RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15143
(149 letters)
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 117 bits (294), Expect = 3e-31
Identities = 44/67 (65%), Positives = 54/67 (80%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQLCINYANE LQYYFNQH+F+ EQEEY EGI W +IE++DN C+QL KP GLL
Sbjct: 394 SFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLL 453
Query: 138 CVLDDQA 144
+LD+++
Sbjct: 454 YLLDEES 460
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 116 bits (294), Expect = 3e-31
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F DN C+ L+E KP G+L
Sbjct: 386 SFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGIL 445
Query: 138 CVLDDQAK 145
+LD++ +
Sbjct: 446 SLLDEECR 453
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 109 bits (275), Expect = 1e-28
Identities = 42/69 (60%), Positives = 52/69 (75%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F+DN + L+E KP GLL
Sbjct: 379 SFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLL 438
Query: 138 CVLDDQAKA 146
+LD++
Sbjct: 439 SLLDEECLF 447
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 104 bits (262), Expect = 5e-27
Identities = 39/65 (60%), Positives = 47/65 (72%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQ CIN NE LQ +FNQHVF+ EQEEY KE I W +IEF DN L L+E KP G++
Sbjct: 384 SFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGII 443
Query: 138 CVLDD 142
+LD+
Sbjct: 444 ALLDE 448
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 103 bits (260), Expect = 1e-26
Identities = 39/69 (56%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 136
SFEQLCINYANE LQ +FN H+F+ EQEEY +EGI W I++ DN C+ L+E KP G+
Sbjct: 380 SFEQLCINYANEKLQQFFNHHMFKLEQEEYVREGIAWTFIDYGLDNQACIDLIEKKPPGI 439
Query: 137 LCVLDDQAK 145
L +LD++ +
Sbjct: 440 LSLLDEECR 448
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 103 bits (259), Expect = 2e-26
Identities = 38/68 (55%), Positives = 52/68 (76%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQLCIN+ANE+LQ +F QH+F+ EQEEYN E I W+HIEF DN L L+ KP ++
Sbjct: 379 SFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIM 438
Query: 138 CVLDDQAK 145
++D+++K
Sbjct: 439 SLIDEESK 446
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 101 bits (254), Expect = 7e-26
Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQ CINYANE LQ FNQHVF+ EQEEY KEGI W I+F DN C+ L+E K G+L
Sbjct: 385 SFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESKL-GIL 443
Query: 138 CVLDDQAK 145
+LD++ +
Sbjct: 444 SLLDEECR 451
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 101 bits (252), Expect = 1e-25
Identities = 41/70 (58%), Positives = 51/70 (72%)
Query: 74 LTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 133
L+ SFEQLCINYANE+LQY FN+ VFQ EQEEY +E + W I F+DN + L+ KP
Sbjct: 374 LSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKP 433
Query: 134 NGLLCVLDDQ 143
G+L +LDDQ
Sbjct: 434 YGILRILDDQ 443
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 95.3 bits (237), Expect = 1e-23
Identities = 40/67 (59%), Positives = 51/67 (76%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQ CINYANE LQ +FN+H+F+ EQEEY ++GI W +EF DN CL L E KP GLL
Sbjct: 382 SFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLL 441
Query: 138 CVLDDQA 144
+LD+++
Sbjct: 442 SLLDEES 448
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 89.5 bits (222), Expect = 1e-21
Identities = 37/68 (54%), Positives = 50/68 (73%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQLCIN ANE +QYYFNQH+F +EQ+EY EG+ R +E+ DN L + KP GLL
Sbjct: 390 SFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLL 449
Query: 138 CVLDDQAK 145
+LD++++
Sbjct: 450 ALLDEESR 457
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 85.7 bits (213), Expect = 3e-20
Identities = 36/67 (53%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 136
SFEQLCINY NE LQ +FN H+F EQEEY +EGI W I+F D + L+E P G+
Sbjct: 391 SFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGI 450
Query: 137 LCVLDDQ 143
L +LD++
Sbjct: 451 LSLLDEE 457
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 85.3 bits (212), Expect = 4e-20
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGL 136
SFEQ CINY NE LQ F + + EQEEY +EGI+W IE+ +N + L+EGK P G+
Sbjct: 383 SFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGI 442
Query: 137 LCVLDD 142
+LDD
Sbjct: 443 FSILDD 448
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 84.0 bits (208), Expect = 1e-19
Identities = 40/68 (58%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGL 136
SFEQLCINY NE LQ +FNQH+F+ EQEEY KEGI W I++ DN C+ L+E K P G+
Sbjct: 445 SFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGI 504
Query: 137 LCVLDDQA 144
L +LD++
Sbjct: 505 LSLLDEEC 512
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 80.6 bits (199), Expect = 1e-18
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQ CINY NE LQ +FN+ + + EQE Y +EG+ + + DN C+ L+E K NG+L
Sbjct: 414 SFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGIL 473
Query: 138 CVLDDQAK 145
+LD++ +
Sbjct: 474 DILDEENR 481
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 54.2 bits (131), Expect = 2e-09
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
K +KK K KK K+ +KK+K +++K K KK+ K+ +RRK +
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEK---EKEKPKVKKRHRDTKNIGKRRKPSGTSE 433
Score = 54.2 bits (131), Expect = 2e-09
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+K EKK K KK K+ +KK+K+K ++ K KK+ + TK KRR+
Sbjct: 380 TKAPSEKKTGKPSKKVLAKRAEKKEKEK----EKPKVKKRHRDTKNIGKRRKPSG 430
Score = 51.9 bits (125), Expect = 1e-08
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
I E + K K +KK K KK K + +KK+K+K+K K K + R KN K
Sbjct: 373 IDELRPKTKAPSEKKTGKPSKKVLAK---RAEKKEKEKEKPKVKKRHRDTKNIGK 424
Score = 50.7 bits (122), Expect = 4e-08
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
K + KK K+ +KK+K+K+K K K ++ K K++K S
Sbjct: 386 KKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTS 432
Score = 49.9 bits (120), Expect = 6e-08
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK 45
SK + K+ +KK+K+K+K K KK+ + KN+ K +K
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 41.5 bits (98), Expect = 6e-05
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKN 35
L+K ++K+K+K+K K KK+ + K K+
Sbjct: 395 VLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRR 426
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 54.3 bits (131), Expect = 2e-09
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
S EQL IN NE LQ F VF+ E + Y EGI +E++ N + L+ GK +L
Sbjct: 479 SLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVL 538
Query: 138 CVLDDQ 143
+L+DQ
Sbjct: 539 SILEDQ 544
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 46.9 bits (112), Expect = 8e-07
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 5/53 (9%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
EL+K I+E K+K K KKK+++KK +K+KK KKK+KKK K +KK R+
Sbjct: 367 ELNKRIEEIKEKYPKPPKKKREEKKPQKRKK-----KKKRKKKGKKRKKKGRK 414
Score = 42.3 bits (100), Expect = 3e-05
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 9/57 (15%)
Query: 7 KLIKEKKKK----KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+L +E K+ K+K K KKK+++KK +K +KKKKK+KK KK K++ RK
Sbjct: 363 ELKEELNKRIEEIKEKYPKPPKKKREEKKPQK-----RKKKKKRKKKGKKRKKKGRK 414
Score = 30.7 bits (70), Expect = 0.21
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
I ++ K++ K+ ++ K+K K KK K+++KK +K KKK KR+++ K
Sbjct: 360 IGDELKEELNKRIEEIKEKYPKPPKK-----KREEKKPQKRKKKKKRKKKGKKRK 409
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 45.6 bits (109), Expect = 2e-06
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E +L+ EK +K + K KK +K K++ ++K K
Sbjct: 809 EALELLAEKPEKLRYLADAPAKDPAGKKAAVK--FSRKTKQQYVASEKDGK 857
Score = 40.5 bits (96), Expect = 1e-04
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
E + ++ K KK K +K K + +K K T
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQ--QYVASEKDGKAT 859
Score = 32.5 bits (75), Expect = 0.065
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 29 KKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
K +K + L K KK K R+ ++ Y +
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVAS 852
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 44.5 bits (106), Expect = 5e-06
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
E+ L KK KK KK +K +KK++++KK K+ KKK++ +++ K
Sbjct: 398 EIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKE 449
Score = 43.4 bits (103), Expect = 1e-05
Identities = 19/55 (34%), Positives = 38/55 (69%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
F SK +K KK +K +KK++++KK+KKKK +KK+++++++ +KK + +
Sbjct: 401 FLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 41.8 bits (99), Expect = 4e-05
Identities = 21/67 (31%), Positives = 41/67 (61%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
K I EK +KK++++KK+KKKK KKK +E++K+KK+++ +++ + + +
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Query: 67 CHGEQTL 73
+ TL
Sbjct: 473 KKKQATL 479
Score = 41.4 bits (98), Expect = 6e-05
Identities = 17/54 (31%), Positives = 36/54 (66%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+K IK+ +K +KK++++KK+KKKK +E+++++K+KK ++K +
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Score = 40.7 bits (96), Expect = 1e-04
Identities = 18/66 (27%), Positives = 38/66 (57%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICH 68
+K +KK++++KK+KKKK KK +E+++K+KK++ K++ + + +
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Query: 69 GEQTLL 74
+Q L
Sbjct: 474 KKQATL 479
Score = 38.0 bits (89), Expect = 8e-04
Identities = 14/50 (28%), Positives = 36/50 (72%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
E + K+ KKK+++++++K+KK+++K+ +E +++K++++ KKK
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 37.6 bits (88), Expect = 0.001
Identities = 15/56 (26%), Positives = 40/56 (71%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
E ++ +E++KK+KKKK KKK+++++++ KE++K++++++ +++ + K
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 30.7 bits (70), Expect = 0.23
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 22 KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
KK KK KK EKK++++KK+ KKK+ ++K +
Sbjct: 404 GSKKATKKIKKIV-EKAEKKREEEKKEKKKKAFAGKKKEEEE 444
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 43.7 bits (103), Expect = 1e-05
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 75 TSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 134
+ +FE+LC NY E LQ F+ F E Y +EG+ +EF L E P
Sbjct: 393 RAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVE---VEFD-------LAEPSPG 442
Query: 135 GLLCVLD 141
+ ++D
Sbjct: 443 TTVALVD 449
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 40.7 bits (95), Expect = 1e-04
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK-----KKKTKKKSKRR-----RRKN 60
E+KKKK++K K+K+ KK K +K+ K + ++ KK++KKS++R ++
Sbjct: 19 ERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDENPED 78
Query: 61 YTKTNICHGEQTLLTSVSFEQ 81
+ + G++ L+S +Q
Sbjct: 79 FIDPDTPFGQKKRLSSQMAKQ 99
Score = 27.6 bits (61), Expect = 2.9
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
E + +KK +++ ++KKKK++K + KK K +K+ K K + ++ + T
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNV 58
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 39.7 bits (93), Expect = 2e-04
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
+ E +EKK+KKKKK+ KK+KK+KK KK+K + + KKKKKKK KK
Sbjct: 143 VEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 38.9 bits (91), Expect = 3e-04
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+E+KK+KKKKK+ KK+KK+KK KK+ +++ K KKKKKK KKK
Sbjct: 151 EEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 37.0 bits (86), Expect = 0.001
Identities = 26/43 (60%), Positives = 34/43 (79%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+E++KK+KKKKK+ KK+KK+KK KK + E K KKKKK KKK
Sbjct: 150 EEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 36.2 bits (84), Expect = 0.002
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
KE K +K+ + ++++KK+KKKKK + KEKK+KK KK+ + K ++K K
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKK 190
Score = 33.9 bits (78), Expect = 0.013
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
+ + ++++KK+KKKKK+ KK+KK+K KEK + K K KKK K+++
Sbjct: 141 AKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 26.2 bits (58), Expect = 6.9
Identities = 13/56 (23%), Positives = 32/56 (57%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+ + + +K+ K +K+ + ++++ K+KKK+ KK+K +KK K+ + +
Sbjct: 128 LGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 26.2 bits (58), Expect = 6.9
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
S+L E + +K+ K +K+ + ++++K KEKKKKK+ KK KK+ K ++ K
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEK---KEKKKKKEVKKEKKEKKDKKEKM 177
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 39.7 bits (93), Expect = 2e-04
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
FE + +KK K K KK +K KK K I K K+ K K
Sbjct: 763 FEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 37.8 bits (88), Expect = 0.001
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKK--KKKKKKTKKKSK 54
+ +KK K K KK +K KK K +K K K+ KK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKV 811
Score = 35.5 bits (82), Expect = 0.006
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ +KK K K KK +K KK K K K+ KKK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 35.5 bits (82), Expect = 0.007
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 10 KEKKKKKKKKKKKKKKKKKK----------KKKKKNLIKEKKKKKKKKKTKKKSKR 55
K KK KK K+++ KK +KK KK +K KK K+++
Sbjct: 741 KAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQK 796
Score = 35.1 bits (81), Expect = 0.010
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ +KK K K KK +K K K +K K+KR +K
Sbjct: 770 RGEKKAKPKAAKKDARKAKKP----SAKTQKIAAATKAKRAAKKK 810
Score = 33.9 bits (78), Expect = 0.020
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKK---------KKKNLIKEKKKKKKKKKTKKKSKRRR 57
K +EK KK KK K+++ KK + + K K KK +K KK S + +
Sbjct: 736 KTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQ 795
Query: 58 R 58
+
Sbjct: 796 K 796
Score = 33.6 bits (77), Expect = 0.030
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNL-----IKEKKKKKKKKKTKKKSKRRRRKNYTK 63
++K KK KK K+++ KK N + +KK K K K K ++ T+
Sbjct: 738 AREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQ 795
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 39.9 bits (94), Expect = 2e-04
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
E KL KK++K +KK +K++ +K KKK KK K +TKK
Sbjct: 410 ERKKL--RKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 35.3 bits (82), Expect = 0.008
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
++KK +KK++K +KK +K++ KKK + K K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPD 450
Score = 34.5 bits (80), Expect = 0.014
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
++KK +KK++K +KK + EK KKK + K +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKG 448
Score = 33.8 bits (78), Expect = 0.026
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
++KK +KK++K +KK + +K KKK K + TK
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKK 455
Score = 33.4 bits (77), Expect = 0.032
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
++KK +KK++K +KK +K +E +K KKK + +K+ + +
Sbjct: 408 PAERKKLRKKQRKAEKKAEK---EEAEKAAAKKKAEAAAKKAKGPD 450
Score = 31.4 bits (72), Expect = 0.13
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 19 KKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
++KK +KK++K +K KE+ +K KK + + ++ + +T
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454
Score = 26.8 bits (60), Expect = 5.2
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
L+ E ++++ + ++KK +KK+ ++K +K++ +K K K K
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAK 447
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 38.5 bits (90), Expect = 3e-04
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNIC 67
E+K+K K KKKK KKKK K K KK+ K+ K +KK +K + K+Y++T
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLST 135
Score = 30.8 bits (70), Expect = 0.17
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E K KE ++ +K KK+ ++K+K K KKK K+K K K KK KK K
Sbjct: 59 EAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDK 109
Score = 27.3 bits (61), Expect = 2.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYT 62
+ K K+K K K KK KK K +KK +K+ K + K +T + + Y
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRKYA 145
>gnl|CDD|222911 PHA02616, PHA02616, VP2/VP3; Provisional.
Length = 259
Score = 38.9 bits (90), Expect = 4e-04
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ + L +L K+ K + K+K+ + K KK K K+ + SK+RR ++
Sbjct: 188 ILYVLEELNKDIYKIPTQAVKRKQDELHPVSPTKKAALSKKSKWTGTKSSQSSKKRRGRS 247
Query: 61 YTKT 64
++
Sbjct: 248 TGRS 251
Score = 30.8 bits (69), Expect = 0.20
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYT 62
EL+K I + + K+K+ + KK K K K ++ KK + R T
Sbjct: 194 ELNKDIYKIPTQAVKRKQDELHPVSPTKKAALSKKSKWTGTKSSQSSKKRRGRSTGRST 252
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 38.5 bits (90), Expect = 6e-04
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
L + ++++ +K K+K K K K ++ KK ++KKK+KK K + + +
Sbjct: 341 SLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 37.4 bits (87), Expect = 0.001
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
EL K I++ K+K K K K ++ KK++ + ++KKK+ K KS+RR +N
Sbjct: 345 ELEKRIEKLKEKPPKPPTKAKPERDKKERPG------RYRRKKKEKKAKSERRGLQN 395
Score = 32.8 bits (75), Expect = 0.048
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+++ +K+ +K K+K K K ++KK++ + + KKK K+ + +
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSE 389
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 38.2 bits (89), Expect = 7e-04
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK------KTKKKSKRRR 57
LS +E+ K KK KK+ K + KK K+KKKKK+KK +TK K +
Sbjct: 38 ILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPK 97
Query: 58 RKNYTKTNI 66
+ TK
Sbjct: 98 KSKKTKKKP 106
Score = 37.0 bits (86), Expect = 0.002
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ + K+K +KKKKKKK+KK+ K + + K KK KK KKK K N
Sbjct: 61 DKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDN 117
Score = 35.1 bits (81), Expect = 0.009
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
K KE K + KKK +KKKKKKK+KK+ E K K K KK+K++ K ++
Sbjct: 56 KDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDV 115
Query: 67 CH 68
+
Sbjct: 116 DN 117
Score = 33.5 bits (77), Expect = 0.028
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
K+ +KKKKKKK+KK+ K + + K +K KK KKK K K + K
Sbjct: 68 KKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIA 123
Score = 33.2 bits (76), Expect = 0.040
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
KE +++ K KK KK++ E KKK +KKK KKK K+ +
Sbjct: 36 KEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLG 92
Score = 26.6 bits (59), Expect = 5.1
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
K K++ K + + K K KK KK KK K K + K ++ + N
Sbjct: 77 KKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSN 130
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 37.4 bits (87), Expect = 7e-04
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+++ + K + K+KKK++ K K K K + KK K +K K
Sbjct: 109 TEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 37.0 bits (86), Expect = 0.001
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
++ +++ + K + K+KKK++ EK+K K + K K SK
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150
Score = 34.0 bits (78), Expect = 0.014
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
E+ + +++ + K + K+KKK + + K +K+K KT+ K +
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 33.2 bits (76), Expect = 0.026
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+E + +++ + K + K+KKK+ + K K +K+K K KK K
Sbjct: 102 EEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 29.7 bits (67), Expect = 0.41
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+F ELS E+++ +++ + +++ + K ++ KEKKK++ K +K K +
Sbjct: 87 IFRELSSSDDEEEETEEESTDETEQEDPPETKTES--KEKKKREVPKPKTEKEKPKTEPK 144
Query: 61 YTKT 64
K
Sbjct: 145 KPKP 148
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 37.8 bits (88), Expect = 9e-04
Identities = 20/45 (44%), Positives = 24/45 (53%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
KEK K +KK KK K K K K K K + + K KK KT K+
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 35.1 bits (81), Expect = 0.007
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+ K+K K +KK KK K K K K K K K + K KK K
Sbjct: 79 PTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKT 124
Score = 34.8 bits (80), Expect = 0.008
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
K K+K K +KK KK K K K K K + + K KK +K +K
Sbjct: 83 KPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKA 128
Score = 34.8 bits (80), Expect = 0.009
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
K K +KK KK K K K K K K K + KK K K +
Sbjct: 87 KPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPA 130
Score = 34.4 bits (79), Expect = 0.012
Identities = 16/49 (32%), Positives = 19/49 (38%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
K K+ KK K K K K K K K K + K K K + R
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPAR 137
Score = 34.0 bits (78), Expect = 0.017
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ K K+K K +KK KK K K K K K K K + K K
Sbjct: 76 PPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPK 118
Score = 33.2 bits (76), Expect = 0.029
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K K+K K +KK KK K K K K + K + K KK K+
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTA 125
Score = 32.5 bits (74), Expect = 0.059
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 4 ELSKLIKEKKKKKKKKKKKKK-----KKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
E ++ K + + + K+K K +KK K K K K K K K K + + +
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPK 118
Query: 59 KNYTKTNI 66
K +KT
Sbjct: 119 KPPSKTAA 126
Score = 26.7 bits (59), Expect = 5.1
Identities = 12/54 (22%), Positives = 16/54 (29%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
K K K K K K K + K KK K + + S +
Sbjct: 100 KPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSA 153
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to
196 amino acids in length.
