Query psy15147
Match_columns 100
No_of_seqs 119 out of 279
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 21:48:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00894 2A0114euk Na(+)-depe 97.2 0.00067 1.4E-08 53.6 5.0 35 55-89 14-48 (465)
2 TIGR02332 HpaX 4-hydroxyphenyl 67.2 2.9 6.3E-05 33.1 1.2 33 58-90 6-38 (412)
3 PRK09556 uhpT sugar phosphate 60.7 3.3 7.1E-05 33.2 0.4 33 58-90 27-59 (467)
4 KOG2532|consensus 50.5 4.7 0.0001 34.0 -0.3 34 55-96 18-51 (466)
5 KOG0894|consensus 39.5 47 0.001 26.9 3.8 20 54-73 219-238 (244)
6 KOG4753|consensus 38.1 65 0.0014 23.7 4.1 69 1-75 1-71 (124)
7 PF02060 ISK_Channel: Slow vol 34.1 46 0.001 24.6 2.8 19 57-75 44-62 (129)
8 COG2271 UhpC Sugar phosphate p 29.5 27 0.00059 30.4 1.1 35 56-90 25-59 (448)
9 PF13150 DUF3989: Protein of u 24.9 93 0.002 21.0 2.9 18 58-75 29-46 (85)
10 COG3090 DctM TRAP-type C4-dica 23.3 90 0.0019 23.0 2.8 27 57-83 52-78 (177)
11 COG4920 Predicted membrane pro 21.8 85 0.0018 25.4 2.5 21 58-78 34-54 (249)
12 TIGR00894 2A0114euk Na(+)-depe 20.9 6.1 0.00013 31.3 -4.1 39 55-93 4-42 (465)
13 PF11169 DUF2956: Protein of u 20.6 1E+02 0.0023 22.0 2.5 17 59-75 87-103 (103)
14 PF04290 DctQ: Tripartite ATP- 20.4 1.3E+02 0.0028 19.8 2.9 28 57-84 26-53 (133)
No 1
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.19 E-value=0.00067 Score=53.56 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhhheecceeeeecccC
Q psy15147 55 LSKRYTMATLTCVGFIISFGMKCNLGFAKLQFEGR 89 (100)
Q Consensus 55 lp~RyvlAiL~flGf~i~Y~mRvNLSVAIVaMVn~ 89 (100)
.+.||.+.+++|+++.++|..|+|+++|+++|.++
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~ 48 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNK 48 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccC
Confidence 57899999999999999999999999999999873
No 2
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=67.15 E-value=2.9 Score=33.05 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhhheecceeeeecccCC
Q psy15147 58 RYTMATLTCVGFIISFGMKCNLGFAKLQFEGRF 90 (100)
Q Consensus 58 RyvlAiL~flGf~i~Y~mRvNLSVAIVaMVn~t 90 (100)
|+.+.+++|+++++.|.-|.|++++...|.+.-
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~ 38 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDL 38 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhc
Confidence 788999999999999999999999999887654
No 3
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=60.71 E-value=3.3 Score=33.17 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhheecceeeeecccCC
Q psy15147 58 RYTMATLTCVGFIISFGMKCNLGFAKLQFEGRF 90 (100)
Q Consensus 58 RyvlAiL~flGf~i~Y~mRvNLSVAIVaMVn~t 90 (100)
+..+.+++++++++.|..|.++++++..|.+.-
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~ 59 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTY 59 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhc
Confidence 445677899999999999999999998887643
No 4
>KOG2532|consensus
Probab=50.52 E-value=4.7 Score=34.03 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhhheecceeeeecccCCCCCccc
Q psy15147 55 LSKRYTMATLTCVGFIISFGMKCNLGFAKLQFEGRFPRRQQM 96 (100)
Q Consensus 55 lp~RyvlAiL~flGf~i~Y~mRvNLSVAIVaMVn~t~~~~~~ 96 (100)
...|+.+.++ |++|.|+++++++|+|.+...++.
T Consensus 18 ~~~r~~~~~~--------~~~~~~~~~a~~~~~nft~i~~~~ 51 (466)
T KOG2532|consen 18 NKTRFLILIL--------YTLCLTLSVANVAMFNFTVICMQD 51 (466)
T ss_pred hhHHHHHHHH--------HHHHHHHHHHHHHHHhhhhccCCc
Confidence 3557666666 888888999999988877666543
No 5
>KOG0894|consensus
Probab=39.50 E-value=47 Score=26.89 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.6
Q ss_pred cccHHHHHHHHHHHHHHHHH
Q psy15147 54 CLSKRYTMATLTCVGFIISF 73 (100)
Q Consensus 54 ~lp~RyvlAiL~flGf~i~Y 73 (100)
.++.+.+++++.|+|++.+.
