BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15151
(431 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O88685|PRS6A_MOUSE 26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=1
SV=2
Length = 442
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/430 (84%), Positives = 398/430 (92%), Gaps = 2/430 (0%)
Query: 4 PATATLEDSSIWEGEE--SLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQ 61
P T + +++W+ E +G+++L+MST++I RTRLLD+EIKIMKSEV+R++HELQA
Sbjct: 13 PVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAM 72
Query: 62 NEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTR 121
+KI+EN+EKIKVNK LPYLVSNVIELLDVDP D EEDGA +DLD+QRKGKCAVIKTSTR
Sbjct: 73 KDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTR 132
Query: 122 QTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIG 181
QTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLP EYD+RVKAMEVDERPTEQYSDIG
Sbjct: 133 QTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIG 192
Query: 182 GLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFL 241
GLDKQIQEL+EA+VLPM HKEKF NLGIQPPKGVL+YGPPGTGKTLLARACAAQTK+TFL
Sbjct: 193 GLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFL 252
Query: 242 KLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRT 301
KLAGPQLVQMFIGDGAKLVRDAFALAKEKAP+IIFIDELDAIGTKRFDSEKAGDREVQRT
Sbjct: 253 KLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRT 312
Query: 302 MLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIH 361
MLELLNQLDGF +KVIAATNRVDILDPALLRSGRLDRKIEFP PNEEARARIMQIH
Sbjct: 313 MLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIH 372
Query: 362 SRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQA 421
SRKMNVSPDVNYEEL+R TDDFNGAQCKAVCVEAGMIALRRGA +THED+M+ I+EVQA
Sbjct: 373 SRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQA 432
Query: 422 KKKANLNYYA 431
KKKANL YYA
Sbjct: 433 KKKANLQYYA 442
>sp|Q63569|PRS6A_RAT 26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3
PE=2 SV=1
Length = 439
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/430 (84%), Positives = 398/430 (92%), Gaps = 2/430 (0%)
Query: 4 PATATLEDSSIWEGEE--SLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQ 61
P T + +++W+ E +G+++L+MST++I RTRLLD+EIKIMKSEV+R++HELQA
Sbjct: 10 PVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAM 69
Query: 62 NEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTR 121
+KI+EN+EKIKVNK LPYLVSNVIELLDVDP D EEDGA +DLD+QRKGKCAVIKTSTR
Sbjct: 70 KDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTR 129
Query: 122 QTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIG 181
QTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLP EYD+RVKAMEVDERPTEQYSDIG
Sbjct: 130 QTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIG 189
Query: 182 GLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFL 241
GLDKQIQEL+EA+VLPM HKEKF NLGIQPPKGVL+YGPPGTGKTLLARACAAQTK+TFL
Sbjct: 190 GLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFL 249
Query: 242 KLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRT 301
KLAGPQLVQMFIGDGAKLVRDAFALAKEKAP+IIFIDELDAIGTKRFDSEKAGDREVQRT
Sbjct: 250 KLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRT 309
Query: 302 MLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIH 361
MLELLNQLDGF +KVIAATNRVDILDPALLRSGRLDRKIEFP PNEEARARIMQIH
Sbjct: 310 MLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIH 369
Query: 362 SRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQA 421
SRKMNVSPDVNYEEL+R TDDFNGAQCKAVCVEAGMIALRRGA +THED+M+ I+EVQA
Sbjct: 370 SRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQA 429
Query: 422 KKKANLNYYA 431
KKKANL YYA
Sbjct: 430 KKKANLQYYA 439
>sp|P17980|PRS6A_HUMAN 26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1
SV=3
Length = 439
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/433 (84%), Positives = 399/433 (92%), Gaps = 2/433 (0%)
Query: 1 MSGPATATLEDSSIWEGEE--SLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHEL 58
+ P T + +++W+ E +G+++L+MST++I RTRLLD+EIKIMKSEV+R++HEL
Sbjct: 7 IESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHEL 66
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKT 118
QA +KI+EN+EKIKVNK LPYLVSNVIELLDVDP D EEDGA +DLD+QRKGKCAVIKT
Sbjct: 67 QAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKT 126
Query: 119 STRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYS 178
STRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLP EYD+RVKAMEVDERPTEQYS
Sbjct: 127 STRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYS 186
Query: 179 DIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS 238
DIGGLDKQIQEL+EA+VLPM HKEKF NLGIQPPKGVL+YGPPGTGKTLLARACAAQTK+
Sbjct: 187 DIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKA 246
Query: 239 TFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREV 298
TFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAP+IIFIDELDAIGTKRFDSEKAGDREV
Sbjct: 247 TFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREV 306
Query: 299 QRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIM 358
QRTMLELLNQLDGF +KVIAATNRVDILDPALLRSGRLDRKIEFP PNEEARARIM
Sbjct: 307 QRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIM 366
Query: 359 QIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIME 418
QIHSRKMNVSPDVNYEEL+R TDDFNGAQCKAVCVEAGMIALRRGA +THED+M+ I+E
Sbjct: 367 QIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILE 426
Query: 419 VQAKKKANLNYYA 431
VQAKKKANL YYA
Sbjct: 427 VQAKKKANLQYYA 439
>sp|O42586|PR6AB_XENLA 26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-b
PE=2 SV=1
Length = 404
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/404 (88%), Positives = 382/404 (94%)
Query: 28 MSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIE 87
MST++I RTRLLD+EIKIMKSEV+R++HELQA +KI+EN+EKIKVNK LPYLVSNVIE
Sbjct: 1 MSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIE 60
Query: 88 LLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNK 147
LLDVDP D EEDGA +DLD+QRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNK
Sbjct: 61 LLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNK 120
Query: 148 DSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNL 207
DSYLILETLP EYD+RVKAMEVDERPTEQYSDIGGLDKQIQEL+EA+VLPM HKEKF NL
Sbjct: 121 DSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENL 180
Query: 208 GIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALA 267
GIQPPKGVL+YGPPGTGKTLLARACAAQTK+TFLKLAGPQLVQMFIGDGAKLVRDAF+LA
Sbjct: 181 GIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLA 240
Query: 268 KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327
