RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15143
(149 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 124 bits (313), Expect = 5e-34
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 463 SFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGIL 522
Query: 138 CVLDDQAK 145
+LD++ +
Sbjct: 523 DILDEENR 530
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 122 bits (309), Expect = 2e-33
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 397 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 456
Query: 138 CVLDDQ 143
+LD+
Sbjct: 457 SLLDEA 462
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 117 bits (295), Expect = 1e-31
Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVL 506
Query: 138 CVLDDQ 143
+LD++
Sbjct: 507 DLLDEE 512
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 111 bits (281), Expect = 1e-29
Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNG 135
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 136 LLCVLDDQ 143
+L +LD+Q
Sbjct: 525 ILALLDEQ 532
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 111 bits (279), Expect = 2e-29
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 136
SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G+
Sbjct: 472 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGI 530
Query: 137 LCVLDDQ 143
+ +L+++
Sbjct: 531 MSILEEE 537
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 109 bits (275), Expect = 6e-29
Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 136
SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+
Sbjct: 471 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGI 529
Query: 137 LCVLDDQ 143
L +L+++
Sbjct: 530 LSILEEE 536
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 109 bits (273), Expect = 1e-28
Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVL 506
Query: 138 CVLDDQ 143
+LD++
Sbjct: 507 DLLDEE 512
Score = 32.4 bits (74), Expect = 0.044
Identities = 8/62 (12%), Positives = 25/62 (40%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
E L+++ + + +K + ++ + +E K + + ++ + RK +
Sbjct: 943 EYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002
Query: 64 TN 65
T
Sbjct: 1003 TQ 1004
Score = 31.2 bits (71), Expect = 0.12
Identities = 10/62 (16%), Positives = 21/62 (33%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
L +E K + +++ K +K+ EKK ++ K + +
Sbjct: 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030
Query: 64 TN 65
N
Sbjct: 1031 QN 1032
Score = 27.4 bits (61), Expect = 2.2
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
L I + ++K ++ K+ K +K + + +K + + + KN T
Sbjct: 925 GLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATN 984
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 105 bits (263), Expect = 3e-27
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPN 134
SFEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P
Sbjct: 444 SFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPP 503
Query: 135 GLLCVLDDQ 143
GLL +LD++
Sbjct: 504 GLLALLDEE 512
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 103 bits (258), Expect = 1e-26
Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNG 135
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 136 LLCVLDDQ 143
+L +LD+Q
Sbjct: 525 ILALLDEQ 532
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 94.9 bits (236), Expect = 1e-23
Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PN 134
SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPP 534
Query: 135 GLLCVLDDQAK 145
G+L +LD++
Sbjct: 535 GVLALLDEECW 545
Score = 30.2 bits (68), Expect = 0.25
Identities = 11/60 (18%), Positives = 25/60 (41%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+L EKKK +++ +++ ++++ ++ L EK K K + K
Sbjct: 942 RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Score = 29.4 bits (66), Expect = 0.53
Identities = 13/61 (21%), Positives = 29/61 (47%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ +KL KE+K +++ ++++K KNL K K K + + ++ K+ +
Sbjct: 998 QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057
Query: 64 T 64
Sbjct: 1058 L 1058
Score = 26.7 bits (59), Expect = 3.3
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK---TKKKSKRRRRKN 60
KL EK K KK + + + L KE+K +++ T + + KN
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029
Query: 61 YTKTN 65
TK
Sbjct: 1030 LTKLK 1034
Score = 26.0 bits (57), Expect = 6.2
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+ L +E++K K K K K + + + L KE+K +++ +K K+K
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 40.2 bits (93), Expect = 9e-05
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
+ + + + ++KK+ K+ K + ++KKKK+ K K +R+R
Sbjct: 58 TRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 38.3 bits (88), Expect = 4e-04
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
I + + + + + ++KK+ K+ K+ K ++KKKK K+K +R
Sbjct: 54 IGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKR 103
Score = 37.5 bits (86), Expect = 7e-04
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
+ + + + ++KK+ K+ K K ++KKKK+ KTK ++R
Sbjct: 59 RPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 37.5 bits (86), Expect = 7e-04
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ + + + ++KK+ K+ K K ++KKKK+ K +R++ K
Sbjct: 58 TRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
Score = 37.1 bits (85), Expect = 0.001
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+ + + ++KK+ K+ K KK +EKKKK+ K K +R K
Sbjct: 60 PQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
Score = 35.9 bits (82), Expect = 0.003
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
++KK+ K+ K KK K ++KK K K K+++ K + R
Sbjct: 67 PPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics;
5.00A {Barmah forest virus}
Length = 253
Score = 36.1 bits (83), Expect = 0.002
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
L L + K+K+K+ +KK KK K KK K KK +K K K +R R
Sbjct: 48 LGALALQPKQKQKRAQKKPKKTPPPKPKKTQ-----KPKKPTQKKKSKPGKRMR 96
>3biy_A Histone acetyltransferase P300; P300 HAT, bisubstrate inhibitor,
protein-inhibitor complex; HET: 01K; 1.70A {Homo
sapiens}
Length = 380
Score = 36.0 bits (82), Expect = 0.003
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
L + IKE +++++++K+++ + K K KKK KK +K KS R
Sbjct: 226 VLEESIKELEQEEEERKREENTSNESTDVTKGDSKNAKKKNNKKTSKNKSSLSRGNKKKP 285
Query: 64 TNICHGEQ 71
Sbjct: 286 GMPNVSND 293
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 35.2 bits (81), Expect = 0.005
Identities = 8/51 (15%), Positives = 19/51 (37%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
K+ K+ ++K + KK+ K E + + K + + +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLT 678
Score = 32.1 bits (73), Expect = 0.058
Identities = 7/52 (13%), Positives = 19/52 (36%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
K K+ ++K + KK+ + + + + K+ + + T
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTP 679
Score = 28.3 bits (63), Expect = 1.1
Identities = 8/55 (14%), Positives = 17/55 (30%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICHGEQT 72
K K+ ++K + K + + + S + + K EQ
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQD 682
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.008
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 11 EKKKK-KKKKKKKKKKKKKKKKKKKNLIKEKKKK------KKKKKTKKKSKRRRRKN 60
E +K +++++K+ ++ K + +EK KK +++ + +K+K R
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Score = 34.0 bits (77), Expect = 0.010
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E K ++E K +++ ++K KK ++ N + ++ +K K + K
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Score = 32.8 bits (74), Expect = 0.021
Identities = 9/51 (17%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 10 KEKKKK--KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
+E+++K ++ K +++ ++K K ++E +++ ++ K K R
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Score = 27.8 bits (61), Expect = 1.3
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 10 KEKKKKKKKKKKKKK---------KKKKKKKKKKNLIKEKK 41
K +++ ++K KK ++ +K K N I +K
Sbjct: 104 ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
Score = 25.9 bits (56), Expect = 4.9
Identities = 7/62 (11%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ +L +E + +K +++++K+ ++ + K +++ ++K+K+ + +
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQEL---------DAASKVMEQEWREKAKKDLEEWNQR 126
Query: 64 TN 65
+
Sbjct: 127 QS 128
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 34.5 bits (78), Expect = 0.009
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
K ++ KK ++KK KK KK KK ++ +K KK KK ++ K
Sbjct: 361 KSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEK 417
Score = 33.3 bits (75), Expect = 0.024
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
L +EK KK ++KK KK KK K + KK KK K ++
Sbjct: 358 LEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 32.9 bits (74), Expect = 0.028
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+L + K ++K KK ++KK K + KK KK K + ++ +
Sbjct: 348 KLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAAD 404
