dssp EEEEEEEC-CSSSS-THCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCccccc-cchhhhHHHHHHHHHHHHHHHH
Confidence 47789999998765 4432 24566888777766543
No 29
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=31.49 E-value=23 Score=27.89 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=26.3
Q ss_pred hhhhhHHHHHHHHhhhhhhHhhhhhcCCcc
Q psy15143 85 NYANEHLQYYFNQHVFQYEQEEYNKEGIRW 114 (149)
Q Consensus 85 NyaNErLq~~f~~~if~~eqeeY~~EgI~w 114 (149)
--|++.||.||.+.-|....++|.++||+-
T Consensus 116 l~AQahLq~fYa~~GFv~~~e~yledGIpH 145 (155)
T COG2153 116 LGAQAHLQDFYASFGFVRVGEEYLEDGIPH 145 (155)
T ss_pred EehHHHHHHHHHHhCcEEcCchhhcCCCCc
Confidence 347889999999999999999999999953
No 30
>KOG2304|consensus
Probab=26.63 E-value=67 Score=27.56 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=27.9
Q ss_pred cccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhh
Q psy15143 56 RRRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHV 99 (149)
Q Consensus 56 k~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~i 99 (149)
.=++..|.-=|.+||- .| .|+|.|.+|.++-|..-..
T Consensus 187 ~~gKttVackDtpGFI----VN---RlLiPyl~ea~r~yerGdA 223 (298)
T KOG2304|consen 187 AVGKTTVACKDTPGFI----VN---RLLIPYLMEAIRMYERGDA 223 (298)
T ss_pred HhCCCceeecCCCchh----hh---HHHHHHHHHHHHHHHhcCC
Confidence 3456777888999987 33 5799999999998875433
No 31
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=25.77 E-value=73 Score=19.32 Aligned_cols=32 Identities=9% Similarity=0.176 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHhhhhhhHhhhhhcCCcccccc
Q psy15143 87 ANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIE 118 (149)
Q Consensus 87 aNErLq~~f~~~if~~eqeeY~~EgI~w~~i~ 118 (149)
+.+.+.+|....-+....+.+..+|++...+.
T Consensus 3 ~~~~V~~wL~~~~~~~y~~~f~~~~i~g~~L~ 34 (63)
T cd00166 3 SPEDVAEWLESLGLGQYADNFRENGIDGDLLL 34 (63)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCCCHHHHh
Confidence 34555566655555555566666676554443
No 32
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=25.32 E-value=1.4e+02 Score=23.30 Aligned_cols=13 Identities=15% Similarity=-0.125 Sum_probs=11.3
Q ss_pred ccCcceeeccccc
Q psy15143 57 RRKNYTKTNICHG 69 (149)
Q Consensus 57 ~~~~~I~ILDIfG 69 (149)
.....+-|||.-|
T Consensus 95 ~~~~r~~VldF~G 107 (155)
T PF08496_consen 95 EPKPRLFVLDFKG 107 (155)
T ss_pred CCCCeEEEEecCC
Confidence 4788899999988
No 33
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=24.03 E-value=70 Score=24.27 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=29.0
Q ss_pred HHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcC
Q psy15143 96 NQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 132 (149)
Q Consensus 96 ~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~k 132 (149)
....+..+...|.++||++..+.+.+...++++|...
T Consensus 5 ~p~~vA~~~G~f~~~gl~ve~~~~~~~~~~~~~l~~G 41 (216)
T PF09084_consen 5 APLYVAQEKGYFKEEGLDVEIVFFGGGGDVLEALASG 41 (216)
T ss_dssp HHHHHHHHTTHHHHTTEEEEEEEESSHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCccCeEEEEEEEecChhHHHHHHhcC
Confidence 3445677788889999999888887778888888763
No 34
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=22.88 E-value=19 Score=25.20 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=13.8
Q ss_pred hHHHHhhcCCCcccccchhhh
Q psy15143 124 LCLQLVEGKPNGLLCVLDDQA 144 (149)
Q Consensus 124 ~~ldLI~~kp~GLLsILDEEc 144 (149)
...+.|...|.-.+.++++..
T Consensus 46 ~L~~~l~~~P~~~l~~~~~a~ 66 (121)
T PF14551_consen 46 DLAEALIENPYRYLPLFEEAL 66 (121)
T ss_dssp HHHHHHHHCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555557777888877654
No 35
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=22.23 E-value=49 Score=22.84 Aligned_cols=19 Identities=5% Similarity=0.109 Sum_probs=16.3
Q ss_pred hcccccCcceeeccccccc
Q psy15143 53 SKRRRRKNYTKTNICHGEQ 71 (149)
Q Consensus 53 ~~kk~~~~~I~ILDIfGFE 71 (149)
+|.+...+++..+|++||.
T Consensus 1 ~~~~~~d~~~v~~dlpG~~ 19 (87)
T cd06481 1 EGKDGKEGFSLKLDVRGFS 19 (87)
T ss_pred CCCCccceEEEEEECCCCC
Confidence 3667788999999999997
No 36
>KOG4030|consensus
Probab=21.52 E-value=13 Score=29.85 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=24.6
Q ss_pred cccccCChhhHHHHhhc-----CCCcccccchhhhcc
Q psy15143 115 RHIEFSDNTLCLQLVEG-----KPNGLLCVLDDQAKA 146 (149)
Q Consensus 115 ~~i~~~dN~~~ldLI~~-----kp~GLLsILDEEc~f 146 (149)
.++-|.|++.+||++.. +|.|.=.||=|++.|
T Consensus 161 yPvvYVddsAILD~~f~nF~h~PPpGFe~IL~EQ~il 197 (197)
T KOG4030|consen 161 YPVVYVDDSAILDLKFKNFTHAPPPGFEEILVEQTIL 197 (197)
T ss_pred eeEEEeCCceEEEEEecccccCCCCChhheeeeeecC
Confidence 45667899999988754 788998888877654
No 37
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=21.50 E-value=36 Score=25.92 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=22.0
Q ss_pred hhcCCcccccccCChhhHHHHhhcCCCcccccc
Q psy15143 108 NKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 140 (149)
Q Consensus 108 ~~EgI~w~~i~~~dN~~~ldLI~~kp~GLLsIL 140 (149)
.+.+-.|..+-|....|..|+-. +|+|+|.
T Consensus 40 ~~~~~~W~~lGFQ~~dP~tDFR~---~G~LgL~ 69 (170)
T PF04727_consen 40 SRISEHWKELGFQGEDPATDFRG---MGLLGLD 69 (170)
T ss_pred CcCccHHHHhCCCCCCcHHHHhh---hhHHHHH
Confidence 34455899999987788888854 4887764
No 38
>KOG0388|consensus
Probab=20.23 E-value=1.6e+02 Score=29.47 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=37.7
Q ss_pred cccccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhH
Q psy15143 54 KRRRRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQ 104 (149)
Q Consensus 54 ~kk~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eq 104 (149)
.-....+.|+...+-|.+.++ ...++++-+-.|.+.+++.-+...|..+.
T Consensus 479 ~lp~~~ne~sa~e~n~~~d~e-ea~l~~~~lraAq~Av~a~~~t~afd~e~ 528 (1185)
T KOG0388|consen 479 ALPAERNEISAGEPNGMKDYE-EAMLQKLRLRAAQDAVSAKQITDAFDTEF 528 (1185)
T ss_pred cCCcccccccccCcccCCChH-HHHHHHHHHHHHHHHHhHHHhhhhhhhhh
Confidence 334456677888887777777 77788999999999998877777777653
Done!