Length = 149
Score = 36.9 bits (86), Expect = 0.001
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
+K+ + K+ +KK K L K K K K+ K KSKR
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 36.5 bits (85), Expect = 0.002
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
+K+ + K+ +KK K K K K+KK K K
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 34.2 bits (79), Expect = 0.008
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+K+ + K+ +KK K +K + + K K+KK K+K+ +
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 29.6 bits (67), Expect = 0.35
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+K+ + K+ +KK + +K K K K+K + +R
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRA 43
Score = 29.2 bits (66), Expect = 0.46
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
+K+ + K+ +KK K +K + K+KK K K
Sbjct: 3 SSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASE 46
Score = 28.4 bits (64), Expect = 1.1
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K+ +KK K +K K K+K+KK K K+ +S
Sbjct: 12 PKRSRKKGVKALRKAAVAKS----KDKQKKPKSKRAASESG 48
Score = 28.1 bits (63), Expect = 1.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKN 35
FE + K+ K +K K K K+KK K K
Sbjct: 10 FEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKR 42
Score = 28.1 bits (63), Expect = 1.4
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
+++ + K+ +KK K +K K K K+KK K + S
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVA---KSKDKQKKPKSKRAAS 45
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 37.7 bits (88), Expect = 0.001
Identities = 16/45 (35%), Positives = 17/45 (37%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
KKK K K K KKK K L KK +KK K
Sbjct: 74 IPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDL 118
Score = 36.5 bits (85), Expect = 0.003
Identities = 15/45 (33%), Positives = 16/45 (35%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E KKK K K K KK L E KK +K K
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDK 114
Score = 36.5 bits (85), Expect = 0.003
Identities = 14/49 (28%), Positives = 17/49 (34%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ KKK K K K KKK + KK +KK K
Sbjct: 68 DATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDD 116
Score = 36.1 bits (84), Expect = 0.004
Identities = 17/56 (30%), Positives = 21/56 (37%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
KKK K K K KKK K+ + KK +KK K K+ N
Sbjct: 73 DIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLN 128
Score = 35.4 bits (82), Expect = 0.006
Identities = 13/52 (25%), Positives = 17/52 (32%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+ + KKK K K K KKK + KK +KK
Sbjct: 65 DTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDD 116
Score = 34.6 bits (80), Expect = 0.012
Identities = 14/54 (25%), Positives = 20/54 (37%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ KKK K K K K +K++ KK + K + NY K
Sbjct: 69 ATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122
Score = 34.2 bits (79), Expect = 0.018
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ K + + KKK K K K K K + KK +KK+
Sbjct: 60 SGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNA 111
Score = 33.8 bits (78), Expect = 0.024
Identities = 13/52 (25%), Positives = 17/52 (32%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E K+ K K K KKK K + + K +KK K
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYV 121
Score = 33.4 bits (77), Expect = 0.029
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K + +++ KKK KK K K K + KE+ K+ + K K +
Sbjct: 7 KAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQ 51
Score = 32.3 bits (74), Expect = 0.079
Identities = 12/47 (25%), Positives = 14/47 (29%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
K K K K KKK K + K K+ K K
Sbjct: 76 KKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVK 122
Score = 31.9 bits (73), Expect = 0.11
Identities = 11/49 (22%), Positives = 14/49 (28%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K K KKK K + KK +K +K K
Sbjct: 80 KTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLN 128
Score = 31.1 bits (71), Expect = 0.19
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K KKK K + KK +KKN + + K ++
Sbjct: 85 AAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQ 129
Score = 30.7 bits (70), Expect = 0.24
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
LS ++K+ + KKK K K +KK K + +KK K
Sbjct: 58 FLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEK 108
Score = 30.7 bits (70), Expect = 0.29
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
+++ KKK KK K K K K IKE + KKK +
Sbjct: 11 AAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQ 54
Score = 30.3 bits (69), Expect = 0.36
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
++L E++ KKK KK K K K K+ + + + KKK + +
Sbjct: 8 AELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVL 56
Score = 30.0 bits (68), Expect = 0.44
Identities = 10/49 (20%), Positives = 12/49 (24%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+ K + KKK K K K KK K
Sbjct: 53 DQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELD 101
Score = 29.6 bits (67), Expect = 0.56
Identities = 11/47 (23%), Positives = 13/47 (27%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
K + KKK K K KKK K + K
Sbjct: 61 GMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAE 107
Score = 29.2 bits (66), Expect = 0.85
Identities = 13/61 (21%), Positives = 20/61 (32%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+L KL + K K K++ K+ + KKK I + K
Sbjct: 19 KLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKK 78
Query: 64 T 64
T
Sbjct: 79 T 79
Score = 29.2 bits (66), Expect = 0.88
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K + +++ KKK KK K+ K K++ K+ + K
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKK 46
Score = 28.0 bits (63), Expect = 2.3
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
K + +++ KKK KK K K K K+ K++ ++K
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKT 48
Score = 27.7 bits (62), Expect = 2.4
Identities = 10/45 (22%), Positives = 13/45 (28%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K KKK K + KK +KK K +
Sbjct: 89 KAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDD 133
Score = 27.7 bits (62), Expect = 2.8
Identities = 10/54 (18%), Positives = 14/54 (25%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ + I + K + KK K K KKK K
Sbjct: 44 SKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLK 97
Score = 27.3 bits (61), Expect = 3.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
EL+ + KKK KK K K K K++ K ++ KKK ++
Sbjct: 9 ELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLI 57
Score = 27.3 bits (61), Expect = 3.7
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
K + +++ KKK K L + K K K + K +K +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPE 50
Score = 27.3 bits (61), Expect = 3.7
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
K +KK K + KK +KK K +L K +
Sbjct: 89 KAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDD 134
Score = 27.3 bits (61), Expect = 4.2
Identities = 9/66 (13%), Positives = 24/66 (36%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICHGEQT 72
K + +++ KKK KK + K K++ K+ + +++ +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSG 61
Query: 73 LLTSVS 78
++
Sbjct: 62 MVKDTD 67
Score = 26.9 bits (60), Expect = 5.2
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K KKK K + KK +KK + K ++
Sbjct: 87 AAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQAD 131
Score = 26.5 bits (59), Expect = 5.7
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 14/73 (19%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKK--------------KKKKKNLIKEKKKKKKKKKTKK 51
+ KE+ K+ + KKK ++ + + K+ K K K
Sbjct: 31 GFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKA 90
Query: 52 KSKRRRRKNYTKT 64
+K++ + +
Sbjct: 91 PAKKKLKDELDSS 103
Score = 26.1 bits (58), Expect = 9.7
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
++ +KK KK K K K K++ K+ L +KK ++ +
Sbjct: 12 AEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLS 60
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 37.2 bits (87), Expect = 0.001
Identities = 14/55 (25%), Positives = 40/55 (72%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
++ K +E+++++ ++KK++KKK++++ K L E+++K ++K+ KK++++
Sbjct: 268 EEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 31.8 bits (73), Expect = 0.089
Identities = 11/57 (19%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 6 SKLIKEKKKKKKKKKK---KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+ ++ K +++++ ++KK++KKK++++ + + ++++K +K+ K++ RK
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 30.7 bits (70), Expect = 0.27
Identities = 12/52 (23%), Positives = 34/52 (65%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+LS + K K ++++++K K ++++++ ++K++KKK+++ K +K
Sbjct: 251 LKLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal.
This domain is found to the N-terminus of bacterial
signal peptidases of the S49 family (pfam01343).
Length = 154
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK 45
KK+ K +K +KK +K K K +K K+++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 36.4 bits (85), Expect = 0.002
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKK 42
KE K +K +KK +K K K +KKK + K +
Sbjct: 66 KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKK 44
+ L+ +K+ K +K +KK +K K K +KK KE+ K +
Sbjct: 59 EAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 36.0 bits (84), Expect = 0.002
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKK 43
E + L K++ K +K +KK +K K K +KKK +E K +
Sbjct: 58 LEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 35.6 bits (83), Expect = 0.003
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNL 36
EL K +KK +K K K +KKK KK++ K L
Sbjct: 67 ELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRL 99
Score = 34.4 bits (80), Expect = 0.007
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+L + ++ KK+ K +K +KK +K K K +KKK KK++ K +
Sbjct: 53 DLKESLEAALLDKKELKAWEKAEKKAEKAKA---KAEKKKAKKEEPKPR 98
Score = 31.3 bits (72), Expect = 0.096
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 21 KKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
KK+ K +K +KK K K +KKK KK + K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 29.4 bits (67), Expect = 0.41
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNY 61
E++ L +E K K+ + KK+ K +K K +K K K +K K K + + + +
Sbjct: 43 EITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLF 100
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 37.3 bits (87), Expect = 0.001
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
KK KK+ + KKKKK +KK K+K K + K+ + +S R R+
Sbjct: 1308 KKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRR 1355
Score = 36.2 bits (84), Expect = 0.003
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
E ++ KE++ K K K K K +K K KKK+ K+ K KK + + +R +
Sbjct: 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSD 1204
Score = 35.4 bits (82), Expect = 0.008
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
KE K+++ K K K K K +K K ++KKKK K+KK S K
Sbjct: 1147 VEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKR 1200
Score = 35.4 bits (82), Expect = 0.008
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
KKK KK+ + KKKKK +K ++KK K + K+ R +
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRR 1355
Score = 34.6 bits (80), Expect = 0.014
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
SK KKK KK+ + KKKKK + KKK K + K S+ R
Sbjct: 1300 SKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLL 1353
Score = 32.7 bits (75), Expect = 0.061
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E + ++EK+ K+++ K K K K K +K L K++KKKKK K K
Sbjct: 1140 ALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKA 1192
Score = 32.7 bits (75), Expect = 0.067
Identities = 18/73 (24%), Positives = 39/73 (53%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ + ++E+++ ++K+ K+++ K K K K + +++ K KKK+KK KK S + +K
Sbjct: 1136 KFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVV 1195
Query: 64 TNICHGEQTLLTS 76
N +
Sbjct: 1196 GNSKRVDSDEKRK 1208
Score = 31.2 bits (71), Expect = 0.20
Identities = 16/65 (24%), Positives = 26/65 (40%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
+ +K K KKK+KKKKK K KK + K+ + +K + K +
Sbjct: 1163 KGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSG 1222
Query: 66 ICHGE 70
+
Sbjct: 1223 SDQED 1227
Score = 30.8 bits (70), Expect = 0.29
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K +K++ + KKKKK +KK +KK K+ + ++ + R++K
Sbjct: 1307 KKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKK 1360
Score = 30.8 bits (70), Expect = 0.30
Identities = 18/60 (30%), Positives = 24/60 (40%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
L K K K +K K KKK+KKKKK K K+ + ++ K K
Sbjct: 1158 LKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKK 1217
Score = 29.6 bits (67), Expect = 0.56
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
SK + K KKK KK+ + +KKKK +KK +KK + R K +
Sbjct: 1287 PPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASA 1346
Score = 29.6 bits (67), Expect = 0.63
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
L + KKKKK +KK +KKK K + K+ + + ++ + KK
Sbjct: 1314 LEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDS 1363
Score = 28.5 bits (64), Expect = 1.6
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
L KKKKK +KK +KKK K + K+ + + + ++ +K K S
Sbjct: 1313 RLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDS 1363
Score = 28.5 bits (64), Expect = 1.7
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
+ K KKK KK+ + +L KKKKK +KKT +K K + R +
Sbjct: 1294 GESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASAS 1347
Score = 27.7 bits (62), Expect = 2.6
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+L K +KK+KKKKK K KK + +K+K K K
Sbjct: 1168 KLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKS 1218
Score = 27.7 bits (62), Expect = 3.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 2 FFELSKLIKEKKKKKKKK---KKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
E S +KKKK +KK KKK K + K+ ++ ++ +KKK +
Sbjct: 1313 RLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDS 1363
Score = 27.3 bits (61), Expect = 4.1
Identities = 16/65 (24%), Positives = 25/65 (38%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ KKK+KKKKK K KK N + +K+K K +K+
Sbjct: 1163 KGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSG 1222
Query: 61 YTKTN 65
+ +
Sbjct: 1223 SDQED 1227
Score = 26.5 bits (59), Expect = 7.5
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
++ + K KKK KK+ KKKKK KK +++++ K
Sbjct: 1283 YSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSK 1338
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 36.4 bits (85), Expect = 0.002
Identities = 10/58 (17%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
++ ++ +++ KK++ +K+K +++ ++ K K +KK K ++++ ++ ++I
Sbjct: 110 VQAQRAEQQAKKREAAGEKEKAPRRE---RKPKPKAPRKKRKPRAQKPEPQHTPVSDI 164
Score = 32.2 bits (74), Expect = 0.054
Identities = 9/45 (20%), Positives = 26/45 (57%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
K K + ++ +++ KK++ ++ ++++K K K K+R+ +
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRA 151
Score = 31.0 bits (71), Expect = 0.14
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+E +K+K ++++K K K +KK + +K + + S+
Sbjct: 122 REAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISE 166
Score = 30.7 bits (70), Expect = 0.21
Identities = 7/46 (15%), Positives = 20/46 (43%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+++K ++++K K K +KK+K + + + +
Sbjct: 127 EKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQA 172
Score = 30.7 bits (70), Expect = 0.21
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
EK+K ++++K K K +KK+K + E + ++ + + K+
Sbjct: 126 GEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVKAGKSA 181
Score = 30.3 bits (69), Expect = 0.27
Identities = 11/49 (22%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
K K + ++ +++ KK++ +++K ++++K K K+ R++RK +
Sbjct: 107 KAKVQAQRAEQQAKKREAAG---EKEKAPRRERKPKPKAPRKKRKPRAQ 152
Score = 27.2 bits (61), Expect = 2.8
Identities = 9/52 (17%), Positives = 25/52 (48%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
E + ++ ++++K K K +KK+K + +K + + T ++ +
Sbjct: 123 EAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVK 174
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 36.7 bits (85), Expect = 0.002
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
+KK K KKK K K K KK + KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAGP 786
Score = 35.6 bits (82), Expect = 0.006
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
EKK K KKK K K K KKK+ K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 34.4 bits (79), Expect = 0.018
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKK 44
K K KKK K K K KKK K K KK+
Sbjct: 750 KTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 34.0 bits (78), Expect = 0.018
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
++K K +KK K KKK K K +K+K K K KK TKK+
Sbjct: 736 ITKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 33.6 bits (77), Expect = 0.033
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 20 KKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+KK K KKK K K KKK K K K KR
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 32.5 bits (74), Expect = 0.067
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 22 KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
+KK K KKK K KKK K KK+ ++R
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 32.5 bits (74), Expect = 0.079
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 21 KKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYT 62
+KK K KKK K + KKK K K+KK +K+R YT
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAGPLYT 789
Score = 31.7 bits (72), Expect = 0.13
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 25 KKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+KK K KKK K K K KKK+K KSK+ +K
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAGPL 787
Score = 31.7 bits (72), Expect = 0.13
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKK 42
K K KKK K K K KKK K K +K+
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 36.2 bits (84), Expect = 0.003
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
M+ + I+ K KKKKKKKKK KK K K L +++K + K K ++ +R ++K
Sbjct: 240 MYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKK 298
Score = 34.3 bits (79), Expect = 0.016
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
K+KKKKKK KK K KK K++K +K KK +++++ KK
Sbjct: 257 KKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 28.1 bits (63), Expect = 1.8
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKK----KKKNLIKEKKKKKKKKKTKKKSKRRRR 58
L + K+ + K KKKKKKKK KK K K++K + KK++RR R
Sbjct: 236 SLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRER 294
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 35.6 bits (82), Expect = 0.005
Identities = 17/53 (32%), Positives = 19/53 (35%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
K KK K K KK KK KK K KK KK+ + K
Sbjct: 233 KTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGA 285
Score = 35.2 bits (81), Expect = 0.006
Identities = 20/60 (33%), Positives = 26/60 (43%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
+K K+ KK KK KK K KK KK K K K TK K+K +++
Sbjct: 246 AKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAA 305
Score = 34.9 bits (80), Expect = 0.010
Identities = 20/55 (36%), Positives = 23/55 (41%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
K K KK KKK K KK K KK KKT KK+ ++ K K
Sbjct: 216 SAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKA 270
Score = 34.5 bits (79), Expect = 0.013
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+K KKK K KK K K K KK KK K K+ ++ K K
Sbjct: 223 AKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKA 277
Score = 34.5 bits (79), Expect = 0.014
Identities = 21/59 (35%), Positives = 24/59 (40%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
S K KK KKK K KK K KK KK KK KK+ + +K K
Sbjct: 216 SAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKA 274
Score = 32.6 bits (74), Expect = 0.050
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
+K K+ KK KK K KK KK K K K K K K+ +K +
Sbjct: 249 AKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSK 308
Score = 32.6 bits (74), Expect = 0.056
Identities = 17/53 (32%), Positives = 19/53 (35%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
KK K K K K K K K K KK K K +K +R K
Sbjct: 272 KKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKK 324
Score = 32.6 bits (74), Expect = 0.061
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K KK K K KK KKK KK K K +K+ ++
Sbjct: 206 PAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKT 255
Score = 32.6 bits (74), Expect = 0.062
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
K +K+ K KK KK K K K + K K KKK KK + + K K
Sbjct: 257 KKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKA 315
Score = 32.2 bits (73), Expect = 0.088
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK--KKKTKKKSK 54
K K KK KK KK KK K + K KK K K K +K
Sbjct: 243 KTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAK 287
Score = 31.8 bits (72), Expect = 0.10
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
KK K KK K K KK KK KK K KK+ ++ K K
Sbjct: 229 KKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKA 281
Score = 31.4 bits (71), Expect = 0.12
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
K +K+ KK K K K K K K K+K KK +K K+ + K K
Sbjct: 265 KAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAK 321
Score = 31.4 bits (71), Expect = 0.13
Identities = 15/49 (30%), Positives = 18/49 (36%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
KK K K KK K K KKK K + KK+ + K
Sbjct: 199 AKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAK 247
Score = 31.4 bits (71), Expect = 0.14
Identities = 17/56 (30%), Positives = 20/56 (35%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
KK KK K KK KK K K K K K KK ++ +K
Sbjct: 255 TAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAK 310
Score = 31.4 bits (71), Expect = 0.15
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
+K + K K K KKK KK K K K K+ K KK KK +K+R
Sbjct: 282 AKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKR 332
Score = 31.0 bits (70), Expect = 0.17
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 6 SKLIKEKKKKKKKKKKK--KKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+K + KK KK KK KK K KK K K K K K K + +K K
Sbjct: 242 AKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGK 301
Query: 64 T 64
Sbjct: 302 K 302
Score = 29.5 bits (66), Expect = 0.64
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
K K K K KKK KK K + K+ K K KK ++R
Sbjct: 287 KATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTKKR 332
Score = 27.2 bits (60), Expect = 3.5
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+ KK K K KK K +K KKK KT +K+
Sbjct: 194 VGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKK 240
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 35.2 bits (81), Expect = 0.006
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
KE KK KK + K K K KK KK + K + K+
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKK--GSVSNRSVKMPGIDPRSKPDWKS 193
Score = 32.9 bits (75), Expect = 0.039
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
++ KK KK + K K K KK K KK + K R K K+
Sbjct: 143 EAKEVKKPKKGQSPKVPKAPKPKKPK-----KKGSVSNRSVKMPGIDPRSKPDWKS 193
Score = 32.2 bits (73), Expect = 0.071
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
I + K+ KK KK + K K K KK KKK + + K +K
Sbjct: 133 EVPPISTAPPEAKEVKKPKKGQSPKVPKAP---KPKKPKKKGSVSNRSVKMPGIDPRSKP 189
Score = 28.3 bits (63), Expect = 1.5
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
K + K K K KK KKK + + + K K+
Sbjct: 150 PKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWKS 193
Score = 26.8 bits (59), Expect = 5.2
Identities = 10/40 (25%), Positives = 12/40 (30%)
Query: 28 KKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNIC 67
K+ KK + K K K K K K K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGI 183
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 35.3 bits (81), Expect = 0.008
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK-----------TKKKS 53
LS IK + K+K K+K K+ K + ++ E ++ K++ KK
Sbjct: 787 LSTTIKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKK 846
Query: 54 KRRRRKNYTK 63
K + N T+
Sbjct: 847 KPYKVDNMTR 856
Score = 29.1 bits (65), Expect = 1.1
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 22 KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
K + K+K K+K ++ K + + + ++ K
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGI 835
>gnl|CDD|144411 pfam00802, Glycoprotein_G, Pneumovirus attachment glycoprotein G.
This family includes attachment proteins from
respiratory synctial virus. Glycoprotein G has not been
shown to have any neuraminidase or hemagglutinin
activity. The amino terminus is thought to be
cytoplasmic, and the carboxyl terminus extracellular.
The extracellular region contains four completely
conserved cysteine residues.