Score = 32.5 bits (73), Expect = 0.035
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+ E+K KK ++KK KK KK KK KK K +K T+
Sbjct: 359 EAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEE 416
Score = 32.5 bits (73), Expect = 0.037
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K + KK ++KK KK KK KK KK KK +K K
Sbjct: 364 EKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEK 417
Score = 32.5 bits (73), Expect = 0.040
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
K ++KK KK KK KK KK K+ KK + K ++ ++
Sbjct: 367 VPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 32.2 bits (72), Expect = 0.048
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
K + K ++K KK ++KK KK +K+ KK KK K K +
Sbjct: 352 DKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEK 410
Score = 31.8 bits (71), Expect = 0.077
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
++ K + K ++K KK ++KK KK KK KK + ++ K
Sbjct: 350 RMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKP 407
Score = 31.4 bits (70), Expect = 0.090
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
E K+ ++KK KK KK KK KK +K KK KK + ++
Sbjct: 364 EKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 31.4 bits (70), Expect = 0.093
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+ +K ++KK KK KK KK K KK KK +KK +K
Sbjct: 365 KGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 31.0 bits (69), Expect = 0.12
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
E K ++K KK ++KK KK +K KK KK ++ K
Sbjct: 358 LEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKP 412
Score = 31.0 bits (69), Expect = 0.14
Identities = 12/56 (21%), Positives = 21/56 (37%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+ ++ K + K ++K KK ++ K+ KK KK K K
Sbjct: 344 AKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATK 399
Score = 30.2 bits (67), Expect = 0.23
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+ + K + K ++K KK K+ KK KK KK ++ K
Sbjct: 347 HKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKP 401
Score = 29.8 bits (66), Expect = 0.35
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
K KK KK KK KK KK +K +KK +KK
Sbjct: 376 KGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKP 419
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.013
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 28/164 (17%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEK-KKKKKKKKTKKKSKRRRRKNY 61
F +S + E+++ + +++ + + K + + K ++ R
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 62 TKTNICHG-----EQTLLTSV--SFEQLC--------INYAN--------EHLQYYFNQH 98
+ G + + V S++ C +N N E LQ Q
Sbjct: 153 V---LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 99 VFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 142
+ + I+ R L + N LL VL +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLN 252
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 33.6 bits (76), Expect = 0.016
Identities = 9/62 (14%), Positives = 20/62 (32%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICHG 69
++ KK + K K++ K +K K+ + K + + +
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQ 401
Query: 70 EQ 71
Q
Sbjct: 402 GQ 403
Score = 32.5 bits (73), Expect = 0.035
Identities = 11/62 (17%), Positives = 20/62 (32%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICHG 69
+ K K++ K +K K KK K ++ K + I G
Sbjct: 349 EASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQEIKEG 408
Query: 70 EQ 71
++
Sbjct: 409 DE 410
Score = 32.5 bits (73), Expect = 0.037
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
E +K E K K++ K +K K KK + K ++ K+++
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDAD 397
Score = 32.1 bits (72), Expect = 0.048
Identities = 9/59 (15%), Positives = 17/59 (28%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+ K K++ K +K K KK K + R+ ++
Sbjct: 343 QAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQ 401
Score = 30.6 bits (68), Expect = 0.18
Identities = 10/58 (17%), Positives = 18/58 (31%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
K + K K++ K +K K K + K + +K R+
Sbjct: 345 KKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQG 402
Score = 29.8 bits (66), Expect = 0.29
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K K++ KK + K K++ K + KK + +K
Sbjct: 338 KIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEA 387
Score = 29.0 bits (64), Expect = 0.57
Identities = 9/56 (16%), Positives = 20/56 (35%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
E SK ++ K +K K KK + ++ K ++ + ++
Sbjct: 349 EASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQE 404
Score = 28.6 bits (63), Expect = 0.72
Identities = 11/54 (20%), Positives = 19/54 (35%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
K++ KK + K K++ K N K KK + + + K
Sbjct: 339 IVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKAR 392
Score = 28.6 bits (63), Expect = 0.72
Identities = 12/57 (21%), Positives = 22/57 (38%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICHGEQT 72
K K++ KK + K K++ +K +K K K ++ + I Q
Sbjct: 338 KIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQE 394
Score = 27.5 bits (60), Expect = 1.9
Identities = 7/54 (12%), Positives = 17/54 (31%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+ K +K K KK + K + K +++ + ++
Sbjct: 354 KRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQEIKE 407
Score = 26.7 bits (58), Expect = 3.3
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKK---------KKKKKNLIKEKKKKKKKKKTKKKSK 54
E+ ++K + ++KK K K+ K + K K++ K+
Sbjct: 303 EVQSVVKVAGTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKAN 362
Query: 55 RRRRKNYTK 63
R+ K + K
Sbjct: 363 RKAAKTHKK 371
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 33.4 bits (77), Expect = 0.019
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
+++LS K K ++ K+K + + K+ KN K K KK
Sbjct: 724 AYYDLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHH 771
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 33.2 bits (75), Expect = 0.023
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ K + KK KK+K +++KKK +++K+++ KK K++K
Sbjct: 819 ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETK 861
Score = 32.9 bits (74), Expect = 0.029
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ K + KK KK+K +++KKK++ KEK+++ KK K+ + K
Sbjct: 820 RAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNK 871
Score = 32.9 bits (74), Expect = 0.036
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 3 FELSKLIKEKKKKKKKK---------KKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
F ++ +E K+ +K + K + KK KK+K +EKKK+ ++K+ ++++
Sbjct: 793 FSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERET 852
Query: 54 K 54
Sbjct: 853 N 853
Score = 32.5 bits (73), Expect = 0.048
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+ K + KK KK+K +++KK +EK+K+++ K K + + + K
Sbjct: 819 ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKN 870
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 32.2 bits (72), Expect = 0.034
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E K ++E K +++ ++K KK ++ N + ++ +K K + K
Sbjct: 108 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 158
Score = 32.2 bits (72), Expect = 0.042
Identities = 10/54 (18%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKK------KKKKKTKKKSKRRRRKN 60
+K +++++K+ ++ K + +EK KK +++ + +K+K R
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 156
Score = 31.4 bits (70), Expect = 0.078
Identities = 8/49 (16%), Positives = 26/49 (53%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
+++K+ ++ K +++ ++K K ++E +++ ++ K K R
Sbjct: 108 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 156
Score = 29.5 bits (65), Expect = 0.33
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
L +L K +++ ++K KK ++ ++++ EK K + K
Sbjct: 112 RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 32.2 bits (74), Expect = 0.035
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKN 35
+FF+L + I+ +K + K+K KKK+K K+ +
Sbjct: 167 VFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRE 201
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 31.8 bits (73), Expect = 0.042
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKK 34
+F EL L + K+ K+K+ + K
Sbjct: 161 LFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKG 194
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 32.1 bits (72), Expect = 0.044
Identities = 14/50 (28%), Positives = 20/50 (40%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
+ KL E + K+ K K K KK + +K K K+ KS
Sbjct: 268 KKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKS 317
Score = 29.4 bits (65), Expect = 0.38
Identities = 17/62 (27%), Positives = 19/62 (30%), Gaps = 10/62 (16%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK----------KKKTKKK 52
+LS E K+ K K K KK K K K K K KK
Sbjct: 270 LKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKT 329
Query: 53 SK 54
K
Sbjct: 330 GK 331
Score = 29.0 bits (64), Expect = 0.59
Identities = 11/52 (21%), Positives = 17/52 (32%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
