Query psy15147
Match_columns 100
No_of_seqs 119 out of 279
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 21:49:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15147.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15147hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 76.4 0.38 2.8E-05 32.9 1.0 33 56-88 21-53 (447)
2 d1sfka_ a.190.1.1 (A:) Flavivi 35.8 11 0.00078 23.0 2.2 15 56-70 19-33 (73)
3 d1r6ra_ a.190.1.1 (A:) Flavivi 22.0 23 0.0017 21.6 2.0 15 56-70 23-37 (80)
4 d1rh5b_ f.23.28.1 (B:) Preprot 14.6 43 0.0032 19.0 1.9 14 59-72 32-45 (56)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 9.3 1.1E+02 0.008 15.3 2.2 13 59-71 8-20 (32)
6 d1rzhh2 f.23.10.1 (H:11-35) Ph 9.3 1.2E+02 0.0087 14.7 2.3 15 64-78 11-25 (26)
7 d1m56d_ f.23.8.1 (D:) Bacteria 9.1 60 0.0044 17.5 1.2 12 56-67 23-34 (42)
8 d2jm6b1 f.1.4.1 (B:147-308) EA 7.9 1.2E+02 0.0085 19.3 2.5 21 60-80 99-119 (162)
9 d1q90a3 f.23.23.1 (A:248-292) 7.6 1.4E+02 0.01 16.1 2.4 15 56-71 2-16 (45)
10 d1oede_ f.36.1.1 (E:) Acetylch 7.5 31 0.0022 22.8 -0.7 24 59-82 13-39 (260)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=76.43 E-value=0.38 Score=32.95 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhheecceeeeeccc
Q psy15147 56 SKRYTMATLTCVGFIISFGMKCNLGFAKLQFEG 88 (100)
Q Consensus 56 p~RyvlAiL~flGf~i~Y~mRvNLSVAIVaMVn 88 (100)
..|+.+.+++|+++++.|..|.++++++..|.+
T Consensus 21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~ 53 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE 53 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888899999999999999999998877764
No 2
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=35.77 E-value=11 Score=23.00 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHHH
Q psy15147 56 SKRYTMATLTCVGFI 70 (100)
Q Consensus 56 p~RyvlAiL~flGf~ 70 (100)
|.|.++|+|.|+=|.
T Consensus 19 P~R~vLA~laFfRFt 33 (73)
T d1sfka_ 19 PTRFVLALLAFFRFT 33 (73)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHH
Confidence 779999999999875
No 3
>d1r6ra_ a.190.1.1 (A:) Flavivirus capsid protein C {Dengue virus type 2 [TaxId: 11060]}
Probab=22.01 E-value=23 Score=21.60 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHHHHH
Q psy15147 56 SKRYTMATLTCVGFI 70 (100)
Q Consensus 56 p~RyvlAiL~flGf~ 70 (100)
|.|.++|+|.|+=|.
T Consensus 23 p~R~vlA~l~f~rFt 37 (80)
T d1r6ra_ 23 PLKLFMALVAFLRFL 37 (80)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 779999999888774
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=14.60 E-value=43 Score=19.02 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHH
Q psy15147 59 YTMATLTCVGFIIS 72 (100)
Q Consensus 59 yvlAiL~flGf~i~ 72 (100)
..+++|.|+||++-
T Consensus 32 iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 32 LGISLLGIIGYIIH 45 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35677788888764
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.31 E-value=1.1e+02 Score=15.30 Aligned_cols=13 Identities=15% Similarity=0.324 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q psy15147 59 YTMATLTCVGFII 71 (100)
Q Consensus 59 yvlAiL~flGf~i 71 (100)
|++.+-+|+|+.+
T Consensus 8 yivfialffgiav 20 (32)
T d2e74e1 8 YIVFIALFFGIAV 20 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5566667777654
No 6
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.29 E-value=1.2e+02 Score=14.65 Aligned_cols=15 Identities=13% Similarity=0.013 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhee
Q psy15147 64 LTCVGFIISFGMKCN 78 (100)
Q Consensus 64 L~flGf~i~Y~mRvN 78 (100)
-.|++..+-|.+|-|
T Consensus 11 w~ffalli~ylqten 25 (26)
T d1rzhh2 11 WIFLAGLIYYLQTEN 25 (26)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccc
Confidence 367778888888765
No 7
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.10 E-value=60 Score=17.51 Aligned_cols=12 Identities=0% Similarity=0.050 Sum_probs=5.6
Q ss_pred cHHHHHHHHHHH
Q psy15147 56 SKRYTMATLTCV 67 (100)
Q Consensus 56 p~RyvlAiL~fl 67 (100)
..|..++++.++
T Consensus 23 ~t~~~i~~i~~l 34 (42)
T d1m56d_ 23 VTWAAVVIVAAL 34 (42)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445554444433
No 8
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.92 E-value=1.2e+02 Score=19.25 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhheecc
Q psy15147 60 TMATLTCVGFIISFGMKCNLG 80 (100)
Q Consensus 60 vlAiL~flGf~i~Y~mRvNLS 80 (100)
+++++.|.|.++.+..+-+..
T Consensus 99 Ival~~F~~~la~~~~~~~~~ 119 (162)
T d2jm6b1 99 IVTLISFGAFVAKHLKSVNQE 119 (162)
T ss_dssp HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCh
Confidence 899999999999998877653
No 9
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.58 E-value=1.4e+02 Score=16.12 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=8.5
Q ss_pred cHHHHHHHHHHHHHHH
Q psy15147 56 SKRYTMATLTCVGFII 71 (100)
Q Consensus 56 p~RyvlAiL~flGf~i 71 (100)
|.| +..++.|++.++
T Consensus 2 P~R-v~gll~F~~~v~ 16 (45)
T d1q90a3 2 PAR-IQGLLVFFSFVL 16 (45)
T ss_dssp HHH-HHHHHHHHHHHH
T ss_pred cHH-HHHHHHHHHHHH
Confidence 345 566666666544
No 10
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.48 E-value=31 Score=22.78 Aligned_cols=24 Identities=21% Similarity=0.549 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHH---hhheeccee
Q psy15147 59 YTMATLTCVGFIISF---GMKCNLGFA 82 (100)
Q Consensus 59 yvlAiL~flGf~i~Y---~mRvNLSVA 82 (100)
.+|++|.++||.+-- +-|+.|||.
T Consensus 13 ~li~~ls~~~F~lp~~~~g~Rv~l~it 39 (260)
T d1oede_ 13 VLISSLVVLVYFLPAQAGGQKCTLSIS 39 (260)
T ss_dssp HHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHheEecCCCCCCcEEeehh
Confidence 466677777777643 356666664
Done!