BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15151
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 608 bits (1568), Expect = e-174, Method: Compositional matrix adjust.
Identities = 293/433 (67%), Positives = 363/433 (83%), Gaps = 8/433 (1%)
Query: 7 ATLE--DSSIWEGEESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEK 64
ATLE D+ G++ L +IL +ST ++ +R +LLDNEI+I +SE+ R+SHE EK
Sbjct: 2 ATLEELDAQTLPGDDELDQEILNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEK 61
Query: 65 IRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEED------GAVVDLDAQRKGKCAVIKT 118
I++N EKIK N+ LPYLV+NV+E++D++ + +E+ G V+LD GK AV+KT
Sbjct: 62 IKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKT 121
Query: 119 STRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYS 178
S+RQT FLP++GLVD +KLKP DLVGVNKDSYLIL+TLP+E+D+RVKAMEVDE+PTE YS
Sbjct: 122 SSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYS 181
Query: 179 DIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS 238
D+GGLDKQI+EL+EA+VLPM +KF ++GI+ PKG L+YGPPGTGKTLLARACAAQT +
Sbjct: 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA 241
Query: 239 TFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREV 298
TFLKLA PQLVQM+IG+GAKLVRDAFALAKEKAP IIFIDELDAIGTKRFDSEK+GDREV
Sbjct: 242 TFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREV 301
Query: 299 QRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIM 358
QRTMLELLNQLDGFSS +KV+AATNRVD+LDPALLRSGRLDRKIEFP P+E++RA+I+
Sbjct: 302 QRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQIL 361
Query: 359 QIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIME 418
QIHSRKM D+N++EL+RSTD+FNGAQ KAV VEAGMIALR G + V HEDF++ I E
Sbjct: 362 QIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISE 421
Query: 419 VQAKKKANLNYYA 431
VQA+K ++++YA
Sbjct: 422 VQARKSKSVSFYA 434
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 160/310 (51%), Positives = 219/310 (70%)
Query: 114 AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERP 173
A++ + T Y++ ++ VD E L+PG V ++ + I+ L + D V M++D+ P
Sbjct: 118 AIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSP 177
Query: 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACA 233
TE YSDIGGL+ QIQE+ E+V LP+TH E + +GI+PPKGV+LYG PGTGKTLLA+A A
Sbjct: 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVA 237
Query: 234 AQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKA 293
QT +TFL++ G +L+Q ++GDG +L R F +A E AP+I+FIDE+DAIGTKR+DS
Sbjct: 238 NQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG 297
Query: 294 GDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 353
G+RE+QRTMLELLNQLDGF D+KVI ATN+++ LDPAL+R GR+DRKI F +P+
Sbjct: 298 GEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLST 357
Query: 354 RARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413
+ +I+ IH+ KMN+S DVN E L + DD +GA +A+C EAG++ALR VT EDF
Sbjct: 358 KKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFK 417
Query: 414 DAIMEVQAKK 423
A V K
Sbjct: 418 QAKERVMKNK 427
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 318 bits (815), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 150/257 (58%), Positives = 198/257 (77%)
Query: 163 RVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPG 222
R KAMEVDERP +Y DIGGL+KQ+QE+ E V LP+ H E F +GI+PPKG+LLYGPPG
Sbjct: 2 RAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPG 61
Query: 223 TGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDA 282
TGKTLLA+A A +T +TF+++ G +LV+ FIG+GA LV+D F LAKEKAP+IIFIDE+DA
Sbjct: 62 TGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDA 121
Query: 283 IGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDR 342
I KR D+ GDREVQRT+++LL ++DGF + D+K+I ATNR DILDPA+LR GR DR
Sbjct: 122 IAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDR 181
Query: 343 KIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402
IE P P+E+ R I++IH+RKMN++ DVN EE+++ T+ GA+ KA+C EAGM A+R
Sbjct: 182 IIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241
Query: 403 GAAIVTHEDFMDAIMEV 419
VT +DF A+ ++
Sbjct: 242 LRDYVTMDDFRKAVEKI 258
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 312 bits (799), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 156/325 (48%), Positives = 219/325 (67%), Gaps = 3/325 (0%)
Query: 100 GAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAE 159
G V+ + + +K ++K Y + V ++ + LK V + DSY++ + L +
Sbjct: 73 GEVIKIVSDKK---VLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENK 129
Query: 160 YDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYG 219
D V M V++ P Y +GGL KQI+E+ E + LP+ H E F +LGI PKGV+LYG
Sbjct: 130 ADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYG 189
Query: 220 PPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDE 279
PPGTGKTLLARA A T F++++G +LVQ +IG+G+++VR+ F +A+E AP+IIF+DE
Sbjct: 190 PPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDE 249
Query: 280 LDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGR 339
+D+IG+ R + GD EVQRTMLELLNQLDGF ++ +IK+I ATNR+DILDPALLR GR
Sbjct: 250 IDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGR 309
Query: 340 LDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399
+DRKIEFP P+ ARA I++IHSRKMN++ +N +++ + +GA K VC EAGM A
Sbjct: 310 IDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYA 369
Query: 400 LRRGAAIVTHEDFMDAIMEVQAKKK 424
LR VT EDF A+ +V K +
Sbjct: 370 LRERRIHVTQEDFELAVGKVMNKNQ 394
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 297 bits (760), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 147/297 (49%), Positives = 200/297 (67%), Gaps = 7/297 (2%)
Query: 128 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGG 182
V+GL E++ P D+ VGV++ Y I LP D V M V+E+P YSD+GG
Sbjct: 156 VVGL--GERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGG 213
Query: 183 LDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLK 242
QI++L E V LP+ E+F LGI PPKG+LLYGPPGTGKTL ARA A +T +TF++
Sbjct: 214 CKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273
Query: 243 LAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTM 302
+ G +LVQ ++G+GA++VR+ F +A+ K IIF DE+DA+G RFD GD EVQRTM
Sbjct: 274 VIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTM 333
Query: 303 LELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHS 362
LEL+ QLDGF +IKV+ ATNR + LDPALLR GR+DRK+EF P+ E RA I +IHS
Sbjct: 334 LELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS 393
Query: 363 RKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEV 419
+ M+V + +E +SR + GA+ ++VC EAGM A+R + T +DF+ A+ +V
Sbjct: 394 KSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 285 bits (728), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 235/385 (61%), Gaps = 21/385 (5%)
Query: 32 DINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV 91
DI + + L+ E +++ + I E + +++ E++K +++P ++ +E +D
Sbjct: 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPID- 104
Query: 92 DPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYL 151
Q+T ++ ++T +Y + ++ +D E LKP V +++ S
Sbjct: 105 --QNT-----------------GIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNA 145
Query: 152 ILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQP 211
+++ LP + D+ + M +E+P Y+D+GGLD Q QE+ EAV LP+ + + +GI P
Sbjct: 146 LVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDP 205
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 271
P+GVLLYGPPGTGKT+L +A A TK+ F+++ G + V ++G+G ++VRD F LA+E A
Sbjct: 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENA 265
Query: 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331
