Query psy15147
Match_columns 100
No_of_seqs 119 out of 279
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 21:48:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2klu_A T-cell surface glycopro 45.7 16 0.00054 23.6 2.7 18 60-77 17-34 (70)
2 2k21_A Potassium voltage-gated 28.2 42 0.0014 24.1 2.8 19 57-75 53-71 (138)
3 2l0l_A Oxidoreductase THAT cat 15.6 18 0.00063 18.8 -1.0 14 52-65 2-15 (27)
4 2ww9_B Protein transport prote 14.3 90 0.0031 20.2 1.9 12 60-71 57-68 (80)
5 1rh5_B Preprotein translocase 14.3 99 0.0034 19.6 2.1 14 60-73 44-57 (74)
6 2wwb_B SEC61gamma, protein tra 13.3 1E+02 0.0035 19.2 1.9 13 60-72 43-55 (68)
7 3mp7_B Preprotein translocase 10.2 1.5E+02 0.0052 18.0 1.9 14 60-73 40-53 (61)
8 2lx0_A Membrane fusion protein 9.0 1.8E+02 0.0063 15.7 1.7 11 60-70 12-22 (32)
9 2vof_A BCL-2-related protein A 8.2 2.6E+02 0.0089 19.1 2.7 22 58-80 93-114 (157)
10 2ims_A Apoptosis regulator BAK 7.7 2.7E+02 0.0091 19.3 2.6 21 60-80 113-133 (171)
No 1
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=45.70 E-value=16 Score=23.58 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhhe
Q psy15147 60 TMATLTCVGFIISFGMKC 77 (100)
Q Consensus 60 vlAiL~flGf~i~Y~mRv 77 (100)
+..+++|.|++|.+.+|+
T Consensus 17 ~~~lll~~glcI~ccvkc 34 (70)
T 2klu_A 17 VAGLLLFIGLGIFFSVRS 34 (70)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhHH
Confidence 567788999999988865
No 2
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=28.17 E-value=42 Score=24.07 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy15147 57 KRYTMATLTCVGFIISFGM 75 (100)
Q Consensus 57 ~RyvlAiL~flGf~i~Y~m 75 (100)
.=|++.+|.|+||++.=.|
T Consensus 53 ylYIL~vmgffgff~~GIm 71 (138)
T 2k21_A 53 ALYVLMVLGFFGFFTLGIM 71 (138)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHH
Confidence 3589999999999876443
No 3
>2l0l_A Oxidoreductase THAT catalyzes reoxidation of DSBA disulfide isomerase I; DSBB, membrane protein, organic solvent, folding; NMR {Escherichia coli BW2952} PDB: 2l0m_A
Probab=15.63 E-value=18 Score=18.80 Aligned_cols=14 Identities=7% Similarity=0.047 Sum_probs=9.4
Q ss_pred CccccHHHHHHHHH
Q psy15147 52 IPCLSKRYTMATLT 65 (100)
Q Consensus 52 ~~~lp~RyvlAiL~ 65 (100)
..|+-+|+.+..+.
T Consensus 2 pLCI~QR~a~~~i~ 15 (27)
T 2l0l_A 2 KLSIYERVALFGVL 15 (27)
T ss_dssp CCSSSSHHHHHHHS
T ss_pred CchHHHHHHHHHHH
Confidence 45788997666543
No 4
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=14.33 E-value=90 Score=20.19 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q psy15147 60 TMATLTCVGFII 71 (100)
Q Consensus 60 vlAiL~flGf~i 71 (100)
.+++|+|+||++
T Consensus 57 G~~imG~IGfiI 68 (80)
T 2ww9_B 57 GFIAVGIIGYAI 68 (80)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566778888874
No 5
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=14.28 E-value=99 Score=19.58 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q psy15147 60 TMATLTCVGFIISF 73 (100)
Q Consensus 60 vlAiL~flGf~i~Y 73 (100)
.+++|+++||++-.
T Consensus 44 G~~imG~IGfiIkl 57 (74)
T 1rh5_B 44 GISLLGIIGYIIHV 57 (74)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46677777777643
No 6
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=13.27 E-value=1e+02 Score=19.20 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q psy15147 60 TMATLTCVGFIIS 72 (100)
Q Consensus 60 vlAiL~flGf~i~ 72 (100)
.+++|.++||++-
T Consensus 43 G~~i~G~IGf~Ik 55 (68)
T 2wwb_B 43 GFAIMGFIGFFVK 55 (68)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5778889998853
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=10.23 E-value=1.5e+02 Score=17.97 Aligned_cols=14 Identities=14% Similarity=0.439 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q psy15147 60 TMATLTCVGFIISF 73 (100)
Q Consensus 60 vlAiL~flGf~i~Y 73 (100)
.+++|.++||++-.
T Consensus 40 G~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 40 GIILIGLIGMLIRI 53 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45667777777643
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=9.00 E-value=1.8e+02 Score=15.73 Aligned_cols=11 Identities=36% Similarity=0.362 Sum_probs=6.8
Q ss_pred HHHHHHHHHHH
Q psy15147 60 TMATLTCVGFI 70 (100)
Q Consensus 60 vlAiL~flGf~ 70 (100)
.+|+|.|++|.
T Consensus 12 lvalltflafg 22 (32)
T 2lx0_A 12 LVALLTFLAFG 22 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46667666654
No 9
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=8.18 E-value=2.6e+02 Score=19.08 Aligned_cols=22 Identities=9% Similarity=0.153 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhheecc
Q psy15147 58 RYTMATLTCVGFIISFGMKCNLG 80 (100)
Q Consensus 58 RyvlAiL~flGf~i~Y~mRvNLS 80 (100)
| +++++.|.|.++.+..+-++.
T Consensus 93 R-IVal~~F~g~la~~~~~~~~~ 114 (157)
T 2vof_A 93 R-IVTIFAFGGVLLKKLKQEQIA 114 (157)
T ss_dssp H-HHHHHHHHHHHHHHHHHC---
T ss_pred H-HHHHHHHHHHHHHHHHHhCCc
Confidence 5 999999999999999987664
No 10
>2ims_A Apoptosis regulator BAK; dimer; 1.48A {Homo sapiens} PDB: 2imt_A 2jcn_A 2yv6_A 3qbr_B* 2xpx_B 2jby_B 2voh_B*
Probab=7.68 E-value=2.7e+02 Score=19.26 Aligned_cols=21 Identities=14% Similarity=-0.091 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhheecc
Q psy15147 60 TMATLTCVGFIISFGMKCNLG 80 (100)
Q Consensus 60 vlAiL~flGf~i~Y~mRvNLS 80 (100)
+++++.|.|.++.+..+-++.
T Consensus 113 IVal~~F~g~la~~~~~~~~~ 133 (171)
T 2ims_A 113 VVALLGFGYRLALHVYQHGLT 133 (171)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCh
Confidence 999999999999999887654
Done!