RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15147
         (100 letters)



>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40,
           Sv40 [TaxId: 10633]}
          Length = 348

 Score = 25.2 bits (55), Expect = 1.8
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 9/47 (19%)

Query: 1   MSPQQTHQYTSPSEEIVKYASTGGLPGGPSIDIPSPERPPLRHIDKY 47
           +  Q     +S  EE+  Y  T  LPG P +         +R+ID++
Sbjct: 303 VDGQPMIGMSSQVEEVRVYEDTEELPGDPDM---------IRYIDEF 340


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 385,160
Number of extensions: 16739
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)