P+IIFIDE+D+I TKRFD++ DREVQR ++ELL Q+DGF + ++KVI ATNR D LD
Sbjct: 266 PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325
Query: 332 PALLRSGRLDRKIEFPHPNEEARAR-IMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKA 390
PALLR GRLDRKIEFP + R I + KM+++P+ + + L D +GA A
Sbjct: 326 PALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAA 385
Query: 391 VCVEAGMIALRRGAAIVTHEDFMDA 415
+ EAG+ A+R+ ++ D +A
Sbjct: 386 IMQEAGLRAVRKNRYVILQSDLEEA 410
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 268 bits (684), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 139/310 (44%), Positives = 192/310 (61%)
Query: 115 VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPT 174
++K S+ Y + V VD KLK G V ++ + I+ LP E D V M E+
Sbjct: 118 IVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGE 177
Query: 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAA 234
+ IGGL +QI+EL E + LP+ + E F +GI+PPKGVLLYGPPGTGKTLLA+A AA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 235 QTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAG 294
+ F+ +V +IG+ A+++R+ FA AKE P IIF+DE+DAIG +RF +
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA 297
Query: 295 DREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEAR 354
DRE+QRT++ELL Q+DGF + K+I ATNR D LDPALLR GRLDRK+E P PNE R
Sbjct: 298 DREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGR 357
Query: 355 ARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMD 414
I +IH+ K+ + + ++E + +D FNGA + EAG A+R + +D M
Sbjct: 358 LEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMK 417
Query: 415 AIMEVQAKKK 424
A+ +V KK
Sbjct: 418 AVRKVAEVKK 427
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 154/245 (62%), Gaps = 1/245 (0%)
Query: 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236
+ D+GG ++ I+EL E V + KF +G + PKG+LL GPPGTGKTLLARA A +
Sbjct: 15 FKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73
Query: 237 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 296
F ++G V++F+G GA VRD FA AK AP I+FIDE+DA+G R G
Sbjct: 74 NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHD 133
Query: 297 EVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 356
E ++T+ +LL ++DGF S I V+AATNR DILDPALLR GR D+KI P+ R +
Sbjct: 134 EREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKK 193
Query: 357 IMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416
I++IH+R ++ DVN E +++ T F GA + + EA ++A R G +T +DF +AI
Sbjct: 194 ILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAI 253
Query: 417 MEVQA 421
V A
Sbjct: 254 DRVIA 258
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 204 bits (520), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 110/245 (44%), Positives = 153/245 (62%), Gaps = 1/245 (0%)
Query: 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236
+ D+GG ++ I+EL E V + KF +G + PKG+LL GPPGTG TLLARA A +
Sbjct: 15 FKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEA 73
Query: 237 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 296
F ++G V++F+G GA VRD FA AK AP I+FIDE+DA+G R G
Sbjct: 74 NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHD 133
Query: 297 EVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 356
E ++T+ +LL ++DGF S I V+AATNR DILDPALLR GR D+KI P+ R +
Sbjct: 134 EREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKK 193
Query: 357 IMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416
I++IH+R ++ DVN E +++ T F GA + + EA ++A R G +T +DF +AI
Sbjct: 194 ILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAI 253
Query: 417 MEVQA 421
V A
Sbjct: 254 DRVIA 258
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 198 bits (503), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 148/235 (62%), Gaps = 3/235 (1%)
Query: 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236
Y DIGG KQ+ ++ E V LP+ H F +G++PP+G+LLYGPPGTGKTL+ARA A +T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 237 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 296
+ F + GP+++ G+ +R AF A++ APAIIFIDELDAI KR EK
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGE 319
Query: 297 EVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 356
+R + +LL +DG A + V+AATNR + +DPAL R GR DR+++ P+ R
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 357 IMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411
I+QIH++ M ++ DV+ E+++ T GA A+C EA + A+R+ ++ ED
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 197 bits (502), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 148/235 (62%), Gaps = 3/235 (1%)
Query: 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236
Y DIGG KQ+ ++ E V LP+ H F +G++PP+G+LLYGPPGTGKTL+ARA A +T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 237 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 296
+ F + GP+++ G+ +R AF A++ APAIIFIDELDAI KR EK
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGE 319
Query: 297 EVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 356
+R + +LL +DG A + V+AATNR + +DPAL R GR DR+++ P+ R
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 357 IMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411
I+QIH++ M ++ DV+ E+++ T GA A+C EA + A+R+ ++ ED
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 146/231 (63%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
V E P + DIGGL+ +EL E V P+ H +KF+ G+ P KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 229 ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
A+A A + ++ F+ + GP+L+ M+ G+ VR+ F A++ AP ++F DELD+I R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPH 348
+ G R + ++L ++DG S+ ++ +I ATNR DI+DPA+LR GRLD+ I P
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 349 PNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399
P+E++R I++ + RK V+ DV+ E L++ T+ F+GA +C A +A
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 197 bits (502), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 148/235 (62%), Gaps = 3/235 (1%)
Query: 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236
Y DIGG KQ+ ++ E V LP+ H F +G++PP+G+LLYGPPGTGKTL+ARA A +T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 237 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 296
+ F + GP+++ G+ +R AF A++ APAIIFIDELDAI KR EK
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGE 319
Query: 297 EVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 356
+R + +LL +DG A + V+AATNR + +DPAL R GR DR+++ P+ R
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 357 IMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411
I+QIH++ M ++ DV+ E+++ T GA A+C EA + A+R+ ++ ED
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 197 bits (502), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 148/235 (62%), Gaps = 3/235 (1%)
Query: 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236
Y DIGG KQ+ ++ E V LP+ H F +G++PP+G+LLYGPPGTGKTL+ARA A +T
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 237 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 296
+ F + GP+++ G+ +R AF A++ APAIIFIDELDAI KR EK
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGE 319
Query: 297 EVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 356
+R + +LL +DG A + V+AATNR + +DPAL R GR DR+++ P+ R
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 357 IMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411
I+QIH++ M ++ DV+ E+++ T GA A+C EA + A+R+ ++ ED
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 197 bits (501), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 148/235 (62%), Gaps = 3/235 (1%)