KEKAP+IIFIDELDAIG KRFDSEKAGDREVQRTMLELLNQLDGF T +KVIAATNRV
Sbjct: 241 KEKAPSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRV 300
Query: 328 DILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQ 387
DILDPALLRSGRLDRKIEFP PNEEARARIMQIHSRKMNVSPDVNYEEL+R TDDFNGAQ
Sbjct: 301 DILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQ 360
Query: 388 CKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKANLNYYA 431
CKAVCVEAG+IALRRGA +THED+M+ I+EVQAKKKANL YYA
Sbjct: 361 CKAVCVEAGIIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 404
>sp|O42587|PR6AA_XENLA 26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-a
PE=2 SV=1
Length = 405
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/395 (85%), Positives = 361/395 (91%), Gaps = 2/395 (0%)
Query: 12 SSIWEGEES--LGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENT 69
+SIWE E+ LG+++L+MST++I RTRLLD+EIKIMKSEV+R++HELQA +KI+EN+
Sbjct: 2 ASIWEETEADGLGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMRDKIKENS 61
Query: 70 EKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVI 129
EKIKVNK LPYLVSNVIELLDVDP D EEDGA +DLD+QRKGKCAVIKTSTRQTYFLPVI
Sbjct: 62 EKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVI 121
Query: 130 GLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQE 189
GLVDAEKLKPGDLVGVNKDSYLILETLP EYD+RVKAMEVDERPTEQYSDIGGLDKQIQE
Sbjct: 122 GLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQE 181
Query: 190 LIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249
L+EA+VLPM HKEKF NLGIQPPKGVL+YGPPGTGKTLLARACAAQTK+TFLKLAGPQLV
Sbjct: 182 LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLV 241
Query: 250 QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL 309
QMFIGDGAKLVRDAFALAKEKAP+IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL
Sbjct: 242 QMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL 301
Query: 310 DGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP 369
DGF +KVIAATNRVDILDPALLRSGRLDRKIEFP PNEEARARIMQIHSRKMNVSP
Sbjct: 302 DGFQPNMQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSP 361
Query: 370 DVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA 404
DVNYEEL+R K VEAGMIALRRGA
Sbjct: 362 DVNYEELARCPTISMALSAKQFGVEAGMIALRRGA 396
>sp|Q9SEI2|PS6AA_ARATH 26S protease regulatory subunit 6A homolog A OS=Arabidopsis
thaliana GN=RPT5A PE=2 SV=1
Length = 424
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/428 (76%), Positives = 374/428 (87%), Gaps = 6/428 (1%)
Query: 5 ATATLEDSSIWEGEESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEK 64
AT +ED+S +E D + MST+DI TRLLDNEI+I+K + R + E + EK
Sbjct: 2 ATPMVEDTSSFEE-----DQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEK 56
Query: 65 IRENTEKIKVNKNLPYLVSNVIELLDVDPQD-TEEDGAVVDLDAQRKGKCAVIKTSTRQT 123
I+EN EKIK+NK LPYLV N++E+L+++P+D EEDGA +DLD+QRKGKC V+KTSTRQT
Sbjct: 57 IKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQT 116
Query: 124 YFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGL 183
FLPV+GLVD + LKPGDLVGVNKDSYLIL+TLP+EYD+RVKAMEVDE+PTE Y+DIGGL
Sbjct: 117 IFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGL 176
Query: 184 DKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243
+KQIQEL+EA+VLPMTHKE+F LG++PPKGVLLYGPPGTGKTL+ARACAAQT +TFLKL
Sbjct: 177 EKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 236
Query: 244 AGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTML 303
AGPQLVQMFIGDGAKLVRDAF LAKEKAP IIFIDE+DAIGTKRFDSE +GDREVQRTML
Sbjct: 237 AGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 296
Query: 304 ELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSR 363
ELLNQLDGFSS IKVIAATNR DILDPAL+RSGRLDRKIEFPHP EEARARI+QIHSR
Sbjct: 297 ELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSR 356
Query: 364 KMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKK 423
KMNV PDVN+EEL+RSTDDFNGAQ KAVCVEAGM+ALRR A V HEDF + I++VQAKK
Sbjct: 357 KMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 416
Query: 424 KANLNYYA 431
KA+LNYYA
Sbjct: 417 KASLNYYA 424
>sp|P46465|PRS6A_ORYSJ 26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp.
japonica GN=TBP1 PE=2 SV=2
Length = 429
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/405 (79%), Positives = 369/405 (91%), Gaps = 1/405 (0%)
Query: 28 MSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIE 87
MST+DI TRLLDNE +++K E+ R + E+++ EKI+EN EKIK+NK LPYLV N++E
Sbjct: 25 MSTEDIVRATRLLDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPYLVGNIVE 84
Query: 88 LLDVDPQD-TEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVN 146
+L+++P+D EEDGA +DLD+QRKGKC V+KTSTRQT FLPVIGLVD EKLKPGDLVGVN
Sbjct: 85 ILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGLVDPEKLKPGDLVGVN 144
Query: 147 KDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVN 206
KDSYLIL+TLP+EYD+RVKAMEVDE+PTE Y+DIGGL+KQIQEL+EA+VLPMTHK++F
Sbjct: 145 KDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQK 204
Query: 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFAL 266
LGI+PPKGVLLYGPPGTGKTL+ARACAAQT +TFLKLAGPQLVQMFIGDGAKLVRDAF L
Sbjct: 205 LGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQL 264
Query: 267 AKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326
AKEK+P IIFIDE+DAIGTKRFDSE +GDREVQRTMLELLNQLDGFSS IKVIAATNR
Sbjct: 265 AKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNR 324
Query: 327 VDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGA 386
DILDPAL+RSGRLDRKIEFPHP+EEARARI+QIHSRKMNV+PDVN+EEL+RSTDDFNGA
Sbjct: 325 ADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGA 384
Query: 387 QCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKANLNYYA 431
Q KAVCVEAGM+ALRR A VTHEDF + I++VQAKKK++LNYYA
Sbjct: 385 QLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA 429
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog OS=Brassica campestris
GN=TBP1 PE=2 SV=1
Length = 424
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/428 (75%), Positives = 374/428 (87%), Gaps = 6/428 (1%)
Query: 5 ATATLEDSSIWEGEESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEK 64
AT +ED+S +E D + MST+DI TRLL+NEI+I+K + R + E + EK
Sbjct: 2 ATPMVEDTSSFEE-----DQLASMSTEDIVRATRLLENEIRILKEDAQRTNLECDSYKEK 56
Query: 65 IRENTEKIKVNKNLPYLVSNVIELLDVDPQD-TEEDGAVVDLDAQRKGKCAVIKTSTRQT 123
I+EN EKIK+NK LPYLV N++E+L+++P+D EEDGA +DLD+QRKGKC V+KTSTRQT
Sbjct: 57 IKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQT 116
Query: 124 YFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGL 183
FLPV+GLVD + LKPGDLVGVNKDSYLIL+TLP+EYD+RVKAMEVDE+PTE Y+DIGGL