KK K + + K+ K K+ K KK K K + +
Sbjct: 260 ASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVD 311
Score = 28.6 bits (63), Expect = 0.65
Identities = 11/52 (21%), Positives = 15/52 (28%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
KK K + + K+ K N K KK K T +
Sbjct: 255 LPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKA 306
Score = 28.6 bits (63), Expect = 0.85
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+ K+ K + + K+ K K K K K +K K K
Sbjct: 264 NPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKS 313
Score = 27.5 bits (60), Expect = 1.9
Identities = 11/52 (21%), Positives = 17/52 (32%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ L KK K + + K+ K +K KK K +K
Sbjct: 257 EPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALA 308
Score = 26.3 bits (57), Expect = 4.7
Identities = 10/56 (17%), Positives = 18/56 (32%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
KK K + + K+ K K KK +K + ++ K+
Sbjct: 259 PASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSG 314
Score = 25.9 bits (56), Expect = 6.6
Identities = 10/48 (20%), Positives = 16/48 (33%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
L +K K + + K+ K K K+ K +K K
Sbjct: 262 LPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 31.9 bits (73), Expect = 0.047
Identities = 5/29 (17%), Positives = 18/29 (62%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKK 30
F + + ++ ++ K+K +++ +K+K+
Sbjct: 163 FEGIVRQVRLRRDSKEKNERRLAYQKRKE 191
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 32.3 bits (74), Expect = 0.053
Identities = 2/39 (5%), Positives = 17/39 (43%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
+E++K + + +++ + +++++ +
Sbjct: 731 SRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 27.0 bits (60), Expect = 2.7
Identities = 3/48 (6%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 7 KLI--KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
I + ++ ++++K + + + K ++++ +
Sbjct: 722 GWIIDRFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 31.8 bits (73), Expect = 0.059
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
+ K I ++ K K+ K +K+K +KK +I+++ + K ++K
Sbjct: 58 SVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104
Score = 29.5 bits (67), Expect = 0.39
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKK-----KKKKKKTKKKSKRRRRKNYTKTN 65
E KK +K+ K+ K K+ K+LI EK+K K+ +K + K R K N
Sbjct: 51 EHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110
Query: 66 ICH 68
I H
Sbjct: 111 IVH 113
Score = 28.4 bits (64), Expect = 0.89
Identities = 11/32 (34%), Positives = 11/32 (34%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKN 35
E IKE K KK K K K K
Sbjct: 440 EFIPYIKELPKNTTSVKKAKGKNPKNTTSVKK 471
Score = 27.6 bits (62), Expect = 1.6
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKK 44
K+ K KK K K K +K K K
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 27.6 bits (62), Expect = 1.9
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKK 42
+ I K+ K KK K K K ++ K K K
Sbjct: 438 EPEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 27.2 bits (61), Expect = 2.2
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK 45
K+ K KK K K KN KK K K
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 26.8 bits (60), Expect = 3.0
Identities = 10/27 (37%), Positives = 10/27 (37%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKN 35
KK K K K KK K KN
Sbjct: 450 KNTTSVKKAKGKNPKNTTSVKKAKGKN 476
Score = 26.8 bits (60), Expect = 3.1
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 29 KKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
K+ KN KK K K K K+ + KN
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGKN 476
Score = 26.0 bits (58), Expect = 5.9
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKK 43
K+ K KK K K K +K+ K K
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 25.7 bits (57), Expect = 6.7
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKK 32
EL K KK K K K KK K K
Sbjct: 447 ELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 31.4 bits (70), Expect = 0.061
Identities = 5/42 (11%), Positives = 20/42 (47%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
E + +K+K ++ K+ ++++ + + K+ ++
Sbjct: 134 ENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEA 175
Score = 29.8 bits (66), Expect = 0.21
Identities = 7/52 (13%), Positives = 27/52 (51%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+I+E K+++ + + +K+K ++ K + + + + + K+ +++
Sbjct: 123 VIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQE 174
Score = 28.3 bits (62), Expect = 0.83
Identities = 5/43 (11%), Positives = 19/43 (44%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
+ +K+K ++ K+ ++++ + + K+ K+
Sbjct: 135 NTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADD 177
Score = 27.9 bits (61), Expect = 1.1
Identities = 5/39 (12%), Positives = 20/39 (51%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
+ +K+K ++ K+ ++++ + + K+ K++
Sbjct: 138 DVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEAD 176
Score = 26.4 bits (57), Expect = 3.7
Identities = 8/45 (17%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
FFE + K+K ++ K+ ++++ + + +N K++
Sbjct: 132 FFE-NTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEA 175
Score = 26.4 bits (57), Expect = 3.7
Identities = 5/44 (11%), Positives = 22/44 (50%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
K+++ + + +K+K + K ++++ + + ++K+
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT 171
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 31.0 bits (71), Expect = 0.097
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKK 30
F+ L + I++ K+K K KKKKKK K K
Sbjct: 156 AFYTLVREIRKHKEKMSKDGKKKKKKSKTK 185
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl
protease, glycoprotein, hydrolase, signal, zymogen; HET:
IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB:
1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A*
1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A*
2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Length = 453
Score = 31.3 bits (71), Expect = 0.10
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 4 ELSKLIKEKKKK----KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
E+++++K + K + + K K K KN IKE TK
Sbjct: 69 EMNEILKNSEHLTIGFKVENAHDRILKTIKTHKLKNYIKESVNFLNSGLTKTNYLGSSND 128
Query: 60 NYTKTNI 66
N +
Sbjct: 129 NIELVDF 135
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome,
secreted, hydrolase; 2.70A {Homo sapiens}
Length = 393
Score = 31.2 bits (70), Expect = 0.10
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK--KKKTKKKSKRRRRKNYT 62
LSK + KK K +K + K + + L+ K + + S + R +++
Sbjct: 21 LSK--SDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESVVLEHRSYCSAKARDRHFA 78
Query: 63 KTNIC 67
+
Sbjct: 79 GDVLG 83
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 30.6 bits (70), Expect = 0.11
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKK 42
L K K++ + + + + +K+ + L+KE +
Sbjct: 159 LPKP-----KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.5 bits (62), Expect = 1.3
Identities = 4/30 (13%), Positives = 14/30 (46%)
Query: 24 KKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
K++ + + L++ +K+ + K +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQG 192
Score = 26.8 bits (60), Expect = 2.7
Identities = 2/27 (7%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 33 KKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K+ + + + + +K+++ ++
Sbjct: 163 KREAFL-EANRAELVRFQKEARALLKE 188
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 31.3 bits (71), Expect = 0.11
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKK 42
EL L++ +K +KKKKKK K + E+ +
Sbjct: 360 ELKALLQSSASRKTQKKKKKKASKTAENATSGETLEENE 398
Score = 26.3 bits (58), Expect = 5.4
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
+K + +K +KKKKKK K +N + ++ +
Sbjct: 361 LKALLQSSASRKTQKKKKKKASKTAENATSGETLEENE 398
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 31.0 bits (71), Expect = 0.11
Identities = 11/49 (22%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKN-LIKEKKKKKKKKKTKKKSK 54
+ K + ++ ++++ K++K+ + E+++++KK KTKK K
Sbjct: 212 YVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 27.2 bits (61), Expect = 2.1
Identities = 9/49 (18%), Positives = 28/49 (57%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
++ ++ ++E ++++ K++K+ + ++ ++K K KK +KT
Sbjct: 213 VWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 31.0 bits (70), Expect = 0.11
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E + E ++ ++ + K++ + + KKKKKK KK+
Sbjct: 59 ESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGP 109
Score = 29.9 bits (67), Expect = 0.34
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKK 34
KKKKKKKKK+ K
Sbjct: 87 DGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 29.5 bits (66), Expect = 0.44
Identities = 10/49 (20%), Positives = 24/49 (48%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+ ++ ++ ++ + K++ + + +KKKKKKKK+ K