Query: 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236
Y D+GG KQ+ ++ E V LP+ H F +G++PP+G+LLYGPPGTGKTL+ARA A +T
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 237 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 296
+ F + GP+++ G+ +R AF A++ APAIIFIDELDAI KR EK
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGE 319
Query: 297 EVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 356
+R + +LL +DG A + V+AATNR + +DPAL R GR DR+++ P+ R
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 357 IMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411
I+QIH++ M ++ DV+ E+++ T GA A+C EA + A+R+ ++ ED
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 148/235 (62%), Gaps = 3/235 (1%)
Query: 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236
Y D+GG KQ+ ++ E V LP+ H F +G++PP+G+LLYGPPGTGKTL+ARA A +T
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 237 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 296
+ F + GP+++ G+ +R AF A++ APAIIFIDELDAI KR EK
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGE 319
Query: 297 EVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 356
+R + +LL +DG A + V+AATNR + +DPAL R GR DR+++ P+ R
Sbjct: 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 357 IMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411
I+QIH++ M ++ DV+ E+++ T GA A+C EA + A+R+ ++ ED
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 146/231 (63%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
V E P + DIGGL+ +EL E V P+ H +KF+ G+ P KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 229 ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
A+A A + ++ F+ + GP+L+ M+ G+ VR+ F A++ AP ++F DELD+I R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPH 348
+ G R + ++L ++DG S+ ++ +I ATNR DI+DPA+LR GRLD+ I P
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 349 PNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399
P+E++R I++ + RK V+ DV+ E L++ T+ F+GA +C A +A
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 149/239 (62%), Gaps = 1/239 (0%)
Query: 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236
++D+ G D+ +E+ E V + +F LG + PKGVL+ GPPGTGKTLLA+A A +
Sbjct: 11 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 237 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 296
K F ++G V+MF+G GA VRD F AK+ AP IIFIDE+DA+G +R G
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 297 EVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 356
E ++T+ ++L ++DGF I VIAATNR D+LDPALLR GR DR++ P+ R +
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 357 IMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDA 415
I+++H R++ ++PD++ ++R T F+GA + EA + A R +V+ +F A
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKA 248
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 146/231 (63%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
V E P + DIGGL+ +EL E V P+ H +KF+ G+ P KGVL YGPPG GKTLL
Sbjct: 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65
Query: 229 ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
A+A A + ++ F+ + GP+L+ M+ G+ VR+ F A++ AP ++F DELD+I R
Sbjct: 66 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 125
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPH 348
+ G R + ++L ++DG S+ ++ +I ATNR DI+DPA+LR GRLD+ I P
Sbjct: 126 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 185
Query: 349 PNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399
P+E++R I++ + RK V+ DV+ E L++ T+ F+GA +C A +A
Sbjct: 186 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 156/248 (62%), Gaps = 3/248 (1%)
Query: 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLAR 230
E+P ++ D+ G ++ +E++E V + + E++ NLG + PKGVLL GPPGTGKTLLA+
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 231 ACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR-FD 289
A A + F + G ++MF+G GA VRD F AK++AP+IIFIDE+DAIG R
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 290 SEKAGDREVQRTMLELLNQLDGFSS-TADIKVIAATNRVDILDPALLRSGRLDRKIEFPH 348
+G+ E ++T+ +LL ++DGF S A + V+AATNR +ILDPAL+R GR DR++
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 349 PNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVT 408
P+ R I+++H + + ++ DVN +E+++ T GA + EA ++A R V
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242
Query: 409 HEDFMDAI 416
+ +A+
Sbjct: 243 QQHLKEAV 250
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 160/267 (59%), Gaps = 4/267 (1%)
Query: 165 KAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTG 224
+A + E P + D+ G ++ +EL E V + + +F +G + PKGVLL GPPG G
Sbjct: 18 RARVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVG 76
Query: 225 KTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIG 284
KT LARA A + + F+ +G V+MF+G GA VRD F AK AP I+FIDE+DA+G
Sbjct: 77 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 136
Query: 285 TKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKI 344
KR G+ E ++T+ +LL ++DGF I V+AATNR DILDPALLR GR DR+I
Sbjct: 137 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 196
Query: 345 EFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA 404
P+ + R +I++IH+R ++ DV+ L++ T F GA + + EA ++A R G
Sbjct: 197 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 256
Query: 405 AIVTHEDF---MDAIMEVQAKKKANLN 428
+T +D D +M + AKK L+
Sbjct: 257 RKITMKDLEEAADRVMMLPAKKSLVLS 283
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 160/267 (59%), Gaps = 4/267 (1%)
Query: 165 KAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTG 224
+A + E P + D+ G ++ +EL E V + + +F +G + PKGVLL GPPG G
Sbjct: 27 RARVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVG 85
Query: 225 KTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIG 284
KT LARA A + + F+ +G V+MF+G GA VRD F AK AP I+FIDE+DA+G
Sbjct: 86 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 145
Query: 285 TKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKI 344
KR G+ E ++T+ +LL ++DGF I V+AATNR DILDPALLR GR DR+I
Sbjct: 146 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 205
Query: 345 EFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA 404
P+ + R +I++IH+R ++ DV+ L++ T F GA + + EA ++A R G
Sbjct: 206 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 265
Query: 405 AIVTHEDF---MDAIMEVQAKKKANLN 428
+T +D D +M + AKK L+
Sbjct: 266 RKITMKDLEEAADRVMMLPAKKSLVLS 292
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 153/251 (60%), Gaps = 1/251 (0%)
Query: 165 KAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTG 224
+A + E P + D+ G ++ +EL E V + + +F +G + PKGVLL GPPG G
Sbjct: 27 RARVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVG 85
Query: 225 KTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIG 284
KT LARA A + + F+ +G V+MF+G GA VRD F AK AP I+FIDE+DA+G
Sbjct: 86 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 145
Query: 285 TKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKI 344
KR G+ E ++T+ +LL ++DGF I V+AATNR DILDPALLR GR DR+I
Sbjct: 146 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 205
Query: 345 EFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA 404
P+ + R +I++IH+R ++ DV+ L++ T F GA + + EA ++A R G
Sbjct: 206 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 265
Query: 405 AIVTHEDFMDA 415
+T +D +A
Sbjct: 266 RKITMKDLEEA 276
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 150/245 (61%), Gaps = 1/245 (0%)
Query: 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLAR 230
E P + D+ G ++ +EL E V + + +F +G + PKGVLL GPPG GKT LAR