Length = 263
Score = 35.0 bits (80), Expect = 0.008
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+ K I EKK K K KK K K KK K + K K+ T + K TKT
Sbjct: 176 ICKRIPEKKPGKAPTTKPTKKPKPKTTKKDT--KTQTTKSKEATTHHPTSEPT-KLTTKT 232
Query: 65 NICHGEQTLLTS 76
N + T L++
Sbjct: 233 NTTTPQFTPLST 244
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 35.0 bits (81), Expect = 0.008
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
L +E++ KKKK+ K K K+ KKKKK K K KK R
Sbjct: 78 LQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSER 126
Score = 34.7 bits (80), Expect = 0.008
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
E +E+ KKKK+ K K K+ KKKKKK+ K K + KKKS+R
Sbjct: 75 EKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSER 126
Score = 34.3 bits (79), Expect = 0.011
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+K+ +++++ KKKK+ K K K+ K+KKK K+ K + R +K +
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERI 127
Score = 32.4 bits (74), Expect = 0.065
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+KKK+ K K K+ KKKKKK K + KK ++
Sbjct: 84 LKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERIS 128
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 34.8 bits (81), Expect = 0.009
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
E+ + +K KK+ K K +KKK+K++ K K K K +
Sbjct: 51 EMKEELKAALLDKKELKAWHKAQKKKEKQEA---KAAKAKSKPR 91
Score = 34.8 bits (81), Expect = 0.011
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
E++ L ++ K+ K++ K KK+ K K +KKK+K++ K K + R
Sbjct: 41 EVTNLNEQYKEMKEELKAALLDKKELKAWHK---AQKKKEKQEAKAAKAKSKPR 91
Score = 32.9 bits (76), Expect = 0.040
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNL 36
L K + K +KKK+K++ K K K K L
Sbjct: 61 LDKKELKAWHKAQKKKEKQEAKAAKAKSKPRL 92
Score = 31.7 bits (73), Expect = 0.12
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
K+ K++ K KK+ K K +KKK+K++ K+K + R
Sbjct: 50 KEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 27.5 bits (62), Expect = 2.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 20 KKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K+ K++ K KK L K +KKK+K + K+ + + K
Sbjct: 50 KEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation
factor 3 (eIF3). In yeast it is called Hcr1. The
Saccharomyces cerevisiae protein eIF3j (HCR1) has been
shown to be required for processing of 20S pre-rRNA and
binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 34.2 bits (79), Expect = 0.012
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
++++K+++K K K K KK K K KEK K++K++K ++
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRE 83
Score = 33.5 bits (77), Expect = 0.026
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ ++K+++K K K K K +K K ++K+K K +K+ K R
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELE 85
Score = 31.9 bits (73), Expect = 0.082
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
E ++K+++K K K K KK K K ++K+K K++ ++K R
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKA---KIEEKEKAKREKEEKGLREL 84
Score = 30.4 bits (69), Expect = 0.25
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKK 32
L+ LI EK K +K K KKKK K K K
Sbjct: 187 LNVLINEKLKAEKAAKGGKKKKGKAKAK 214
Score = 30.4 bits (69), Expect = 0.28
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K K K KK K K ++K+K K++ K ++ ++ + +++ R +
Sbjct: 50 AKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLR 100
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 34.7 bits (80), Expect = 0.013
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
L++LI E ++ + K+ KKKKKKKKKKKKKN + S + N
Sbjct: 40 LAELISENQEAENKQNNKKKKKKKKKKKKKN--LGEAYDLAYDLPVVWSSAAFQDN 93
Score = 32.4 bits (74), Expect = 0.067
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKK------KKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
K K++ K+K KKK KK KK + + +E + K+ KK KKK K++++KN
Sbjct: 11 KQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKN 70
Query: 61 Y 61
Sbjct: 71 L 71
Score = 31.6 bits (72), Expect = 0.12
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
EL +E + K+ KKKKKKKKKKKKK +
Sbjct: 42 ELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSA 88
Score = 27.0 bits (60), Expect = 4.8
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 18/88 (20%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIK------------------EKKKKKKKKKTKKK 52
E + + K++K++ K+K KKK K K + K+ KKK KKK
Sbjct: 4 ENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKK 63
Query: 53 SKRRRRKNYTKTNICHGEQTLLTSVSFE 80
K++++ ++ + + +S +F+
Sbjct: 64 KKKKKKNLGEAYDLAYDLPVVWSSAAFQ 91
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 34.4 bits (78), Expect = 0.014
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK------RRRRK 59
S K +KK K+K + +K + K ++ N +K KK+ + + KK + RR RK
Sbjct: 375 SGCAKSGEKKVKRKARLEKMRAKCRRAVGNRMKGSMKKRVRSRAKKFGEAAKSGVRRYRK 434
Query: 60 N 60
N
Sbjct: 435 N 435
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 34.5 bits (79), Expect = 0.015
Identities = 20/51 (39%), Positives = 36/51 (70%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+EK+K++ K++KKKKK+K K++ K KE+ K+K+ K K+K K ++ +
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEE 156
Score = 34.1 bits (78), Expect = 0.017
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
KE+ K++KKKKK+K K++ K +K K KEK+ K+K+K K+K R
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Score = 33.7 bits (77), Expect = 0.026
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
KE K + K+++K+K++ K++KKKK +++ K +K K + K KR ++
Sbjct: 96 KEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEK 146
Score = 33.7 bits (77), Expect = 0.027
Identities = 16/50 (32%), Positives = 35/50 (70%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+ K+++K+K++ K++KKKKK+K K K++K K++ K+ + ++ + K
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Score = 33.3 bits (76), Expect = 0.039
Identities = 17/50 (34%), Positives = 35/50 (70%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
++ K++KKKKK+K K++ K +K K+ +++ K+K+K+ +KK + R +
Sbjct: 111 EQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR 160
Score = 32.9 bits (75), Expect = 0.045
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
KE+KKKKK+K K++ K +K K++ K K+K+K+K+K ++ + R
Sbjct: 114 KEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162
Score = 32.9 bits (75), Expect = 0.048
Identities = 20/50 (40%), Positives = 37/50 (74%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
KE++K+K++ K++KKKKK+K K++ K K++ K+K+ K+K K + +K
Sbjct: 104 KEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153
Score = 32.6 bits (74), Expect = 0.058
Identities = 15/51 (29%), Positives = 36/51 (70%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
KE+ K+K+ K+K+K+K+KK ++ ++ +EKK+++ + K++ K +++
Sbjct: 134 KEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPP 184
Score = 32.6 bits (74), Expect = 0.061
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
E K+++K+K++ K++KKKKK+K + +K K++ K K+ K + ++
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Score = 31.4 bits (71), Expect = 0.14
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+EKKKKK+K K++ K +K K++ K+ ++K+K+K+KK ++ R K
Sbjct: 115 EEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165
Score = 31.4 bits (71), Expect = 0.17
Identities = 15/51 (29%), Positives = 36/51 (70%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+++K++ K++KKKKK+K K++ K + +E K+K+ K+ +K+ +++ +
Sbjct: 107 EKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157
Score = 31.0 bits (70), Expect = 0.21
Identities = 15/54 (27%), Positives = 35/54 (64%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ + K+++K+K++ K++KKKKK+ +E K +K K++ K+K + ++ +
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKE 151
Score = 31.0 bits (70), Expect = 0.23
Identities = 18/56 (32%), Positives = 38/56 (67%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
E K K K++ K+K+ K+K+K+K+KK ++ +E++KK+++ + K + K+ +K
Sbjct: 126 EEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKK 181
Score = 30.6 bits (69), Expect = 0.25
Identities = 15/57 (26%), Positives = 35/57 (61%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+K K+ K + K+++K+K++ K++KK ++ K++ K +K K+++K +R
Sbjct: 87 GPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143
Score = 29.1 bits (65), Expect = 0.84
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K++K K++ K +K K++ K+K+ K KEK+KK ++ + +++ K+R R
Sbjct: 120 KKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERV 169
Score = 29.1 bits (65), Expect = 0.98
Identities = 14/61 (22%), Positives = 35/61 (57%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICHG 69
KEK+KK ++ + ++++KK+++ + K+ K+ KKK K K+ + +++ + +
Sbjct: 148 KEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGK 207
Query: 70 E 70
Sbjct: 208 P 208
Score = 29.1 bits (65), Expect = 1.00
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K K K K+ K + K+++K+K +KE+KKKKK+K ++ R+ ++
Sbjct: 86 KGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKE 135
Score = 28.3 bits (63), Expect = 1.5
Identities = 16/56 (28%), Positives = 35/56 (62%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYT 62
K KEK K++ K +K K++ K+K+ K+ +++KK ++ + +++ KR R + +
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKS 173
Score = 28.3 bits (63), Expect = 1.6
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
KEK+K+KK ++ + ++++KK+++ + + KK KKK KKK K
Sbjct: 146 KEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEK 195
Score = 28.3 bits (63), Expect = 1.7
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
KEK+K+K+KK ++ + ++++KK+++ K + KK KKK K K + +
Sbjct: 144 KEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQR 197
Score = 27.9 bits (62), Expect = 2.2
Identities = 14/49 (28%), Positives = 32/49 (65%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
K+K+K+K+KK ++ + ++++KK+ ++ K + KK K K +K++
Sbjct: 142 PPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEP 190
Score = 27.9 bits (62), Expect = 2.5
Identities = 13/51 (25%), Positives = 33/51 (64%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+E++KK+++ + K + KK KKK N KE +++K+++ +++ + + +
Sbjct: 160 REEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEE 210
Score = 27.5 bits (61), Expect = 2.8
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ K ++ + K + KK KKK KKK+ +EK+++ ++ K K +
Sbjct: 162 EEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNE 215
Score = 27.5 bits (61), Expect = 3.0
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
EK K K K K+ K + K KEK++ K++KK KK+ + K
Sbjct: 81 EKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Score = 26.4 bits (58), Expect = 8.3
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
++ +K K K K K+ K ++ +E+K+K++ K+ KKK K + ++
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKE 126
Score = 26.4 bits (58), Expect = 8.3
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+LS K+ +K K K K K+ K KE++K+K++ K +KK K+ + K K
Sbjct: 70 KLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Query: 64 T 64
Sbjct: 130 D 130
Score = 26.0 bits (57), Expect = 9.1
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+E+ + K + KK KKK KKK+ +++++ ++ K + +
Sbjct: 166 RERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEE 216
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 33.5 bits (77), Expect = 0.027
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ ++K K K ++ +K + K+KKK KE+KKKK+ ++ +++ ++ +
Sbjct: 300 ILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQA 359
Query: 61 YTK 63
K
Sbjct: 360 TDK 362
Score = 30.0 bits (68), Expect = 0.44
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
L K+I + K+K K K ++ +K +KEKKK+KKK++ KKK
Sbjct: 295 RLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQ 344
Score = 30.0 bits (68), Expect = 0.48
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
++ + K+K K K ++ +K + ++KK+KKK++K KK+ +R
Sbjct: 299 MILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIER 347
Score = 29.6 bits (67), Expect = 0.59
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYT 62
L +K KK + K+K K K + ++ + K+KK +KK + +++K
Sbjct: 287 KALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIE 346
Query: 63 KTN 65
+
Sbjct: 347 RLE 349
Score = 28.9 bits (65), Expect = 0.94
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 5 LSKLIKEKKKKKKKKKKK----KKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
L + IK K + K+ KK + K+K K ++ +K + K KKK K++ K
Sbjct: 282 LQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEK 340
Score = 28.9 bits (65), Expect = 1.0
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+ K ++ +K + K+KKK+KKK K+K+ ++ +++ +K + K KT
Sbjct: 314 KSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENKT 367
Score = 27.3 bits (61), Expect = 3.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K ++K K K + K+ KK ++ + K+K K K +R K
Sbjct: 281 KLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEK 323
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 33.6 bits (78), Expect = 0.029
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
IKE +++ K+ ++ KK+ + KK+ L +++ K + + +K+ + RR +
Sbjct: 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE 83
Score = 30.9 bits (71), Expect = 0.22
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
E ++++E KK+ + KK+ + K++ K EK+ ++++ + +K KR +K
Sbjct: 38 EEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQK 94
Score = 26.7 bits (60), Expect = 5.7
Identities = 10/50 (20%), Positives = 26/50 (52%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+ KK+ + K++ K + + +K+ + + +K +K+ +K + RK
Sbjct: 52 EAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRK 101
Score = 26.7 bits (60), Expect = 5.7
Identities = 13/54 (24%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
E K ++E++ + +K +K+ +K++ +K L+ EK++++ +KK K+ ++++
Sbjct: 72 EFEKELRERRNELQKLEKRLLQKEENLDRKLELL-EKREEELEKKEKELEQKQQ 124
Score = 26.7 bits (60), Expect = 6.6
Identities = 9/55 (16%), Positives = 33/55 (60%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ K + +K++++ +KK+K+ ++K+ +++K+++ ++ ++ + R T
Sbjct: 98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTA 152
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 33.1 bits (76), Expect = 0.037
Identities = 15/45 (33%), Positives = 32/45 (71%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
K K++ +++K++K+ K++K L K KK+++KKKK +K ++ +
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 32.7 bits (75), Expect = 0.054
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKK 43
+ KE+K+ K++K+ +K KK+++KKKK L K +K K
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 32.7 bits (75), Expect = 0.061
Identities = 15/45 (33%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
KL +++ +++K++K+ K++K+ +K K +E+KKKK+ +K +K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKK--QEEKKKKELEKLEK 588
Score = 31.9 bits (73), Expect = 0.099
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK 45
L +EK++K+ K++K+ +K KK+++KK EK +K K
Sbjct: 553 LQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 31.5 bits (72), Expect = 0.14
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K K++ +++K++K+ K+ K KK+++KK K+ K + K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 31.2 bits (71), Expect = 0.21
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
+ +K++ +++K++K+ K++K+ +K +EKKKK+ +K K K
Sbjct: 547 LDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKI 591
Score = 28.1 bits (63), Expect = 2.1
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLI 37
E + +KE+K+ +K KK+++KKKK+ +K +K I
Sbjct: 558 EEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKI 591
Score = 26.1 bits (58), Expect = 9.6
Identities = 8/43 (18%), Positives = 26/43 (60%)
Query: 21 KKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
K K++ +++K++ +++K+ +K K +++ K++ + K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 32.8 bits (75), Expect = 0.037
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
KE+K+ K KK K K KK KK L EKK + + + + K
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKK 151
Score = 26.7 bits (59), Expect = 5.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
KK K K KK KK + +KK N + + +KK
Sbjct: 117 KKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAA 156
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 33.2 bits (75), Expect = 0.037
Identities = 12/48 (25%), Positives = 31/48 (64%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
+EK++ + ++ K+++ KK+K+++ I++ K+ KK+ K++R
Sbjct: 1030 EEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 30.1 bits (67), Expect = 0.43
Identities = 12/55 (21%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKK--KKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+++KE+ K +++K++ + ++ K+++ KK +E++ +K K+ ++R K
Sbjct: 1020 RIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLK 1074
Score = 29.3 bits (65), Expect = 0.80
Identities = 13/57 (22%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKK-KKKKKTKKKSKRRRRKNYTKTN 65
+EK + K + K++ K +++K++ ++L + K+++ KK+K +++ R+ + K
Sbjct: 1012 REKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEM 1068
Score = 27.0 bits (59), Expect = 4.6
Identities = 12/51 (23%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK--KKTKKKSKRRRRK 59
E ++K + K + K++ K +++K+ + ++ K+++ KK K++ +R R+
Sbjct: 1010 ECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKT 1060
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 33.2 bits (76), Expect = 0.038
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+L KLI+ + K K K K K K+ + K +K + K+ RK
Sbjct: 231 DLFKLIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRK 286
Score = 30.9 bits (70), Expect = 0.23
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
EL L K + + K K K K K K+ ++K +K +K + KR
Sbjct: 228 ELIDLFKLIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKR 279
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 32.2 bits (74), Expect = 0.040
Identities = 17/57 (29%), Positives = 38/57 (66%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
E L +++KKKK+K+ KK++ + ++++ + +K+K+ +K +KK KRR+++
Sbjct: 71 VEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKE 127
Score = 31.5 bits (72), Expect = 0.073
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
KEKKKK+K+ KK++ + ++++ EK+K+ +K + KK +R++ K
Sbjct: 75 LLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKE 129
Score = 28.0 bits (63), Expect = 1.2
Identities = 15/54 (27%), Positives = 37/54 (68%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
K +K+ ++K+KKKK+K+ KK++ L +++ K++ + +K++++ R K + +
Sbjct: 70 KVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKR 123
Score = 27.2 bits (61), Expect = 2.1
Identities = 16/55 (29%), Positives = 37/55 (67%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
L K + +K+ ++K+KKKK+K+ KK++ ++ ++++ K++ K+K R+ R+
Sbjct: 64 LKKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNRE 118
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 33.1 bits (76), Expect = 0.041
Identities = 19/49 (38%), Positives = 22/49 (44%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
FF +K +K K K KKKKKK K +E K KKK K
Sbjct: 345 FFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 31.5 bits (72), Expect = 0.12
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 5 LSKLIKEKKKKK----------KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ +L K K KK KK KK K K KKKK K + + KS
Sbjct: 327 IERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSS 386
Query: 55 RRRRKN 60
+++
Sbjct: 387 GKKKVK 392
Score = 31.5 bits (72), Expect = 0.14
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
KK KK K K KKKKKK K + ++ K+ K K ++
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 31.1 bits (71), Expect = 0.16
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
L KK KK K K KKKKKK + + + + ++ K + KK ++
Sbjct: 342 LDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 26.1 bits (58), Expect = 7.4
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
K E++ +K ++ KK K KK + + + KK KK +K K K++++K
Sbjct: 316 KNFNEERVEKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKA 369
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 32.7 bits (75), Expect = 0.047
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 2 FFELSKLIKEKKKKK----KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+ K+++ ++ + + +KK+K K++ KKK + K K KK K K+
Sbjct: 225 KYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 29.6 bits (67), Expect = 0.60
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+ L + K+K++ ++ + + + +KK+K K+ + K+K K+ K K KK
Sbjct: 223 LDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKK 274
Score = 28.8 bits (65), Expect = 1.00
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNL 36
+ KKKK K+ K K KK K K +
Sbjct: 257 EIKKKKPKESKGVKALKKVVAKGMKKI 283
Score = 27.7 bits (62), Expect = 2.2
Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 4 ELSKLIKEKKKKKKKK-KKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYT 62
+L+K + K K K+ KKKK++ + ++ + + +KK+ K+ ++++ +
Sbjct: 207 LYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKES 266
Query: 63 K 63
K
Sbjct: 267 K 267
Score = 27.3 bits (61), Expect = 2.9
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
F L K +KE KKKK++ ++ + + + +KK+ +E KKKK K+ K+
Sbjct: 220 FKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKAL 272
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 33.0 bits (75), Expect = 0.049
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
K KK KK KKK KK K + ++ KK KK +K+ R+
Sbjct: 1004 KAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRK 1051
Score = 30.3 bits (68), Expect = 0.36
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
KK KK KK KKK KK K+ +K KK KK R+
Sbjct: 1003 KKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARK 1046
Score = 29.6 bits (66), Expect = 0.68
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
KKK KK KK KK KK K+ KK KK +K ++
Sbjct: 993 KKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKK 1038
Score = 29.2 bits (65), Expect = 0.96
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR--RRK 59
KK KK KK KKK KK K +K KK KK +++ R+
Sbjct: 1003 KKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRKA 1052
Score = 29.2 bits (65), Expect = 1.0
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKK--KKKKTKKKSKRRRRK 59
K KK KK KK KK KK + K+ KK +K KK +K+ RK
Sbjct: 995 KVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARK 1046
Score = 28.0 bits (62), Expect = 2.0
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
K + KKK KK KK K +K KKK K +K+ RK K
Sbjct: 984 KAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKK 1038
Score = 26.1 bits (57), Expect = 8.8
Identities = 18/49 (36%), Positives = 21/49 (42%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
KKK KK KK KK KKK KK KK +++ K K
Sbjct: 993 KKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAK 1041
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 32.0 bits (73), Expect = 0.050
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKK 43
E K++K+ K+K K+KK+KKKKKKKKKKK + KKKK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.8 bits (70), Expect = 0.11
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
L++E+K K+ K+K K+KK+KKKKKK K+ KK KKK
Sbjct: 94 LVEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 32.8 bits (75), Expect = 0.052
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
L+ E++ K KK KK K KK +K KK KTKK +K+
Sbjct: 251 LLAERRAKGGPGKKPAKKATAAKAKKTT--AKKAAAKKAAKTKKAAKK 296
Score = 27.7 bits (62), Expect = 2.0
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 21 KKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
++ K KK KK + KK KK KK+ + ++
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKA 293
Score = 27.4 bits (61), Expect = 3.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 20 KKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
++ K KK KK K KK KK KK +K ++
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKK 292
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 31.8 bits (72), Expect = 0.055
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKK 33
EK KKKKKK KK KK KK KK
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.2 bits (68), Expect = 0.17
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKK 34
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.2 bits (68), Expect = 0.17
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKK 31
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 0.24
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKN 35
K KKKKKK KK KK KK KK+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 28.7 bits (64), Expect = 0.70
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKK 34
E +K KKKKKK KK KK KK K
Sbjct: 95 EPTEKPKKKKKKSKKTKKPKKSSK 118
Score = 27.9 bits (62), Expect = 1.3
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 16 KKKKKKKKKKKKKKKKKKKNL 36
K KKKKKK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 26.0 bits (57), Expect = 5.5
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKE 39
K KKKKKK KK KK KK+ K+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 32.4 bits (74), Expect = 0.072
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
KKKKKKKKK K+ + KK + ++KK+ ++ +
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGTFN 52
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 31.7 bits (72), Expect = 0.073
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKN 35
K KKKK + K++KKKKK+KKKKKK
Sbjct: 143 KHKKKKHEDDKERKKKKKEKKKKKKR 168
Score = 31.3 bits (71), Expect = 0.11
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKN 35
K+ KKKK + K++KKKKK+KKKKK
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKK 167
Score = 31.0 bits (70), Expect = 0.15
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 6/42 (14%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
S+ +K +KK KKKK + K++KKKK KEKKKKKK+
Sbjct: 134 SEGLKGHEKKHKKKKHEDDKERKKKK------KEKKKKKKRH 169
Score = 31.0 bits (70), Expect = 0.15
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 27 KKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
KK KKKK KE+KKKKK+KK KKK
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKRHS 170
Score = 29.8 bits (67), Expect = 0.33
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKK 34
E K ++K KKKK + K++KKKKK+KKKK
Sbjct: 135 EGLKGHEKKHKKKKHEDDKERKKKKKEKKKK 165
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 32.3 bits (74), Expect = 0.076
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKK-KKKKKNLIKEKKKKKKK--------KKTKKKS 53
F + +EKKK KK +K+ + + KK+K L +K++ ++ K+
Sbjct: 77 FSTTTYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEELKEMV 136
Query: 54 KRRRRKNYTKT 64
+ + + KT
Sbjct: 137 ENVNSRIWEKT 147
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 32.0 bits (73), Expect = 0.078
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKE 39
E +KKK + KKK K KK + +L+ E
Sbjct: 149 TEILAEKKKPRSKKKSSKNSKKLRIDLVGE 178
Score = 27.3 bits (61), Expect = 3.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKK 31
+ E ++++ EKKK + KKK K KK +
Sbjct: 145 WCERTEILAEKKKPRSKKKSSKNSKKLRID 174
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 31.9 bits (73), Expect = 0.10
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
EL K +K+ ++K ++ + + +KK+++ +K KN +K KK KK
Sbjct: 99 ELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Score = 31.5 bits (72), Expect = 0.16
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNY 61
E+ I+E KK+ KK ++K ++ + + +KK+ +++ K K K KK +K+
Sbjct: 92 EIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLS 149
Score = 31.1 bits (71), Expect = 0.19
Identities = 14/58 (24%), Positives = 33/58 (56%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
F L + E + + ++ KK+ KK ++K ++ + I++K+++ +K K K K ++
Sbjct: 83 VFTLGEENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKL 140
Score = 30.7 bits (70), Expect = 0.29
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
EL + I +K+KK +K +K+ K+ + IK +K+ K+ + + +
Sbjct: 405 ELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLTN 454
Score = 28.4 bits (64), Expect = 1.3
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS--KRRRRKNYTK 63
+E + + + ++ KK+ KK ++K + L E +KK+++ + K + +K K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKK 143
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 31.4 bits (72), Expect = 0.11
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
K+KKKKKKKKK+ + ++KKKK + +E+K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 30.6 bits (70), Expect = 0.15
Identities = 17/35 (48%), Positives = 28/35 (80%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
K+KKKKKKKKK+ + ++KKKK ++ E++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 28.3 bits (64), Expect = 1.2
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 22 KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
K+KKKKKKKKK+ +EKKKK + +K+
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKE 112
Score = 27.1 bits (61), Expect = 2.7
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 23 KKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K+KKKKKKKKK+ E+KKKK ++K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKED 113
Score = 26.0 bits (58), Expect = 7.5
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
K+KKKKKKKKK+ + + K+ +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 31.5 bits (72), Expect = 0.11
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
EL K E+++ KKKKKKKKKK KK + + + +
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQV 221
Score = 30.8 bits (70), Expect = 0.18
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
L ++E++ KKKKKKKKKK KK + + +K K
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKR 231
Query: 65 NI 66
+I
Sbjct: 232 SI 233
Score = 30.0 bits (68), Expect = 0.39
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
E +K K+KKKKK KK + + + + KK K+R
Sbjct: 179 ERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRS 232
Score = 29.2 bits (66), Expect = 0.64
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+L+K + ++++ KKKKKKKKKK KK + T+ S + K
Sbjct: 170 ELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKK 226
Score = 28.1 bits (63), Expect = 1.9
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+ + + ++++ KKKKKKKKKK KK + + S + K
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKK 226
Score = 26.9 bits (60), Expect = 4.6
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICHGE 70
E + K + ++++ KKKKKKKKKK + +
Sbjct: 168 EVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKL 227
Query: 71 QT 72
+
Sbjct: 228 KK 229
Score = 26.5 bits (59), Expect = 5.8
Identities = 15/52 (28%), Positives = 20/52 (38%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
E+ L ++++ KKKKKKKKKK KK E
Sbjct: 168 EVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAG 219
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 31.7 bits (73), Expect = 0.11
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKN 35
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
Score = 31.4 bits (72), Expect = 0.15
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKK 32
+ +K++ KKKKK+KK KK + +K
Sbjct: 729 WLDLEKRRLKKKKKRKKVKKWEVEK 753
Score = 31.0 bits (71), Expect = 0.25
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 13 KKKKKKKKKKKKKKKKKKKKK 33
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.9 bits (63), Expect = 2.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKK 29
L K + KKKKK+KK KK + +K
Sbjct: 731 DLEKRRLKKKKKRKKVKKWEVEK 753
Score = 27.1 bits (61), Expect = 4.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 39 EKKKKKKKKKTKKKSKRRRRKNY 61
EK++ KKKKK KK K K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKIE 755
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 31.3 bits (71), Expect = 0.11
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKN 35
EKKKK K KK K K KK + KKK
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 30.6 bits (69), Expect = 0.21
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKK 33
+ K+KK K KK K K KK + KKK +
Sbjct: 89 VEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 28.3 bits (63), Expect = 1.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNL 36
KKK K KK K K KK + KKK +
Sbjct: 92 KKKGKSKKNKLKGKKDEDKKKAREG 116
Score = 27.9 bits (62), Expect = 1.7
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
++K +KKKK K KKN +K KK + KKK
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKA 113
Score = 27.9 bits (62), Expect = 1.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
++K +KKKK K KK K K+ + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.5 bits (61), Expect = 2.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKE 39
KKKK K KK K K KK + K +E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 26.3 bits (58), Expect = 5.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK 45
I ++K +KKKK K KK K K E KKK +
Sbjct: 78 ISWRRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 25.9 bits (57), Expect = 8.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 39 EKKKKKKKKKTKKKSKRRRRKNYTK 63
EKKKK K KK K K K+ K +
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAR 114
>gnl|CDD|217512 pfam03359, GKAP, Guanylate-kinase-associated protein (GKAP)
protein.
