Query psy15143
Match_columns 149
No_of_seqs 118 out of 996
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 21:44:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 5.6E-35 1.9E-39 270.7 6.6 91 57-148 443-533 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 6.2E-35 2.1E-39 267.6 6.7 90 58-148 378-467 (697)
3 4anj_A Unconventional myosin-V 100.0 2.3E-34 7.9E-39 273.0 6.6 91 57-148 447-537 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 3.7E-34 1.3E-38 265.5 6.9 89 58-148 429-517 (795)
5 4db1_A Myosin-7; S1DC, cardiac 100.0 3.6E-34 1.2E-38 265.3 6.4 90 57-148 452-542 (783)
6 1w9i_A Myosin II heavy chain; 100.0 5.8E-34 2E-38 263.5 6.8 89 59-148 447-537 (770)
7 1kk8_A Myosin heavy chain, str 100.0 7.9E-34 2.7E-38 264.5 6.1 90 57-148 451-541 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 1.6E-33 5.4E-38 267.8 6.3 89 58-148 429-517 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 3.7E-33 1.3E-37 263.5 6.8 90 58-148 425-517 (995)
10 1i84_S Smooth muscle myosin he 100.0 4.1E-33 1.4E-37 265.7 6.1 91 57-148 455-548 (1184)
11 1g8x_A Myosin II heavy chain f 100.0 6.2E-33 2.1E-37 262.4 7.0 90 58-148 446-537 (1010)
12 1y4m_A HERV-FRD_6P24.1 proviru 35.5 12 0.00041 23.6 0.9 28 120-147 24-51 (53)
13 3t5d_A Septin-7; GTP-binding p 32.3 36 0.0012 26.2 3.4 35 61-96 66-101 (274)
14 1mof_A Moloney murine leukemia 28.8 16 0.00055 23.1 0.6 28 120-147 26-53 (55)
15 2y1y_A Alpha-crystallin B chai 25.6 24 0.00083 23.2 1.1 19 54-72 1-19 (90)
16 4e2i_2 DNA polymerase alpha su 23.6 17 0.00059 24.5 0.0 23 65-87 12-35 (78)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=5.6e-35 Score=270.67 Aligned_cols=91 Identities=34% Similarity=0.594 Sum_probs=88.4
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCcc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 136 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GL 136 (149)
...++||||||||||+|+ .|||||||||||||+||++|++++|..||++|.+|||+|.+|+|.||++|||||+++|.||
T Consensus 443 ~~~~~IGvLDI~GFE~f~-~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GI 521 (784)
T 2v26_A 443 TSSYFIGVLDIAGFEYFE-HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGI 521 (784)
T ss_dssp CCSEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSH
T ss_pred cccceeeecccCCcccCC-cCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccH
Confidence 356899999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcccc
Q psy15143 137 LCVLDDQAKAVI 148 (149)
Q Consensus 137 LsILDEEc~fp~ 148 (149)
|+||||||++|.
T Consensus 522 lslLDEe~~~p~ 533 (784)
T 2v26_A 522 LDILDEENRLPQ 533 (784)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHhcCCC
Confidence 999999999985
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=6.2e-35 Score=267.62 Aligned_cols=90 Identities=37% Similarity=0.547 Sum_probs=87.9
Q ss_pred cCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCccc
Q psy15143 58 RKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GLL 137 (149)
...+||||||||||+|+ .|||||||||||||+||++|++++|..||+||.+|||+|.+|+|.||++|||||+++|.|||
T Consensus 378 ~~~~IGvLDI~GFE~f~-~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~Gil 456 (697)
T 1lkx_A 378 KGPVIGILDIYGFEVFQ-NNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 456 (697)
T ss_dssp CCCEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHH
T ss_pred CceeEEeeccccccccC-cCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChh
Confidence 47899999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcccc
Q psy15143 138 CVLDDQAKAVI 148 (149)
Q Consensus 138 sILDEEc~fp~ 148 (149)
+||||||++|.