Sbjct: 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67
Query: 231 ACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 290
A A + + F+ +G V+MF+G GA VRD F AK AP I+FIDE+DA+G KR
Sbjct: 68 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 127
Query: 291 EKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 350
G+ E ++T+ +LL ++DGF I V+AATNR DILDPALLR GR DR+I P+
Sbjct: 128 VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 187
Query: 351 EEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHE 410
+ R +I++IH+R ++ DV+ L++ T F GA + + EA ++A R G +T +
Sbjct: 188 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 247
Query: 411 DFMDA 415
D +A
Sbjct: 248 DLEEA 252
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 149/265 (56%), Gaps = 19/265 (7%)
Query: 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARAC 232
P ++DIG L+ +EL A++ P+ + ++F LG+ P GVLL GPPG GKTLLA+A
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64
Query: 233 AAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEK 292
A ++ F+ + GP+L+ M++G+ + VR F AK AP +IF DE+DA+ +R D E
Sbjct: 65 ANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET 124
Query: 293 AGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEE 352
R + +LL ++DG + + ++AATNR DI+DPA+LR GRLD+ + P
Sbjct: 125 GAS---VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
Query: 353 ARARIMQIHSRKMNVSP---DVNYEELSRS--TDDFNGAQCKAVCVEAGMIALR------ 401
R I++ ++ P DVN E ++ D + GA A+ EA + ALR
Sbjct: 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQ 241
Query: 402 -----RGAAIVTHEDFMDAIMEVQA 421
+G V+H+ F +A +V++
Sbjct: 242 KSGNEKGELKVSHKHFEEAFKKVRS 266
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 145/251 (57%), Gaps = 10/251 (3%)
Query: 177 YSDIGGLDK---QIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACA 233
+ D+ G+ + +++E ++ + P E+F+ LG + PKG LL GPPG GKTLLA+A A
Sbjct: 5 FKDVAGMHEAKLEVREFVDYLKSP----ERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 234 AQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKA 293
+ + FL +AG + V++ G GA VR F A+ +AP I++IDE+DA+G KR +
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 294 -GDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEE 352
+ E ++T+ +LL ++DG +T + V+A+TNR DILD AL+R GRLDR + P +
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 353 ARARIMQIH--SRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHE 410
R I + H S K+ S + L+ T F+GA +C EA + A R G V
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240
Query: 411 DFMDAIMEVQA 421
+F A+ V A
Sbjct: 241 NFEYAVERVLA 251
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 149/273 (54%), Gaps = 21/273 (7%)
Query: 144 GVNKDSYLILETLPAE-YDARVKAME-----------VDERPTEQYSDIGGLDKQIQELI 191
G+ Y T PA D R+K +E +D P + DI G++ +
Sbjct: 38 GMQCKPYGAGPTEPAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIK 97
Query: 192 EAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251
E VV PM + F L PPKG+LL+GPPGTGKTL+ + A+Q+ +TF ++ L
Sbjct: 98 EIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156
Query: 252 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 311
++G+G K+VR FA+A+ + PA+IFIDE+D++ ++R D E R R E L QLDG
Sbjct: 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSR---RIKTEFLVQLDG 213
Query: 312 FSSTAD--IKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARI-MQIHSRKMNVS 368
+++++ I V+ ATNR +D A R RL +++ P P AR +I + + S++
Sbjct: 214 ATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCL 271
Query: 369 PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALR 401
+ E++ + +D F+GA +C EA + +R
Sbjct: 272 SEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 304
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 135/237 (56%), Gaps = 9/237 (3%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
V ERP ++SD+ GL+ + L EAV+LP+ F P +G+LL+GPPGTGK+ L
Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT-PWRGILLFGPPGTGKSYL 183
Query: 229 ARACAAQ-TKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 287
A+A A + STF ++ LV ++G+ KLV++ F LA+E P+IIFIDE+D++ R
Sbjct: 184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 243
Query: 288 FDSEKAGDREVQRTMLELLNQLDGFSSTAD-IKVIAATNRVDILDPALLRSGRLDRKIEF 346
++E R R E L Q+ G D I V+ ATN +LD A+ R R +++I
Sbjct: 244 SENESEAAR---RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 298
Query: 347 PHPNEEARARIMQIH-SRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402
P P ARA + ++H N + +++EL R TD ++GA + +A M +R+
Sbjct: 299 PLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 147 bits (372), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 135/237 (56%), Gaps = 9/237 (3%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
V ERP ++SD+ GL+ + L EAV+LP+ F P +G+LL+GPPGTGK+ L
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYL 61
Query: 229 ARACAAQ-TKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 287
A+A A + STF ++ LV ++G+ KLV++ F LA+E P+IIFIDE+D++ R
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 288 FDSEKAGDREVQRTMLELLNQLDGFSSTAD-IKVIAATNRVDILDPALLRSGRLDRKIEF 346
++E R ++ E L Q+ G D I V+ ATN +LD A+ R R +++I
Sbjct: 122 SENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 176
Query: 347 PHPNEEARARIMQIH-SRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402
P P ARA + ++H N + ++ EL R TD ++GA + +A M +R+
Sbjct: 177 PLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 133/237 (56%), Gaps = 11/237 (4%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
VD ++ DI G D Q L E V+LP E F L P +G+LL+GPPG GKT+L
Sbjct: 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTML 164
Query: 229 ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
A+A AA++ +TF ++ L ++G+G KLVR FA+A+E P+IIFID++D++ +R
Sbjct: 165 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR 224
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSSTAD--IKVIAATNRVDILDPALLRSGRLDRKIEF 346
+ E R R E L + DG S D + V+ ATNR LD A+LR R +++
Sbjct: 225 EGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYV 279
Query: 347 PHPNEEARARIMQIHSRKMNVSPDVNYE--ELSRSTDDFNGAQCKAVCVEAGMIALR 401
PNEE R +++ K SP E +L+R TD ++G+ A+ +A + +R
Sbjct: 280 SLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIR 335
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 135/239 (56%), Gaps = 14/239 (5%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
+ E+P ++ D+ GL+ + L EAV+LP+ F +P G+LLYGPPGTGK+ L
Sbjct: 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYL 100
Query: 229 ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
A+A A + STF ++ LV ++G+ KLV+ FA+A+E P+IIFID++DA+ R
Sbjct: 101 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 160
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSS-TADIKVIAATNRVDILDPALLRSGRLDRKIEFP 347
+ E R ++ ELL Q++G + + + V+ ATN LD A+ R R +R+I P
Sbjct: 161 EGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 215
Query: 348 HPNEEARARIMQIHSRKMNVSPDV----NYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402
P+ AR + +I+ + +P V +Y L T+ ++G+ V +A M +R+
Sbjct: 216 LPDLAARTTMFEIN---VGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 135/239 (56%), Gaps = 14/239 (5%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
+ E+P ++ D+ GL+ + L EAV+LP+ F +P G+LLYGPPGTGK+ L
Sbjct: 18 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYL 76
Query: 229 ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
A+A A + STF ++ LV ++G+ KLV+ FA+A+E P+IIFIDE+DA+ R
Sbjct: 77 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRG 136