Sbjct: 117 IFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGL 176
Query: 184 DKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243
+KQIQEL+EA+VLPMTHKE+F LG++PPKGVLLYGPPGTGKTL+ARACAAQT +TFLKL
Sbjct: 177 EKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 236
Query: 244 AGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTML 303
AGPQLVQMFIGDGAKLVRDAF LAKEKAP IIFIDE+DAIGTKRFDSE +GDREVQRTML
Sbjct: 237 AGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 296
Query: 304 ELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSR 363
ELLNQLDGFSS IKVIAATNR DILDPAL+RSGRLDRKIEFPHP EEARARI+QIHSR
Sbjct: 297 ELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSR 356
Query: 364 KMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKK 423
KMNV PDVN+EEL+RSTDDFNGAQ KAVCVEAGM+ALRR A V HEDF + I++VQAKK
Sbjct: 357 KMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 416
Query: 424 KANLNYYA 431
KA+LNYYA
Sbjct: 417 KASLNYYA 424
>sp|O04019|PS6AB_ARATH 26S protease regulatory subunit 6A homolog B OS=Arabidopsis
thaliana GN=RPT5B PE=1 SV=3
Length = 423
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/428 (75%), Positives = 372/428 (86%), Gaps = 7/428 (1%)
Query: 5 ATATLEDSSIWEGEESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEK 64
ATA ED+S GD + M+TDDI +RLL NEI+I+K E R + +L++ EK
Sbjct: 2 ATAMAEDTSFE------GDQLASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEK 55
Query: 65 IRENTEKIKVNKNLPYLVSNVIELLDVDPQD-TEEDGAVVDLDAQRKGKCAVIKTSTRQT 123
I+EN EKIK+NK LPYLV N++E+L++ P+D EEDGA +DLD+QRKGKC V+KTSTRQT
Sbjct: 56 IKENQEKIKLNKQLPYLVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQT 115
Query: 124 YFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGL 183
FLPV+GLVD + LKPGDLVGVNKDSYLIL+TLP+EYD+RVKAMEVDE+PTE Y+DIGGL
Sbjct: 116 IFLPVVGLVDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGL 175
Query: 184 DKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243
+KQIQEL+EA+VLPMTHKE+F LGI+PPKGVLLYGPPGTGKTL+ARACAAQT +TFLKL
Sbjct: 176 EKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235
Query: 244 AGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTML 303
AGPQLVQMFIGDGAKLVRDAF LAKEK+P IIFIDE+DAIGTKRFDSE +GDREVQRTML
Sbjct: 236 AGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295
Query: 304 ELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSR 363
ELLNQLDGFSS IKVIAATNR DILDPAL+RSGRLDRKIEFPHP EEAR RI+QIHSR
Sbjct: 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSR 355
Query: 364 KMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKK 423
KMNV+ DVN+EEL+RSTDDFNGAQ KAVCVEAGM+ALRR A V HEDF + I++VQAKK
Sbjct: 356 KMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 415
Query: 424 KANLNYYA 431
KA+LNYYA
Sbjct: 416 KASLNYYA 423
>sp|P54776|PRS6A_SOLLC 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum
GN=TBP1 PE=2 SV=1
Length = 423
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/428 (75%), Positives = 374/428 (87%), Gaps = 7/428 (1%)
Query: 5 ATATLEDSSIWEGEESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEK 64
AT EDS+ + D + MST+DI +RLLDNEI+I+K E+ R + EL + EK
Sbjct: 2 ATPMAEDSNFED------DQLHAMSTEDIIRASRLLDNEIRIIKEELQRTNLELDSFKEK 55
Query: 65 IRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEE-DGAVVDLDAQRKGKCAVIKTSTRQT 123
I+EN EKIK+NK LPYLV N++E+L+++P++ E DGA +DLD+QRKGKC V+KTSTRQT
Sbjct: 56 IKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANIDLDSQRKGKCVVLKTSTRQT 115
Query: 124 YFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGL 183
FLPV+GLVD + LKPGDLVGVNKDSYLIL+TLP+EYD+RVKAMEVDE+PTE Y DIGGL
Sbjct: 116 IFLPVVGLVDPDNLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYHDIGGL 175
Query: 184 DKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243
+KQIQEL+EA+VLPMTH+E+F LG++PPKGVLLYGPPGTGKTL+ARACAAQT +TFLKL
Sbjct: 176 EKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKL 235
Query: 244 AGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTML 303
AGPQLVQMFIGDGAKLVRDAF LAKEK+P IIFIDE+DAIGTKRFDSE +GDREVQRTML
Sbjct: 236 AGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTML 295
Query: 304 ELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSR 363
ELLNQLDGFSS IKVIAATNR DILDPAL+RSGRLDRKIEFPHP EEARARI+QIHSR
Sbjct: 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSR 355
Query: 364 KMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKK 423
KMNV+PDVN+EEL+RSTDDFNGAQ KAVCVEAGM+ALRR A VTHEDF + I++VQAKK
Sbjct: 356 KMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKK 415
Query: 424 KANLNYYA 431
KA+LNYYA
Sbjct: 416 KASLNYYA 423
>sp|Q54PN7|PRS6A_DICDI 26S protease regulatory subunit 6A homolog OS=Dictyostelium
discoideum GN=psmC3 PE=1 SV=1
Length = 421
Score = 610 bits (1573), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/432 (68%), Positives = 359/432 (83%), Gaps = 12/432 (2%)
Query: 1 MSGPATATLEDS-SIWEGEESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQ 59
MS T T ++S E E + D+I +M+ D++N + +LL+NE K+++SE + E+
Sbjct: 1 MSNKRTTTKDESLPQAEKEAVIPDEIFQMTADEVNRKAKLLENETKVLRSEHISKHLEMD 60
Query: 60 AQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTS 119
+ ++I+EN +K++VN LP+LV+NV+E++D+ V+D + Q KC V+K S
Sbjct: 61 SIQKRIKENNDKLQVNTQLPHLVANVVEIIDM----------VLDGETQ-PSKCVVVKAS 109
Query: 120 TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSD 179
TRQT FL G+VD +KL+PGDLVG+NKDSY+IL+TLP EYD+RVKAME+DE+PTE+YSD
Sbjct: 110 TRQTIFLAYPGIVDVDKLRPGDLVGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSD 169
Query: 180 IGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST 239
IGGLDKQIQEL+EAVVLPMTHKE+F ++GI+PPKGVL+YGPPGTGKTLLARACAAQT ST
Sbjct: 170 IGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKTLLARACAAQTNST 229
Query: 240 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQ 299
+LKLAGPQLVQMFIGDGAKLVRDAFALAKEK P IIFIDELDAIGTKRFDSE +GDREVQ
Sbjct: 230 YLKLAGPQLVQMFIGDGAKLVRDAFALAKEKGPTIIFIDELDAIGTKRFDSEVSGDREVQ 289
Query: 300 RTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQ 359
RTMLELLNQLDGFSS A+IKVIAATNR+DILDPALLRSGRLDRKIEFP PNEEARA I+Q
Sbjct: 290 RTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQ 349
Query: 360 IHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEV 419
IHSRKMNVS DVN++EL+RS++DFNGAQ KAVCVEAGMIALRRG + H DF++ +EV
Sbjct: 350 IHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRRGGTELIHNDFVEGCVEV 409
Query: 420 QAKKKANLNYYA 431
AKKK L YYA
Sbjct: 410 MAKKKKTLEYYA 421
>sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tbp1 PE=3 SV=1
Length = 438
Score = 610 bits (1572), Expect = e-174, Method: Compositional matrix adjust.
