RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15143
(149 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 70.9 bits (173), Expect = 9e-16
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448
Query: 138 CVLDDQ 143
+LD+
Sbjct: 449 SLLDEA 454
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 64.0 bits (155), Expect = 2e-13
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+
Sbjct: 425 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIF 484
Query: 138 CVLDDQ 143
+L+++
Sbjct: 485 SILEEE 490
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 63.6 bits (154), Expect = 3e-13
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPN 134
SFEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 397 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPP 456
Query: 135 GLLCVLDDQ 143
G+L +LD++
Sbjct: 457 GVLALLDEE 465
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 62.8 bits (152), Expect = 6e-13
Identities = 39/66 (59%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K G+L
Sbjct: 386 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVL 444
Query: 138 CVLDDQ 143
+LD++
Sbjct: 445 DLLDEE 450
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 62.0 bits (150), Expect = 1e-12
Identities = 34/66 (51%), Positives = 44/66 (66%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 137
SFEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+L
Sbjct: 423 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGIL 482
Query: 138 CVLDDQ 143
+L+++
Sbjct: 483 SILEEE 488
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 59.3 bits (143), Expect = 8e-12
Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 78 SFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNG 135
SFEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G +P G
Sbjct: 418 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 477
Query: 136 LLCVLDDQ 143
+L +LD+Q
Sbjct: 478 ILALLDEQ 485
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.9 bits (65), Expect = 0.20
Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 7 KLIKEKKKKKKKKKKKKKKK----------KKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
+++KE + K+ + + +K++KK L ++KK+ + ++ K +
Sbjct: 72 QVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.1 bits (63), Expect = 0.38
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 2 FFELSKLIKEKKKKKKKKKKKK-------KKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
FF+ + ++K K + K + + +K + KE+K K K++ K +
Sbjct: 78 FFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 26.5 bits (58), Expect = 1.4
Identities = 7/52 (13%), Positives = 24/52 (46%)
Query: 3 FELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSK 54
E KL+ E K+ + + + + + + +E + +++ K++++
Sbjct: 440 LEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTE 491
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 26.4 bits (58), Expect = 1.6
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 84 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 122
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 25.4 bits (55), Expect = 2.9
Identities = 15/107 (14%), Positives = 34/107 (31%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKT 64
+ + KK + +++ K K + +K+ +KK + K +K + +
Sbjct: 109 VELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAI 168
Query: 65 NICHGEQTLLTSVSFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 111
+ GE S ++ Q Y+ +G
Sbjct: 169 SNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKG 215
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 25.4 bits (55), Expect = 2.9
Identities = 6/43 (13%), Positives = 11/43 (25%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
E +++ + + LI KKK
Sbjct: 116 PEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKK 158
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 25.3 bits (54), Expect = 3.4
Identities = 8/48 (16%), Positives = 14/48 (29%)
Query: 4 ELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKK 51
E+ I K K K+ K +K K + + +
Sbjct: 137 EIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNENDVWE 184
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 25.2 bits (54), Expect = 3.6
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 1 MFFELSKLIKEKKKKKKKKKKKKKKKKKKKKKKKN 35
F +++ IKE ++ + +KK+ K K
Sbjct: 159 AFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKG 193
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 25.3 bits (55), Expect = 3.7
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 15 KKKKKKKKKKKKKKKKKKKKNLIKEKKKKKK 45
+ K+ +K+++ ++K ++ L KEK +K++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 24.7 bits (53), Expect = 4.2
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKKKKKK 34
L E+ K K++ + + + + +K
Sbjct: 153 ILFFERLPKPKREAFLEANRAELVRFQK 180
Score = 24.3 bits (52), Expect = 5.4
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 7 KLIKEKKKKKKKKKKKKKKKKKKK 30
+L K K++ + + + + +K+
Sbjct: 158 RLPKPKREAFLEANRAELVRFQKE 181
Score = 23.9 bits (51), Expect = 9.3
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 5 LSKLIKEKKKKKKKKKKKKKKKK 27
L K +E + + + + +K+
Sbjct: 159 LPKPKREAFLEANRAELVRFQKE 181
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 25.1 bits (54), Expect = 5.0
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 10 KEKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTK 50
E K KK +++ K+ KK + + K
Sbjct: 156 LEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEADMLSKGLLG 196
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Length = 197
Score = 24.6 bits (53), Expect = 5.2
Identities = 7/56 (12%), Positives = 17/56 (30%)
Query: 11 EKKKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRKNYTKTNI 66
++ + + KK K + + K K + + +K +I
Sbjct: 70 VEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKKTKETKHI 125
Score = 24.2 bits (52), Expect = 6.8
Identities = 4/47 (8%), Positives = 15/47 (31%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKKTKKKSKRRRRK 59
K + ++ + K ++ E+ + + K + +
Sbjct: 45 PNKDPRCQRMVDEIVKCHEEAYAAAVEEYEANPPAVARGKKPLKPYE 91
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 24.6 bits (53), Expect = 5.9
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 30 KKKKKNLIKEKKKKKKKKKTKKKSKRRRR 58
K N+ + + +K++ KT K+ + +
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEK 236
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 24.1 bits (52), Expect = 5.9
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 13 KKKKKKKKKKKKKKKKKKKKKKNLIKEKK 41
K K K K +++ K + + +K+ L+ ++
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 23.6 bits (51), Expect = 6.7
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 2 FFELSKLIKEKKKKKKKKKKKKKKKKKKKKK 32
++KE + + K+ +K++
Sbjct: 71 ILWNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 24.4 bits (52), Expect = 6.8
Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 4 ELSKLIKEKKKKKKKKKK-KKKKKKKKKKKKKNLIKEKKKKKKKKKTKKK 52
KL+K+K++K+ + + K K + ++ ++ + +
Sbjct: 710 RYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEAR 759
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 23.1 bits (50), Expect = 9.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 14 KKKKKKKKKKKKKKKKKKKKKNLIKEKKKKKKKKK 48
KK +K ++ KKK +++ + E K+K K +
Sbjct: 58 DKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIR 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.368
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 555,152
Number of extensions: 30297
Number of successful extensions: 1767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 943
Number of HSP's successfully gapped: 398
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (22.9 bits)