T Consensus 457 slLDEec~~p~ 467 (697)
T 1lkx_A 457 SLLDEACLIAK 467 (697)
T ss_dssp HHHHHHHHSTT
T ss_pred hhhHHhhCCCC
Confidence 99999999984
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=2.3e-34 Score=272.99 Aligned_cols=91 Identities=34% Similarity=0.594 Sum_probs=88.5
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCcc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGL 136 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GL 136 (149)
...++||||||||||+|+ .|||||||||||||+||++|++++|..||++|.+|||+|++|+|.||++|||||+++|.||
T Consensus 447 ~~~~~IGILDI~GFE~f~-~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GI 525 (1052)
T 4anj_A 447 TSSYFIGVLDIAGFEYFE-HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGI 525 (1052)
T ss_dssp CCSEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSH
T ss_pred cccceEEEEecCCCcccc-cCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccH
Confidence 456899999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcccc
Q psy15143 137 LCVLDDQAKAVI 148 (149)
Q Consensus 137 LsILDEEc~fp~ 148 (149)
|+||||||++|.
T Consensus 526 l~lLDEe~~~p~ 537 (1052)
T 4anj_A 526 LDILDEENRLPQ 537 (1052)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHhcCCC
Confidence 999999999985
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=3.7e-34 Score=265.51 Aligned_cols=89 Identities=47% Similarity=0.723 Sum_probs=86.5
Q ss_pred cCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCccc
Q psy15143 58 RKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GLL 137 (149)
..++||||||||||+|+ .|||||||||||||+||++|++++|..||+||.+|||+|.+|+|.||++|||||+++ .|||
T Consensus 429 ~~~~IGvLDI~GFE~f~-~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIl 506 (795)
T 1w7j_A 429 QHSFIGVLDIYGFETFE-INSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVL 506 (795)
T ss_dssp CSEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHH
T ss_pred ccceEEeeccCcccccC-cCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHH
Confidence 57899999999999999 999999999999999999999999999999999999999999999999999999986 8999
Q ss_pred ccchhhhcccc
Q psy15143 138 CVLDDQAKAVI 148 (149)
Q Consensus 138 sILDEEc~fp~ 148 (149)
+||||||++|.
T Consensus 507 slLDEec~~p~ 517 (795)
T 1w7j_A 507 DLLDEECKMPK 517 (795)
T ss_dssp HHHHHHHTSTT
T ss_pred HhhhhhccCCC
Confidence 99999999985
No 5
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=3.6e-34 Score=265.31 Aligned_cols=90 Identities=41% Similarity=0.738 Sum_probs=85.3
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCccccccc-CChhhHHHHhhcCCCc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNG 135 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~-~dN~~~ldLI~~kp~G 135 (149)
...++||||||||||+|+ .|||||||||||||+||++|++++|..||++|.+|||+|..|+| .||++|||||+. |.|
T Consensus 452 ~~~~~IGvLDI~GFE~f~-~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~G 529 (783)
T 4db1_A 452 PRQYFIGVLDIAGFEIFD-FNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMG 529 (783)
T ss_dssp CCSEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTS
T ss_pred CCCceEEEeccccccccc-cCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCc
Confidence 456899999999999999 99999999999999999999999999999999999999999999 599999999995 899
Q ss_pred ccccchhhhcccc
Q psy15143 136 LLCVLDDQAKAVI 148 (149)
Q Consensus 136 LLsILDEEc~fp~ 148 (149)
||+||||||++|.