Identities = 295/421 (70%), Positives = 351/421 (83%), Gaps = 1/421 (0%)
Query: 12 SSIWEGEESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEK 71
SS EG + + +IL D++NSRTRLL+N+IK+MKSE R++HE EKI+EN EK
Sbjct: 18 SSNNEGLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEK 77
Query: 72 IKVNKNLPYLVSNVIELLDVDPQDTE-EDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIG 130
I NK LPYLV NV+E+LD+ P + + ++ A + +A R GK AVIKTSTRQT FLP+IG
Sbjct: 78 ISNNKMLPYLVGNVVEILDMQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLIG 137
Query: 131 LVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQEL 190
LV+ E+L PGDL+GVNKDSYLI++ LP+EYD+RVKAMEVDE+PTE+YSDIGGL KQI+EL
Sbjct: 138 LVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEEL 197
Query: 191 IEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250
EA+VLPM +KF LG++PPKG L++GPPGTGKTLLARACAAQ+ +TFLKLA PQLVQ
Sbjct: 198 FEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQ 257
Query: 251 MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310
MFIGDGAKLVRDAFALAKEK+PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD
Sbjct: 258 MFIGDGAKLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 317
Query: 311 GFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD 370
GFSS +KVIAATNRVD LDPALLRSGRLDRK+EFP PNEEAR I++IHSRKM + D
Sbjct: 318 GFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDD 377
Query: 371 VNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKANLNYY 430
+N+EEL+RSTD++NGA K+VCVEAGMIALR+G + HE FMD I+EVQ +K L Y+
Sbjct: 378 INWEELARSTDEYNGAMLKSVCVEAGMIALRQGDTKINHEHFMDGILEVQMRKSKTLQYF 437
Query: 431 A 431
A
Sbjct: 438 A 438
>sp|P33297|PRS6A_YEAST 26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPT5 PE=1 SV=3
Length = 434
Score = 608 bits (1568), Expect = e-173, Method: Compositional matrix adjust.
Identities = 293/433 (67%), Positives = 363/433 (83%), Gaps = 8/433 (1%)
Query: 7 ATLE--DSSIWEGEESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEK 64
ATLE D+ G++ L +IL +ST ++ +R +LLDNEI+I +SE+ R+SHE EK
Sbjct: 2 ATLEELDAQTLPGDDELDQEILNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEK 61
Query: 65 IRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEED------GAVVDLDAQRKGKCAVIKT 118
I++N EKIK N+ LPYLV+NV+E++D++ + +E+ G V+LD GK AV+KT
Sbjct: 62 IKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKT 121
Query: 119 STRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYS 178
S+RQT FLP++GLVD +KLKP DLVGVNKDSYLIL+TLP+E+D+RVKAMEVDE+PTE YS
Sbjct: 122 SSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYS 181
Query: 179 DIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS 238
D+GGLDKQI+EL+EA+VLPM +KF ++GI+ PKG L+YGPPGTGKTLLARACAAQT +
Sbjct: 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA 241
Query: 239 TFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREV 298
TFLKLA PQLVQM+IG+GAKLVRDAFALAKEKAP IIFIDELDAIGTKRFDSEK+GDREV
Sbjct: 242 TFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREV 301
Query: 299 QRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIM 358
QRTMLELLNQLDGFSS +KV+AATNRVD+LDPALLRSGRLDRKIEFP P+E++RA+I+
Sbjct: 302 QRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQIL 361
Query: 359 QIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIME 418
QIHSRKM D+N++EL+RSTD+FNGAQ KAV VEAGMIALR G + V HEDF++ I E
Sbjct: 362 QIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISE 421
Query: 419 VQAKKKANLNYYA 431
VQA+K ++++YA
Sbjct: 422 VQARKSKSVSFYA 434
>sp|Q8SR13|PRS6A_ENCCU 26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPT5 PE=1 SV=1
Length = 401
Score = 496 bits (1278), Expect = e-140, Method: Compositional matrix adjust.
Identities = 238/401 (59%), Positives = 306/401 (76%), Gaps = 22/401 (5%)
Query: 33 INSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVD 92
+ + R+L++E +I++S V I H++ +N I EN E+I++NK LPYLV NV+E+LD
Sbjct: 21 VREKIRMLNSETRILQSRVNTIKHDISTKNASIAENMERIRLNKQLPYLVGNVVEVLD-- 78
Query: 93 PQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLI 152
E G V+ STR + +LP+ GL+ +L+PGDLV ++KD+ ++
Sbjct: 79 ----EHSG--------------VVNASTRMSSYLPITGLIPNSELRPGDLVALHKDTNIV 120
Query: 153 LETLPAEYDARVKAM--EVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQ 210
E LP +YD +V M + D +P E Y DIGGL++QI+EL EA+VL +TH E+F L I+
Sbjct: 121 FEKLPPDYDMKVGGMVLKSDAKPDETYEDIGGLERQIEELNEAIVLSLTHPERFEKLNIK 180
Query: 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 270
PPKGVL+YGPPGTGKTL+ARACA++T +TFLKLAGPQLVQM+IGDGA+LVRDAFALAKE+
Sbjct: 181 PPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLVRDAFALAKER 240
Query: 271 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330
P IIFIDE+DAIG KR DS++ GDREVQRTMLELLNQLDGFSS+ ++K+IAATNRVDIL
Sbjct: 241 KPTIIFIDEIDAIGAKRSDSDQTGDREVQRTMLELLNQLDGFSSSEEVKIIAATNRVDIL 300
Query: 331 DPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKA 390
DPALLRSGRLDRKIEFP PN R RI+QIH+RKM+V DVN++EL+RST+ FNGAQCKA
Sbjct: 301 DPALLRSGRLDRKIEFPLPNTLGRKRILQIHARKMSVRDDVNFDELARSTEGFNGAQCKA 360
Query: 391 VCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKANLNYYA 431
VCVEAGM ALR+ ++ DFMD I EV ++KK+ L Y+
Sbjct: 361 VCVEAGMAALRKEKTEISQNDFMDGIQEVLSRKKSKLLYFT 401
>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster
GN=Pros26.4 PE=2 SV=2
Length = 439
Score = 357 bits (917), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 177/379 (46%), Positives = 252/379 (66%), Gaps = 20/379 (5%)
Query: 46 IMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDL 105
+M+ E +R L+ Q+EK E K+ + P V N+ E++D
Sbjct: 72 MMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIID--------------- 116
Query: 106 DAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVK 165
A++ TS +++ ++ VD ++L+PG V +N + ++ L + D V
Sbjct: 117 -----DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVT 171
Query: 166 AMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGK 225
M++++ P E Y+DIGGLD QIQE+ E+V LP+TH E + +GI+PPKGV+LYGPPGTGK
Sbjct: 172 VMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 231
Query: 226 TLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGT 285
TLLA+A A QT +TFL++ G +L+Q ++GDG KLVR+ F +A+E AP+I+FIDE+DA+GT
Sbjct: 232 TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGT 291
Query: 286 KRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIE 345
KR+DS G+RE+QRTMLELLNQLDGF S D+KVI ATNR++ LDPAL+R GR+DRKIE
Sbjct: 292 KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 351
Query: 346 FPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAA 405
FP P+E+ + RI IH+ +M ++ DVN EL + DD +GA KA+C EAG++ALR
Sbjct: 352 FPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRM 411
Query: 406 IVTHEDFMDAIMEVQAKKK 424
VT+EDF + V +KK
Sbjct: 412 KVTNEDFKKSKESVLYRKK 430
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 352 bits (904), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 187/392 (47%), Positives = 260/392 (66%), Gaps = 26/392 (6%)
Query: 36 RTRLLDNEIKIMKSEVMRISHELQAQN---EKIRENTEKIKVNKNLPYLVSNVIELLDVD 92
R + L+ E+++ + E + EL+ + EK+R + +++K P +V V E+LD
Sbjct: 57 RRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMK---KPPLIVGTVEEILD-- 111
Query: 93 PQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLI 152
DG V+ +K+ST + V VD +L+PG V +N+ S +
Sbjct: 112 ------DGRVI------------VKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAV 153
Query: 153 LETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPP 212
++ LP+E D+RV AMEVDE P Y DIGGLD+QI+E+ E V P+ E F +G++PP
Sbjct: 154 VDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVEPP 213