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSS-TADIKVIAATNRVDILDPALLRSGRLDRKIEFP 347
+ E R ++ ELL Q++G + + + V+ ATN LD A+ R R +R+I P
Sbjct: 137 EGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 191
Query: 348 HPNEEARARIMQIHSRKMNVSPDV----NYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402
P+ AR + +I+ + +P V +Y L T+ ++G+ V +A M +R+
Sbjct: 192 LPDLAARTTMFEIN---VGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 247
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 135/239 (56%), Gaps = 14/239 (5%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
+ E+P ++ D+ GL+ + L EAV+LP+ F +P G+LLYGPPGTGK+ L
Sbjct: 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYL 67
Query: 229 ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
A+A A + STF ++ LV ++G+ KLV+ FA+A+E P+IIFID++DA+ R
Sbjct: 68 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 127
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSS-TADIKVIAATNRVDILDPALLRSGRLDRKIEFP 347
+ E R ++ ELL Q++G + + + V+ ATN LD A+ R R +R+I P
Sbjct: 128 EGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 182
Query: 348 HPNEEARARIMQIHSRKMNVSPDV----NYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402
P+ AR + +I+ + +P V +Y L T+ ++G+ V +A M +R+
Sbjct: 183 LPDLAARTTMFEIN---VGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 135/239 (56%), Gaps = 14/239 (5%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
+ E+P ++ D+ GL+ + L EAV+LP+ F +P G+LLYGPPGTGK+ L
Sbjct: 27 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYL 85
Query: 229 ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
A+A A + STF ++ LV ++G+ KLV+ FA+A+E P+IIFID++DA+ R
Sbjct: 86 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 145
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSS-TADIKVIAATNRVDILDPALLRSGRLDRKIEFP 347
+ E R ++ ELL Q++G + + + V+ ATN LD A+ R R +R+I P
Sbjct: 146 EGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 200
Query: 348 HPNEEARARIMQIHSRKMNVSPDV----NYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402
P+ AR + +I+ + +P V +Y L T+ ++G+ V +A M +R+
Sbjct: 201 LPDLAARTTMFEIN---VGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 256
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 127/230 (55%), Gaps = 10/230 (4%)
Query: 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ 235
+++DI G D Q L E V+LP E F L P KG+LL+GPPG GKTLLARA A +
Sbjct: 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATE 77
Query: 236 TKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGD 295
+TFL ++ L ++GDG KLVR FA+A+ P+IIFIDE+D++ ++R SE
Sbjct: 78 CSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEAS 137
Query: 296 REVQRTMLELLNQLDGFSSTAD---IKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEE 352
R R E L + DG D I V+AATNR LD A LR R +++ P+E+
Sbjct: 138 R---RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQ 192
Query: 353 ARARIMQIHSRKMNVSPDVN-YEELSRSTDDFNGAQCKAVCVEAGMIALR 401
R ++ +K D L++ TD ++G+ A+ +A + +R
Sbjct: 193 TRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIR 242
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 349 PNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVT 408
PNEEAR I++IHSRKMN++ +N +++ +GA+ K VC EAGM ALR VT
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 70
Query: 409 HEDFMDAIMEVQAK 422
EDF A+ +V K
Sbjct: 71 QEDFEMAVAKVMQK 84
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%)
Query: 347 PHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAI 406
P PNEEAR I++IHSRK N++ +N +++ +GA+ K VC EAG ALR
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERRVH 60
Query: 407 VTHEDFMDAIMEVQAK 422
VT EDF A+ +V K
Sbjct: 61 VTQEDFEXAVAKVXQK 76
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 62.0 bits (149), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 45/71 (63%)
Query: 349 PNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVT 408
P+ E RA I +IHS+ M+V + +E +SR + GA+ ++VC EAGM A+R + T
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVAT 67
Query: 409 HEDFMDAIMEV 419
+DF+ A+ +V
Sbjct: 68 EKDFLKAVDKV 78
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 352 EARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411
E RA I +IHS+ +V + +E +SR + GA+ ++VC EAG A+R + T +D
Sbjct: 4 EGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIRARRKVATEKD 63
Query: 412 FMDAIMEV 419
F+ A+ +V
Sbjct: 64 FLKAVDKV 71
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM-FIGDGA-KLVRD-----AF 264
PK +L+ GP G GKT +AR A + F+K+ + ++ ++G ++RD
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 265 ALAKEKAPAIIFIDELDAIGTKRFDSEKAGDRE-VQRTMLELL 306
A+ + I+FIDE+D I K S RE VQR +L L+
Sbjct: 110 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 28/180 (15%)
Query: 191 IEAVVLPMTHKEKFVNLGIQPPKG----VLLYGP-PGTGKTLLARACAAQTKSTFLKLAG 245
I+ +LP KE F ++ KG ++L+ P PGTGKT +A+A + + + G
Sbjct: 25 IDECILPAFDKETFKSI---TSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81
Query: 246 PQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 305
F+ L A A + + +I IDE D ++G E QR L
Sbjct: 82 SDCKIDFV--RGPLTNFASAASFDGRQKVIVIDEFD----------RSGLAESQR---HL 126
Query: 306 LNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKM 365
+ ++ +SS I +I A N I+ P R R I F P +E + +M+ R++
Sbjct: 127 RSFMEAYSSNCSI-IITANNIDGIIKPLQSRC----RVITFGQPTDEDKIEMMKQMIRRL 181
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 357 IMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416
I + KMN+S +V+ E+ D +GA ++C E+GM+A+R IV +DF A
Sbjct: 9 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAY 68
Query: 417 MEVQAKKKANLNYY 430
V K + +Y
Sbjct: 69 KTVIKKDEQEHEFY 82
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAI 274
VLL GPPG GKT LA A++ ++ +GP LV+ GD A + L + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 275 IFIDEL 280
+FIDE+
Sbjct: 106 LFIDEI 111
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 30/181 (16%)
Query: 198 MTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGD-- 255
+T KFV+ G P +L YGPPGTGKT A + + K ++++ D
Sbjct: 34 ITTVRKFVDEGKLP--HLLFYGPPGTGKT---STIVALAREIYGKNYSNMVLELNASDDR 88
Query: 256 GAKLVRDA---FALAKE---KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL 309
G +VR+ FA ++ K +I +DE DA+ ++ A R ++R
Sbjct: 89 GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA---AQNALRRVIERY-------- 137
Query: 310 DGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP 369
T + + N L PALL R P E R + +H K+ +SP
Sbjct: 138 -----TKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHE-KLKLSP 191
Query: 370 D 370
+
Sbjct: 192 N 192
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAI 274
VLL GPPG GKT LA A++ ++ +GP LV+ GD A + L + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 275 IFIDEL 280
+FIDE+
Sbjct: 106 LFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAI 274
VLL GPPG GKT LA A++ ++ +GP LV+ GD A + L + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 275 IFIDEL 280
+FIDE+
Sbjct: 106 LFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAI 274
VLL GPPG GKT LA A++ ++ +GP LV+ GD A + L + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 275 IFIDEL 280
+FIDE+
Sbjct: 106 LFIDEI 111
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAI 274
VLL GPPG GKT LA A++ ++ +GP LV+ GD A + L + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 275 IFIDEL 280
+FIDE+
Sbjct: 106 LFIDEI 111
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAI 274
VLL GPPG G+T LA A++ ++ +GP LV+ GD A + L + +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAI------LTSLERGDV 105
Query: 275 IFIDEL 280
+FIDE+