T Consensus 219 gl~~~~~~~~~v~~g~a~~~ 238 (244)
T KOG0894|consen 219 GLPGWALLALLVFFGFAAAL 238 (244)
T ss_pred cccchhHHHHHHHHHHHHHH
Confidence 46778899999999998764
No 6
>KOG4753|consensus
Probab=38.13 E-value=65 Score=23.72 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=35.2
Q ss_pred CCcccccccc--CChhhhhhhccCCCCCCCCcccCCCCCCCCcccCCCCCCCCCccccHHHHHHHHHHHHHHHHHhh
Q psy15147 1 MSPQQTHQYT--SPSEEIVKYASTGGLPGGPSIDIPSPERPPLRHIDKYVRPEIPCLSKRYTMATLTCVGFIISFGM 75 (100)
Q Consensus 1 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~iel~~~~rp~~~~~~~~~~~~~~~lp~RyvlAiL~flGf~i~Y~m 75 (100)
|+|..+--++ .+|++++++.|.-.-....+++ .+..+.... +..+..-+..|-+|+++++|.+.+.+.+
T Consensus 1 m~p~rdv~~~~~dss~~~~~y~~~~~s~~Dsd~~--~~~~~~~s~----tr~P~k~i~lavvL~~fg~Lli~lg~fl 71 (124)
T KOG4753|consen 1 MSPERDVGVGTRDSSRTSMAYSDHAFSISDSDIQ--IDYSYKVSN----TRHPVKEIALAVVLLVFGLLLIGLGFFL 71 (124)
T ss_pred CCCcCcCceeccCCCccchhhcccccccccccce--eecccccCC----CCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444443 3567777777755444433333 222211111 1112222456888888877777777766
No 7
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=34.13 E-value=46 Score=24.63 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy15147 57 KRYTMATLTCVGFIISFGM 75 (100)
Q Consensus 57 ~RyvlAiL~flGf~i~Y~m 75 (100)
.=|++.+|+|+||++.=.|
T Consensus 44 ~lYIL~vmgfFgff~~gIm 62 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIM 62 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHH
Confidence 3589999999999876444
No 8
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=29.49 E-value=27 Score=30.41 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhheecceeeeecccCC
Q psy15147 56 SKRYTMATLTCVGFIISFGMKCNLGFAKLQFEGRF 90 (100)
Q Consensus 56 p~RyvlAiL~flGf~i~Y~mRvNLSVAIVaMVn~t 90 (100)
..|..+-+-.|+|.+..|..|-|+++|+-+|....
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~ 59 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDG 59 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhc
Confidence 45777778899999999999999999999887654
No 9
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=24.90 E-value=93 Score=21.00 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy15147 58 RYTMATLTCVGFIISFGM 75 (100)
Q Consensus 58 RyvlAiL~flGf~i~Y~m 75 (100)
+++++++++++..+.|+.
T Consensus 29 ~vvl~ml~~fa~l~ly~~ 46 (85)
T PF13150_consen 29 RVVLVMLVLFAALCLYMT 46 (85)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666677777777765
No 10
>COG3090 DctM TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]
Probab=23.30 E-value=90 Score=23.05 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhhheecceee
Q psy15147 57 KRYTMATLTCVGFIISFGMKCNLGFAK 83 (100)
Q Consensus 57 ~RyvlAiL~flGf~i~Y~mRvNLSVAI 83 (100)
.||....|.|+|....+.-+.+++|-+
T Consensus 52 ar~lfvwl~flGa~~~~r~~~Hi~vd~ 78 (177)
T COG3090 52 ARLLFVWLIFLGAAYGVREGGHIGVDV 78 (177)
T ss_pred HHHHHHHHHHHHHHHHhccCCeeeehH
Confidence 499999999999887766666665543
No 11
>COG4920 Predicted membrane protein [Function unknown]
Probab=21.79 E-value=85 Score=25.44 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhhee
Q psy15147 58 RYTMATLTCVGFIISFGMKCN 78 (100)
Q Consensus 58 RyvlAiL~flGf~i~Y~mRvN 78 (100)
=+++-++.|+|+.++-++|.|
T Consensus 34 f~ilyilf~~glsiVm~~RSn 54 (249)
T COG4920 34 FLILYILFFFGLSIVMGLRSN 54 (249)
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 357778899999999999997
No 12
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=20.93 E-value=6.1 Score=31.27 Aligned_cols=39 Identities=8% Similarity=-0.118 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhhheecceeeeecccCCCCC
Q psy15147 55 LSKRYTMATLTCVGFIISFGMKCNLGFAKLQFEGRFPRR 93 (100)
Q Consensus 55 lp~RyvlAiL~flGf~i~Y~mRvNLSVAIVaMVn~t~~~ 93 (100)
++.||.+..|....+.+.+.+++++.++.+.++|-+...
T Consensus 4 ~~~~~~~~~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~ 42 (465)
T TIGR00894 4 VFASTKLPYFCSFRLFLSFLLHICNVIIIAQRICLSLTM 42 (465)
T ss_pred ccCCCCCCcccCcHHHHHHHHHHHHHHHHHHHhhheEEE
Confidence 467999999999999999999999999988888754443
No 13
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.56 E-value=1e+02 Score=21.98 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy15147 59 YTMATLTCVGFIISFGM 75 (100)
Q Consensus 59 yvlAiL~flGf~i~Y~m 75 (100)
++|.+|+++||++-++|
T Consensus 87 W~LL~lSW~gF~~Y~~~ 103 (103)
T PF11169_consen 87 WGLLVLSWIGFIAYIFM 103 (103)
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 56888888998876654
No 14
>PF04290 DctQ: Tripartite ATP-independent periplasmic transporters, DctQ component; InterPro: IPR007387 The function of the members of this family is unknown, but DctQ homologues are invariably found in the tripartite ATP-independent periplasmic transporters [].
Probab=20.35 E-value=1.3e+02 Score=19.84 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhhheecceeee
Q psy15147 57 KRYTMATLTCVGFIISFGMKCNLGFAKL 84 (100)
Q Consensus 57 ~RyvlAiL~flGf~i~Y~mRvNLSVAIV 84 (100)
.||.+..+.|+|....+.-+-+++|-++
T Consensus 26 ~~~l~~~~~~lg~~~~~~~~~Hi~vd~l 53 (133)
T PF04290_consen 26 ARYLFVWMIFLGAAYAVRRGGHIRVDLL 53 (133)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEehh
Confidence 5999999999999998888888887765
Done!