Query: 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAP 272
KGVLLYGPPGTGKTLLA+A A +TF++LA P+LVQ FIG+GA+LVR+ F LA+EKAP
Sbjct: 214 KGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIGEGARLVRELFELAREKAP 273
Query: 273 AIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDP 332
+IIFIDE+DAIG +R +GDREVQRT+ +LL ++DGF DIKVIAATNR DILDP
Sbjct: 274 SIIFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDPLDDIKVIAATNRKDILDP 333
Query: 333 ALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVC 392
ALLR GR DR I+ P P+EE R I +IH+R MN++ DV+ ++L++ T+ +GA KA+C
Sbjct: 334 ALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIKAIC 393
Query: 393 VEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424
EAGM+A+R IVT +DF+ A+ V KK+
Sbjct: 394 TEAGMMAIREDRDIVTMDDFLKAVDRVMGKKE 425
>sp|Q9SZD4|PRS4A_ARATH 26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis
thaliana GN=RPT2A PE=2 SV=1
Length = 443
Score = 351 bits (901), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 185/402 (46%), Positives = 259/402 (64%), Gaps = 24/402 (5%)
Query: 30 TDDINSRTRLLDNE-IK---IMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNV 85
T + RLL E IK +M+ E + L+ Q EK E+ K+ + P V N+
Sbjct: 56 TPSTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNL 115
Query: 86 IELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGV 145
EL+D + A++ +S Y++ ++ VD ++L+PG + +
Sbjct: 116 EELIDEN--------------------HAIVSSSVGPEYYVGILSFVDKDQLEPGCSILM 155
Query: 146 NKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFV 205
+ ++ L E D V M+V++ P E Y+DIGGL+ QIQE+ EAV LP+TH E +
Sbjct: 156 HNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYE 215
Query: 206 NLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFA 265
++GI+PPKGV+LYG PGTGKTLLA+A A T +TFL++ G +L+Q ++GDG KLVR+ F
Sbjct: 216 DIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFR 275
Query: 266 LAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN 325
+A + +P+I+FIDE+DA+GTKR+D+ G+RE+QRTMLELLNQLDGF S D+KVI ATN
Sbjct: 276 VADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 335
Query: 326 RVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNG 385
R++ LDPALLR GR+DRKIEFP P+ + R RI QIH+ KM +S DVN EE + D+F+G
Sbjct: 336 RIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSG 395
Query: 386 AQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKANL 427
A KA+C EAG++ALR VTH DF A +V KKK +
Sbjct: 396 ADIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFKKKEGV 437
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 351 bits (900), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 183/403 (45%), Positives = 260/403 (64%), Gaps = 24/403 (5%)
Query: 26 LRMSTDDINSRTRLLDNE-IK---IMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYL 81
L + T R +LL E IK +M+ E +R +++ EK E K+ + P
Sbjct: 49 LPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMS 108
Query: 82 VSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGD 141
V + E++D A++ TS +++ ++ VD + L+PG
Sbjct: 109 VGTLEEIID--------------------DNHAIVSTSVGSEHYVSILSFVDKDLLEPGC 148
Query: 142 LVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHK 201
V +N + ++ L + D V M+V++ P E Y+DIGGLD QIQE+ E+V LP+TH
Sbjct: 149 SVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHP 208
Query: 202 EKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVR 261
E + +GI+PPKGV+LYGPPGTGKTLLA+A A QT +TFL++ G +L+Q ++GDG KLVR
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVR 268
Query: 262 DAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321
+ F +A+E AP+I+FIDE+DAIGTKR+DS G+RE+QRTMLELLNQLDGF S D+KVI
Sbjct: 269 ELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVI 328
Query: 322 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTD 381
ATNR++ LDPAL+R GR+DRKIEFP P+E+ + RI QIH+ +M ++ DV ++L + D
Sbjct: 329 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKD 388
Query: 382 DFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424
D +GA KA+C EAG++ALR VT+EDF + V KK+
Sbjct: 389 DLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQ 431
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 351 bits (900), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 183/403 (45%), Positives = 260/403 (64%), Gaps = 24/403 (5%)
Query: 26 LRMSTDDINSRTRLLDNE-IK---IMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYL 81
L + T R +LL E IK +M+ E +R +++ EK E K+ + P
Sbjct: 49 LPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMS 108
Query: 82 VSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGD 141
V + E++D A++ TS +++ ++ VD + L+PG
Sbjct: 109 VGTLEEIID--------------------DNHAIVSTSVGSEHYVSILSFVDKDLLEPGC 148
Query: 142 LVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHK 201
V +N + ++ L + D V M+V++ P E Y+DIGGLD QIQE+ E+V LP+TH
Sbjct: 149 SVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHP 208
Query: 202 EKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVR 261
E + +GI+PPKGV+LYGPPGTGKTLLA+A A QT +TFL++ G +L+Q ++GDG KLVR
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVR 268
Query: 262 DAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321
+ F +A+E AP+I+FIDE+DAIGTKR+DS G+RE+QRTMLELLNQLDGF S D+KVI
Sbjct: 269 ELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVI 328
Query: 322 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTD 381
ATNR++ LDPAL+R GR+DRKIEFP P+E+ + RI QIH+ +M ++ DV ++L + D
Sbjct: 329 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKD 388
Query: 382 DFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424
D +GA KA+C EAG++ALR VT+EDF + V KK+
Sbjct: 389 DLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQ 431
>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1
SV=1
Length = 440
Score = 351 bits (900), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 183/403 (45%), Positives = 260/403 (64%), Gaps = 24/403 (5%)
Query: 26 LRMSTDDINSRTRLLDNE-IK---IMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYL 81
L + T R +LL E IK +M+ E +R +++ EK E K+ + P
Sbjct: 49 LPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMS 108
Query: 82 VSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGD 141
V + E++D A++ TS +++ ++ VD + L+PG
Sbjct: 109 VGTLEEIID--------------------DNHAIVSTSVGSEHYVSILSFVDKDLLEPGC 148
Query: 142 LVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHK 201
V +N + ++ L + D V M+V++ P E Y+DIGGLD QIQE+ E+V LP+TH
Sbjct: 149 SVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHP 208
Query: 202 EKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVR 261
E + +GI+PPKGV+LYGPPGTGKTLLA+A A QT +TFL++ G +L+Q ++GDG KLVR
Sbjct: 209 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVR 268
Query: 262 DAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321
+ F +A+E AP+I+FIDE+DAIGTKR+DS G+RE+QRTMLELLNQLDGF S D+KVI
Sbjct: 269 ELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVI 328
Query: 322 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTD 381
ATNR++ LDPAL+R GR+DRKIEFP P+E+ + RI QIH+ +M ++ DV ++L + D
Sbjct: 329 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKD 388
Query: 382 DFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424
D +GA KA+C EAG++ALR VT+EDF + V KK+
Sbjct: 389 DLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQ 431
>sp|Q58576|PAN_METJA Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pan PE=1 SV=1
Length = 430
Score = 351 bits (900), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 170/320 (53%), Positives = 232/320 (72%), Gaps = 3/320 (0%)