Sbjct: 106 LFIDEI 111
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPA- 273
++L+GPPGTGKT LA A + +++ + G K +R+A A++ A
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 274 ---IIFIDELDAIGTKRFDS 290
I+F+DE+ + D+
Sbjct: 106 RRTILFVDEVHRFNKSQQDA 125
>pdb|2WG6|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
pdb|2WG6|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4, P61a Mutant
Length = 109
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 114 AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDE 171
V+K+ST + + ++ E+LKPG V +N+ + I+ LP D V EV+E
Sbjct: 52 VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEE 109
>pdb|2WG5|A Chain A, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|B Chain B, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|C Chain C, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|D Chain D, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|E Chain E, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|F Chain F, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|G Chain G, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|H Chain H, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|I Chain I, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|J Chain J, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|K Chain K, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
pdb|2WG5|L Chain L, Proteasome-Activating Nucleotidase (Pan) N-Domain (57-134)
From Archaeoglobus Fulgidus Fused To Gcn4
Length = 109
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 114 AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDE 171
V+K+ST + + ++ E+LKPG V +N+ + I+ LP D V EV+E
Sbjct: 52 VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEE 109
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM-FIG 254
PK +L+ GP G GKT +AR A + F+K+ + ++ ++G
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM-FIGDGAKLVRDAFALAKEK 270
PK +L+ GP G GKT +AR A + F+K+ + ++ ++G ++ ++ ++
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG------KEVDSIIRDL 103
Query: 271 APAIIFIDELDAIGTKRFDSEKAGDREV 298
A + + + AI R+ +E+ + +
Sbjct: 104 TDAAVKMVRVQAIEKNRYRAEELAEERI 131
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM-FIGDGAKLVRDAFALAKEK 270
PK +L+ GP G GKT +AR A + F+K+ + ++ ++G ++ ++ ++
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG------KEVDSIIRDL 102
Query: 271 APAIIFIDELDAIGTKRFDSEKAGDREV 298
A + + + AI R+ +E+ + +
Sbjct: 103 TDAAVKMVRVQAIEKNRYRAEELAEERI 130
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM-FIGDGAKLVRDAFALAKEK 270
PK +L+ GP G GKT +AR A + F+K+ + ++ ++G ++ ++ ++
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG------KEVDSIIRDL 109
Query: 271 APAIIFIDELDAIGTKRFDSEKAGDREV 298
A + + + AI R+ +E+ + +
Sbjct: 110 TDAAVKMVRVQAIEKNRYRAEELAEERI 137
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 25/138 (18%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQ--TKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 270
+ VLL GPPGTGKT LA A A + +K F + G ++ I K
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEI----------------K 107
Query: 271 APAIIFIDELDAIGTKRFDSEKAGDREV-QRTMLELLNQLDGFSSTAD-----IKVIAAT 324
++ + AIG + ++++ + EV + T E N + G+ T +K T
Sbjct: 108 KTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGT 167
Query: 325 NRVDILDPALLRSGRLDR 342
++ LDP++ S + +R
Sbjct: 168 KQLK-LDPSIFESLQKER 184
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 31/159 (19%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGD--GAKLVRDAFALAKEKAP 272
+L GPPGTGKT A A A + F + ++M D G +VR AP
Sbjct: 41 LLFSGPPGTGKTATAIALA---RDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP 97
Query: 273 ------AIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326
IIF+DE DA+ D++ A ++RTM + +S + + I + N
Sbjct: 98 IGGAPFKIIFLDEADALTA---DAQAA----LRRTM-------EMYSKSC--RFILSCNY 141
Query: 327 VD-ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK 364
V I++P R K P P E + R+++I ++
Sbjct: 142 VSRIIEPIQSRCAVFRFK---PVPKEAMKKRLLEICEKE 177
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 31/155 (20%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGD--GAKLVRDAFALAKEKAP 272
+L GPPGTGKT A A A + F + ++M D G +VR AP
Sbjct: 41 LLFSGPPGTGKTATAIALA---RDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP 97
Query: 273 ------AIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326
IIF+DE DA+ D++ A ++RTM E+ ++ + I + N
Sbjct: 98 IGGAPFKIIFLDEADALTA---DAQAA----LRRTM-EMYSK--------SCRFILSCNY 141
Query: 327 VD-ILDPALLRSGRLDRKIEFPHPNEEARARIMQI 360
V I++P R K P P E + R+++I
Sbjct: 142 VSRIIEPIQSRCAVFRFK---PVPKEAMKKRLLEI 173
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKE 269
+P + +LL+GPPG GKT LA A + +GP + + GD A ++ ++
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSL----- 88
Query: 270 KAPAIIFIDELDAI 283
+ I+FIDE+ +
Sbjct: 89 EEGDILFIDEIHRL 102
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM-FIG 254
PK +L GP G GKT +AR A + F+K+ + ++ ++G
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKE 269
+P + +LL+GPPG GKT LA A + +GP + + GD A ++ ++
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD- 92
Query: 270 KAPAIIFIDELDAI 283
I+FIDE+ +
Sbjct: 93 ----ILFIDEIHRL 102
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQ--TKSTFLKLAGPQLVQMFIGDGAKL---VRDAFAL- 266
+ VLL GPPGTGKT LA A A + +K F G ++ I L R A L
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLR 137
Query: 267 AKEKAPAII 275
KE P II
Sbjct: 138 IKEGPPGII 146
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKE 269
+P + +LL+GPPG GKT LA A + +GP + + GD A ++ ++
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEGD- 92
Query: 270 KAPAIIFIDELDAI 283
I+FIDE+ +
Sbjct: 93 ----ILFIDEIHRL 102
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP 246
P VLL GPP +GKT LA A ++ F+K+ P
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP 97
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 20/96 (20%)
Query: 215 VLLYGPPGTGKTLLARACA-------AQTKSTFLKLAGPQLVQMFIGDGA-----KLVRD 262
+LL GP G+GKTL+A+ A A + +T L AG ++G+ +L++
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAG------YVGEDVENILTRLLQA 128
Query: 263 AFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREV 298
+ ++ I+FIDE+D I R ++ R+V
Sbjct: 129 SDWNVQKAQKGIVFIDEIDKIS--RLSENRSITRDV 162
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP 246
P VLL GPP +GKT LA A ++ F+K+ P
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP 98
>pdb|3H43|A Chain A, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|B Chain B, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|C Chain C, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|D Chain D, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|E Chain E, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|F Chain F, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|G Chain G, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|H Chain H, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|I Chain I, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|J Chain J, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|K Chain K, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
pdb|3H43|L Chain L, N-Terminal Domain Of The Proteasome-Activating
Nucleotidase Of Methanocaldococcus Jannaschii
Length = 85
Score = 33.5 bits (75), Expect = 0.23, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 100 GAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLP 157
G VVD +RK V+K+ST ++ + V V+ + L PG V +N+ + +++ LP