Length = 342
Score = 31.3 bits (71), Expect = 0.13
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
F EL +L K +KK KK K K + +EK ++ ++ R
Sbjct: 257 FDELQQL-KANDWQKKVPPPVPKKPAKGPIVKPAISREKSLDSSDRQRQEARSR 309
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 31.0 bits (71), Expect = 0.14
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
KKKK K+ K K KKK ++ L E +++K+KKK K
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHK 38
Score = 30.7 bits (70), Expect = 0.20
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
KKKK K+ K K KKK +++ + +++K+KKK KS R
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSR 45
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 31.3 bits (71), Expect = 0.14
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
L+++ K K +K KKK K KKKK ++ K + K K KS
Sbjct: 114 LMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKS 159
Score = 29.4 bits (66), Expect = 0.76
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 21 KKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
+K K K +K KKK + + KKKKK K + + N +I
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKSI 160
Score = 28.6 bits (64), Expect = 1.3
Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 22/79 (27%)
Query: 4 ELSKLIKEKKKKKKKKKKK----------KKKKKK------------KKKKKKNLIKEKK 41
+L K K K+KKK KKK K +K K K KK
Sbjct: 68 DLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKK 127
Query: 42 KKKKKKKTKKKSKRRRRKN 60
K K T KK K+
Sbjct: 128 KITVNKSTNKKKKKVLSSK 146
Score = 27.5 bits (61), Expect = 3.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
+ KK +K KK KK K K+ K K K+KKK K K
Sbjct: 47 DINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKK 86
Score = 26.7 bits (59), Expect = 6.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKK 42
L + K K +K KKK K KKKKK + E K
Sbjct: 112 ISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIK 151
Score = 25.9 bits (57), Expect = 9.1
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
K + +K KKK K KKKKK + + K K K
Sbjct: 116 RKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 31.0 bits (71), Expect = 0.15
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKK------KKNLIKEKKKKKKKK 47
L+ +KK KK KK+K+K++K+ +K K +E K +K ++
Sbjct: 11 LVDKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAER 56
Score = 29.1 bits (66), Expect = 0.60
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
KKK KK KK+K+K++K+ +K + K+ + K K R
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAER 56
Score = 27.2 bits (61), Expect = 2.5
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K KK KK+K+K++K+ +K L + ++ K +K + + R+R+
Sbjct: 16 KAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQ 65
Score = 26.4 bits (59), Expect = 5.9
Identities = 11/53 (20%), Positives = 29/53 (54%), Gaps = 12/53 (22%)
Query: 7 KLIKEKKKKKKKKKKK------------KKKKKKKKKKKKNLIKEKKKKKKKK 47
K KEK+K++K+ +K ++ K +K ++ + L ++++ + ++K
Sbjct: 19 KAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein
family shows weak but suggestive similarity to
translation initiation factor SUI1 and its prokaryotic
homologs.
Length = 173
Score = 31.0 bits (70), Expect = 0.16
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYT 62
+ +++K +K +K ++ +KKKK +K T K+ R +RK T
Sbjct: 55 TIGEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQKVTIKREPRTKRKFVT 105
Score = 27.5 bits (61), Expect = 2.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
K K+ +K ++ ++ KKKKK +K IK + + K+K T K
Sbjct: 63 KGEKDLLGIQKAQEAREGGKKKKKLPQKVTIKREPRTKRKFVTVIK 108
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 31.0 bits (71), Expect = 0.17
Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 4 ELSKLIKEKKK--KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
L+ L+K+ K +++K+ + KK+ ++ I E + + ++ +
Sbjct: 40 VLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTPELEAAGLWERLAFEK 95
Score = 26.0 bits (58), Expect = 7.5
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKK----KKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
L +L K+ + K K K KK L KK K +++ +
Sbjct: 5 ALGRLAKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEV 60
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 31.0 bits (71), Expect = 0.18
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
ELSK I K+ + ++ + K+ K+K ++ + + +
Sbjct: 54 ELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAE 97
Score = 27.9 bits (63), Expect = 1.9
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
EL +L E+ + K+ + K+ + ++ +KE K+K K+ +
Sbjct: 43 RELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAA 90
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 29.6 bits (67), Expect = 0.18
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 5/53 (9%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKK--KKKKKTKKKSK---RRRR 58
+ ++ ++ ++KKKKKKK KKK K I KK++ ++ K+ K SK R+RR
Sbjct: 31 KVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKEVKPDSKYTGRKRR 83
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 31.2 bits (70), Expect = 0.18
Identities = 13/54 (24%), Positives = 37/54 (68%), Gaps = 5/54 (9%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
SKL K++++ +K K++ ++K ++++++ EK+K+K++++ +++ R K
Sbjct: 575 SKLAKKREEAVEKAKREAEQKAREERER-----EKEKEKEREREREREAERAAK 623
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 30.9 bits (70), Expect = 0.19
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNIC 67
L+ E + K KK+K KK+K+ K++ IK K K S N+TK
Sbjct: 345 LLAEAARVKAKKEKLAKKRKQVSKEEAAAIK-AAGKAWYKTMISDSDYTEFDNFTK--WL 401
Query: 68 HGEQ 71
Q
Sbjct: 402 GVSQ 405
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 31.1 bits (71), Expect = 0.20
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
+E K+ + +K+ + +KK +KK K IK+ K ++ +
Sbjct: 76 EELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEE 115
Score = 28.4 bits (64), Expect = 1.3
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K ++E +++ +++ +++ K+ + +K+ K+ +KK KK KK
Sbjct: 61 KPLEEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKD 108
Score = 27.6 bits (62), Expect = 2.5
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
+ +KK +KK KK KK K ++ + + + + R R
Sbjct: 89 EAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEPPLRPR 131
Score = 27.2 bits (61), Expect = 3.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKK 43
E EKK +KK KK KK K ++ + L++ + ++
Sbjct: 84 EKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Score = 26.8 bits (60), Expect = 4.4
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ +KE + +K+ + +KK +KK K K KK K ++ ++
Sbjct: 76 EELKEYEAEKEIWEAEKKGLEKKAK------KAIKKGKDEEALAEELL 117
Score = 26.5 bits (59), Expect = 7.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
EK+ + +KK +KK KK KK K+ ++ + + + + R R
Sbjct: 83 AEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEPPLRPR 131
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex
which functions in messenger ribonucleoprotein
metabolism and plays a role in preventing the
transcription-associated genetic instability. Tho2,
along with four other subunits forms THO.
Length = 296
Score = 30.8 bits (70), Expect = 0.22
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK-KKTKKKSKRRR 57
L K IKE KKKK+KK+ K K L +E KK + +KTKK+ +
Sbjct: 35 RLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKKRLSEEK 89
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 30.9 bits (71), Expect = 0.22
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
++ L K K K K K K ++ K+K KK + +++
Sbjct: 603 YKFDNLTGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
Score = 30.5 bits (70), Expect = 0.29
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
K K K K K ++ + ++ K+K K R N K
Sbjct: 609 TGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 30.5 bits (69), Expect = 0.22
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
E K KE K+ ++K+ K KK+KK+KK+K + ++ KKK K TK +K+ +K TK
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTK 153
Query: 64 TNI 66
Sbjct: 154 KEE 156
Score = 28.2 bits (63), Expect = 1.2
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNY 61
F E S+ +++ K+ ++K+ K KK+KK+KK+ + EK KKK KT K + ++ K
Sbjct: 91 FPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKT 150
Query: 62 TK 63
T
Sbjct: 151 TT 152
Score = 27.0 bits (60), Expect = 2.9
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ ++K+ K KK+KK+KK+KK +K K+ K K K K +K K
Sbjct: 102 VSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEGK 158
Score = 26.6 bits (59), Expect = 4.4
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E + K KK+KK+KK+KK +K KKK + KK KKT K +
Sbjct: 104 KETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Score = 26.3 bits (58), Expect = 5.2
Identities = 23/51 (45%), Positives = 29/51 (56%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E + IK KK+KK+KK+KK +K KKK K KK KK TKK+
Sbjct: 107 EEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEG 157
Score = 26.3 bits (58), Expect = 5.4
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
E+SK +EK+ K KK+KK+KK+KK +K K K KK KK+ ++ +
Sbjct: 101 EVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEG 157
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 29.9 bits (68), Expect = 0.23
Identities = 15/38 (39%), Positives = 30/38 (78%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
E ++ K++KKK+ K+KK+++K++K +K++KKK K +
Sbjct: 93 LEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 26.8 bits (60), Expect = 3.5
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K + ++ K++KKK+ K+KK KE+K++ K++K K K +
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 30.9 bits (69), Expect = 0.23
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ K + + + + ++K + K+++ KKK KKK++ +++ + K
Sbjct: 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
Score = 30.5 bits (68), Expect = 0.30
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
E K +E KKK KKK ++ KK + K + + + + K ++ ++++ K
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Score = 30.5 bits (68), Expect = 0.33
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
E K KKK ++ KK + K + + + + ++K + + KK+ +++
Sbjct: 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
Score = 30.1 bits (67), Expect = 0.42
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
E E + ++K + +KKK++ KKK K+ ++KKK + KKK++ ++K
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Score = 30.1 bits (67), Expect = 0.49
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
E +K E K + + + + ++K + KE+ KKK KK ++++ K
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
Score = 29.7 bits (66), Expect = 0.60
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
E K + KKK ++ KKK KKK ++ KK K + + + ++ + K
Sbjct: 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
Query: 64 T 64
Sbjct: 1373 K 1373
Score = 29.3 bits (65), Expect = 0.93
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+KK ++ KK + KKK ++ KK + K+ ++ KK + KKK++ ++ + K
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489
Score = 29.0 bits (64), Expect = 1.00
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
E +K + KKK ++ KK + K + + E ++K + KKK + +++ + K
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Score = 29.0 bits (64), Expect = 1.0
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
E K +E KK + KKK ++ KKK KK + KK + K + + K
Sbjct: 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Score = 28.6 bits (63), Expect = 1.7
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
K+K ++KKK + KKK ++ KKK L K KKK + KKK++ +++ + K
Sbjct: 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
Score = 28.2 bits (62), Expect = 2.2
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
E ++ + +KKK++ KKK KKK + K + KKK ++ KKK+ ++ K
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAK 1417
Score = 27.8 bits (61), Expect = 2.5
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
K+K ++ KKK + KK KKK K+ ++KKK + KKK++ ++ + K
Sbjct: 1396 AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
Score = 27.4 bits (60), Expect = 3.2
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
K+K ++ KK + KKK ++ KKK K+ ++ KK + K
Sbjct: 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
Score = 27.4 bits (60), Expect = 4.2
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
KK KKK + KKK ++KKK + K+K ++ KK KK +K
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 27.0 bits (59), Expect = 4.6
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
++ K+ ++ KKK ++ KK ++ +KK + L KE ++ KK ++ KKK ++K
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
Score = 27.0 bits (59), Expect = 4.6
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
+K KKK + KKK ++KKK K+ ++ KK + KKK++ ++
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 27.0 bits (59), Expect = 5.4
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+KK ++ KK ++ KKK ++ KK K+ ++ KK + KKK++ ++K
Sbjct: 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 27.0 bits (59), Expect = 5.5
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
EL K KKK + KKK ++KKK + KKK +K + KKK + K +K
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
Score = 26.6 bits (58), Expect = 5.8
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
EKKK++ KKK KKK ++KKK + K+K ++ KKK + K +K
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Score = 26.6 bits (58), Expect = 6.5
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+L K +++ K K ++ KK ++ KKK + K ++ +KK + KK +K
Sbjct: 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
Score = 26.6 bits (58), Expect = 6.8
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E K +E KK + KKK ++ KK + KKK +KK + KK + K K
Sbjct: 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 26.6 bits (58), Expect = 7.1
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
E ++ KE+ KKK KKK ++KKK + K +E KKK + K +K++
Sbjct: 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
Score = 26.3 bits (57), Expect = 9.0
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
E K +E KKK + KK + KKK + KK +K + KK + KK+ ++
Sbjct: 1487 EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
Score = 26.3 bits (57), Expect = 9.6
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKK--KKKKKKTKKKSKRRRRKNY 61
E K +E KK ++ KKK ++ KK + KKK +K KKK ++ KKK+ ++
Sbjct: 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507
Query: 62 TK 63
K
Sbjct: 1508 AK 1509
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 30.8 bits (69), Expect = 0.24
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
E SK ++ +KK KK KKK+KK+K+K K+KKK+ + K+
Sbjct: 182 ETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 30.0 bits (67), Expect = 0.52
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 22 KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
+KK KK KKK+KK KE+ K KKK+ KS
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 28.9 bits (64), Expect = 1.2
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
+S + + + K + ++ KK K KKK K++K+K++KKK KK R
Sbjct: 254 VSGTAPDSEPDEPKDAEAEETKKSPKHKKK---KQRKEKEEKKKKKKHHHHR 302
Score = 28.5 bits (63), Expect = 1.3
Identities = 9/30 (30%), Positives = 23/30 (76%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKE 39
+++ +K K++KKK++K+K+ +++ +L E
Sbjct: 91 RQRLEKDKREKKKREKEKRGRRRHHSLGTE 120
Score = 28.1 bits (62), Expect = 1.8
Identities = 10/27 (37%), Positives = 23/27 (85%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKK 33
KL +E++ +++ +K K++KKK++K+K+
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKR 109
Score = 27.7 bits (61), Expect = 2.3
Identities = 9/40 (22%), Positives = 28/40 (70%)
Query: 26 KKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
K +++++ + +++ K++KKK++ +K+ +RR T+++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESD 122
Score = 27.7 bits (61), Expect = 2.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
E + K + ++ KK K KKKK+ KE+KKKKKK +
Sbjct: 261 SEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGG 309
Score = 27.7 bits (61), Expect = 2.9
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K +K +KK KK KKK+KK+ KEK++ K KKK + K
Sbjct: 185 KSPEKGDVPAVEKKSKKPKKKEKKE---KEKERDKDKKKEVEGFK 226
Score = 27.0 bits (59), Expect = 5.3
Identities = 8/26 (30%), Positives = 23/26 (88%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKK 34
++E+++ +++ +K K++KKK++K+K+
Sbjct: 84 LEEERRHRQRLEKDKREKKKREKEKR 109
Score = 26.6 bits (58), Expect = 6.1
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNL 36
+KK+KK+K+K++ K KKK+ + K+L
Sbjct: 202 PKKKEKKEKEKERDKDKKKEVEGFKSL 228
Score = 26.6 bits (58), Expect = 7.2
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLI--KEKKKKKKKKKTKKKSKRRRRK 59
+L K + + +K +K + + K +K + K KK KKK+KK K+K + + +K
Sbjct: 162 DLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKK 219
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 31.0 bits (70), Expect = 0.24
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 4 ELSKL-IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
EL KL ++ K ++ ++K ++ + + K + ++ KK KKT KK+
Sbjct: 1164 ELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 26.4 bits (58), Expect = 7.2
Identities = 8/45 (17%), Positives = 22/45 (48%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
++ ++ + + KK ++ KK K+ KK + +T +++
Sbjct: 1179 REKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEET 1223
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 30.4 bits (69), Expect = 0.25
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 24 KKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
KK+K +++ + K+ K KKK K K+K +R +++ K
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVK 44
Score = 29.6 bits (67), Expect = 0.54
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNY 61
K+ K KKK KKK+K K+ ++ +KE +K +++ K+ ++ K Y
Sbjct: 18 AKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPGKFY 67
Score = 27.3 bits (61), Expect = 3.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 19 KKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
KK+K +++ + K+ K+K KKK+K K+
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKR 38
Score = 26.9 bits (60), Expect = 4.0
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+ KK+K +++ + K+ K KKK N K K K+ + K+ ++ R+
Sbjct: 2 LLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAERE 52
Score = 26.6 bits (59), Expect = 5.8
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
E KK+K +++ + K+ K K +KK+K K+ +
Sbjct: 1 ELLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAES 41
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 30.6 bits (69), Expect = 0.27
Identities = 11/55 (20%), Positives = 30/55 (54%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+ KK + +K + K +KK+ +K++ +E ++ ++++ ++ R R+ K
Sbjct: 331 EIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKA 385
Score = 30.6 bits (69), Expect = 0.30
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
EL E KK + +K + K +KK+ +K+ + + ++ +++ R R +
Sbjct: 324 ELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARAR 379
Score = 30.6 bits (69), Expect = 0.30
Identities = 11/56 (19%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
E+ K +K + K +KK+ +K++ +++ N +E ++++ + +++R K
Sbjct: 331 EIKKTRTAEKNEAKARKKEIAQKRRAAEREIN--REARQERAAAMARARARRAAVK 384
Score = 29.0 bits (65), Expect = 0.79
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 18/65 (27%)
Query: 10 KEKKKKKKKKKKKKKKKK------------------KKKKKKKNLIKEKKKKKKKKKTKK 51
+EK+K+KK ++ + + KK + E K +KK+ K+
Sbjct: 295 REKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIAQKR 354
Query: 52 KSKRR 56
++ R
Sbjct: 355 RAAER 359
Score = 27.5 bits (61), Expect = 3.0
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNL-----IKEKKKKKKKKKTKKKSKRRRRKNYTK 63
E K +KK+ +K++ +++ ++ + + ++ K KKK N
Sbjct: 340 KNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDT 399
Score = 27.1 bits (60), Expect = 4.3
Identities = 6/54 (11%), Positives = 26/54 (48%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
K +KK+ +K++ +++ ++ + + + ++ K+K++ + +
Sbjct: 343 AKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPN 396
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 30.7 bits (69), Expect = 0.27
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
++ K KK KK KK ++ +K++KKK + K R+K+
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKS 651
Score = 28.7 bits (64), Expect = 1.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 20 KKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
++ K KK KK KK + + KK+KKK S ++ K+
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKS 651
Score = 28.4 bits (63), Expect = 1.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
++ K KK KK KK ++ L K KKK K R+
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRK 649