Query: 100 GAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAE 159
G VVD +RK V+K+ST ++ + V V+ + L PG V +N+ + +++ LP
Sbjct: 95 GTVVDKVGERK---VVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPEN 151
Query: 160 YDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYG 219
D R KAMEVDERP +Y DIGGL+KQ+QE+ E V LP+ H E F +GI+PPKG+LLYG
Sbjct: 152 KDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYG 211
Query: 220 PPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDE 279
PPGTGKTLLA+A A +T +TF+++ G +LV+ FIG+GA LV+D F LAKEKAP+IIFIDE
Sbjct: 212 PPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDE 271
Query: 280 LDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGR 339
+DAI KR D+ GDREVQRT+++LL ++DGF + D+K+I ATNR DILDPA+LR GR
Sbjct: 272 IDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGR 331
Query: 340 LDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399
DR IE P P+E+ R I++IH+RKMN++ DVN EE+++ T+ GA+ KA+C EAGM A
Sbjct: 332 FDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNA 391
Query: 400 LRRGAAIVTHEDFMDAIMEV 419
+R VT +DF A+ ++
Sbjct: 392 IRELRDYVTMDDFRKAVEKI 411
>sp|O28303|PAN_ARCFU Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=pan PE=1 SV=1
Length = 398
Score = 349 bits (896), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 186/385 (48%), Positives = 255/385 (66%), Gaps = 27/385 (7%)
Query: 38 RLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTE 97
R L++E K ++SE +R E++ ++R E+++ + P LV V ++L
Sbjct: 28 RRLEDEKKFIESERIRYEREVR----RLRSEVERLR---SPPLLVGVVSDIL-------- 72
Query: 98 EDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLP 157
EDG VV +K+ST + + ++ E+LKPG V +N+ + I+ LP
Sbjct: 73 EDGRVV------------VKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 120
Query: 158 AEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLL 217
D V EV+E+P Y DIGGLD QI+E+ EAV LP+ E F +GI+PPKGVLL
Sbjct: 121 TSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLL 180
Query: 218 YGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFI 277
YGPPGTGKTLLA+A A QT++TF+++ G + VQ +IG+GA+LVR+ F LAKEKAP+IIFI
Sbjct: 181 YGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFI 240
Query: 278 DELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRS 337
DELDAI +R +S+ +GDREVQRTM++LL +LDGF D+KVI ATNR+DILDPA+LR
Sbjct: 241 DELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRP 300
Query: 338 GRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGM 397
GR DR IE P P E R +I +IH+RKM ++ DV+++EL+R T+ +GA KA+C EAGM
Sbjct: 301 GRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGM 360
Query: 398 IALRRGAAIVTHEDFMDAIMEVQAK 422
A+R A VT DF AI +V K
Sbjct: 361 FAIREERAKVTMLDFTKAIEKVLKK 385
>sp|Q9SL67|PRS4B_ARATH 26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis
thaliana GN=RPT2B PE=2 SV=1
Length = 443
Score = 349 bits (895), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 184/402 (45%), Positives = 259/402 (64%), Gaps = 24/402 (5%)
Query: 30 TDDINSRTRLLDNE-IK---IMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNV 85
T + RLL E IK +M+ E + L+ Q EK E+ K+ + P V N+
Sbjct: 56 TPSTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNL 115
Query: 86 IELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGV 145
EL+D + A++ +S Y++ ++ VD ++L+PG + +
Sbjct: 116 EELIDEN--------------------HAIVSSSVGPEYYVGILSFVDKDQLEPGCSILM 155
Query: 146 NKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFV 205
+ ++ L E D V M+V++ P E Y+DIGGL+ QIQE+ EAV LP+TH E +
Sbjct: 156 HNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYE 215
Query: 206 NLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFA 265
++GI+PPKGV+LYG PGTGKTLLA+A A T +TFL++ G +L+Q ++GDG KLVR+ F
Sbjct: 216 DIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFR 275
Query: 266 LAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN 325
+A + +P+I+FIDE+DA+GTKR+D+ G+RE+QRTMLELLNQLDGF S D+KVI ATN
Sbjct: 276 VADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATN 335
Query: 326 RVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNG 385
R++ LDPALLR GR+DRKIEFP P+ + R RI QIH+ KM ++ DVN EE + D+F+G
Sbjct: 336 RIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSG 395
Query: 386 AQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKANL 427
A KA+C EAG++ALR VTH DF A +V KKK +
Sbjct: 396 ADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKKEGV 437
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 348 bits (893), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 171/367 (46%), Positives = 244/367 (66%), Gaps = 20/367 (5%)
Query: 46 IMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDL 105
+M+ E +R +++ EK E K+ + P V + E++D
Sbjct: 73 LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIID--------------- 117
Query: 106 DAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVK 165
A++ TS +++ ++ VD + L+PG V +N + ++ L + D V
Sbjct: 118 -----DNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 172
Query: 166 AMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGK 225
M++++ P E Y+DIGGLD QIQE+ E+V LP+TH E + +GI+PPKGV+LYGPPGTGK
Sbjct: 173 VMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232
Query: 226 TLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGT 285
TLLA+A A QT +TFL++ G +L+Q ++GDG KLVR+ F +A+E P+I+FIDE+DAIGT
Sbjct: 233 TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGT 292
Query: 286 KRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIE 345
KR+DS G+RE+QRTMLELLNQLDGF S D+KVI ATNR++ LDPAL+R GR+DRKIE
Sbjct: 293 KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 352
Query: 346 FPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAA 405
FP P+E+ + RI QIH+ +M ++ DV +EL + DD +GA KA+C EAG++ALR
Sbjct: 353 FPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRM 412
Query: 406 IVTHEDF 412
VT+EDF
Sbjct: 413 KVTNEDF 419
>sp|Q9YAC7|PAN_AERPE Proteasome-activating nucleotidase OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=pan
PE=3 SV=1
Length = 409
Score = 347 bits (889), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 184/368 (50%), Positives = 255/368 (69%), Gaps = 12/368 (3%)
Query: 57 ELQAQNEKIRENT-EKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVV--DLDAQRKGKC 113
E++ +K+R T EKI + K L Y + + +LL P E AVV +D R
Sbjct: 24 EIRILKDKVRSLTKEKISLQKELEYYKNEITKLLS--PPYIE---AVVLEVIDDNR---- 74
Query: 114 AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERP 173
V+K+ST + V VDA LKPG +V +N I++ LP YD VKAMEV+ERP
Sbjct: 75 VVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERP 134
Query: 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACA 233
+ D+GGL++QI+E+ EAVVLP+ + F LGI PPKGVLL+GPPGTGKTLLA+A A
Sbjct: 135 KVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTGKTLLAKAVA 194
Query: 234 AQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKA 293
+T++TF+++ G +LV FIG+GA+LVR+ F LA+EKAP+I+FIDE+DAI +KR D +
Sbjct: 195 GETEATFIRVVGSELVNKFIGEGARLVREIFRLAREKAPSILFIDEIDAIASKRVDIGTS 254
Query: 294 GDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 353
GDREVQRTML+LL +LDGF ++KVIAATNR+D++DPA+LR GR DR IE P P+
Sbjct: 255 GDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFDRIIEVPLPSLRG 314
Query: 354 RARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413
R I+ IH+RK ++PDV+ E +++ T+ F+GA KAV VEAG A+RRG+ ++T +D +
Sbjct: 315 RLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGSRVITMDDMI 374
Query: 414 DAIMEVQA 421
A+ +V+A
Sbjct: 375 KAVEKVKA 382
>sp|P46466|PRS4_ORYSJ 26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp.