Sbjct: 63 SVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 29.5 bits (66), Expect = 0.47
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+ ++ ++ + K++ + + + KKKKKKK K+ K
Sbjct: 66 EVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 28.7 bits (64), Expect = 0.65
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+ ++ ++ + K++ + ++ + KKK KKK KR
Sbjct: 62 ASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
Score = 28.7 bits (64), Expect = 0.71
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKN 35
KKKKKKKKK+ K + +
Sbjct: 89 DGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 28.3 bits (63), Expect = 1.1
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
+L + E K++ + + KKK KKKKKK+ +
Sbjct: 70 QLERSALEDKERDEDDEDGDGDGDGATGKKK-----KKKKKKRGPKVQTD 114
Score = 28.0 bits (62), Expect = 1.3
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+E ++ KKK++KKKK K + E++ K+ + + R
Sbjct: 24 EEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVAR 69
Score = 27.6 bits (61), Expect = 1.9
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYT 62
+ ++ ++ + K++ + KK KKK K+R K T
Sbjct: 63 SVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQT 113
Score = 26.0 bits (57), Expect = 5.4
Identities = 7/48 (14%), Positives = 20/48 (41%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
+ ++ ++ + K++ + + + K KKK K++R
Sbjct: 60 SGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
Score = 26.0 bits (57), Expect = 5.8
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
E + E+ KKK++KKKK K +++ + + + ++
Sbjct: 25 EGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLER 73
Score = 25.7 bits (56), Expect = 8.0
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+L +E+ ++ KKK++KKKK K +++ K+
Sbjct: 17 DLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVD 65
Score = 25.3 bits (55), Expect = 9.5
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
++++ ++ KKK++KKKK +++ K++
Sbjct: 21 DDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVD 65
Score = 25.3 bits (55), Expect = 9.5
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
++ ++ KKK++KKKK K +++ K+ +
Sbjct: 23 REEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDE 66
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 30.4 bits (68), Expect = 0.17
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
++ + I+ K +KK K++ + KK K K+++ + K
Sbjct: 239 IYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKI 290
Score = 25.4 bits (55), Expect = 8.1
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ + K +KK ++ + KK + K SK R
Sbjct: 241 TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAAR 285
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 30.4 bits (68), Expect = 0.19
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
M+ + I+E +KK KK+ KKK+ + K K+ + +KK + +R
Sbjct: 239 MYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293
Score = 26.5 bits (58), Expect = 3.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
K ++ +KK KK+ KKK+ N K +KK + +KK+ R
Sbjct: 242 KAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLR 289
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 30.4 bits (68), Expect = 0.19
Identities = 9/53 (16%), Positives = 19/53 (35%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
++ ++ I+ K KK+ K+ KK + K ++ S
Sbjct: 239 LYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSS 291
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 29.9 bits (68), Expect = 0.23
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 20 KKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
+K + ++ + +K+K K
Sbjct: 231 SAGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
Score = 28.7 bits (65), Expect = 0.57
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 21 KKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
+K + ++ L++ +K+K K
Sbjct: 231 SAGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
Score = 26.4 bits (59), Expect = 4.3
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 19 KKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
+K + ++ +K+K K
Sbjct: 231 SAGQKVGLRAARRTGLVRGGQKEKMAMKAA 260
Score = 25.3 bits (56), Expect = 8.0
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKK 31
L ++ + +K+K K
Sbjct: 237 GLRAARRTGLVRGGQKEKMAMKAAA 261
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 140
Score = 29.6 bits (67), Expect = 0.23
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNL 36
K K ++ + +K + +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKI 27
Score = 28.0 bits (63), Expect = 0.83
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKK 33
K K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARK 26
Score = 26.9 bits (60), Expect = 2.0
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKK 33
+K I + ++ + +K +K K
Sbjct: 2 AKPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.1 bits (58), Expect = 3.9
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKE 39
K K ++ + +K I +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 4.0
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKN 35
K ++ + +K +K
Sbjct: 4 PIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.4 bits (56), Expect = 5.6
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 24 KKKKKKKKKKKNLIKEKKKKKKKKKTK 50
K K ++ I +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.0 bits (55), Expect = 9.1
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 23 KKKKKKKKKKKKNLIKEKKKKKKK 46
K K ++ + K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARK 26
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 29.9 bits (67), Expect = 0.31
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 4 ELSKLIKEKKKKKKKKKKKK-----KKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
+ +K K ++ + + K K+ + K KKK KT K +R
Sbjct: 319 RIRSGVKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRG 378
Query: 59 K 59
K
Sbjct: 379 K 379
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 29.8 bits (66), Expect = 0.35
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
++ + + K +K+K K+ K +E K K K K+
Sbjct: 336 YFGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKT 384
Score = 27.9 bits (61), Expect = 1.5
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+ E + K +K+K K+ K ++ +K K K
Sbjct: 343 MATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDS 389
Score = 27.5 bits (60), Expect = 1.7
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+K + + K +K+K K+ + ++ K K K K
Sbjct: 341 RKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYK 383
Score = 27.5 bits (60), Expect = 1.9
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYT 62
K + + K +K+K K+ L E+ K K +Y
Sbjct: 341 RKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDSDYA 392
Score = 27.1 bits (59), Expect = 2.8
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
+++ L + + K +K+K K+ K ++ + K K
Sbjct: 342 KMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKT 384
Score = 26.3 bits (57), Expect = 4.4
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+K + + K + + K+ K + K K + Y
Sbjct: 338 GTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKT 384
Score = 26.0 bits (56), Expect = 6.2
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K+ + + K +K+K K+ K + K K K KT
Sbjct: 340 ARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDS 389
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 29.4 bits (65), Expect = 0.39
Identities = 5/37 (13%), Positives = 18/37 (48%)
Query: 22 KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
+ KK + + +++ + + K +++ K+ + R
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPELGLR 272
Score = 27.1 bits (59), Expect = 2.5
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKN 35
++L K + + + + + K ++ K+
Sbjct: 235 YQLKKDDAQGRTLRDVGELTRSSTKTRRSIKRP 267
Score = 26.7 bits (58), Expect = 3.4
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 21 KKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
+ KK + + + + K ++ K+ R
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPELGLR 272
Score = 26.0 bits (56), Expect = 5.8
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNL 36
+ + + + + K ++ K+ + L
Sbjct: 239 KDDAQGRTLRDVGELTRSSTKTRRSIKRPELGL 271
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 29.5 bits (67), Expect = 0.41
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+ K+KK +KE + + +KK ++
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 28.7 bits (65), Expect = 0.70
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
L E K+KK + K+ + + + ++K KK
Sbjct: 197 NFDGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 28.7 bits (65), Expect = 0.72
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
+ + K+KK + K+ + + +++EKK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 27.9 bits (63), Expect = 1.6
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
+ K+KK + K+ I E ++KK KK +
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 26.4 bits (59), Expect = 4.7
Identities = 4/42 (9%), Positives = 14/42 (33%)