Score = 28.4 bits (63), Expect = 2.0
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 12 KKKKKKKKKKKKKKKK------KKKKKKKNLIKEKKKKKKKKK 48
++ K KK KK KK ++ KK+KKK KK +K
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRK 649
Score = 27.6 bits (61), Expect = 2.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 12 KKKKKKKKKKKKKKK------KKKKKKKKNLIKEKKKKKKKKKTKK 51
+ K KK KK KK ++ KK+KKK KK +KK++
Sbjct: 608 RGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQA 653
Score = 27.6 bits (61), Expect = 3.4
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 10 KEKKKKKKKKKKKKK------KKKKKKKKKKNLIKEKKKKKKK 46
+ K KK KK KK ++ KK+KKK + KK +KK
Sbjct: 608 RGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKK 650
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 30.6 bits (69), Expect = 0.28
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
+KKKKKKK K+KKKKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 30.6 bits (69), Expect = 0.29
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNL 36
+KKKKKKK K+KKKKK ++ K +
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQI 707
Score = 30.2 bits (68), Expect = 0.45
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLI 37
+KKKKKKK K+KKKKK ++ I
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQI 707
Score = 29.5 bits (66), Expect = 0.77
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKE 39
+KKKKKKK K+KKKKK + K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.7 bits (64), Expect = 1.4
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKK 32
++KKKKKK K+KKKKK ++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 27.5 bits (61), Expect = 2.9
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 25 KKKKKKKKKKN-----------LIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICHG 69
KKKK K N K+KKKKK K+K KKK++ ++ + NI G
Sbjct: 661 KKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEG 716
Score = 26.4 bits (58), Expect = 6.9
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
K+KKKK K+KKKKK ++ K+ I+E + +K+ + + + K + ++ +
Sbjct: 686 KKKKKKSKEKKKKKNREASKQIHALENIEEGIEGSNNEKSSETPQLKLEKKFGQSPV 742
Score = 26.4 bits (58), Expect = 7.4
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 21 KKKKKKKKKKKKKKNLIKEKKKK 43
+KKKKKKK K+KKK +E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 30.8 bits (70), Expect = 0.29
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
E ++ K KK K K KK KK KK+
Sbjct: 814 EPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKT 856
Score = 29.6 bits (67), Expect = 0.56
Identities = 12/44 (27%), Positives = 15/44 (34%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
++ K KK K K KK KK KK + R
Sbjct: 816 REPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAAR 859
Score = 28.9 bits (65), Expect = 1.2
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
++ K KK K K KK KKT K
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKT 856
Score = 28.5 bits (64), Expect = 1.4
Identities = 12/51 (23%), Positives = 16/51 (31%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
FE + KK K K +K KK KK +K+
Sbjct: 811 FEFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 28.1 bits (63), Expect = 1.9
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 8 LIKEKKKK-----KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
L+K+ K + ++ K KK K + +K KK KK+ ++
Sbjct: 801 LVKQPDGKIGFEFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKK 855
Score = 28.1 bits (63), Expect = 1.9
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+ K KK K K +K K KK KKT +
Sbjct: 817 EPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKTG 862
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 29.7 bits (67), Expect = 0.29
Identities = 15/49 (30%), Positives = 32/49 (65%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
LS+ +++ ++K+K+++K + KKK+KK +++ KK KK ++ S
Sbjct: 57 LSQQLQQPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 30.8 bits (70), Expect = 0.29
Identities = 17/38 (44%), Positives = 29/38 (76%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKE 39
F++S ++EK KKKKKK+KKK+++ K+++K + I E
Sbjct: 734 EFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 28.5 bits (64), Expect = 1.6
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
F++S L+K+ + K + K ++K K K+KK+KKK+++ K++ K R
Sbjct: 714 SFDISGLMKKIFRNWNGKDAEFKISDSVEEKTKK--KKKKEKKKEEEYKREEKAR 766
Score = 26.6 bits (59), Expect = 6.7
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKK----------KKKKKKNLIKEKKKKKKKKKTKK 51
E+ +E+K+ + + + K+KK +K +++ + KK+K KK K
Sbjct: 1517 SIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYK 1576
Query: 52 KSKRR 56
+
Sbjct: 1577 SNTEA 1581
Score = 26.6 bits (59), Expect = 6.9
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT---KKKSKRRRRKNYTKTNIC 67
E + +++K+ + + + K+KK NL ++K + + K+R+ K K+N
Sbjct: 1521 ENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTE 1580
Query: 68 HGEQTLLTSVSFEQLCIN 85
L QL N
Sbjct: 1581 AELDFFLKRYLRFQLRWN 1598
>gnl|CDD|237091 PRK12405, PRK12405, electron transport complex RsxE subunit;
Provisional.
Length = 231
Score = 30.2 bits (69), Expect = 0.30
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 34 KNLIKEKKKKKKKKKTKKKSKRRRR 58
KNLI ++KKK+K K + +
Sbjct: 203 KNLIDKRKKKRKAKAAAEPALPAGE 227
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1
(CLPTM1). This family consists of several eukaryotic
cleft lip and palate transmembrane protein 1 sequences.
Cleft lip with or without cleft palate is a common birth
defect that is genetically complex. The nonsyndromic
forms have been studied genetically using linkage and
candidate-gene association studies with only partial
success in defining the loci responsible for orofacial
clefting. CLPTM1 encodes a transmembrane protein and has
strong homology to two Caenorhabditis elegans genes,
suggesting that CLPTM1 may belong to a new gene family.
This family also contains the human cisplatin resistance
related protein CRR9p which is associated with
CDDP-induced apoptosis.
Length = 437
Score = 30.3 bits (69), Expect = 0.31
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 26 KKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
KKK KKKNL+ K +K++ ++ +K + ++ N+
Sbjct: 148 LPKKKVKKKNLLGGKSEKEEPEE-EKTPAPDKIVSHWHPNL 187
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 30.1 bits (68), Expect = 0.33
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+KK+ +K KK KKK K+K +EKK + KT++
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENEN 95
Score = 27.8 bits (62), Expect = 1.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK 45
+ KKK+ +K KK KKK K+ L +E+KK +
Sbjct: 50 QPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPES 85
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 30.0 bits (68), Expect = 0.34
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
KKK +++KKKKKKK KKK L K K
Sbjct: 165 EAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 29.6 bits (67), Expect = 0.44
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
IKE + + KKK +++KKKKKKK+ K+K KK K
Sbjct: 163 IKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 29.6 bits (67), Expect = 0.44
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 3 FELSKLIKEKKKKKKKKKKK---------KKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
+ KL+ KK ++ KKK + KKK ++ K+KKK KKKK KK +
Sbjct: 140 YSDEKLLAWLLKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVA 199
Query: 54 KRRRRK 59
+
Sbjct: 200 AVGMKA 205
Score = 28.8 bits (65), Expect = 0.82
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNL 36
+ + +EKKKKKKK KKKK KK K +
Sbjct: 173 KKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKAI 206
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 30.3 bits (68), Expect = 0.35
Identities = 19/51 (37%), Positives = 21/51 (41%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K +EKK KK K+ K KK K K KK K KKTK
Sbjct: 8 TKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKT 58
Score = 28.8 bits (64), Expect = 1.1
Identities = 18/63 (28%), Positives = 25/63 (39%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
E K K+K ++KK KK K+ K K K K KK K K + + K
Sbjct: 3 ETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKK 62
Query: 64 TNI 66
+
Sbjct: 63 VTV 65
Score = 26.8 bits (59), Expect = 4.8
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ +K+ K K K KK K +K + KK+++ K+ KK+ ++ + KN +K
Sbjct: 46 KAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSK 105
Query: 64 TN 65
Sbjct: 106 LP 107
Score = 26.1 bits (57), Expect = 8.3
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
K KK K KK K K KK +K +K + KK++ K ++ +
Sbjct: 40 STKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVF 93
Score = 26.1 bits (57), Expect = 9.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
K KK K KK K K KK + EK + KK+ KK+ ++
Sbjct: 40 STKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKK 85
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 30.6 bits (70), Expect = 0.35
Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 3 FELSKLIKEKKKKKKKKKK-KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
F + K+ E K++ +K + +K+++ +K K ++ KK + +KK + K+ +
Sbjct: 156 FGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGP 214
Score = 30.2 bits (69), Expect = 0.39
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
FE K +++K K+ + KK + +KKK+ KN ++ + KK K+
Sbjct: 175 FEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKE 224
Score = 29.4 bits (67), Expect = 0.73
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
F + EK K+ + KK + +KKK+ K KE + KK K++
Sbjct: 175 FEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
Score = 29.4 bits (67), Expect = 0.84
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
E KL KE + KK + +KKK+ K K+ ++ KK K++ T K
Sbjct: 182 EDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPMKE 231
Score = 26.7 bits (60), Expect = 5.4
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
++ +E +K K+ + KK + +KKK+ K+ + K K +
Sbjct: 177 AQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
Score = 26.7 bits (60), Expect = 5.9
Identities = 12/61 (19%), Positives = 31/61 (50%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYT 62
++ I + K++ +K + +K+++ +K K+ +K + +KKK++K +
Sbjct: 159 LKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIG 218
Query: 63 K 63
K
Sbjct: 219 K 219
Score = 26.3 bits (59), Expect = 7.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLI 37
F+L + K K+ K K K+ K K K+K+L+
Sbjct: 1300 DFDLETMSKGKEAIKAKMKEIKSKGNDASNKEKDLL 1335
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 30.3 bits (69), Expect = 0.36
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 11 EKKKKKKKKKKK------KKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
EKKKK+ + K + K + LI KK K++KK
Sbjct: 707 EKKKKRIELKIFSGDIHFPGETDKISRHSGILIPPGTGKKNSKESKK 753
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 30.4 bits (69), Expect = 0.38
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K KEK+ K + + K K +K K ++ +K
Sbjct: 767 KQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVS 819
Score = 30.0 bits (68), Expect = 0.44
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
EK+KK+K+ K + + K K +K+ + T
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPD 809
Score = 29.2 bits (66), Expect = 0.94
Identities = 10/58 (17%), Positives = 18/58 (31%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K +K+KK+K+ K + + K EK K + +
Sbjct: 753 ELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDA 810
Score = 28.8 bits (65), Expect = 1.3
Identities = 7/49 (14%), Positives = 13/49 (26%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
S+L K K +K K + + K + +
Sbjct: 774 SKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVDGVSADR 822
Score = 26.1 bits (58), Expect = 8.3
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+K+KK+K+ K + + + K +K K + +
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAV 811
Score = 26.1 bits (58), Expect = 9.2
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+K+KK+K+ K + + K K +K K +
Sbjct: 765 TEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAA 813
>gnl|CDD|205286 pfam13105, DUF3959, Protein of unknown function (DUF3959). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 260 amino acids in length.
Length = 242
Score = 29.8 bits (67), Expect = 0.39
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 21/60 (35%)
Query: 23 KKKKKKKKKKKKNLIKEKKKKKK---------------------KKKTKKKSKRRRRKNY 61
+K+K K+ NL K+KKK+KK +K + K R+ NY
Sbjct: 151 HRKEKDDNKENINLFKQKKKRKKLSFKIRLPRLPKLKMKLFKFGRKPSNSKDPRKYEHNY 210
>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional.
Length = 307
Score = 30.1 bits (68), Expect = 0.40
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 5 LSKLIKEK-KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
L K I E+ K K K +K + I KKKKK + K ++R
Sbjct: 255 LRKQIAEEFAKNPPKAYKSPSGRKDVTPSQNQAIASLPKKKKKNRNAGKQRKR 307
>gnl|CDD|181988 PRK09609, PRK09609, hypothetical protein; Provisional.
Length = 312
Score = 30.0 bits (68), Expect = 0.40
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKK---KKNLIKEKKKKKKKKKTKKKSKRRR 57
FF+ K K+ + K+ K K+K++ N K +K K+K +KK K+
Sbjct: 99 FFFKFGKKFFGKESRIKRYDNKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKKLE 158
Query: 58 RKNYTK 63
+ N K
Sbjct: 159 KTNEEK 164
Score = 28.9 bits (65), Expect = 1.0
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+K+ K+K++ + +K +K K+K L+++KKKK +K +K
Sbjct: 119 NKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKKLEKTNEEKS 165
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.2 bits (68), Expect = 0.40
Identities = 15/54 (27%), Positives = 19/54 (35%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
K E KKK + KKK + K K + K +K K K K
Sbjct: 202 KAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKA 255
Score = 27.8 bits (62), Expect = 2.0
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+KK + + KKK + KKK + K + K +K +
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAA 243
Score = 26.3 bits (58), Expect = 6.9
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
+K + KKK + + KK + KKK + K + KKK + ++K++
Sbjct: 158 AAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKK 210
>gnl|CDD|234032 TIGR02855, spore_yabG, sporulation peptidase YabG. Members of this
family are the protein YabG, demonstrated for Bacillus
subtilis to be an endopeptidase able to release
N-terminal peptides from a number of sporulation
proteins, including CotT, CotF, and SpoIVA. It appears
to be expressed under control of sigma-K [Cellular
processes, Sporulation and germination].
Length = 283
Score = 30.0 bits (68), Expect = 0.41
Identities = 11/51 (21%), Positives = 27/51 (52%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNY 61
E + ++KK+KK+ K++ + + ++ K K+KK+ + + + Y
Sbjct: 50 ELVDESERKKRKKRFKERMETSYRLFRQDYKLMKEKKEYRATGGYKNNQLY 100
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known
as Stage III sporulation protein F, and related
proteins. The integral membrane protein SpoVB has been
implicated in the biosynthesis of the peptidoglycan
component of the spore cortex in Bacillus subtilis. This
model represents a subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins. Proteins from
the MATE family are involved in exporting metabolites
across the cell membrane and are often responsible for
multidrug resistance (MDR).
Length = 434
Score = 30.1 bits (69), Expect = 0.42
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKE 39
+KK+++ K+ +K + K K ++KE
Sbjct: 199 RKKRRELKRLLRKSPRSKISTKEILKE 225
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 30.2 bits (68), Expect = 0.42
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
K K K + K K KK ++ KE +K + KT K+ +R K+NI
Sbjct: 161 KRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNI 217
Score = 29.0 bits (65), Expect = 1.0
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+ K + K K K+ KK + K+K K+KK+KK +S
Sbjct: 191 TTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTV 240
Score = 27.1 bits (60), Expect = 4.5
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ SK +K + K K K+ KK + KKK K+KK KK++
Sbjct: 186 DTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEAS 236
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many
hypothetical proteins.
Length = 98
Score = 29.0 bits (65), Expect = 0.43
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
KK+KKKKK+ K + K K K+ KKK + + ++SKRRR
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 28.2 bits (63), Expect = 0.65
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
+F + K K+KK+ K + K KK +KK KKK+ E ++ K+++T+
Sbjct: 17 IFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRTE 66
Score = 27.4 bits (61), Expect = 1.4
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
++ + KK+KKKKK+ K + K KK +KK + + + K +R
Sbjct: 12 RDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 30.2 bits (69), Expect = 0.46
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKE 39
+ + E +K+ K +KK+KKKKK+K+K+ +K
Sbjct: 606 AHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
Score = 29.8 bits (68), Expect = 0.47
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
+ +L + +K K + + +K+ K N KEKKKKK+K+K ++
Sbjct: 590 IKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEE 636
Score = 27.5 bits (62), Expect = 3.7
Identities = 11/48 (22%), Positives = 31/48 (64%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
EL + +++K ++ + K+ +K K++ ++KK ++E++ K ++ K+
Sbjct: 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
Score = 27.1 bits (61), Expect = 4.1
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E ++IKE ++ +K K + + +K+ + + +KK+KKK K+K K
Sbjct: 585 EADEIIKELRQLQKGGYASVKAHELIEARKR--LNKANEKKEKKKKKQKEK 633
Score = 25.9 bits (58), Expect = 9.8
Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 4 ELSKLIK---EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
+L++LI E +++ ++K ++ + K+ +K K ++EKK+K ++++ K + +
Sbjct: 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 29.8 bits (67), Expect = 0.48
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 19 KKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
K +K+ KKK K+ +NL + K++K++K+K KK
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQ 158
Score = 29.0 bits (65), Expect = 1.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
+ EL L ++ K +K+ KKK K+ + + K +K+KK KK+
Sbjct: 111 LILELLALELDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLP 161
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 30.0 bits (67), Expect = 0.49
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
E S+L+ + K+ KK ++ ++K + E++K +KK + ++K K+
Sbjct: 94 EGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKK 145
Score = 28.9 bits (64), Expect = 1.2
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 20 KKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K+ KK ++ ++K + +++K +KK +K+ K ++
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMD 147
Score = 28.1 bits (62), Expect = 1.8
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
K+ KK ++ ++K + EKK +K++K K
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMD 147
Score = 27.3 bits (60), Expect = 3.2
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKEK---KKKKKKKKTKKKSKRRRRKNYTKTNICHGEQTL 73
K+ KK ++ ++K + ++E+ KK +K++K KK + + E
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEF 167
Query: 74 LTSVSFE 80
+TS+ E
Sbjct: 168 VTSLENE 174
Score = 27.3 bits (60), Expect = 3.6
Identities = 8/43 (18%), Positives = 22/43 (51%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
+K+ KK ++ ++K ++ ++K +K++K K +
Sbjct: 107 DKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDED 149
Score = 27.3 bits (60), Expect = 4.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K+ KK ++ ++K ++ +EK +KK +K+ K K
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKM 146
Score = 26.9 bits (59), Expect = 5.3
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K+ + K+ KK + + ++ + + + K++KK +R RRK
Sbjct: 71 KKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRK 120
Score = 26.2 bits (57), Expect = 9.0
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 27/83 (32%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNL------------IKEKKKKKKKKKTKK 51
E KKK + K+ KK + + L +K+ KK ++T++
Sbjct: 60 EEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRR 119
Query: 52 KS---------------KRRRRK 59
K+ R+RRK
Sbjct: 120 KAAAASSDVEEEKTEKKVRKRRK 142
>gnl|CDD|221550 pfam12366, Casc1, Cancer susceptibility candidate 1. This domain
family is found in eukaryotes, and is typically between
216 and 263 amino acids in length. Casc1 has many SNPs
associated with cancer susceptibility.