japonica GN=TBP2 PE=2 SV=2
Length = 448
Score = 346 bits (888), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 181/396 (45%), Positives = 256/396 (64%), Gaps = 24/396 (6%)
Query: 36 RTRLLDNE-IK---IMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV 91
R RLL E +K +M+ E + L+ +K E+ K+ + P V ++ E++D
Sbjct: 67 RLRLLKLERVKDYLLMEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDE 126
Query: 92 DPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYL 151
A++ +S Y++ ++ VD ++L+PG + ++
Sbjct: 127 S--------------------HAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLS 166
Query: 152 ILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQP 211
++ L E D V M+V++ P E Y+DIGGLD QIQE+ EAV LP+TH E + ++GI+P
Sbjct: 167 VVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRP 226
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 271
PKGV+LYG PGTGKTLLA+A A T +TFL++ G +L+Q ++GDG KLVR+ F +A E +
Sbjct: 227 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADELS 286
Query: 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331
P+I+FIDE+DA+GTKR+D+ G+RE+QRTMLELLNQLDGF S D+KVI ATNR++ LD
Sbjct: 287 PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLD 346
Query: 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAV 391
PALLR GR+DRKIEFP P+ + R RI QIH+ KM ++ DVN EE + D+F+GA KA+
Sbjct: 347 PALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAI 406
Query: 392 CVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKANL 427
C EAG++ALR VTH DF A +V KKK +
Sbjct: 407 CTEAGLLALRERRMKVTHADFKKAKEKVMFKKKEGV 442
>sp|Q55BV5|PRS4_DICDI 26S protease regulatory subunit 4 homolog OS=Dictyostelium
discoideum GN=psmC1 PE=1 SV=1
Length = 439
Score = 344 bits (883), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 162/312 (51%), Positives = 226/312 (72%)
Query: 114 AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERP 173
A++ ++ +++ ++ VD KL G V +N + ++ + E D V M+V++ P
Sbjct: 120 AIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAP 179
Query: 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACA 233
TE YSDIGGL+ Q+QE+ EA+ LP+TH E + +GI+PPKGV+LYG PGTGKTLLA+A A
Sbjct: 180 TESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVA 239
Query: 234 AQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKA 293
QT +TFL++ G +L+Q ++GDG KLVR+ F +A E AP+I+FIDE+DA+GTKR+DS+
Sbjct: 240 NQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTKRYDSQSG 299
Query: 294 GDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 353
G+RE+QRTMLELLNQLDGF + D+KVI ATNR++ LDPAL+R GR+DRKIEFP P+ +
Sbjct: 300 GEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKT 359
Query: 354 RARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413
+ +I +IH+ KMN+S DVN EE S DD +GA KA+C E+G++ALR VTH DF
Sbjct: 360 KRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFK 419
Query: 414 DAIMEVQAKKKA 425
A +V +K A
Sbjct: 420 KAKEKVLYRKTA 431
>sp|O16368|PRS4_CAEEL Probable 26S protease regulatory subunit 4 OS=Caenorhabditis
elegans GN=rpt-2 PE=3 SV=1
Length = 443
Score = 343 bits (881), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 179/391 (45%), Positives = 261/391 (66%), Gaps = 14/391 (3%)
Query: 34 NSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDP 93
++R RL K++KSE RI L + E I +N E++K + ++ L P
Sbjct: 58 HARCRL-----KLLKSE--RIKDYLLMEQEFI-QNQERLKPQEERQEEERAKVDELRGTP 109
Query: 94 QDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLIL 153
AV L+ + A++ T+ +++ ++ VD E+L+PG V +N ++ ++
Sbjct: 110 M------AVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVI 163
Query: 154 ETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPK 213
L + D V M++++ P E Y+D+GGLD+QIQE+ EAV LP+TH E + +GI+PPK
Sbjct: 164 GVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPK 223
Query: 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPA 273
GV+LYG PGTGKTLLA+A A QT +TFL++ G +L+Q ++GDG K+VR+ F +A+E AP+
Sbjct: 224 GVILYGCPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPS 283
Query: 274 IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPA 333
I+FIDE+DA+GTKR+DS G+RE+QRTMLELLNQLDGF S D+KV+ ATNR++ LDPA
Sbjct: 284 IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPA 343
Query: 334 LLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCV 393
L+R GR+DRKIEFP P+E+ + RI QIH+ +M + +VN EE + D+ +GA KA+C
Sbjct: 344 LIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCT 403
Query: 394 EAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424
EAG++ALR VT EDF + V +KK
Sbjct: 404 EAGLLALRERRMRVTMEDFQKSKENVLYRKK 434
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 339 bits (869), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 178/359 (49%), Positives = 242/359 (67%), Gaps = 9/359 (2%)
Query: 59 QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVD-LDAQRKGKCAVIK 117
Q ++EK T+KI+ + L L S IE L P G V D +D R +++
Sbjct: 41 QMESEKRYVETQKIRYERELRKLKSE-IEQLRSPPLVI---GTVTDVIDNSR----VIVR 92
Query: 118 TSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQY 177
+S + + L+D + LKPG +N+ S I++ LP YDA++ ME+ E P E Y
Sbjct: 93 SSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETY 152
Query: 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK 237
+IGGL+ QI+E+ EAV LP+T + F +GI PPKGVLLYGPPGTGKTLLARA A QT
Sbjct: 153 ENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTN 212
Query: 238 STFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDRE 297
+ FL++ G +LVQ +IG+GA+LVR+ F LAK++AP+IIFIDE+DAIG R DS +GDRE
Sbjct: 213 AHFLRVVGSELVQKYIGEGARLVRELFDLAKQRAPSIIFIDEIDAIGAHRNDSTTSGDRE 272
Query: 298 VQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARI 357
VQRT+++LL ++DGF + D+K++AATNR+DILD ALLR GR DR IE P P+ + R I
Sbjct: 273 VQRTLMQLLAEMDGFDNRGDVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAI 332
Query: 358 MQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416
++IH++ MN+ DVN E+SR T+ NGA +A+C+EAGM A+R V EDFM AI
Sbjct: 333 LKIHTQYMNIGEDVNLSEVSRLTEGKNGADLRAICMEAGMFAIRMERDAVNSEDFMKAI 391
>sp|Q8SQK0|PRS8_ENCCU 26S protease regulatory subunit 8 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPT6 PE=1 SV=1
Length = 453
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 175/334 (52%), Positives = 231/334 (69%), Gaps = 2/334 (0%)
Query: 96 TEEDGAVVDLDAQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILE 154
+E + V + ++ GK V +KT+ Y + V V+ ++LK G V + DSY +
Sbjct: 113 VQEPSSNVGVVVEKMGKMQVLVKTNPDGKYLVKVEPGVNYDELKAGVRVALRSDSYDVHR 172
Query: 155 TLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKG 214