T Consensus 530 il~lLDEec~~p~ 542 (783)
T 4db1_A 530 IMSILEEECMFPK 542 (783)
T ss_dssp HHHHHCC-TTCTT
T ss_pred hHhhhhHHhcCCC
Confidence 9999999999984
No 6
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=5.8e-34 Score=263.54 Aligned_cols=89 Identities=43% Similarity=0.730 Sum_probs=86.3
Q ss_pred CcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCccccccc-CChhhHHHHhhcC-CCcc
Q psy15143 59 KNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGL 136 (149)
Q Consensus 59 ~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~-~dN~~~ldLI~~k-p~GL 136 (149)
.++||||||||||+|+ .|||||||||||||+||++|++++|..||++|.+|||+|..|+| .||++|||||+.+ |.||
T Consensus 447 ~~~IGvLDI~GFE~F~-~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~Gi 525 (770)
T 1w9i_A 447 AYFIGVLDIYGFEIFK-VNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525 (770)
T ss_dssp SEEEEEEECCCCCCCS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCH
T ss_pred CCeeeeccCccccccc-cCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCch
Confidence 7899999999999999 99999999999999999999999999999999999999999999 5999999999984 9999
Q ss_pred cccchhhhcccc
Q psy15143 137 LCVLDDQAKAVI 148 (149)
Q Consensus 137 LsILDEEc~fp~ 148 (149)
|+||||||++|.
T Consensus 526 lslLDEec~~p~ 537 (770)
T 1w9i_A 526 LALLDEQSVFPN 537 (770)
T ss_dssp HHHHHHHHSSSS
T ss_pred hhhhhhhhCCCC
Confidence 999999999985
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.98 E-value=7.9e-34 Score=264.48 Aligned_cols=90 Identities=44% Similarity=0.785 Sum_probs=86.6
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCccccccc-CChhhHHHHhhcCCCc
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNG 135 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~-~dN~~~ldLI~~kp~G 135 (149)
...++||||||||||+|+ .|||||||||||||+||++|++++|..||+||.+|||+|.+|+| .||++|||||+. |.|
T Consensus 451 ~~~~~IGvLDI~GFE~f~-~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~G 528 (837)
T 1kk8_A 451 KRNYYIGVLDIAGFEIFD-FNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMG 528 (837)
T ss_dssp CCCEEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTS
T ss_pred CCcceEEEEecCCccccc-cccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCc
Confidence 457899999999999999 99999999999999999999999999999999999999999999 599999999996 899
Q ss_pred ccccchhhhcccc
Q psy15143 136 LLCVLDDQAKAVI 148 (149)
Q Consensus 136 LLsILDEEc~fp~ 148 (149)
||+||||||++|.
T Consensus 529 IlslLDEec~~p~ 541 (837)
T 1kk8_A 529 ILSILEEECMFPK 541 (837)
T ss_dssp HHHHHHHHTTCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999984
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.98 E-value=1.6e-33 Score=267.78 Aligned_cols=89 Identities=47% Similarity=0.723 Sum_probs=86.5
Q ss_pred cCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCcccccccCChhhHHHHhhcCCCccc
Q psy15143 58 RKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~~dN~~~ldLI~~kp~GLL 137 (149)
..++||||||||||+|+ .|||||||||||||+||++|++++|..||++|..|||+|.+|+|.||++|||||+++ .|||
T Consensus 429 ~~~~IgvLDI~GFE~f~-~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil 506 (1080)
T 2dfs_A 429 QHSFIGVLDIYGFETFE-INSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVL 506 (1080)
T ss_dssp CCEEEEEEEECCCCCCS-SBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHH
T ss_pred cCceEEeeccCCccccC-cCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-Ccee
Confidence 57899999999999999 999999999999999999999999999999999999999999999999999999976 8999
Q ss_pred ccchhhhcccc
Q psy15143 138 CVLDDQAKAVI 148 (149)
Q Consensus 138 sILDEEc~fp~ 148 (149)
+||||||++|.
T Consensus 507 ~lLdee~~~p~ 517 (1080)
T 2dfs_A 507 DLLDEECKMPK 517 (1080)
T ss_dssp HHHHHHTTSTT
T ss_pred eeccccccCCC
Confidence 99999999985
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.97 E-value=3.7e-33 Score=263.50 Aligned_cols=90 Identities=41% Similarity=0.692 Sum_probs=86.8
Q ss_pred cCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCccccccc-CChhhHHHHhhc--CCC
Q psy15143 58 RKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPN 134 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~-~dN~~~ldLI~~--kp~ 134 (149)
..++||||||||||+|+ .|||||||||||||+||++|++++|..||++|..|||+|.+|+| .||++|||||+. +|.