Query: 19 KKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ K+KK ++ + + ++K ++
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_G
Length = 219
Score = 29.2 bits (65), Expect = 0.41
Identities = 14/76 (18%), Positives = 20/76 (26%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
L K K K +K + K K + +K R T +
Sbjct: 24 GLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPGTVLIL 83
Query: 67 CHGEQTLLTSVSFEQL 82
G V +QL
Sbjct: 84 LAGRYMGKRVVFLKQL 99
Score = 28.1 bits (62), Expect = 1.1
Identities = 11/69 (15%), Positives = 23/69 (33%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICHGEQ 71
++ K K K +K + + K K + S R+ ++ I G
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPGTV 80
Query: 72 TLLTSVSFE 80
+L + +
Sbjct: 81 LILLAGRYM 89
Score = 26.9 bits (59), Expect = 2.3
Identities = 8/51 (15%), Positives = 16/51 (31%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
+ + K K K +K + K + K + + +K R
Sbjct: 23 RGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRS 73
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 29.2 bits (66), Expect = 0.42
Identities = 10/42 (23%), Positives = 25/42 (59%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
++EK K K+ +++ +K++++ +KK L+ + K+K
Sbjct: 9 GKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEK 50
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 29.2 bits (65), Expect = 0.45
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLI 37
+ + + K K+ +K +I
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSNVII 38
Score = 28.0 bits (62), Expect = 1.3
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLI 37
+ K K+ +K +I
Sbjct: 12 NRDISSRSNGKNPFKRSTGRKVSNVIII 39
Score = 27.6 bits (61), Expect = 1.7
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLI 37
++ + K K+ +K +I
Sbjct: 13 RDISSRSNGKNPFKRSTGRKVSNVIIII 40
Score = 26.8 bits (59), Expect = 3.4
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLI 37
+ + + + K K+ +K + +
Sbjct: 9 EPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 26.5 bits (58), Expect = 3.9
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIK 38
+E + + + K K+ +K
Sbjct: 8 QEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 26.5 bits (58), Expect = 4.6
Identities = 3/33 (9%), Positives = 13/33 (39%)
Query: 20 KKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
++ ++ + + ++ K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 25.7 bits (56), Expect = 7.6
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKK 30
++ I + K K+ +K
Sbjct: 12 NRDISSRSNGKNPFKRSTGRKVSNV 36
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_X 2go5_4 2j37_4
Length = 152
Score = 28.7 bits (64), Expect = 0.48
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K KK K ++ K K K IK K KK + T + K ++
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKA 51
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 29.3 bits (65), Expect = 0.48
Identities = 11/61 (18%), Positives = 23/61 (37%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+ ++ ++ K K K K K + E KKK ++ ++ K + +
Sbjct: 477 IDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREE 536
Query: 65 N 65
N
Sbjct: 537 N 537
Score = 29.0 bits (64), Expect = 0.61
Identities = 11/61 (18%), Positives = 24/61 (39%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ + + ++ K K K K K KK K+K ++ +++ K + + K
Sbjct: 479 AKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENK 538
Query: 64 T 64
Sbjct: 539 Q 539
Score = 29.0 bits (64), Expect = 0.70
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
L I KK++ ++ K K K K+ +K + KKK ++ ++ + T
Sbjct: 473 LQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQAT 532
Score = 28.6 bits (63), Expect = 0.95
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
L K K K K KK + KKK ++E+ K + + T ++ ++ +K N
Sbjct: 491 LKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLN 548
Score = 26.6 bits (58), Expect = 3.5
Identities = 18/84 (21%), Positives = 37/84 (44%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYT 62
FE S + + K KK++ ++ K K + + K KK ++KKK+ +R +
Sbjct: 466 FEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLM 525
Query: 63 KTNICHGEQTLLTSVSFEQLCINY 86
K + ++ ++ +NY
Sbjct: 526 KLEVQATDREENKQIALGTSKLNY 549
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 28.6 bits (64), Expect = 0.49
Identities = 3/25 (12%), Positives = 6/25 (24%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLI 37
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
Score = 28.3 bits (63), Expect = 0.65
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKN 35
KK +K+ +N
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANEN 26
Score = 27.1 bits (60), Expect = 1.8
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 39 EKKKKKKKKKTKKKSKRRRRKNYTKTNICH 68
KK +K+ N +CH
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVFGVCH 32
Score = 27.1 bits (60), Expect = 2.0
Identities = 3/23 (13%), Positives = 7/23 (30%)
Query: 25 KKKKKKKKKKNLIKEKKKKKKKK 47
KK +K+ + +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 26.3 bits (58), Expect = 2.8
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKK 33
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 26.3 bits (58), Expect = 2.9
Identities = 2/26 (7%), Positives = 6/26 (23%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKN 35
+K +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVF 28
Score = 25.9 bits (57), Expect = 4.2
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 24 KKKKKKKKKKKNLIKEKKKKKKK 46
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 25.9 bits (57), Expect = 4.3
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIK 38
KK +K+ N
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
Score = 25.2 bits (55), Expect = 8.3
Identities = 3/23 (13%), Positives = 7/23 (30%)
Query: 23 KKKKKKKKKKKKNLIKEKKKKKK 45
KK +K+ + +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 25.2 bits (55), Expect = 8.4
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 26 KKKKKKKKKNLIKEKKKKKKKKKTK 50
KK +K +I +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 28.9 bits (65), Expect = 0.60
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
M L +LI K +++ KK+KK+ + KK + + +
Sbjct: 460 MPPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQ 507
Score = 28.9 bits (65), Expect = 0.62
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
EL +K +++ KK+KK+ + KKK + + + +
Sbjct: 466 ELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVT 512
Score = 27.0 bits (60), Expect = 2.5
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
K +++ KK+KK+ + KKK ++ + + + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTD 513
Score = 26.2 bits (58), Expect = 5.4
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK 45
K +++ KK+KK+ + KKK + ++ + + +
Sbjct: 467 LIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 29.0 bits (64), Expect = 0.60
Identities = 12/62 (19%), Positives = 29/62 (46%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+SK + E +KK + +K +K K +++K + +++K + K +K +
Sbjct: 1 MSKFVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIV 60
Query: 65 NI 66
+
Sbjct: 61 DE 62
Score = 28.2 bits (62), Expect = 1.0
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
EK +K K +++K + K++K + + K +K + + +KK +RK
Sbjct: 16 DEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRK 65
Score = 27.1 bits (59), Expect = 2.2
Identities = 10/57 (17%), Positives = 24/57 (42%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
+ +++K + K++K + K + E + +KK +K+ R+ Y
Sbjct: 21 KAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAE 77
Score = 26.3 bits (57), Expect = 3.8
Identities = 11/59 (18%), Positives = 25/59 (42%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ K + +K +K K +++K + K++K K +K + + K K +
Sbjct: 9 VQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKAR 67
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 28.6 bits (64), Expect = 0.62
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
E + K + K +K + K K ++ K+K K +
Sbjct: 81 EARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSS 120
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 28.6 bits (63), Expect = 0.63
Identities = 7/57 (12%), Positives = 21/57 (36%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
+ ++ +K K+K+ ++ KE + ++ K+ + Y +
Sbjct: 24 EQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQ 80
Score = 28.2 bits (62), Expect = 0.82
Identities = 7/49 (14%), Positives = 24/49 (48%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
++K ++ ++ +K K+K+ L + +K+ + ++ + +R
Sbjct: 19 QQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKR 67
Score = 28.2 bits (62), Expect = 1.0
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
KK K ++K ++ ++ +K N K ++ +K+ + R
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER 60
Score = 27.9 bits (61), Expect = 1.2
Identities = 7/56 (12%), Positives = 20/56 (35%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
E + KK K ++K ++ ++ + ++K+ ++ K
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQA 65