Length = 227
Score = 29.7 bits (67), Expect = 0.52
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKK 42
+ I E+ + + K+ K K K I + K
Sbjct: 64 YELYISKIAEEAEGARGYVTDIPKEYKAKPVKYLEIPKPIK 104
Score = 25.8 bits (57), Expect = 9.2
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIK 38
+SK+ +E + + K+ K K K + K
Sbjct: 64 YELYISKIAEEAEGARGYVTDIPKEYKAKPVKYLEIPK 101
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 29.2 bits (66), Expect = 0.52
Identities = 11/48 (22%), Positives = 37/48 (77%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
++I ++K+++K+++K++K++K++K+K+ +K++++K+ ++ K
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEK 57
Score = 26.1 bits (58), Expect = 5.8
Identities = 13/50 (26%), Positives = 31/50 (62%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
+EK+++K++K++K++K+K+ K + +K+ ++ +K K K R
Sbjct: 18 REEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYA 67
Score = 25.7 bits (57), Expect = 8.8
Identities = 10/44 (22%), Positives = 34/44 (77%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
++K+++K+++K++K++K++K+K K +K++++K ++ ++
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEK 57
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 28.7 bits (65), Expect = 0.54
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 22 KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
K++KKKKKKK + EKK+KK+ + +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKA 68
Score = 26.8 bits (60), Expect = 2.7
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
K++KKKKKKK + + +KK+KK + +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 26.0 bits (58), Expect = 4.4
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
K++KKKKKKK + + +KK+K + E++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 29.2 bits (66), Expect = 0.55
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLI 37
I E KK K K+ +K + KKKKKK N I
Sbjct: 82 IYEVSKKAKGKRSRKNQTKKKKKKDDNPI 110
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 29.7 bits (67), Expect = 0.56
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
KK +K ++K K + K ++ +KK KK + K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQK----VKNRRARKKAKKARLAKVAKALYK 377
Score = 28.1 bits (63), Expect = 1.6
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
K +K ++K K +K K ++K KK + K K
Sbjct: 334 KLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAK 373
Score = 28.1 bits (63), Expect = 1.7
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 23 KKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
KK +K ++ + +K K ++ +KK+K+ R K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKAL 375
Score = 28.1 bits (63), Expect = 1.7
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K+ +K ++K K +K K + K+ KK + K K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYK 377
Score = 28.1 bits (63), Expect = 1.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKK 41
+ ++K K +K K ++ +KK KK L K K
Sbjct: 341 LAQEKATAKGAQKVKNRRARKKAKKARLAKVAK 373
Score = 28.1 bits (63), Expect = 1.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKK 42
K +K K ++ +KK KK + K K L K K
Sbjct: 349 KGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 27.7 bits (62), Expect = 2.3
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K +++ ++K K +K K ++ + K+ + K K K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIK 380
Score = 27.7 bits (62), Expect = 2.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
L KL ++K K +K K ++ +KK K K K K K
Sbjct: 335 LRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 27.3 bits (61), Expect = 3.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKK 34
+L+ L +EK K +K K ++ +KK KK +
Sbjct: 337 KLAVLAQEKATAKGAQKVKNRRARKKAKKAR 367
Score = 27.3 bits (61), Expect = 3.8
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
KK +K ++K K K K ++ +KK K + + + Y
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSI 379
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 29.6 bits (67), Expect = 0.58
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIK 38
F L ++ KKK+KK+KKK + + ++ K + L
Sbjct: 94 FLFLGYILGRKKKRKKEKKKNQLEYERLLKNLRKLSL 130
Score = 26.1 bits (58), Expect = 8.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKK 42
+KKK+KK+KKK + + + L+K +K
Sbjct: 103 RKKKRKKEKKKNQLEYERLLKNLRK 127
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 29.3 bits (66), Expect = 0.58
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKK 43
K + K K K K K K KK +++ K +K + +
Sbjct: 94 KPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 28.1 bits (63), Expect = 1.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
I E K+ K + K K K K K +K +++ K++ K R
Sbjct: 81 IPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 27.7 bits (62), Expect = 2.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKK 33
+ K K K K K K KK +++ K+
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKR 119
Score = 27.7 bits (62), Expect = 2.0
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
K+ K + K K K K K K KK +++ K+ K + R
Sbjct: 85 PKEAPVVIPKPEPKPKPKPKPKPK---PVKKVEEQPKREVKPVEPR 127
>gnl|CDD|219359 pfam07274, DUF1440, Protein of unknown function (DUF1440). This
family contains a number of bacterial proteins of
unknown function approximately 180 residues long. These
are possibly integral membrane proteins.
Length = 136
Score = 28.8 bits (65), Expect = 0.59
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 71 QTLLTSVSFEQLCINYANEHLQYYFNQHVFQY 102
QTLL +QL I H Y ++ H +
Sbjct: 28 QTLL-----DQLGIPDPITHATYTYSGHAVPW 54
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 29.4 bits (66), Expect = 0.65
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKE-----KKKKKKKKKTKKKSKRRR 57
+ ++ K++ +KK+K KKK +K+K N + K + K+KK K + +RRR
Sbjct: 346 DDEESKEEVEKKQKVKKKPRKRKVNPVSNNFRRLKLRNKRKKGFKGRFRRRR 397
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 29.4 bits (67), Expect = 0.67
Identities = 10/55 (18%), Positives = 28/55 (50%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+ +L KE K+ +K K+ + K + ++E++ +K++ K + + + +
Sbjct: 6 VYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEA 60
>gnl|CDD|216205 pfam00937, Corona_nucleoca, Coronavirus nucleocapsid protein.
Length = 346
Score = 29.3 bits (66), Expect = 0.73
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
L+KL K+K KK + KK + KK L K + K+T K +
Sbjct: 198 ALAKLGFGKQKSSSKKPSRVTKKSAAEAAKKQL-----NKPRWKRTPNKGEN 244
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 29.3 bits (66), Expect = 0.73
Identities = 18/45 (40%), Positives = 19/45 (42%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K K KK+ KKK K K K K K KK KKK K
Sbjct: 498 KTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEK 542
Score = 28.9 bits (65), Expect = 1.1
Identities = 16/47 (34%), Positives = 18/47 (38%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
L K KK+ KKK K K K K KKK KK+
Sbjct: 497 LKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKS 543
Score = 28.9 bits (65), Expect = 1.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ KK+ KKK K K K + KKKKKK+K+
Sbjct: 504 GKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDD 548
Score = 28.5 bits (64), Expect = 1.5
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K K KK+ KKK K K + K K KKKKK +K
Sbjct: 497 LKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSID 545
Score = 28.1 bits (63), Expect = 1.9
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
KK+KKK+K+K++ K +K++K+K KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 27.7 bits (62), Expect = 2.6
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
KK+KKK+K+K++ K + + KEK+K KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 27.7 bits (62), Expect = 2.9
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
KK+ KKK K K K K +K KKKKKK+K
Sbjct: 507 AKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDD 549
Score = 27.3 bits (61), Expect = 3.3
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNL-IKEKKKKK 44
K +++K++ K + KK+K+K KK KN+ I EK+ KK
Sbjct: 629 RKKKRKRKRRFLTKIEGVKKEKRKDKKLKNVIINEKRNKK 668
Score = 27.3 bits (61), Expect = 3.9
Identities = 15/44 (34%), Positives = 17/44 (38%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
K K KK+ KKK K K K K KKK K+
Sbjct: 497 LKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKK 540
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 29.4 bits (66), Expect = 0.73
Identities = 10/53 (18%), Positives = 30/53 (56%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K ++++ +K K+ ++ K+ ++K+K + K K+ + K K +++ ++
Sbjct: 92 KELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKA 144
Score = 29.0 bits (65), Expect = 0.79
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K +E KK+ +++ K K + KKK + K + + K K + K K+K K
Sbjct: 143 KAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAK 195
Score = 28.6 bits (64), Expect = 1.1
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
K+ + K K + + +KK K++ KK+ + K K + K K +++ + K
Sbjct: 127 KQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAK 180
Score = 28.6 bits (64), Expect = 1.1
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIK---EKKKKKKKKKTKKKSKRRRRK 59
E K +E K K+ + K K + + +KK K+ K E+ K K + KKK+ ++K
Sbjct: 116 EKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKK 174
Score = 27.5 bits (61), Expect = 2.8
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
E+ K K+ + K K + + +KK K K++ +++ K K ++K++ + K
Sbjct: 122 EEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKK 174
Score = 27.1 bits (60), Expect = 3.8
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K +EK+K+ ++ K K+ + K K + + K K++ KK+ + + K+K
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAK 159
Score = 26.7 bits (59), Expect = 4.8
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+K+ +++ K K + KKK + K + + K K + K K K++ + K
Sbjct: 149 KKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKA 198
Score = 26.7 bits (59), Expect = 4.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
E K + KKK + KKK + + K K E K K K ++ K K++ + K
Sbjct: 153 EEEAKAKAAAEAKKKAAEAKKKAEAEAKAK----AEAKAKAKAEEAKAKAEAAKAK 204
Score = 26.7 bits (59), Expect = 4.9
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
K + + K K + K K K ++ K K K K + K + ++
Sbjct: 174 KAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAE 224
Score = 26.3 bits (58), Expect = 6.9
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+ +KK K++ KK+ +++ K K + K + KKK + K + K
Sbjct: 139 EAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAK 188
Score = 26.0 bits (57), Expect = 8.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K E +KK K++ KK+ +++ K K K+ + KKK + + K+K
Sbjct: 135 KAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAK 182
Score = 26.0 bits (57), Expect = 9.4
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K+ + KKK + + K K + K K K + K + K K ++ +
Sbjct: 166 KKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEA 215
>gnl|CDD|236413 PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.
Length = 367
Score = 29.2 bits (66), Expect = 0.77
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 19 KKKKKKKKKKKKKKKKNLIKEKKKKK 44
KK KKK+ ++ K LI++ KK+
Sbjct: 1 KKTKKKETTTLEQVVKELIEKGKKRG 26
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 29.1 bits (66), Expect = 0.79
Identities = 11/54 (20%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
S +++K ++ +++ +K++K+ K++ I+ + K KK+K R ++
Sbjct: 236 SSYLEQKAERLRQEAAAYEKQQKELAKEQEWIR---RGKAAASKAKKAKSRIKR 286
Score = 26.1 bits (58), Expect = 8.3
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
+E +K++K+ K+++ ++ K K KK K + K+ +K R
Sbjct: 248 QEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLA 295
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 29.3 bits (66), Expect = 0.80
Identities = 10/57 (17%), Positives = 23/57 (40%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
L + K K + +KK++ N I+ + + K++ +K+ + K
Sbjct: 47 LEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQ 103
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 29.4 bits (66), Expect = 0.80
Identities = 16/53 (30%), Positives = 35/53 (66%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
E++++K++KK++++K K+++ ++++KKKK KK K+ + N TK
Sbjct: 39 EEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 28.2 bits (63), Expect = 1.8
Identities = 14/45 (31%), Positives = 34/45 (75%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
E+++++K++KK++++K K+++ + +EK++KKKK K K++
Sbjct: 38 EEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 26.7 bits (59), Expect = 6.3
Identities = 15/51 (29%), Positives = 37/51 (72%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E+ K + +++++++K++KK++++K K+++ +E+K++KKKK K K
Sbjct: 30 EVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 29.1 bits (66), Expect = 0.85
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
EL +L K + ++K+KKK+KKK KKKK + K K K+ ++
Sbjct: 384 ELKQL-KAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQD 432
Score = 28.3 bits (64), Expect = 1.7
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+L + +K+ K + ++K+KKK+KKK K K K + K K K++ R
Sbjct: 380 QLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKK-KYKVPRGKIYKVLKEATR 430
Score = 26.4 bits (59), Expect = 6.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+ E+K+KKK+KKK KKKK K + K + ++ ++ + K
Sbjct: 393 VGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLELLKNV 439
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 28.7 bits (65), Expect = 0.90
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
++EK+K + + ++ + ++ K K+KKKKKKK++ ++
Sbjct: 61 FVQEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 26.0 bits (58), Expect = 8.3
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKK 32
E + +E K+KKKKKKKKKKK++ ++
Sbjct: 77 ERADRAEELLKEKKKKKKKKKKKEELREW 105
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 28.7 bits (65), Expect = 0.95
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 7 KLIKEKKKKKKKKKKK------KKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K++K++ K +K + + +K+KKK + KE+KK K++K K +
Sbjct: 70 KILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 28.8 bits (65), Expect = 0.95
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
I E++K K+ KK KK KKKKKK+KK + KK K K K K +
Sbjct: 144 ISEREKAKQIKKLYKKAKKKKKKRKKTYVVAKKGNKGKAGRPKGVKGK 191
>gnl|CDD|221303 pfam11902, DUF3422, Protein of unknown function (DUF3422). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria, archaea and
eukaryotes. Proteins in this family are typically
between 426 to 444 amino acids in length.
Length = 419
Score = 29.1 bits (66), Expect = 0.95
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 111 GIRW-RHIEFSDNTLCLQLVEGKP 133
+RW RH EFS T +P
Sbjct: 74 RLRWERHTEFSTYTFFRPGPGDEP 97
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 28.5 bits (64), Expect = 1.0
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K KK+ K++KKK+KKKKKKK KK N +EK+ K +++ + +
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEE 126
Score = 28.1 bits (63), Expect = 1.2
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
E+K KK+ K++KKK+KKKKKKK +K++K+ K +
Sbjct: 80 EEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 28.1 bits (63), Expect = 1.3
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
KK+ K++KKK+KKKKKKK KK +++ K ++ + ++ +
Sbjct: 84 AKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEE 127
Score = 28.1 bits (63), Expect = 1.3
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
+++++KK+K ++K KK+ K++KKK K+KKK KK K ++K
Sbjct: 70 QKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKE 113
Score = 27.7 bits (62), Expect = 1.5
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
E + +EK KK+ K++KKK+KKKKKKK K K+++K+ K
Sbjct: 74 EKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 27.3 bits (61), Expect = 2.5
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+E+KK+K ++K KK+ K++KKK+K K+K KK KK+ K+ SK
Sbjct: 72 REEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKS 117
Score = 26.5 bits (59), Expect = 4.1
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
++K+++KK+K ++K KK+ K++KK K+KKKK KK K++
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEK 112
Score = 26.5 bits (59), Expect = 4.1
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
K ++KK+K ++K KK+ K++KKK+ K+KK KK KK +K+ +
Sbjct: 71 KREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKS 117
Score = 26.5 bits (59), Expect = 4.2
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
KE + ++ ++K+++KK+K ++K K K +KKK+KKKK KK K
Sbjct: 61 KETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKK 105
Score = 26.5 bits (59), Expect = 4.2
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
K+++K KK+ K++KKK+KKKKKKK KK++K+ K+ ++S
Sbjct: 78 KDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSD 123
Score = 26.5 bits (59), Expect = 4.6
Identities = 20/44 (45%), Positives = 33/44 (75%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
++K+++KK+K ++K KK+ K++K K+KKKKK KK KK+ K
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEK 112
Score = 25.4 bits (56), Expect = 9.4
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K++ K++KKK+KKKKKKK KK KK + K ++ +++ +
Sbjct: 85 KKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGE 129
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 28.9 bits (65), Expect = 1.0
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
KL+ E KK ++ +K+++ KK K+ + K +++ K+KK +K K+ ++K
Sbjct: 122 KKLLAEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKK 175
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 29.1 bits (65), Expect = 1.1
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNIC 67
KK+ K +K K K+K KN + K + KK++ ++KS + + +
Sbjct: 730 SAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHS 786
Score = 28.3 bits (63), Expect = 1.5
Identities = 17/68 (25%), Positives = 27/68 (39%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
SK EK K K+K K ++ K + KK ++EK + K K++
Sbjct: 737 SKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKSSSCSPSSSSSHHHSSSNKESRKSS 796
Query: 66 ICHGEQTL 73
E+ L
Sbjct: 797 RNKEEEML 804
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 28.8 bits (65), Expect = 1.1
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 22 KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
K KK+ K K+ K K++ K +K R RK+
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKS 48
Score = 27.6 bits (62), Expect = 3.0
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
K KK+ K K+ +++K K++ K R R+
Sbjct: 10 KNALKKRLKAKQAEEEK---AAKEEAKAAAAAAAAKGRSRK 47
Score = 27.3 bits (61), Expect = 3.2
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
E K KK+ K K+ +++K K K K +KS
Sbjct: 6 EPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKS 48
Score = 26.5 bits (59), Expect = 6.2
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKK 44
LSK +K+ K K+ +++K K++ K + + +K
Sbjct: 8 LSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 27.3 bits (61), Expect = 1.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKN 35
KKKKKKKKKK + K KK
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKAT 47
Score = 26.2 bits (58), Expect = 3.6
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
K + KKKKKKKKKK K KK + S+
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEG 54
Score = 25.4 bits (56), Expect = 6.1
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
E KKKKKKKKKK + K + +
Sbjct: 18 TEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFM 58
Score = 25.4 bits (56), Expect = 6.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKN 35
L+K+KKKKKKKK + K KK
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATAE 49
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 28.9 bits (65), Expect = 1.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKK 30
FE + K+K++ KK+KKKK KK K
Sbjct: 346 AFERPLALSPKRKREGDKKQKKKKSKKLK 374
Score = 28.5 bits (64), Expect = 1.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKK 32
+ + K+K++ KK+KKKK KK K
Sbjct: 346 AFERPLALSPKRKREGDKKQKKKKSKKLK 374
Score = 28.5 bits (64), Expect = 1.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 16 KKKKKKKKKKKKKKKKKKKN 35
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLKL 375
Score = 27.7 bits (62), Expect = 2.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 15 KKKKKKKKKKKKKKKKKKK 33
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 26.2 bits (58), Expect = 7.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 17 KKKKKKKKKKKKKKKKKKNLI 37
K+K++ KK+KKKK KK L
Sbjct: 356 KRKREGDKKQKKKKSKKLKLT 376
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 28.9 bits (66), Expect = 1.1
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
LSK I + K+K + + + K+ K++ K L E + + +
Sbjct: 53 ALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAE 95
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This
is a family of proteins conserved in fungi. The
function is not known.
Length = 436
Score = 28.6 bits (64), Expect = 1.1
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
EL + K K KK K+ + + KK K ++K +KS
Sbjct: 40 ELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSA 90
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 28.5 bits (64), Expect = 1.3
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K K ++ ++ + KE++ + +KK KK K
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 28.1 bits (63), Expect = 1.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKK 30
F K+++ + +KK+ KKKK
Sbjct: 168 FAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 26.1 bits (58), Expect = 6.3
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
K ++ ++ + K+++ + EKK+ KKKK
Sbjct: 163 KLLEEFAAEEAEAAAAAKEEESAE----GEKKESKKKK 196
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 28.6 bits (64), Expect = 1.3
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
S+L K + + K ++K +++ ++ K+ K+ + K K
Sbjct: 893 SELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHK 941
>gnl|CDD|192488 pfam10228, DUF2228, Uncharacterized conserved protein (DUF2228).
This is a family of conserved proteins of approximately
700 residues found from worms to humans.
Length = 253
Score = 28.5 bits (64), Expect = 1.3
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS-KRRRRKNYTKT 64
KK K+ KKKK KK ++ L + K+ + K K K+R++K TKT
Sbjct: 94 KKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKKVVTKT 145
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 28.3 bits (63), Expect = 1.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 16 KKKKKKKKKKKKKKKKKKKNL 36
++ K+KKKKK KKKK K+L
Sbjct: 86 NQENKQKKKKKDKKKKSPKSL 106
Score = 27.9 bits (62), Expect = 1.7
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 18 KKKKKKKKKKKKKKKKKNLI---KEKKKKKKKKKTKKKSKR 55
++ ++KK + KK+ ++ +E K+KKKKK KKKS +
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 26.7 bits (59), Expect = 4.4
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 11 EKKKKKKKKKKKKKKKK 27
E K+KKKKK KKKK K
Sbjct: 88 ENKQKKKKKDKKKKSPK 104
Score = 26.7 bits (59), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKK 41
++ K+KKKKK KKKK K ++E K
Sbjct: 86 NQENKQKKKKKDKKKKSPKSLLLNFVTVEESK 117
Score = 26.3 bits (58), Expect = 6.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKK 43
E ++ K+KKKKK KKKK K N + ++ K
Sbjct: 78 ETEDWFSPNQENKQKKKKKDKKKKSPKSLLLNFVTVEESK 117
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 28.6 bits (64), Expect = 1.3
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+K K KKK+KKKK+ E K+KKK+K SK
Sbjct: 10 NQKDKNKKKEKKKKESPPPPHEIKRKKKRKGPDAASK 46
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 28.8 bits (65), Expect = 1.3
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
FE + + +++K ++ + KK + + K K+ + + K KK
Sbjct: 455 FEA-RQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKA 500
>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type
peptidyl-prolyl isomerase. This family is only found at
the amino terminus of pfam00254. This domain is of
unknown function.