Sbjct: 22 GTVVDKVGERK---VVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLP 76
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 47/189 (24%)
Query: 191 IEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFL-KLAGPQLV 249
I +++ P+ +EK P + +YG GTGKT + + ++ FL K +
Sbjct: 32 IASILAPLYREEK--------PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83
Query: 250 QMFIGDGAKLVRDAFALAKEKAP-----------------------AIIFIDELDAIGTK 286
I +++ D K P +I +DE+DA K
Sbjct: 84 TRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKK 143
Query: 287 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN---RVDILDPALLRSGRLDRK 343
D +L L++++ + + I I TN VD+LDP ++S + +
Sbjct: 144 YNDD-----------ILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPR-VKSSLSEEE 191
Query: 344 IEFPHPNEE 352
I FP N E
Sbjct: 192 IIFPPYNAE 200
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 194 VVLP----MTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
+V+P + H++ F +L + +G++L GPPG+GKT++
Sbjct: 1027 IVIPTIDTIKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1064
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 38/145 (26%)
Query: 192 EAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ-----TKSTFLKLAGP 246
E +V + H +V G P +L GPPG GKT A A A + + FL+L
Sbjct: 31 EHIVKRLKH---YVKTGSMP--HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85
Query: 247 QLVQMFIGDGAKLVRDA---FALAKEKAPA---IIFIDELDAIGTKRFDSEKAGDREVQR 300
G ++R+ FA K A IIF+DE DA+ D+++A ++R
Sbjct: 86 D------ERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---DAQQA----LRR 132
Query: 301 TMLELLNQLDGFSSTADIKVIAATN 325
TM + FSS +++ I + N
Sbjct: 133 TM-------EMFSS--NVRFILSCN 148
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 194 VVLP----MTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
+V+P + H++ F +L + +G++L GPPG+GKT++
Sbjct: 1246 IVIPTIDTIKHEKIFYDL-LNSKRGIILCGPPGSGKTMI 1283
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 354 RARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413
R I + KM+++P+ + + L D +GA A+ EAG+ A+R+ ++ D
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 62
Query: 414 DA 415
+A
Sbjct: 63 EA 64
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM-FIGDGA-----KLVRDAFALAK 268
+LL GP G+GKTLLA A F L + ++G+ KL++ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 269 EKAPAIIFIDELDAIGTKRFDSEKAGD---REVQRTMLELL 306
+ I++ID++D I K + D VQ+ +L+L+
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLI 154
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM-FIGDGA-----KLVRDAFALAK 268
+LL GP G+GKTLLA A F L + ++G+ KL++ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 269 EKAPAIIFIDELDAIGTKRFDSEKAGD---REVQRTMLELL 306
+ I++ID++D I K + D VQ+ +L+L+
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLI 154
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 208 GIQPPKGV--LLYGPPGTGKTLLARACAAQ 235
++ PKG+ L+ G PGTGKT +A AA+
Sbjct: 4 SMEQPKGINILITGTPGTGKTSMAEMIAAE 33
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLA 244
+ L GPPG GKT LA++ A F++++
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 188 QELIEAV----VLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKT 226
QE ++ V V M + + +NL QPP VL+ G G GKT
Sbjct: 72 QEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKT 114
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 188 QELIEAV----VLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKT 226
QE ++ V V M + + +NL QPP VL+ G G GKT
Sbjct: 71 QEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKT 113
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250
+L YGPPGTGKT A TK +L GP L++
Sbjct: 61 MLFYGPPGTGKT---STILALTK----ELYGPDLMK 89
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
Length = 620
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 204 FVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS 238
F+ +Q GV L P G+GKT++A A Q S
Sbjct: 14 FLRSSLQKSYGVALESPTGSGKTIMALKSALQYSS 48
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 195 VLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACA 233
V+ H + + + VLL G PGTGK++L +A A
Sbjct: 43 VIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMA 81
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 31/173 (17%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL-VQMFIGDGAKLVRDAFALA---K 268
+ +LYGPPG GKT A A + L+ + + + G K D ++ K
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 269 EKAPA--------IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKV 320
A +I +DE+D + GDR + QL F +
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGM--------SGGDRGG-------VGQLAQFCRKTSTPL 182
Query: 321 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEA-RARIMQIHSR-KMNVSPDV 371
I N ++ P + R+ I+F P+ + ++R+M I R K + P+V
Sbjct: 183 ILICNERNL--PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV 233
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 67/165 (40%), Gaps = 36/165 (21%)
Query: 219 GPPGTGKTLLARACAAQ-------TKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 271
G PGTGKT +A A K + + LV +IG A ++ K
Sbjct: 74 GNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVL---KRAX 130
Query: 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331
++FIDE A R D+E R+ + +E+L Q + NR D++
Sbjct: 131 GGVLFIDE--AYYLYRPDNE----RDYGQEAIEILLQ------------VXENNRDDLV- 171
Query: 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEEL 376
++ +G DR F N R+RI H + PD + EEL
Sbjct: 172 --VILAGYADRXENFFQSNPGFRSRIA--HHIEF---PDYSDEEL 209
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 24/146 (16%)
Query: 219 GPPGTGKTLLARACAAQ-------TKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 271
G PGTGKT +A A K + + LV +IG A ++ K
Sbjct: 67 GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVL---KRAM 123
Query: 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAA--TNRVDI 329
++FIDE A R D+E+ +E +L+++ ++ D+ VI A +R++
Sbjct: 124 GGVLFIDE--AYYLYRPDNERDYGQEAIEILLQVME-----NNRDDLVVILAGYADRMEN 176
Query: 330 L---DPALLRSGRLDRKIEFPHPNEE 352
+P RS R+ IEFP ++E
Sbjct: 177 FFQSNPG-FRS-RIAHHIEFPDYSDE 200
>pdb|1Y0R|A Chain A, Crystal Structure Of The Tetrahedral Aminopeptidase From
P. Horikoshii
pdb|1Y0Y|A Chain A, Crystal Structure Of Tetrahedral Aminopeptidase From P.
Horikoshii In Complex With Amastatin
Length = 353
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 246 PQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 305
P Q+FI GA+ +A + + I + L+ +G RF S DR T+LE+
Sbjct: 134 PDWDQIFIDIGAESKEEAEDMGVKIGTVITWDGRLERLGKHRFVSIAFDDRIAVYTILEV 193
Query: 306 LNQLDGFSSTADIKVIAATN 325
QL + AD+ +A
Sbjct: 194 AKQLK--DAKADVYFVATVQ 211
>pdb|1XFO|A Chain A, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|B Chain B, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|C Chain C, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|D Chain D, Crystal Structure Of An Archaeal Aminopeptidase
Length = 357
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 246 PQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 305
P Q+FI GA+ +A + + I + L+ +G RF S DR T+LE+
Sbjct: 138 PDWDQIFIDIGAESKEEAEDMGVKIGTVITWDGRLERLGKHRFVSIAFDDRIAVYTILEV 197
Query: 306 LNQLDGFSSTADIKVIAATN 325
QL + AD+ +A
Sbjct: 198 AKQLK--DAKADVYFVATVQ 215
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 36/165 (21%)
Query: 219 GPPGTGKTLLARACAAQ-------TKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 271
G PGTGKT +A A K + + LV +IG A ++ K
Sbjct: 74 GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVL---KRAM 130
Query: 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331