Score = 26.7 bits (58), Expect = 2.9
Identities = 10/56 (17%), Positives = 25/56 (44%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
K ++K ++ ++ +K K+K+ +I E+ +K+ + + K K
Sbjct: 17 KAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAA 72
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 28.2 bits (63), Expect = 0.65
Identities = 9/49 (18%), Positives = 23/49 (46%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ K+ +KK ++ + KE++ K +K+ K+ R + ++
Sbjct: 89 ARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVRS 137
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 28.7 bits (65), Expect = 0.65
Identities = 7/52 (13%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
++ +++ + +KK ++K E+ + ++K+K +R
Sbjct: 147 MTDQ-----VLDSIREELEALEKKYEEKTGLPSPERVEARQKRKAGVGFGKR 193
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 28.3 bits (64), Expect = 0.66
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKN 35
LS L ++K +K+ K+ +KK+K K + +
Sbjct: 151 LSILKRKKFEKELKELQKKQKHKLEHHHHHH 181
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 28.5 bits (64), Expect = 0.72
Identities = 4/28 (14%), Positives = 15/28 (53%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKK 29
F K++ + ++K+ +++K ++
Sbjct: 171 FDTAIKVVLQPPRRKEVPRRRKNHRRSG 198
Score = 25.0 bits (55), Expect = 9.4
Identities = 2/24 (8%), Positives = 13/24 (54%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIK 38
+ ++K+ +++K ++ ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSGCSIAS 203
Score = 25.0 bits (55), Expect = 9.6
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKK 32
IK + ++K+ +++K ++
Sbjct: 174 AIKVVLQPPRRKEVPRRRKNHRRSG 198
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 198
Score = 28.4 bits (63), Expect = 0.73
Identities = 6/56 (10%), Positives = 18/56 (32%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
++S + +K +K K + + + T +++ + K
Sbjct: 39 QISCISSKKLHTQKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPK 94
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 28.5 bits (63), Expect = 0.75
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ K KK K K+ KK K ++K + K K S+
Sbjct: 260 RVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 28.5 bits (64), Expect = 0.80
Identities = 4/42 (9%), Positives = 15/42 (35%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
L E++++ + K + L + + + ++
Sbjct: 280 LAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 26.5 bits (59), Expect = 4.2
Identities = 3/42 (7%), Positives = 14/42 (33%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
L+ +++ + K + + L+ + + +
Sbjct: 280 LAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 25.8 bits (57), Expect = 6.2
Identities = 3/32 (9%), Positives = 12/32 (37%)
Query: 21 KKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
++ + + L E++++ T +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRA 296
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere,
CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Length = 156
Score = 28.0 bits (61), Expect = 0.97
Identities = 8/90 (8%), Positives = 25/90 (27%), Gaps = 1/90 (1%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICHGEQTL 73
+++ +K + +++ ++ + RR+ I Q
Sbjct: 15 NSMGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWLKEIRK-LQKS 73
Query: 74 LTSVSFEQLCINYANEHLQYYFNQHVFQYE 103
+ + A E + F ++
Sbjct: 74 THLLIRKLPFSRLAREICVKFTRGVDFNWQ 103
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 28.2 bits (63), Expect = 0.97
Identities = 9/34 (26%), Positives = 23/34 (67%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
+ K+ +K+++ ++K ++ L KEK +K++ +K
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 27.4 bits (61), Expect = 1.7
Identities = 8/44 (18%), Positives = 23/44 (52%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKK 44
+ + K+ +K+++ ++K ++ K K+ KE+ +K+
Sbjct: 297 DLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 25.5 bits (56), Expect = 7.7
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+ K+ +K+++ ++K K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 28.3 bits (63), Expect = 1.0
Identities = 7/42 (16%), Positives = 29/42 (69%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+ K++ + +KKK++++++ + + K+++++++ +K+K
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKE 430
Score = 26.8 bits (59), Expect = 3.6
Identities = 12/63 (19%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKK----------NLIKEKKKKKKKKKTKKKSKRR 56
K +E++ + + + K+++++++K +K K +L+ + + K K KR
Sbjct: 402 KEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSGEVFDKDLSKLKRN 461
Query: 57 RRK 59
R++
Sbjct: 462 RKR 464
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 27.9 bits (62), Expect = 1.1
Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKK----------KKKKKKKKNLIKEKKKKKKKKKTKK 51
F + +++KE + K+ + + +K++KK L ++KK+ + ++ K
Sbjct: 67 FNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKF 126
Query: 52 KSK 54
+
Sbjct: 127 EED 129
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 28.1 bits (62), Expect = 1.1
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKK-KKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYT 62
+ L+K+ + + ++ K+K + + L KK+K + SK+ + +
Sbjct: 254 SMRNLVKKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEE 313
Query: 63 KTN 65
T+
Sbjct: 314 WTD 316
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 27.5 bits (62), Expect = 1.3
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKK 34
++++ K+K + K + + K +
Sbjct: 156 MTQVDKKKVRPKLNELIRDYKATHSLEHHH 185
Score = 27.1 bits (61), Expect = 1.9
Identities = 3/29 (10%), Positives = 9/29 (31%)
Query: 33 KKNLIKEKKKKKKKKKTKKKSKRRRRKNY 61
K ++ K + + S ++
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHHHH 188
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 27.8 bits (61), Expect = 1.5
Identities = 9/63 (14%), Positives = 27/63 (42%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
+K +K+ + K+ +++ + +K+ E KK K + + +++ + +
Sbjct: 306 TKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEKIPENE 365
Query: 66 ICH 68
H
Sbjct: 366 TTH 368
Score = 26.3 bits (57), Expect = 4.4
Identities = 7/56 (12%), Positives = 23/56 (41%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+K++ + K+ +++ + +K+ + ++ KK K + + K
Sbjct: 305 ATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEK 360
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 27.5 bits (60), Expect = 1.7
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
E++ + K K + KKK + + + ++ + K
Sbjct: 521 EVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAK 565
Score = 27.5 bits (60), Expect = 2.2
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
+ K + K K + KKK + +E + + K
Sbjct: 515 MLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAK 565
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_e
Length = 244
Score = 27.5 bits (60), Expect = 1.8
Identities = 7/60 (11%), Positives = 25/60 (41%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
+ EK K+++++ +KK+K + + + K + ++ + ++ +
Sbjct: 8 VAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQL 67
Score = 26.0 bits (56), Expect = 4.9
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
++K+K +K K + K + + E + + K+ K+ R + Y
Sbjct: 26 AEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPE 82
Score = 26.0 bits (56), Expect = 5.1
Identities = 10/58 (17%), Positives = 23/58 (39%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
EKK+K +K K + K + + + + K+ + K + R + + +
Sbjct: 23 VWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVS 80
Score = 25.6 bits (55), Expect = 7.4
Identities = 8/55 (14%), Positives = 19/55 (34%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTN 65
+ K +K K+++++ ++ +K K K R + Y
Sbjct: 3 SEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEY 57
Score = 25.2 bits (54), Expect = 9.6
Identities = 9/50 (18%), Positives = 23/50 (46%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
+E +KK+K +K K + K + ++ + + K+ + +R+
Sbjct: 21 EEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKRE 70
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 27.4 bits (61), Expect = 1.9
Identities = 4/40 (10%), Positives = 13/40 (32%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
+ + + + K ++ + +K K K+
Sbjct: 77 DAAIAQAETAGTDAPTEAALKAERTFMAGEKAKPGVKELA 116
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 27.3 bits (61), Expect = 2.0
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
+K K+ + KK + K K + + E K K
Sbjct: 66 QKDLMAKRTAEFNKKADENKVKGEAFLTENKNKPGVVVLP 105
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 27.4 bits (60), Expect = 2.0
Identities = 6/107 (5%), Positives = 35/107 (32%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTK 63
+ +++++ +K ++ ++ +++ + +K K + + ++ +
Sbjct: 98 GPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKY 157
Query: 64 TNICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKE 110
+ + + H +Y Q + +++
Sbjct: 158 QEASKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQL 204