T Consensus 425 ~~~~IgvLDI~GFE~f~-~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~ 503 (995)
T 2ycu_A 425 GASFLGILDIAGFEIFQ-LNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPP 503 (995)
T ss_dssp CSEEEEEEECCCBCCCS-SBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSC
T ss_pred ccceEEEeccccccccc-cchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCC
Confidence 57899999999999999 99999999999999999999999999999999999999999999 699999999997 389
Q ss_pred cccccchhhhcccc
Q psy15143 135 GLLCVLDDQAKAVI 148 (149)
Q Consensus 135 GLLsILDEEc~fp~ 148 (149)
|||+||||||++|.
T Consensus 504 Gil~lLdee~~~p~ 517 (995)
T 2ycu_A 504 GLLALLDEECWFPK 517 (995)
T ss_dssp CHHHHHHHSSSSTT
T ss_pred chhhhhHHHhcCCC
Confidence 99999999999984
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.97 E-value=4.1e-33 Score=265.72 Aligned_cols=91 Identities=41% Similarity=0.686 Sum_probs=85.0
Q ss_pred ccCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCccccccc-CChhhHHHHhhcC--C
Q psy15143 57 RRKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--P 133 (149)
Q Consensus 57 ~~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~-~dN~~~ldLI~~k--p 133 (149)
...++||||||||||+|+ .|||||||||||||+||++|++++|..+|++|..|||+|.+|+| .||++|||||+.+ |
T Consensus 455 ~~~~~IgvLDi~GFE~f~-~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~ 533 (1184)
T 1i84_S 455 QGASFLGILDIAGFEIFE-INSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNP 533 (1184)
T ss_dssp --CEEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSS
T ss_pred CCcceEEEeecCCcCCCC-cchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCC
Confidence 357899999999999999 99999999999999999999999999999999999999999999 5999999999963 3
Q ss_pred Ccccccchhhhcccc
Q psy15143 134 NGLLCVLDDQAKAVI 148 (149)
Q Consensus 134 ~GLLsILDEEc~fp~ 148 (149)
+|||+||||||+||.
T Consensus 534 ~Gil~lLdee~~~p~ 548 (1184)
T 1i84_S 534 PGVLALLDEECWFPK 548 (1184)
T ss_dssp CCHHHHHHHTTSCTT
T ss_pred CCchhhhhhhhCCCC
Confidence 499999999999985
No 11
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.97 E-value=6.2e-33 Score=262.40 Aligned_cols=90 Identities=42% Similarity=0.735 Sum_probs=86.9
Q ss_pred cCcceeecccccccccccchhhhhHhhhhhhhHHHHHHHHhhhhhhHhhhhhcCCccccccc-CChhhHHHHhhcC-CCc
Q psy15143 58 RKNYTKTNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNG 135 (149)
Q Consensus 58 ~~~~I~ILDIfGFE~f~~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EgI~w~~i~~-~dN~~~ldLI~~k-p~G 135 (149)
..++||||||||||+|+ .|||||||||||||+||++|++++|..||++|..|||+|.+|+| .||++|||||+.+ |.|
T Consensus 446 ~~~~IgvLDI~GFE~f~-~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~G 524 (1010)
T 1g8x_A 446 KAYFIGVLDISGFEIFK-VNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524 (1010)
T ss_dssp CSEEEEEEECCCCCCCS-SBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTC
T ss_pred cCceeeeccCcccccCC-cCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCe
Confidence 57899999999999999 99999999999999999999999999999999999999999999 5999999999984 999
Q ss_pred ccccchhhhcccc
Q psy15143 136 LLCVLDDQAKAVI 148 (149)
Q Consensus 136 LLsILDEEc~fp~ 148 (149)
||+||||||++|.