Length = 124
Score = 27.6 bits (62), Expect = 1.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
+KK + K++ K +KK ++ K + + E KK+ K T+
Sbjct: 78 QKKLQAKQQAKAEKKAEENKAAGEAFLAENAKKEGVKTTE 117
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 28.5 bits (63), Expect = 1.4
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+K K K KK+K +++++KK K ++ K+KK KK K + ++ +
Sbjct: 522 DKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQA 571
Score = 28.1 bits (62), Expect = 1.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
K K KK+K +++++KK K ++ K+KK KK +K+ + K
Sbjct: 526 NKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLK 575
Score = 27.0 bits (59), Expect = 4.2
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNY 61
+ E S+ K+ K K KK+K +++++KK K + ++KK KK K K + +N
Sbjct: 515 YSETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENL 574
Query: 62 TK 63
K
Sbjct: 575 KK 576
>gnl|CDD|226814 COG4379, COG4379, Mu-like prophage tail protein gpP [General
function prediction only].
Length = 386
Score = 28.3 bits (63), Expect = 1.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKN 35
K + +K+K +K K KK KKN
Sbjct: 352 KKAEAARKRKGDRKGVSHKAKKGGKKN 378
Score = 28.3 bits (63), Expect = 1.9
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKN 35
E +K+K +K K KK KK
Sbjct: 354 AEAARKRKGDRKGVSHKAKKGGKKNQ 379
Score = 26.0 bits (57), Expect = 8.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKK 42
KK + +K+K +K K KK K + +
Sbjct: 350 YPKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 28.0 bits (63), Expect = 1.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 27 KKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+++K+KKK + KE+KK K++K K +
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 28.1 bits (63), Expect = 1.6
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 21 KKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
K +K KKK K+K+K L K +K + KK KK + RRR
Sbjct: 69 KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRR 106
Score = 27.4 bits (61), Expect = 3.5
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
K +K KKK K+K+K + L+ +K + KK KK K+ +R
Sbjct: 69 KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRR 106
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 28.0 bits (63), Expect = 1.7
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 5 LSKLIKEKKKKKKKKKKK-------------KKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
L L+ ++K +K +K++K K KK +K++ + E +K+ K
Sbjct: 33 LQWLLIDRKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMDMMKP 92
Score = 27.6 bits (62), Expect = 2.0
Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 24 KKKKKKKKKKKNLIKEKKK-KKKKKKTKKKSKRRRRKNYTKTN 65
+K +K +K++K + K ++ +K K K +R++ +
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQ 82
Score = 26.8 bits (60), Expect = 4.0
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
LS+L++ +K +K +K++K+ +K+ + L K K KK K++
Sbjct: 29 LSELLQ-WLLIDRKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQ 75
>gnl|CDD|218370 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 1, represents the clamp domain, which a
mobile domain involved in positioning the DNA,
maintenance of the transcription bubble and positioning
of the nascent RNA strand.
Length = 330
Score = 28.0 bits (63), Expect = 1.7
Identities = 12/55 (21%), Positives = 17/55 (30%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
S L+ + K K K K KK+ I KKK + +
Sbjct: 101 SSLLLNESVKYFFLKVVIDPKGKNSKKRLKKINNLCKKKSICSKCGEDNGGLKAF 155
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 28.2 bits (63), Expect = 1.8
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+K + K + ++ + K K++K +E +KK+K++ + K KR++ +
Sbjct: 381 YTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDE 431
Score = 27.5 bits (61), Expect = 3.3
Identities = 13/52 (25%), Positives = 32/52 (61%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
KL + K + ++ + K K++K K+++N K+K++ + K+ ++K +R+
Sbjct: 382 TKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Score = 27.1 bits (60), Expect = 4.3
Identities = 14/39 (35%), Positives = 30/39 (76%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
+E + K K++K K+++ +KK+K++ + KEK++K ++KK
Sbjct: 396 EEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 28.1 bits (64), Expect = 1.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKK 41
EL++ + EK K + + + KK K+KKK K
Sbjct: 367 ELAEKLAEKAIKAAQARLRAAKKVKRKKKTSGPALPGK 404
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 27.1 bits (61), Expect = 1.8
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
I+ +KKK+KK+ K + K+ KK ++++K + +K
Sbjct: 55 IRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 26.7 bits (60), Expect = 2.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
+KKK+KK+ K + K+ K L E++K + +K
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
>gnl|CDD|235516 PRK05582, PRK05582, DNA topoisomerase I; Validated.
Length = 650
Score = 28.2 bits (64), Expect = 1.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
K KK + K ++ K+ + KKK+ K KKK++K+
Sbjct: 207 SFYGYKGKKIELKNEEDVKEILAELKKKDFKVSKVKKKERKR 248
Score = 27.1 bits (61), Expect = 4.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
FE S + KK + K ++ K+ + KKK + + KKK++K+
Sbjct: 204 FEASFYGYKGKKIELKNEEDVKEILAELKKKDFKVSKVKKKERKRNP 250
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 28.2 bits (63), Expect = 1.9
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
S + K KK KKKKKKKKK++K + + + + + + S++
Sbjct: 261 TPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRK 313
Score = 28.2 bits (63), Expect = 2.1
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
+ K KK KKKKKKKKK++K E + + K +N +
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDS 325
Score = 27.4 bits (61), Expect = 3.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
+ E K KK KKKKKKKKK++K ++ ++ + + + +
Sbjct: 269 VSEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEE 317
Score = 27.4 bits (61), Expect = 3.6
Identities = 12/60 (20%), Positives = 25/60 (41%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ ++ +++ KKK K + + + K KK KKK K+++R+
Sbjct: 231 STDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRK 290
Score = 27.4 bits (61), Expect = 3.8
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKE----------KKKKKKKKKTKKKSKRRRR 58
++ +KK+++ KKK K + K KK KKK KKK KRR+
Sbjct: 232 TDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKD 291
Query: 59 KN 60
+
Sbjct: 292 LD 293
Score = 27.0 bits (60), Expect = 5.2
Identities = 14/27 (51%), Positives = 23/27 (85%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKK 28
++++S+++K KK KKKKKKKKK++K
Sbjct: 266 YYDVSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 26.3 bits (58), Expect = 7.9
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKK----------------KKKKNLIKEKKKKKKKKKTKKK 52
++EK K ++K+++ K K KK K K+K+ ++KK +
Sbjct: 58 LREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQKKKEAERKKALLLDE 117
Query: 53 SKRRRRKNYTKTN 65
++ R YT +
Sbjct: 118 KEKERAAEYTSED 130
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 28.0 bits (63), Expect = 1.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
K KK KKK KK + KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
Score = 26.1 bits (58), Expect = 9.5
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 19 KKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
K KK KKK K KK KKK K+
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
>gnl|CDD|177060 CHL00138, rps5, ribosomal protein S5; Validated.
Length = 143
Score = 27.6 bits (62), Expect = 1.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
KK KKK +K K+ K ++ +I+ K+ K K KK S R
Sbjct: 4 LLKKMYNKKKNRKSNIKENKWEERVIQIKRVSKVVKGGKKLSFR 47
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 28.1 bits (63), Expect = 2.1
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
K +K KK K+ K K+K +KKN + KK+ + K K+ + +++
Sbjct: 256 KFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRGKQKRSLRDKQK 304
Score = 26.2 bits (58), Expect = 7.9
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKK------KKKKTKKKSKRRRR 58
KE ++ ++K +K KK K+ K N KEK +KK KK+ + K KR R
Sbjct: 246 TAKEGREDREKFGSRKGKKDKEGKSTTN--KEKARKKNFMMTLHKKRVRGKQKRSLR 300
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 27.7 bits (62), Expect = 2.1
Identities = 8/49 (16%), Positives = 31/49 (63%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
E+ ++++++K+ ++++++ + K+ ++ + K+K K+ +K+ R
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRH 168
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 28.1 bits (63), Expect = 2.1
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
KL+ + K K K ++K K L K KK K+ +
Sbjct: 448 CEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFET 494
Score = 27.7 bits (62), Expect = 2.8
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
++ ++ K K K K ++K ++K +K KK K+ +
Sbjct: 443 PFKEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFE 493
Score = 26.6 bits (59), Expect = 6.0
Identities = 10/52 (19%), Positives = 13/52 (25%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+ +K K K K K K +K KK K
Sbjct: 440 IELPFKEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKE 491
>gnl|CDD|232945 TIGR00376, TIGR00376, DNA helicase, putative. The gene product may
represent a DNA helicase. Eukaryotic members of this
family have been characterized as binding certain
single-stranded G-rich DNA sequences (GGGGT and GGGCT).
A number of related proteins are characterized as
helicases [DNA metabolism, DNA replication,
recombination, and repair].
Length = 637
Score = 27.9 bits (62), Expect = 2.2
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
++ + I E +++ KK K +K++ K L K KK++ + K
Sbjct: 261 DIREKIDELIEERNKKLKPSPQKRRGLSDIKILRKALKKREARGIESLKIASM 313
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 27.7 bits (62), Expect = 2.3
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
K + K+K K ++ K+K++K+ + KE+K+ KKK
Sbjct: 269 INKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
Score = 27.0 bits (60), Expect = 4.4
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
E K + K+K K ++ K+K++K L +E K++K+ KK
Sbjct: 266 YEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKK 304
Score = 26.2 bits (58), Expect = 8.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
K + K+K K ++ K+K++K+ + K++K+ KKK
Sbjct: 268 PINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLA 307
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 27.7 bits (62), Expect = 2.4
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
E +KL KE K K K+ + + K+ KK I EK+ + ++ K +K + N
Sbjct: 55 EFNKLNKEVAKLKIAKEDATELIAETKELKK-EITEKEAEVQEAKAALDAKLKTIGN 110
Score = 26.6 bits (59), Expect = 5.5
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
FEL L KE K K+ K K K+ LI E K+ KK+ K+
Sbjct: 47 FELDSLRKEFNKLNKEVAKLKIAKEDAT----ELIAETKELKKEITEKEA 92
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion
and trafficking].
Length = 150
Score = 27.3 bits (61), Expect = 2.4
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
EL K + +++KK +K K+K ++++ K L E + K KK
Sbjct: 48 ELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKATKKQ 97
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 27.6 bits (62), Expect = 2.5
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 119 FSDNTLCLQLVEGKPNGLLCVLDDQAKAVIC 149
+ N L + PNG+ CVL A++ IC
Sbjct: 579 YGQNELVV------PNGV-CVLVHPARSYIC 602
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 27.9 bits (63), Expect = 2.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
L E ++ + K K +KK K KK+ + LIK+ +K+ K+
Sbjct: 597 LDGEYEEDEYKAKIEKKASKMSKKELEKLIKKLEKEMKE 635
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 27.8 bits (62), Expect = 2.6
Identities = 8/48 (16%), Positives = 21/48 (43%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
+L L+++ K+ K+ K K + +K + ++ + + K
Sbjct: 106 KLLALLEDLDKRALLKELKSKSRLFTPLARKTNLTPEQAARIAELLLK 153
>gnl|CDD|225123 COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC
component [Carbohydrate transport and metabolism].
Length = 472
Score = 27.7 bits (62), Expect = 2.6
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
K K + + + K K+ K + K ++ K KK
Sbjct: 336 KTSKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
Score = 26.9 bits (60), Expect = 4.1
Identities = 9/53 (16%), Positives = 16/53 (30%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
F S ++K K + + + K K+ K + K K
Sbjct: 328 FVVSSLILKTSKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
Score = 26.5 bits (59), Expect = 7.1
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
F +S LI + K + + + K K+ K ++ + K K+
Sbjct: 328 FVVSSLILKTSKTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKK 380
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4;
Provisional.
Length = 191
Score = 27.5 bits (61), Expect = 2.7
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+ KK KKKK +KKK K KKKKK+K++ +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPEL 80
Score = 27.1 bits (60), Expect = 3.3
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
I KK KKKK +KKK KK KKK KE+ + +
Sbjct: 45 IPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the
parasitophorous vacuole membrane. Members have an
initial hydrophobic, Phe/Tyr-rich, stretch long enough
to span the membrane, a highly charged region rich in
Lys, a second putative transmembrane region and a
second highly charged, low complexity sequence region.
Some members have up to 100 residues of additional
C-terminal sequence. These genes have been shown to be
found in the sub-telomeric regions of both Plasmodium
falciparum and P. yoelii chromosomes.
Length = 82
Score = 26.4 bits (59), Expect = 2.7
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLI 37
L+ + KKKK KK KK +KKKK KK +I
Sbjct: 23 LNNNVVAKKKKLKKLKKIDDDLEKKKKNKKKII 55
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 27.6 bits (61), Expect = 2.8
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
E K +K K + + K K +KK + +EK +KKK K +
Sbjct: 198 AEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAA 247
Score = 26.1 bits (57), Expect = 9.5
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
E + K K +KK + ++K +K K K K K ++R+
Sbjct: 209 AEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERK 255
>gnl|CDD|180007 PRK05309, PRK05309, 30S ribosomal protein S11; Validated.
Length = 128
Score = 26.7 bits (60), Expect = 2.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 22 KKKKKKKKKKKKKN 35
KKKK KKK KKN
Sbjct: 1 AKKKKTVKKKVKKN 14
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 27.7 bits (62), Expect = 3.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKK 43
E +K KKKK + K KK K L + KK+K
Sbjct: 573 EAVDEVKFLKKKKGILDAGAFESTLKDKKNKVLPEAKKRK 612
>gnl|CDD|224192 COG1273, COG1273, Ku-homolog [Replication, recombination, and
repair].
Length = 278
Score = 27.3 bits (61), Expect = 3.0
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLI--------KEKKKKKKKKKTKKKSKRR 56
L +LI+ K + +K KK+ + +L+ KK KKK K + +
Sbjct: 218 LMELIEAKLEG-RKTVAAPKKEPPEPSNVIDLMDALKASLEARKKAGKKKPAAKPAAAAK 276
Query: 57 RR 58
++
Sbjct: 277 KK 278
>gnl|CDD|224403 COG1486, CelF, Alpha-galactosidases/6-phospho-beta-glucosidases,
family 4 of glycosyl hydrolases [Carbohydrate transport
and metabolism].
Length = 442
Score = 27.6 bits (62), Expect = 3.0
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 87 ANEHLQYYFNQHVFQYEQEEYNKEGIR---WRHIEFSDNTLCLQ-LVEGKPNGLL 137
++ H YY+ + + + +E K G R E L + ++ KP L
Sbjct: 255 SSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELE 309
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 27.4 bits (61), Expect = 3.1
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
L+K K+ ++ KK K + K K K KK KK
Sbjct: 166 STPHLLKAKEGPSRRAKKAAKLSSTASSGDE---KSPKSKAAPKKAGKK 211
Score = 26.6 bits (59), Expect = 4.6
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKN 35
+K K K KK KK
Sbjct: 190 TASSGDEKSPKSKAAPKKAGKKM 212
Score = 25.9 bits (57), Expect = 9.0
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKK 34
+K K K KK KK +K
Sbjct: 190 TASSGDEKSPKSKAAPKKAGKKMRK 214
>gnl|CDD|222928 PHA02778, PHA02778, major capsid L1 protein; Provisional.
Length = 503
Score = 27.5 bits (62), Expect = 3.1
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 40 KKKKKKKKKTKKKSKRRRRKN 60
+K+K + + +KRRRRK
Sbjct: 483 RKRKSTSSSSSRSTKRRRRKR 503
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 27.4 bits (61), Expect = 3.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+ ++ KKK++ + KKKK+ + L +KK + K K+ S
Sbjct: 82 ASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSS 126
Score = 26.6 bits (59), Expect = 5.2
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKK 41
++ K+K++ + KKKK+ ++ K +KK IKEK+
Sbjct: 87 AEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine
triphosphatases (GTPases). The Ras2 subfamily, found
exclusively in fungi, was first identified in Ustilago
maydis. In U. maydis, Ras2 is regulated by Sql2, a
protein that is homologous to GEFs (guanine nucleotide
exchange factors) of the CDC25 family. Ras2 has been
shown to induce filamentous growth, but the signaling
cascade through which Ras2 and Sql2 regulate cell
morphology is not known. Most Ras proteins contain a
lipid modification site at the C-terminus, with a
typical sequence motif CaaX, where a = an aliphatic
amino acid and X = any amino acid. Lipid binding is
essential for membrane attachment, a key feature of most
Ras proteins.
Length = 190
Score = 27.1 bits (60), Expect = 3.2
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLI 37
F+ L + ++++++ + K KKK+KKK+K ++
Sbjct: 155 FYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 26.1 bits (58), Expect = 3.6
Identities = 12/35 (34%), Positives = 26/35 (74%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
K++K+++K +++++ K+ K K+ I+EK +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 26.4 bits (59), Expect = 3.7
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
ELSK I + KKKK+ + + K+ K + K L E ++ + +
Sbjct: 54 ELSKEIGKAKKKKEDAEALIAEVKELKDELKALEAELRELEAE 96
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 27.4 bits (61), Expect = 3.7
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K+I+ K+++ ++ K K++ K+ E KKK K
Sbjct: 31 KVIELKRERAADRRGDKSGKEELTIVGKHSTIEGAKKKAHVNGVFLGK 78
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 27.2 bits (61), Expect = 3.8
Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKK--NLIKEKKKKKKKKKTKKKSKRRRRK 59
+ ++E+KKK K ++ K +++ +K IKE +++ + + + K + +
Sbjct: 65 YLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIE 124
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 26.6 bits (59), Expect = 3.8
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 19 KKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
K KK KKK KK K K K KK+K +T + R + K
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKK 46
Score = 25.4 bits (56), Expect = 9.4
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
K +K KKK KK K KK K KK+K + + K + KK K RR
Sbjct: 1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRR 52
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 27.1 bits (60), Expect = 3.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLI 37
++ + KEK KK KK K+K+ + K I
Sbjct: 327 MTVVTKEKNKKVPVMFLGKKPKEKEVESKSQCI 359
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 27.1 bits (60), Expect = 3.9
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK 45
F KLI E K K KK K +K ++ K+
Sbjct: 667 FAISKKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKE 710
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 27.1 bits (61), Expect = 4.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKK 28
+ +LIK+ +K +K KKKKK++K
Sbjct: 186 QTEELIKKLLEKPEKPKKKKKRRKG 210
Score = 26.7 bits (60), Expect = 4.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIK 38
+K+ ++ KK +K +K KKKKK++K K
Sbjct: 184 VKQTEELIKKLLEKPEKPKKKKKRRKGFSK 213
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 26.6 bits (59), Expect = 4.2
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
L + ++ + K ++ + +K K K KK K+K
Sbjct: 110 SLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 27.1 bits (60), Expect = 4.2
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 10/44 (22%)
Query: 6 SKLIKEK----------KKKKKKKKKKKKKKKKKKKKKKNLIKE 39
+ IKE+ + K + K +K K+ KK+KK K+
Sbjct: 3 KRKIKEEMLQILAPEIYGPRPVKDEAKPRKIKRVKKRKKREEKD 46
Score = 26.7 bits (59), Expect = 4.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNL 36
+ K + K +K K+ KK+KK+++K L
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKREEKDEL 48
Score = 26.3 bits (58), Expect = 6.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKE 39
K + K +K K+ KK+KK+++K+ + +
Sbjct: 24 VKDEAKPRKIKRVKKRKKREEKDELDD 50
>gnl|CDD|235828 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase;
Validated.
Length = 953
Score = 27.2 bits (61), Expect = 4.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 24 KKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
KK+K+ K+ + + + K K+ K + RRR
Sbjct: 702 SKKEKEDKEAEAAAEAELLAKVKELQKYRPVRRR 735
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 26.9 bits (60), Expect = 4.4
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
F + K+ +++K++ KK K K+K K + K++++ K K
Sbjct: 195 FLKYLKIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
Score = 26.2 bits (58), Expect = 7.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
K+ +K++ KK K K+K K ++ I KK+++ K K
Sbjct: 202 KEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
Score = 26.2 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+K K K+ +K++ KK K K+K K+ KK+++ K K
Sbjct: 193 ENFLKYLKIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2.
Length = 205
Score = 26.8 bits (60), Expect = 4.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKK 43
+ + K IK ++ KK+ K K++ +K +K IK KK
Sbjct: 96 WKTIKKSIKRLEELSKKEALKLKRELEKLEKYLGGIKNMKKL 137
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 26.8 bits (59), Expect = 4.4
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
E K I + K K+ K +K++ + KK++ +K + KKKKK K+K
Sbjct: 29 EAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEK 77
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 27.1 bits (60), Expect = 4.7
Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 10/56 (17%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKE----------KKKKKKKKKTKKKSKRR 56
E K KKKK K K E KK KK +KK + KS +
Sbjct: 408 ESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKV 463
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 26.7 bits (59), Expect = 4.7
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
+K + + K K + KK KK K K KK+ ++++
Sbjct: 154 AKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKK 206
>gnl|CDD|241400 cd13246, PH_Scd1, Shape and Conjugation Deficiency 1 Pleckstrin
homology (PH) domain. Fission yeast Scd1 is an
exchange factor for Cdc42 and an effector of Ras1, the
homolog of the human H-Ras. Scd2/Bem1 mediates Cdc42
activation by binding to Scd1/Cdc24 and to Cdc42. Ras1
regulates Scd1/Cdc24/Ral1, which is a putative guanine
nucleotide exchange factor for Cdc42, a member of the
Rho family of Ras-like proteins. Cdc42 then activates
the Shk1/Orb2 protein kinase. Scd1 interacts with Klp5
and Klp6 kinesins to mediate cytokinesis. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They
share little sequence conservation, but all have a
common fold, which is electrostatically polarized. Less
than 10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 148
Score = 26.5 bits (59), Expect = 4.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKN 35
KE KKKKKK K K KKKKK
Sbjct: 61 KEVKKKKKKSSLKSKSSSSSKKKKKK 86
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 26.8 bits (59), Expect = 4.8
Identities = 14/58 (24%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
M FEL ++ ++K +++++++K++ K K + K K++ K+++ + ++R RR
Sbjct: 1 MDFEL------RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRR 52
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit,
splicing factor. These splicing factors consist of an
N-terminal arginine-rich low complexity domain followed
by three tandem RNA recognition motifs (pfam00076). The
well-characterized members of this family are
auxilliary components of the U2 small nuclear
ribonuclearprotein splicing factor (U2AF). These
proteins are closely related to the CC1-like subfamily
of splicing factors (TIGR01622). Members of this
subfamily are found in plants, metazoa and fungi.
