RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15147
         (100 letters)



>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis,
           A/B(TIM)-barrel, site directed mutagenesis; HET: CBS;
           1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3
           c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
          Length = 858

 Score = 25.4 bits (55), Expect = 4.1
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 15  EIVKYASTGGLPGGPSIDIPSPERPPLRHIDKYVRPEIPCLSKRY 59
           +I+KYA    +   P ID+P+  R  +  ++     ++    K  
Sbjct: 404 DIIKYAQARQIEVIPEIDMPAHARAAVVSME-ARYKKLHAAGKEQ 447


>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
           HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
           3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
          Length = 329

 Score = 24.2 bits (52), Expect = 9.5
 Identities = 6/39 (15%), Positives = 12/39 (30%)

Query: 6   THQYTSPSEEIVKYASTGGLPGGPSIDIPSPERPPLRHI 44
                    + V     G      +  +   +RPP++ I
Sbjct: 288 IPDSGVGLTQFVADGPEGQSYTQHTWPVSLADRPPMQAI 326


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,541,824
Number of extensions: 80989
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 6
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)