T Consensus 525 il~lLdee~~~p~ 537 (1010)
T 1g8x_A 525 ILALLDEQSVFPN 537 (1010)
T ss_dssp HHHHHHHHTTSSS
T ss_pred eehhhhHHhCCCC
Confidence 9999999999985
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=35.45 E-value=12 Score=23.57 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=23.9
Q ss_pred CChhhHHHHhhcCCCcccccchhhhccc
Q psy15143 120 SDNTLCLQLVEGKPNGLLCVLDDQAKAV 147 (149)
Q Consensus 120 ~dN~~~ldLI~~kp~GLLsILDEEc~fp 147 (149)
..|...+|++.....|+=..|.|+|.|-
T Consensus 24 lQNRraLDlL~a~~GG~C~~l~e~CC~y 51 (53)
T 1y4m_A 24 LQNRRGLDMLTAAQGGICLALDEKCCFW 51 (53)
T ss_dssp HHHHHHHHHHTGGGTSHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHhCCccHHhcCchhcc
Confidence 3578899999888899999999999863
No 13
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=32.30 E-value=36 Score=26.19 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=21.3
Q ss_pred ceeeccccccccccc-chhhhhHhhhhhhhHHHHHHH
Q psy15143 61 YTKTNICHGEQTLLT-SVSFEQLCINYANEHLQYYFN 96 (149)
Q Consensus 61 ~I~ILDIfGFE~f~~-~NsfEQLcINyaNErLq~~f~ 96 (149)
.+.|+|++||..+.. ...+.. .++|..++...|+.
T Consensus 66 ~l~liDTpG~~d~~~~~~~~~~-i~~~i~~~~~~~l~ 101 (274)
T 3t5d_A 66 LLTIVDTPGFGDAVDNSNCWQP-VIDYIDSKFEDYLN 101 (274)
T ss_dssp EEEEEECCCCSCCSCCTTTTHH-HHHHHHHHHHHHHH
T ss_pred EEEEEECCCccccccchhhHHH-HHHHHHHHHHHHHH
Confidence 688999999976641 223433 34555555555554
No 14
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=28.76 E-value=16 Score=23.13 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=23.8
Q ss_pred CChhhHHHHhhcCCCcccccchhhhccc
Q psy15143 120 SDNTLCLQLVEGKPNGLLCVLDDQAKAV 147 (149)
Q Consensus 120 ~dN~~~ldLI~~kp~GLLsILDEEc~fp 147 (149)
..|...+|++.....|+=..|.|+|.|-
T Consensus 26 lQNRraLD~L~a~~GG~C~~l~e~CCfy 53 (55)
T 1mof_A 26 LQNRRGLDLLFLKEGGLCAALKEECAFY 53 (55)
T ss_dssp HHHHHHHHHHTGGGTCHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHHhCCccHHHcCchhcc
Confidence 3578889999888889999999999873
No 15
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=25.65 E-value=24 Score=23.17 Aligned_cols=19 Identities=0% Similarity=-0.090 Sum_probs=12.4
Q ss_pred cccccCcceeecccccccc
Q psy15143 54 KRRRRKNYTKTNICHGEQT 72 (149)
Q Consensus 54 ~kk~~~~~I~ILDIfGFE~ 72 (149)
|++...+++..+|++||.-
T Consensus 1 ~k~~~~~~~v~~dlPG~~~ 19 (90)
T 2y1y_A 1 GAMEKDRFSVNLDVKHFSP 19 (90)
T ss_dssp -----CCEEEEEECTTSCG
T ss_pred CCcCCCEEEEEEECCCCcH
Confidence 4567788999999999963
No 16
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=23.63 E-value=17 Score=24.51 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=15.7
Q ss_pred ccccccccccc-chhhhhHhhhhh
Q psy15143 65 NICHGEQTLLT-SVSFEQLCINYA 87 (149)
Q Consensus 65 LDIfGFE~f~~-~NsfEQLcINya 87 (149)
||+||.+.-+. ..-+..||+.|-
T Consensus 12 l~~Fgi~c~d~v~eKl~ElC~~y~ 35 (78)
T 4e2i_2 12 LQIFGLDCEEALIEKLVELCVQYG 35 (78)
T ss_dssp HHHTTCCCCHHHHHHHHTHHHHSC
T ss_pred HHHcCCCCcHHHHHHHHHHHHHcC
Confidence 78888887653 334667787773
Done!