++FIDE A R D+E+ +E +L+++ NR D++
Sbjct: 131 GGVLFIDE--AYYLYRPDNERDYGQEAIEILLQVME----------------NNRDDLV- 171
Query: 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEEL 376
++ +G DR F N R+RI H + PD + EEL
Sbjct: 172 --VILAGYADRMENFFQSNPGFRSRIA--HHIEF---PDYSDEEL 209
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 193 AVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLA--RACAAQTKSTFLKLAGPQLVQ 250
VVL M + K + VL+ G PGTGKT +A A A + F +AG ++
Sbjct: 57 GVVLEMIREGKIAG------RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110
Query: 251 M 251
+
Sbjct: 111 L 111
>pdb|2H0L|A Chain A, Crystal Structure Of A Mutant Of Rat Annexin A5
Length = 318
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV--DPQDTEEDGAVVDLDAQRKGKCAVI 116
QA E+ N E V Y ++ LL DP DT D A V+LDAQ + +
Sbjct: 124 QAYEEEYGSNLEDDVVGDTSGYYQEMLVVLLQANRDP-DTAIDDAQVELDAQALFQAGEL 182
Query: 117 KTSTRQTYFLPVIG 130
K T + F+ ++G
Sbjct: 183 KWGTDEEEFITILG 196
>pdb|1BC0|A Chain A, Recombinant Rat Annexin V, W185a Mutant
Length = 319
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV--DPQDTEEDGAVVDLDAQRKGKCAVI 116
QA E+ N E V Y ++ LL DP DT D A V+LDAQ + +
Sbjct: 125 QAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDP-DTAIDDAQVELDAQALFQAGEL 183
Query: 117 KTSTRQTYFLPVIGLVDAEKLK 138
K T + F+ ++G L+
Sbjct: 184 KAGTDEEKFITILGTRSVSHLR 205
>pdb|1N42|A Chain A, Crystal Structure Of Annexin V R149e Mutant
Length = 319
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV--DPQDTEEDGAVVDLDAQRKGKCAVI 116
QA E+ N E V Y ++ LL DP DT D A V+LDAQ + +
Sbjct: 125 QAYEEEYGSNLEDDVVGDTSGYYQEMLVVLLQANRDP-DTAIDDAQVELDAQALFQAGEL 183
Query: 117 KTSTRQTYFLPVIGLVDAEKLK 138
K T + F+ ++G L+
Sbjct: 184 KWGTDEEKFITILGTRSVSHLR 205
>pdb|2H0K|A Chain A, Crystal Structure Of A Mutant Of Rat Annexin A5
pdb|2H0K|B Chain B, Crystal Structure Of A Mutant Of Rat Annexin A5
Length = 318
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV--DPQDTEEDGAVVDLDAQRKGKCAVI 116
QA E+ N E V Y ++ LL DP DT D A V+LDAQ + +
Sbjct: 124 QAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDP-DTAIDDAQVELDAQALFQAGEL 182
Query: 117 KTSTRQTYFLPVIG 130
K T + F+ ++G
Sbjct: 183 KWGTDEEEFITILG 196
>pdb|1BCW|A Chain A, Recombinant Rat Annexin V, T72a Mutant
Length = 319
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV--DPQDTEEDGAVVDLDAQRKGKCAVI 116
QA E+ N E V Y ++ LL DP DT D A V+LDAQ + +
Sbjct: 125 QAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDP-DTAIDDAQVELDAQALFQAGEL 183
Query: 117 KTSTRQTYFLPVIGLVDAEKLK 138
K T + F+ ++G L+
Sbjct: 184 KWGTDEEKFITILGTRSVSHLR 205
>pdb|1N41|A Chain A, Crystal Structure Of Annexin V K27e Mutant
Length = 319
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV--DPQDTEEDGAVVDLDAQRKGKCAVI 116
QA E+ N E V Y ++ LL DP DT D A V+LDAQ + +
Sbjct: 125 QAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDP-DTAIDDAQVELDAQALFQAGEL 183
Query: 117 KTSTRQTYFLPVIGLVDAEKLK 138
K T + F+ ++G L+
Sbjct: 184 KWGTDEEKFITILGTRSVSHLR 205
>pdb|1BCZ|A Chain A, Recombinant Rat Annexin V, T72s Mutant
Length = 319
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV--DPQDTEEDGAVVDLDAQRKGKCAVI 116
QA E+ N E V Y ++ LL DP DT D A V+LDAQ + +
Sbjct: 125 QAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDP-DTAIDDAQVELDAQALFQAGEL 183
Query: 117 KTSTRQTYFLPVIGLVDAEKLK 138
K T + F+ ++G L+
Sbjct: 184 KWGTDEEKFITILGTRSVSHLR 205
>pdb|2RAN|A Chain A, Rat Annexin V Crystal Structure: Ca2+-Induced
Conformational Changes
Length = 316
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV--DPQDTEEDGAVVDLDAQRKGKCAVI 116
QA E+ N E V Y ++ LL DP DT D A V+LDAQ + +
Sbjct: 124 QAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDP-DTAIDDAQVELDAQALFQAGEL 182
Query: 117 KTSTRQTYFLPVIGLVDAEKLK 138
K T + F+ ++G L+
Sbjct: 183 KWGTDEEKFITILGTRSVSHLR 204
>pdb|1N44|A Chain A, Crystal Structure Of Annexin V R23e Mutant
Length = 319
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV--DPQDTEEDGAVVDLDAQRKGKCAVI 116
QA E+ N E V Y ++ LL DP DT D A V+LDAQ + +
Sbjct: 125 QAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDP-DTAIDDAQVELDAQALFQAGEL 183
Query: 117 KTSTRQTYFLPVIGLVDAEKLK 138
K T + F+ ++G L+
Sbjct: 184 KWGTDEEKFITILGTRSVSHLR 205
>pdb|1G5N|A Chain A, Annexin V Complex With Heparin Oligosaccharides
pdb|2IE6|A Chain A, Annexin V Under 2.0 Mpa Pressure Of Xenon
pdb|2IE7|A Chain A, Annexin V Under 2.0 Mpa Pressure Of Nitrous Oxide
Length = 318
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV--DPQDTEEDGAVVDLDAQRKGKCAVI 116
QA E+ N E V Y ++ LL DP DT D A V+LDAQ + +
Sbjct: 124 QAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDP-DTAIDDAQVELDAQALFQAGEL 182
Query: 117 KTSTRQTYFLPVIGLVDAEKLK 138
K T + F+ ++G L+
Sbjct: 183 KWGTDEEKFITILGTRSVSHLR 204
>pdb|1A8A|A Chain A, Rat Annexin V Complexed With Glycerophosphoserine
pdb|1A8B|A Chain A, Rat Annexin V Complexed With Glycerophosphoethanolamine
Length = 319
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV--DPQDTEEDGAVVDLDAQRKGKCAVI 116
QA E+ N E V Y ++ LL DP DT D A V+LDAQ + +
Sbjct: 125 QAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDP-DTAIDDAQVELDAQALFQAGEL 183
Query: 117 KTSTRQTYFLPVIGLVDAEKLK 138
K T + F+ ++G L+
Sbjct: 184 KWGTDEEKFITILGTRSVSHLR 205
>pdb|1BCY|A Chain A, Recombinant Rat Annexin V, T72k Mutant
Length = 319
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV--DPQDTEEDGAVVDLDAQRKGKCAVI 116
QA E+ N E V Y ++ LL DP DT D A V+LDAQ + +
Sbjct: 125 QAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDP-DTAIDDAQVELDAQALFQAGEL 183
Query: 117 KTSTRQTYFLPVIGLVDAEKLK 138
K T + F+ ++G L+
Sbjct: 184 KWGTDEEKFITILGTRSVSHLR 205
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
Vulgatus
Length = 801
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 26 LRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNK--NLPYLVS 83
R + S T L EI+ + + +++ LQA N I + +EKI V+ +L +L
Sbjct: 171 FRSKLQNKQSATYTLSIEIETQEKKPIKVKTYLQAPNGSIADTSEKIFVSSADSLCFLSG 230
Query: 84 NVIELLDVDPQDTEEDGAVVDLDAQRK--GKCAVIKTSTRQTYFLPVIG-LVDAEKLK 138
++ + L P + L K +C + RQ F PV G L++ + LK
Sbjct: 231 SIRKPLLWSPDSPNVYTLICQLTRDNKILDECR-LPVGFRQLEFNPVSGFLLNGKSLK 287
>pdb|3BS3|A Chain A, Crystal Structure Of A Putative Dna-Binding Protein From
Bacteroides Fragilis
Length = 76
Score = 28.1 bits (61), Expect = 9.0, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 42 NEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYL--VSNVIELLDVDPQ 94
N IK++ +E R + L Q K + NK+ P L + V ELL+VDP+
Sbjct: 13 NRIKVVLAEKQRTNRWLAEQXGKSENTISRWCSNKSQPSLDXLVKVAELLNVDPR 67
>pdb|1BC3|A Chain A, Recombinant Rat Annexin V, Triple Mutant (T72k, S144k,
S228k)
Length = 319
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV--DPQDTEEDGAVVDLDAQRKGKCAVI 116
QA E+ N E V Y ++ LL DP DT D A V+LDAQ + +
Sbjct: 125 QAYEEEYGSNLEDDVVGDTKGYYQRMLVVLLQANRDP-DTAIDDAQVELDAQALFQAGEL 183
Query: 117 KTSTRQTYFLPVIG 130
K T + F+ ++G
Sbjct: 184 KWGTDEEKFITILG 197
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 14/66 (21%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDA----FALAKEK 270
++L GP G GKT R A L P Q++IGD KLV D F K++
Sbjct: 32 MILLGPSGCGKTTTLRMIAG--------LEEPSRGQIYIGD--KLVADPEKGIFVPPKDR 81
Query: 271 APAIIF 276
A++F
Sbjct: 82 DIAMVF 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,239,409
Number of Sequences: 62578
Number of extensions: 498688
Number of successful extensions: 1632
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1508
Number of HSP's gapped (non-prelim): 127
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)