Length = 509
Score = 26.8 bits (59), Expect = 4.9
Identities = 6/52 (11%), Positives = 33/52 (63%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNY 61
+E++K + + + + ++ +++ + ++ +++ ++ +++ ++ S+ R R+ Y
Sbjct: 7 REREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRY 58
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 26.9 bits (60), Expect = 5.1
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKK 34
+KKK++KK+++K+ K+ +
Sbjct: 176 GHSSDSEKKKQRKKQRRKRSKELR 199
Score = 25.7 bits (57), Expect = 9.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 39 EKKKKKKKKKTKKKSKRRRRK 59
+KKK +KK +R+R K
Sbjct: 176 GHSSDSEKKKQRKKQRRKRSK 196
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 26.7 bits (60), Expect = 5.3
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIK 38
K++ + K+ ++K+KK +K I
Sbjct: 517 AYIKEQMEGSAPKEPEEKEKKPEKPEIT 544
Score = 26.3 bits (59), Expect = 7.2
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKK 34
++ + I K++ + K+ ++K+KK +K
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
>gnl|CDD|200594 cd10972, CE4_DAC_u3_5s, Putative catalytic NodB homology domain of
uncharacterized bacterial polysaccharide deacetylases
which consist of a 5-stranded beta/alpha barrel. This
family contains uncharacterized bacterial polysaccharide
deacetylases. Although their biological functions remain
unknown, all members of the family are predicted to
contain a conserved domain with a 5-stranded beta/alpha
barrel, which is similar to the catalytic NodB homology
domain of rhizobial NodB-like proteins, belonging to the
larger carbohydrate esterase 4 (CE4) superfamily.
Length = 216
Score = 26.5 bits (59), Expect = 5.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 93 YYFNQHVFQYEQEEYNKEGIRW 114
+Y N F + Q EY ++ +RW
Sbjct: 55 FYVNPGPFGFGQPEYAEQKLRW 76
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 26.1 bits (58), Expect = 5.5
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKK 42
LIK+KK +K +K+ K ++KK + K+K + KKK
Sbjct: 97 GLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 26.4 bits (58), Expect = 5.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKK 33
EK K KKK K KK KKK+ K+
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.0 bits (57), Expect = 7.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKN 35
K KKK K KK KKK+ K++ N
Sbjct: 210 KYSYKKKLKSKKLKKKQAKREAN 232
Score = 25.6 bits (56), Expect = 10.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKK 31
K+K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 26.9 bits (59), Expect = 5.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 10 KEKKKKKKKKKKKKKKKK 27
K+KK KKKK KKK+ K
Sbjct: 122 KDKKNKKKKSAKKKEAHK 139
Score = 26.5 bits (58), Expect = 7.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKK 45
K KK KKKK KKK+ K + E++ ++K
Sbjct: 122 KDKKNKKKKSAKKKEAHKAQIPPEQQMEEK 151
Score = 26.1 bits (57), Expect = 9.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKK 41
K KK KKKK KKK+ K + E+K
Sbjct: 122 KDKKNKKKKSAKKKEAHKAQIPPEQQMEEK 151
Score = 26.1 bits (57), Expect = 9.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
K + + K KK KKKK KKK+ K I +++ ++K
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEKPSA 154
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 26.4 bits (58), Expect = 5.5
Identities = 9/48 (18%), Positives = 25/48 (52%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
KEK++ + +K K+ ++KK+++K++N ++ + +
Sbjct: 167 KEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTK 214
>gnl|CDD|221673 pfam12626, PolyA_pol_arg_C, Polymerase A arginine-rich C-terminus.
The C-terminus of polymerase A in E coli is
arginine-rich and is necessary for full functioning of
the enzyme.
Length = 123
Score = 26.0 bits (58), Expect = 5.7
Identities = 4/27 (14%), Positives = 18/27 (66%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKK 30
+ +I+ + ++ K+++++ +++KK
Sbjct: 97 QRRAMIEALQGREGGKRRRRRPRRRKK 123
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 26.8 bits (60), Expect = 5.7
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK--KTKKKSKRRRRKNY 61
EL +L +E K+ +++ +K KK KK KK + + +K+++ +K +TK+K +
Sbjct: 335 ELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEELE 394
Query: 62 TK 63
+
Sbjct: 395 EE 396
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 26.3 bits (58), Expect = 5.7
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
F+L KE KK KK K K+K + ++++ +K K+ +
Sbjct: 107 FDLELFPKELYSVMGINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKE 162
>gnl|CDD|220149 pfam09234, DUF1963, Domain of unknown function (DUF1963). This
domain is found in a set of hypothetical bacterial
proteins. Its exact function has not, as yet, been
described.
Length = 221
Score = 26.6 bits (59), Expect = 5.7
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 90 HLQYYFNQHVFQYEQEEYNKEGIRWRHIE-FSDNTLCLQLVE 130
LQ++ + + ++ G R + E ++ L L+E
Sbjct: 47 ILQFFIDLDDDDWGDSPEDQTGFRVIYFEDIIEDLLPKDLIE 88
>gnl|CDD|192718 pfam11176, DUF2962, Protein of unknown function (DUF2962). This
eukaryotic family of proteins has no known function.
Length = 155
Score = 26.1 bits (58), Expect = 5.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
K K KKKK K +K K L + + K +K K + +R
Sbjct: 1 KVTKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRS 45
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in
chromatin remodeling [Chromatin structure and dynamics].
Length = 237
Score = 26.3 bits (58), Expect = 5.9
Identities = 11/53 (20%), Positives = 17/53 (32%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
K K++ K+ + KE KKKK K S + +
Sbjct: 77 TGKNDLPKEEDSSLPSSKETENGDTEGKETDKKKKSSTISKNSPSGEKVKLSP 129
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 26.4 bits (59), Expect = 5.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 36 LIKEKKKKKKKKKTKKKSKRRRRKN 60
IK +K KK + ++SK+RR+K
Sbjct: 181 FIKLRKFSKKSSLSSEESKKRRKKE 205
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The
function is unclear.
Length = 151
Score = 26.1 bits (57), Expect = 5.9
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K++K+ K + +K KKKK + EKK K KKK+ K K
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGK 50
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation
of 60S ribosomal subunits.
Length = 132
Score = 26.2 bits (58), Expect = 5.9
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
I + KK K KKK K +K +KK K+ L EK++ +K + K
Sbjct: 23 ILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 25.8 bits (57), Expect = 7.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
+ KK K KKK K +K +KK K ++ +K++ +K K
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
>gnl|CDD|189987 pfam01440, Gemini_AL2, Geminivirus AL2 protein. Geminiviruses
are small, ssDNA-containing plant viruses.
Geminiviruses contain three ORFs (designated AL1, AL2,
and AL3) that overlap and are specified by multiple
polycistronic mRNAs. The AL2 gene product
transactivates expression of TGMV coat protein gene,
and BR1 movement protein.
Length = 134
Score = 26.0 bits (58), Expect = 5.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 43 KKKKKKTKKKSKRRRR 58
K + + KK++ RRRR
Sbjct: 17 KVQHRIAKKRAIRRRR 32
>gnl|CDD|223624 COG0550, TopA, Topoisomerase IA [DNA replication, recombination,
and repair].
Length = 570
Score = 26.8 bits (60), Expect = 6.0
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK---TKKKSKRRRR 58
++E+ + ++ + + + + KK+ + K K+ +E K K K + K ++R
Sbjct: 195 YWEIKAIFEKGGGEFSARLTEIEGKKEGRLKDKDEAEEIVNKLKGKPAKVVSVEKKPKKR 254
Query: 59 K 59
Sbjct: 255 S 255
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 26.5 bits (59), Expect = 6.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKK 33
L+ K K K + K KK K K
Sbjct: 185 LLLAKHKILIPSLKTRPKGKKYVKIK 210
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 26.5 bits (59), Expect = 6.4
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
F++S+L+K K+ + +KKK+ K E+K KK++KK K K + + R
Sbjct: 631 FDISELMKIKQIFRNWIEKKKEFKILD-------YTEEKTKKEEKKEKNKREEKER 679
>gnl|CDD|223014 PHA03231, PHA03231, glycoprotein BALF4; Provisional.
Length = 829
Score = 26.4 bits (59), Expect = 6.4
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 9/35 (25%)
Query: 38 KEKKKKKKKKKTKKKS---------KRRRRKNYTK 63
+E+++KK KKK + +RRRR Y +
Sbjct: 786 EERQEKKAKKKNSGPALLSSALDRLRRRRRGGYQR 820
>gnl|CDD|188606 TIGR04091, LTA_dltB, D-alanyl-lipoteichoic acid biosynthesis
protein DltB. Members of this protein family are DltB,
part of a four-gene operon for D-alanyl-lipoteichoic
acid biosynthesis that is present in the vast majority
of low-GC Gram-positive organisms. This protein may be
involved in transport of D-alanine across the plasma
membrane [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 380
Score = 26.3 bits (59), Expect = 6.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 11 EKKKKKKKKKKKKK 24
++K KK KK KK K
Sbjct: 342 QRKSKKYKKNKKNK 355
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 26.4 bits (58), Expect = 6.5
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ SK K+ K K ++K+ + KK + K ++ + ++ +K
Sbjct: 3 KASKATKKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSK 62
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 26.1 bits (58), Expect = 6.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
S+ + + KK K+K K+ ++KK + +K +KK
Sbjct: 88 SEELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
>gnl|CDD|223596 COG0522, RpsD, Ribosomal protein S4 and related proteins
[Translation, ribosomal structure and biogenesis].
Length = 205
Score = 26.1 bits (58), Expect = 6.8
Identities = 9/54 (16%), Positives = 22/54 (40%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+KK ++ K++ K++K + +++ KK + R K +
Sbjct: 8 KKKLSRRLGFNPWLKERLCKERKLPYKPGQHGQERWKKLSDYGLQLREKQKLRA 61
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells.
Vacuoles/lysosomes play an important role in the
degradation of both lipids and cellular proteins. In
order to perform this degradative function,
vacuoles/lysosomes contain numerous hydrolases which
have been transported in the form of inactive
precursors via the biosynthetic pathway and are
proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or
Golgi complex, or remain in the limiting membrane of
the MVB and are thereby transported to the limiting
membrane of the vacuole/lysosome as a consequence of
fusion. Therefore, the MVB sorting pathway plays a
critical role in the decision between recycling and
degradation of membrane proteins. A few archaeal
sequences are also present within this family.
Length = 169
Score = 26.1 bits (58), Expect = 6.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
+K ++ KK++ +KK KK + IK+ KK K K+++R
Sbjct: 7 RKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKR 52
Score = 25.7 bits (57), Expect = 9.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
EKK KK + + KK KK K L+K+KK+ +K+
Sbjct: 21 EKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLD 58
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 26.6 bits (60), Expect = 6.9
Identities = 9/40 (22%), Positives = 24/40 (60%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK 45
L KE +++K++K++ +++ K ++ K + +K K +
Sbjct: 474 LDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKDVR 513
>gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 26.4 bits (59), Expect = 6.9
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
+K +++ ++ +K ++ K+ +LIKE KK+ K+
Sbjct: 107 LKLTEEEIEEYLEKLERLKEWGSLADDLIKEVKKEAAKRMV 147
>gnl|CDD|240407 PTZ00412, PTZ00412, leucyl aminopeptidase; Provisional.
Length = 569
Score = 26.5 bits (58), Expect = 7.1
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 20 KKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ K K+K KK +N K+ K +KK+ +++ +
Sbjct: 535 RHNKPPKRKGIKKAQNAKKDLKVVQKKRHGRRRKQ 569
>gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional.
Length = 390
Score = 26.4 bits (59), Expect = 7.3
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 5 LSKLIKE--KKKKKKKKKKKKKKKKKKKKKKKNLIKEKK 41
+ K + E KK+KKKKKKK++K + KK ++E K
Sbjct: 159 VEKRLDELTKKRKKKKKKKEEKVELDVLKKVLEWLEEGK 197
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 25.7 bits (57), Expect = 7.5
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 26/75 (34%)
Query: 12 KKKKKKKKKKKKK--------------KKKKKKKKKKNLIKE------------KKKKKK 45
KKK KK+KK K K+ K +K+ I E KK+++
Sbjct: 88 KKKGIKKRKKSKLVYDEATGEWVPRWGYKRANKDLEKDWIIEVKPNDDPKEDPFAKKRRE 147
Query: 46 KKKTKKKSKRRRRKN 60
KK+ K+++R KN
Sbjct: 148 KKERVAKNEKRELKN 162
>gnl|CDD|219784 pfam08302, tRNA_lig_CPD, Fungal tRNA ligase phosphodiesterase
domain. This domain is found in fungal tRNA ligases
and has cyclic phosphodiesterase activity. tRNA ligases
are enzymes required for the splicing of precursor tRNA
molecules containing introns.
Length = 259
Score = 26.2 bits (58), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKK 33
L+K+I K K K+K + +KKKKK
Sbjct: 44 LTKIIGYGSKNNKNKQKGETPSPEKKKKK 72
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 26.1 bits (58), Expect = 7.7
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 23 KKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
+ K++KK +K +++ ++KK +K + R
Sbjct: 45 RPYSKREKKPYPRPMKLLRREAREKKKLRKLQPERP 80
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 26.6 bits (58), Expect = 7.7
Identities = 8/43 (18%), Positives = 25/43 (58%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
+ ++ K+ ++ ++ K+ KKK +++ ++N + +KK+
Sbjct: 643 RIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGG 685
Score = 26.2 bits (57), Expect = 8.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
K+IK+K KK K K+K ++I +K KK KK
Sbjct: 770 LKVIKKKSNTVKKVVGGIKYSKRKDFNLSHVIINEKVNKKDKK 812
Score = 26.2 bits (57), Expect = 9.3
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
+ IK KKK ++ ++ K+ KKK +++N + +KK+
Sbjct: 641 MRRIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGG 685
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 25.9 bits (57), Expect = 8.2
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIK------------EKKKKKKKKKT 49
E K K K + K + K +K K LIK ++KK++KKK
Sbjct: 15 ALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPK 74
Query: 50 KKKSK 54
KKK
Sbjct: 75 KKKVP 79
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 25.0 bits (55), Expect = 8.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKK 32
I K +KK+K +KK++ KK K
Sbjct: 74 YIPPDKLIRKKRKLPRKKRRPKKPK 98
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 25.8 bits (57), Expect = 8.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
KL +++K++ KKK K +K K+ + K K KK
Sbjct: 154 KLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 26.1 bits (58), Expect = 8.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 26 KKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
K KKK K++ K+K+ +K ++ +K+KR
Sbjct: 239 KLFKKKHGKDISKDKRALQKLRREVEKAKR 268
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
Srw. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srw is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srw do not appear to be
under as strong an adaptive evolutionary pressure as
those of Srz.
Length = 317
Score = 26.0 bits (58), Expect = 8.7
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKK 29
LI E +K KK +K K
Sbjct: 215 LIIELRKAKKSRKNLSSSSNKS 236
Score = 26.0 bits (58), Expect = 9.5
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 36 LIKEKKK-KKKKKKTKKKSKRRRRKNYTK 63
LI E +K KK +K S + R TK
Sbjct: 215 LIIELRKAKKSRKNLSSSSNKSDRT--TK 241
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 26.1 bits (58), Expect = 8.7
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKK-------KKKKKNLIKEKKKKKKKKKTKKKSK 54
K I+E KK K + + + K K + + L K+ K K K K
Sbjct: 205 KAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWK 259
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase.
Length = 763
Score = 26.4 bits (58), Expect = 8.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIK 38
E +LI++ + + + + K KK KK KKKK L K
Sbjct: 228 EGGELIEKPQAEAENEAGKSDKKDKKSKKKKVLGK 262
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 25.8 bits (57), Expect = 8.9
Identities = 10/50 (20%), Positives = 31/50 (62%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
K+K++++K++++ + +++ K+K + ++K ++ K++T K K
Sbjct: 108 LEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEA 157
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 26.3 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKN 35
KL K+ KKK KKK+ KK K+
Sbjct: 601 KKLAKQLKKKALSDGGKKKQGKKAGGGGKS 630
Score = 25.9 bits (57), Expect = 9.7
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
++ + + + KK K+ KKK + K+K+ KK K K+ R + ++ +I
Sbjct: 590 DRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAAAEREIDVSRLDI 645
>gnl|CDD|234350 TIGR03766, TIGR03766, conserved hypothetical integral membrane
protein. Models TIGR03110, TIGR03111, and TIGR03112
describe a three-gene system found in several
Gram-positive bacteria, where TIGR03110 (XrtG) is
distantly related to a putative transpeptidase,
exosortase (TIGR02602). This model describes a small
clade that correlates by both gene clustering and
phyletic pattern, although imperfectly, to the three
gene system. Both this narrow clade, and the larger set
of full-length homologous integral membrane proteins,
have an especially well-conserved region near the
C-terminus with an invariant tyrosine. The function is
unknown.
Length = 483
Score = 26.1 bits (58), Expect = 9.1
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 33 KKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+ K +K K + K+ KRR ++
Sbjct: 323 VLATLSLPTKAEKNKYSIKEIKRRLKE 349
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 25.8 bits (57), Expect = 9.2
Identities = 10/50 (20%), Positives = 32/50 (64%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
KK+ K ++K+ ++++++ ++ +E+KK ++K++ ++K + + K
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREK 54
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 26.2 bits (58), Expect = 9.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K + K +K + KK ++ ++ LI+E K KKKK KKK
Sbjct: 390 KEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEW 437
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 26.1 bits (57), Expect = 9.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
K ++++KKK+K++ KK K + K K+K KKS
Sbjct: 559 KNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKS 598
Score = 26.1 bits (57), Expect = 9.5
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
E+ K +K +K K + + K ++++KKK+K +K K KK+ K
Sbjct: 539 EIYKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIG 587
>gnl|CDD|221324 pfam11933, DUF3451, Domain of unknown function (DUF3451). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 199 to 238 amino acids in length. This domain
is found associated with pfam06512, pfam00520. This
domain has a conserved ADD sequence motif.
Length = 222
Score = 25.9 bits (57), Expect = 9.5
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICHGE 70
K + K+++ + K KK++ +E +K+ K ++R R KT
Sbjct: 4 SKLSSESAKERRNRNDKNKKEEHSIGSEEGDSEKEPKSESADGRKRCRFLLRKTRKVS-- 61
Query: 71 QTLLTSVSFEQLC 83
Q+LL+
Sbjct: 62 QSLLSLPGSPFNT 74
>gnl|CDD|205219 pfam13038, DUF3899, Domain of unknown function (DUF3899).
Putative Tryptophanyl-tRNA synthetase.
Length = 92
Score = 25.0 bits (55), Expect = 9.6
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
++ ++ +KK+K + KK KKKK +
Sbjct: 35 RRLFRQLVEKKEKDSIEEDEFANDKKVKKKKYSVFT 70
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 25.5 bits (56), Expect = 9.7
Identities = 6/41 (14%), Positives = 19/41 (46%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
+K+ +++ +K+K + K++ K+ + + K
Sbjct: 96 SSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVDK 136
>gnl|CDD|220705 pfam10344, Fmp27, Mitochondrial protein from FMP27. This family
contains mitochondrial FMP27 proteins which in yeasts
together with SEN1 are long genes that exist in a looped
conformation, effectively bringing together their
promoter and terminator regions. Pol-II is located at
both ends of FMP27 when this gene is transcribed from a
GAL1 promoter under induced and non-induced conditions.
The exact function of the Fmp27 protein is not certain.
Length = 861
Score = 25.9 bits (57), Expect = 10.0
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
L+ KK K KKKK+ + +L+ K K
Sbjct: 408 LLLSLLNKKLLKSLPSLNKKKKRHRLISLLSRYLPKLNIK 447
>gnl|CDD|220440 pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075).
This domain, found in various prokaryotic proteins
(including putative ATP/GTP binding proteins), has no
known function.
Length = 348
Score = 26.0 bits (58), Expect = 10.0
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIK 38
K + K +K+K K+ + LIK
Sbjct: 299 FDGTKWEDKSAFQKRKDLKEDPEDADRLIK 328
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.368
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,392,624
Number of extensions: 706071
Number of successful extensions: 24039
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12554
Number of HSP's successfully gapped: 3297
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.7 bits)