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 27.2 bits (60), Expect = 2.1
Identities = 5/54 (9%), Positives = 23/54 (42%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ +++ +++ ++KK ++ ++ + + T + K ++ N
Sbjct: 271 AVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSN 324
Score = 26.4 bits (58), Expect = 3.7
Identities = 7/44 (15%), Positives = 22/44 (50%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
K + +++ +++ ++KK N+ + +++ K K + S
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGD 310
Score = 25.2 bits (55), Expect = 9.0
Identities = 4/51 (7%), Positives = 17/51 (33%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+ +++ +++ ++KK ++ + K K +
Sbjct: 265 AAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDT 315
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 26.7 bits (59), Expect = 2.1
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 88 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 121
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P
3u5g_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 26.6 bits (58), Expect = 2.7
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKK----KKKKKTKKKSKRRR 57
KL ++ + + KK+ K K +K K+
Sbjct: 9 LNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAI 68
Query: 58 RK 59
RK
Sbjct: 69 RK 70
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 27.1 bits (61), Expect = 2.7
Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKK---KKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ K K+ ++ ++K K K +++ ++ + K+ + + R
Sbjct: 801 WRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQ 860
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 26.1 bits (58), Expect = 2.9
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKK 44
++KE + + K+ +K++ K K K +
Sbjct: 72 ILWNHGILKEVVPEGYEMKRVGDYYVFEKRESK---KSKGGEA 111
Score = 25.0 bits (55), Expect = 6.5
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
K+ + + K+ +K++ KK+K
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 26.9 bits (59), Expect = 2.9
Identities = 9/58 (15%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 2 FFELSKLIKEKKKKKKKKKK-----KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
F +++ +++ ++ + + +++KK + KE+KK K+K+ +
Sbjct: 82 FESWREILDKRQHPIRRLELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH,
PAS, circadian rhythm proteins, transcription-activato;
2.27A {Mus musculus}
Length = 361
Score = 26.8 bits (59), Expect = 3.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 38 KEKKKKKKKKKTKKKSKRRRRK 59
+E K K K+ ++ KS+++RR
Sbjct: 4 EEDDKDKAKRVSRNKSEKKRRD 25
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 25.8 bits (56), Expect = 3.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 19 KKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
K K KK K +KN+ K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 25.8 bits (56), Expect = 4.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 29 KKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYT 62
K K K K +K KT KK KR+R+++Y
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKESYA 36
Score = 24.7 bits (53), Expect = 10.0
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKE 39
K K KK K +K K KKKK KE
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_B 2zkr_a
Length = 261
Score = 26.4 bits (59), Expect = 3.7
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKK 30
LI ++ + + + K K
Sbjct: 236 GLIAARRTGRLRGQAAATAAKADK 259
Score = 25.7 bits (57), Expect = 6.8
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 18 KKKKKKKKKKKKKKKKKNLIKEKKKKK 44
+K ++ + + + K K
Sbjct: 233 QKVGLIAARRTGRLRGQAAATAAKADK 259
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 25.9 bits (56), Expect = 3.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 19 KKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKS 53
+ K KK KK +KK KK+KK++K+S
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKES 37
Score = 25.1 bits (54), Expect = 6.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 16 KKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
+ K KK KK K K KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 26.2 bits (57), Expect = 4.0
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 102 YEQEEYNKEGIRWRHIEFSDNT 123
+ Y + GI H +D
Sbjct: 91 NLLDLYQQCGIITHHHPIADGG 112
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 26.2 bits (57), Expect = 4.0
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+ ++ K++ KK K +KK KK + K +K + K T++ +K +
Sbjct: 109 EAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKIGG 157
Score = 25.8 bits (56), Expect = 4.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
+ IKE+ KK K +KK KK + K +K ++ ++ K K +R
Sbjct: 113 REIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKIGGGGGKR 162
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 26.4 bits (59), Expect = 4.0
Identities = 5/45 (11%), Positives = 16/45 (35%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
E+ + ++ ++ K + +K+ + K +K
Sbjct: 216 EMKRYAEKTFNEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTT 260
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 26.1 bits (57), Expect = 4.5
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
K + K+K + KK+ + + K+
Sbjct: 154 AKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 26.1 bits (57), Expect = 4.6
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
+ ++K+K+K K +KKK+ + + ++ +KK K T+
Sbjct: 151 AVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEV 195
Score = 25.8 bits (56), Expect = 6.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
K K+K K +KKK+ + +K+ +KN+ K+ K + KT
Sbjct: 159 KRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKT 198
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A
{Azotobacter vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B*
1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B*
2afk_B* 2min_B* 3k1a_B* 3min_B*
Length = 523
Score = 26.2 bits (58), Expect = 4.8
Identities = 4/43 (9%), Positives = 18/43 (41%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKK 46
+ ++ +K+ ++K + K + + +E +++
Sbjct: 19 DYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREA 61
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 25.9 bits (56), Expect = 5.0
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 19 KKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
K+ +KK K+ K +K KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKVNH 41
Score = 25.1 bits (54), Expect = 8.0
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
K+ +KK K+ K K KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 26.2 bits (57), Expect = 5.1
Identities = 8/52 (15%), Positives = 22/52 (42%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
++S K+ K+ ++ ++ KK ++ + K KK +++
Sbjct: 390 QISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEK 441
Score = 25.8 bits (56), Expect = 6.8
Identities = 7/44 (15%), Positives = 22/44 (50%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
+ + +KK K+ ++ ++ N+ K+ ++ K++ K +
Sbjct: 388 RLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGK 431
Score = 25.8 bits (56), Expect = 7.7
Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKK--KNLIKEKKKKKKKKKTKKKSK 54
+K + + +KK K+ ++ ++ K ++ K++ K KK+
Sbjct: 384 NKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTS 434
Score = 25.4 bits (55), Expect = 8.3
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKK--KKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
I +KK K+ ++ ++ KK + KE+ K KKT + + +
Sbjct: 386 AARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTD 444
>2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane
channel, two double layered lipid spanning, cellular
adhesion, cell junction; 3.50A {Homo sapiens} PDB:
3iz1_A 3iz2_A
Length = 226
Score = 26.2 bits (57), Expect = 5.1
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 27 KKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICH 68
++ +KK+K + E K + K + K K R + T
Sbjct: 98 RRHEKKRKFIKGEIKSEFKDIEEIKTQKVRIEGSLWWTYTSS 139
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase
subunit A', DNA-directed...; transcription, fusion
protein, chimera protein, multiprotein; 3.30A
{Pyrococcus furiosus}
Length = 436
Score = 26.2 bits (58), Expect = 5.2
Identities = 6/46 (13%), Positives = 22/46 (47%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
E ++ ++ ++ KK + + ++ + + + + KK K++
Sbjct: 162 RECGRIKLTDEEIEEYMKKIELARNRRSEFNEIIKEIHKKAKERMV 207
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human
papillomavirus type 16} SCOP: b.121.6.1
Length = 505
Score = 26.3 bits (58), Expect = 5.3
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 30 KKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K K K + ++K T +KR++RK
Sbjct: 475 KAKPKFTLGKRKATPTTSSTSTTAKRKKRK 504
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR
{Rattus norvegicus} SCOP: b.7.1.2
Length = 142
Score = 25.4 bits (56), Expect = 5.3
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNL 36
L+ + + + + K++ K +K+L
Sbjct: 46 YLLPGRGQVMVVQNASAEYKRRTKYVQKSL 75
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 26.0 bits (58), Expect = 5.5
Identities = 3/33 (9%), Positives = 13/33 (39%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
++K+ + K+ + ++ + +T
Sbjct: 468 QRKRPGSPAAQASKRASEMACQQPTQPPDADQT 500
Score = 25.6 bits (57), Expect = 7.4
Identities = 2/23 (8%), Positives = 10/23 (43%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKK 34
++K+ + K+ + ++
Sbjct: 468 QRKRPGSPAAQASKRASEMACQQ 490
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil,
transcription/DNA complex; 6.50A {Thermus aquaticus}
SCOP: i.8.1.1
Length = 438
Score = 26.1 bits (57), Expect = 5.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
KK K KKK K ++ + K +KE + + +
Sbjct: 2 KKSKSKKKAAKAQEVEVKEPVKEPEPLPELE 32
>3mes_A Choline kinase; malaria, structural genomics, structural genomics
consortium, SGC, transferase; HET: ADP DME PT3; 2.35A
{Cryptosporidium parvum}
Length = 424
Score = 26.2 bits (56), Expect = 5.8
Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 8 LIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNIC 67
+ K + K + K+ K ++ + ++E +K ++ + +
Sbjct: 206 REEAKIQVSKNNFQIDKELYSKILEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFA 265
Query: 68 HG---------EQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEY 107
H Q + + +E IN+A + YF ++++ Y E+
Sbjct: 266 HNDLQENNLLQTQNNIRMIDYEYSAINFAGADIANYFCEYIYDYCSEKQ 314
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 156
Score = 25.6 bits (56), Expect = 6.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
K KK+ K + K K K KK ++K KKKK
Sbjct: 4 KAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKK 39
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 26.0 bits (56), Expect = 6.2
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
+ E KKK++ + K K+ +KK +++ ++K +K K K R+ T+ +
Sbjct: 34 PAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRM 93
Score = 25.6 bits (55), Expect = 6.8
Identities = 12/68 (17%), Positives = 25/68 (36%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
+ E K K+ +KK K +K ++K + K+ ++ + + + R
Sbjct: 45 RNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFY 104
Query: 67 CHGEQTLL 74
E L
Sbjct: 105 VPAEPKLA 112
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 25.7 bits (56), Expect = 6.3
Identities = 5/32 (15%), Positives = 17/32 (53%)
Query: 9 IKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEK 40
+ EK++ K +KK + +++ + +++
Sbjct: 150 VTEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 25.9 bits (55), Expect = 7.0
Identities = 17/104 (16%), Positives = 34/104 (32%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
K + K+ K+ + +K +K KK ++ KK ++K R N
Sbjct: 122 KQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPS 181
Query: 67 CHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKE 110
+ EQ E+ + +Y + +Y +
Sbjct: 182 LNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMEN 225
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea}
Length = 100
Score = 24.8 bits (55), Expect = 7.4
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 6 SKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKK 47
S + +EKK++ ++K ++ K++ +K K + K
Sbjct: 5 SLIQREKKRRNLEQKYHLIRRSSKQEIRKVTSLSDKWEIHGK 46
>2kco_A 30S ribosomal protein S8E; ribosomal protein of unknown function,
ribonucleoprotein, PSI-2, protein structure initiative;
NMR {Sulfolobus solfataricus P2}
Length = 133
Score = 25.2 bits (55), Expect = 7.7
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEK-------KKKKKKKKTKKKSKRRRRKNYTKTNIC 67
+K K K + K+K + + + K +T + + R K T N+
Sbjct: 7 PDNRKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVL 66
Query: 68 HGEQTLLTSVSFEQLCINYANEHL 91
V ++ AN+ L
Sbjct: 67 DPATNTAKKVKILEILETPANKEL 90
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 25.1 bits (54), Expect = 7.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRR 56
K ++E K+KK +KK+ +K + K K+ + KK K+ K ++
Sbjct: 109 KAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 25.3 bits (55), Expect = 8.0
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKK 44
KK+ KK K KK K + ++K + +
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSAGSP 146
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 24.6 bits (53), Expect = 8.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 22 KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
KK K K K+KKKK K K+K K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN 39
>2zfn_A RTT109, regulator of TY1 transposition protein 109; histone H3
lysine 56 acetylation, DNA damage, DNA repair, NU
transcription; HET: ALY ACO; 1.90A {Saccharomyces
cerevisiae} PDB: 2rim_A 3q33_A* 3q35_A* 3q66_C* 3q68_C*
3d35_A* 3qm0_A* 3cz7_A*
Length = 460
Score = 25.6 bits (55), Expect = 8.7
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
F L + K++ +++ + I K +KK K K
Sbjct: 410 FLLLRMATNLQSLTGKREHRERNQPVPASNINTLAITMLKPRKKAKALPK 459
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q
3u5g_Z
Length = 108
Score = 24.6 bits (53), Expect = 8.8
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 22 KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRR 57
K++ K K L KK KKK K K + +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQH 38
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY
rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP:
d.26.1.1
Length = 167
Score = 25.0 bits (55), Expect = 8.9
Identities = 3/34 (8%), Positives = 13/34 (38%)
Query: 17 KKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
+++ +K+ + +++K + K
Sbjct: 3 DAASHEERMNNYRKRVGRLFMEQKAAQPDAVKLP 36
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase,
metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Length = 188
Score = 25.2 bits (56), Expect = 9.1
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKK 32
LS L +++ ++K +K + K +
Sbjct: 146 LSPLKQQRIRQKVEKLDRLKARAPNSSS 173
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein,
chromosome segregation, DNA-binding, helix-turn-helix;
2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Length = 230
Score = 25.2 bits (56), Expect = 9.2
Identities = 2/24 (8%), Positives = 6/24 (25%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKK 27
+ L + K+ +
Sbjct: 205 QAEALRERLAMAPKRSAEGSHHHH 228
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding;
2.29A {Homo sapiens}
Length = 1128
Score = 25.5 bits (55), Expect = 9.5
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 24 KKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNICHGEQTLLTSV--SFEQ 81
+ KK KK+ KK + +++K +S R+ R T + H + L
Sbjct: 639 QAVNKKSKKQTG----KKGEPEREKPGVESMRKNRLVVTNLDKLHTALSELCFSINYVPN 694
Query: 82 LCI--------NYANEHLQYYFNQHVFQ 101
+ + Y HL+ F + +
Sbjct: 695 MVVWEHTFTPREYLTSHLEIRFTKSIVG 722
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase,
pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces
cerevisiae} PDB: 3uai_A
Length = 400
Score = 25.1 bits (55), Expect = 9.6
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 12 KKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKN 60
+KKK+ K K K + N ++ KK+ + +
Sbjct: 352 LGPVAQKKKQMKADGKLDKYGRVNENTPEQWKKEYVPLDNAEQHHHHHH 400
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 24.9 bits (54), Expect = 9.6
Identities = 9/51 (17%), Positives = 27/51 (52%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
+ + + I+E ++K+K+K K ++K+ K + ++ ++K + +
Sbjct: 150 VGWNYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEI 200
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite
ammonification; HET: HEM; 2.3A {Desulfovibrio
desulfuricans} SCOP: a.138.1.3
Length = 519
Score = 25.3 bits (54), Expect = 9.7
Identities = 4/47 (8%), Positives = 16/47 (34%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKT 49
+ +K ++ + K+ + L K ++ + + +
Sbjct: 473 IKKLVPPILTLSRKLQQDPEFLKQNPWTRLLPALPKAEQVWEGQDRA 519
>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3j16_C 3u5g_G
Length = 236
Score = 25.1 bits (54), Expect = 9.8
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
FF LSK + +++ K +K K K + L+ ++ ++K+ + K + + +
Sbjct: 144 FFGLSKEDDVRDFVIRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQ 201
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 25.6 bits (56), Expect = 9.9
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
E+S L + K++ K K++ +E++K + K++ R
Sbjct: 972 EVSLLDHDVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTHR 1023
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 25.0 bits (54), Expect = 10.0
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKR 55
++ ++ K+ K+K K+ K L+ EKK KKS
Sbjct: 97 EKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQSKKSDH 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.368
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,134,195
Number of extensions: 128338
Number of successful extensions: 7526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4255
Number of HSP's successfully gapped: 1443
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.9 bits)