LP + D V M V++ P Y IGGLD+QI+E+ E + LP+ H E F NLGI PKG
Sbjct: 173 ILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGIAQPKG 232
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAI 274
VLLYGPPGTGKTLLARA A T+ F++++G +LVQ +IG+G++LVR+ F +A+E AP+I
Sbjct: 233 VLLYGPPGTGKTLLARAVAHHTQCKFIRVSGSELVQKYIGEGSRLVRELFIMAREHAPSI 292
Query: 275 IFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPAL 334
IF+DE+D+IG+ R DS K D EVQRTMLELLNQLDGF S +IKVI ATNR+DILDPAL
Sbjct: 293 IFMDEIDSIGSTRGDSNKGSDSEVQRTMLELLNQLDGFESHNNIKVIMATNRIDILDPAL 352
Query: 335 LRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVE 394
LR+GR+DRKIEFP PNE AR I++IHSRKMN++ ++ E ++ +GA+ KAVC E
Sbjct: 353 LRTGRIDRKIEFPPPNESARLEILKIHSRKMNLTKGIDLETIASKMVGCSGAEVKAVCTE 412
Query: 395 AGMIALRRGAAIVTHEDFMDAIMEVQAKKKANLN 428
AGM ALR VT EDF A+ +V KK +LN
Sbjct: 413 AGMYALRERRVHVTQEDFEMAVHKV-LKKTGDLN 445
>sp|P40327|PRS4_YEAST 26S protease regulatory subunit 4 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT2 PE=1
SV=3
Length = 437
Score = 333 bits (854), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 160/310 (51%), Positives = 219/310 (70%)
Query: 114 AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERP 173
A++ + T Y++ ++ VD E L+PG V ++ + I+ L + D V M++D+ P
Sbjct: 118 AIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSP 177
Query: 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACA 233
TE YSDIGGL+ QIQE+ E+V LP+TH E + +GI+PPKGV+LYG PGTGKTLLA+A A
Sbjct: 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVA 237
Query: 234 AQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKA 293
QT +TFL++ G +L+Q ++GDG +L R F +A E AP+I+FIDE+DAIGTKR+DS
Sbjct: 238 NQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG 297
Query: 294 GDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 353
G+RE+QRTMLELLNQLDGF D+KVI ATN+++ LDPAL+R GR+DRKI F +P+
Sbjct: 298 GEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLST 357
Query: 354 RARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413
+ +I+ IH+ KMN+S DVN E L + DD +GA +A+C EAG++ALR VT EDF
Sbjct: 358 KKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFK 417
Query: 414 DAIMEVQAKK 423
A V K
Sbjct: 418 QAKERVMKNK 427
>sp|Q9C5U3|PRS8A_ARATH 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana
GN=RPT6A PE=2 SV=1
Length = 419
Score = 331 bits (848), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 174/378 (46%), Positives = 250/378 (66%), Gaps = 5/378 (1%)
Query: 47 MKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLD 106
+K ++ HELQ Q + N +++ +N +++ + +L + Q +E G+ V
Sbjct: 32 LKQYYLQHIHELQRQLRQKTNNLNRLEAQRNE---LNSRVRMLREELQLLQEPGSYVGEV 88
Query: 107 AQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVK 165
+ GK V +K Y + + +D K+ P V + DSY++ LP++ D V
Sbjct: 89 VKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVN 148
Query: 166 AMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGK 225
M+V++ P Y IGGLD+QI+E+ E + LP+ H E F +LGI PKGVLLYGPPGTGK
Sbjct: 149 LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGK 208
Query: 226 TLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGT 285
TLLARA A T TF++++G +LVQ +IG+G+++VR+ F +A+E AP+IIF+DE+D+IG+
Sbjct: 209 TLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 268
Query: 286 KRFDSEKA-GDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKI 344
R +S GD EVQRTMLELLNQLDGF ++ IKV+ ATNR+DILD ALLR GR+DRKI
Sbjct: 269 ARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKI 328
Query: 345 EFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA 404
EFP+PNEE+R I++IHSRKMN+ ++ ++++ + +GA+ KAVC EAGM ALR
Sbjct: 329 EFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERR 388
Query: 405 AIVTHEDFMDAIMEVQAK 422
VT EDF A+ +V K
Sbjct: 389 VHVTQEDFEMAVAKVMKK 406
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 330 bits (847), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 262/403 (65%), Gaps = 29/403 (7%)
Query: 27 RMSTDDINSRTRLLDNEIKIMKSE-----VMRISHELQAQNEKIRENTEKIKVNKNLPYL 81
+M + +T++ + E K+++ E V R + +++ +NE ++ +K+++ P L
Sbjct: 15 KMDLKEFKEKTQIAELESKVLRLELKNKDVTRENVQIKKENEILKRELDKLRI----PPL 70
Query: 82 VSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGD 141
+ G ++D +RK AV+K+ST + + + VD E + PG
Sbjct: 71 IL----------------GTILDKVNERK---AVVKSSTGPNFLVNLSQFVDPEDIVPGA 111
Query: 142 LVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHK 201
V +N+ + I+E LP E D R AME++E+P + DIGGL+ QI+++ E V LP+ +
Sbjct: 112 RVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNP 171
Query: 202 EKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVR 261
E F +GI PPKGVLLYGPPGTGKTLLA+A A +T ++F+++ G +LV+ FIG+GAKLVR
Sbjct: 172 ELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVR 231
Query: 262 DAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321
D F LAKEK+P IIFIDE+DA+ +KR +S GDREVQRT+++LL ++DGF S D+K+I
Sbjct: 232 DVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKII 291
Query: 322 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTD 381
AATNR DILDPA+LR GR DR IE P+E+ R I++IH+ KMN+ +V+ E+++ +
Sbjct: 292 AATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNLK-NVDLREVAKLAE 350
Query: 382 DFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424
+ GA KAVC EAGM A+R + +DF +AI ++ KK+
Sbjct: 351 NMVGADLKAVCTEAGMFAIREEREFIKMDDFKEAISKITGKKE 393
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 330 bits (845), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 178/381 (46%), Positives = 251/381 (65%), Gaps = 10/381 (2%)
Query: 38 RLLDNEIKIMKSEVMRISHEL-QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDT 96
R L + + M+S+ + ++ Q +++K T+KI+ + + L S IE L P
Sbjct: 19 RYLVDRVAGMESQNQELKEQIRQLESDKRYIETQKIRYEREVRKLKSE-IEHLKTPPLIV 77
Query: 97 EEDGAVVDL-DAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILET 155
G + D+ D+ R V+++S + + V V+ LK G +N+ S I+E
Sbjct: 78 ---GTITDIIDSGR----VVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEV 130
Query: 156 LPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGV 215
LP+ YD++V ME+ + PTE Y DIGGL+KQI E+ EAV LPMT + F +GI PPKGV
Sbjct: 131 LPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGV 190
Query: 216 LLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAII 275
LLYGPPGTGKTLLA+A A +T + FL G +LVQ +IG+GA+LVR+ F LAKEKAP+I+
Sbjct: 191 LLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRELFDLAKEKAPSIV 250
Query: 276 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALL 335
FIDE+DAIG R ++ +GDREVQRT+++LL +DGF D+K+I ATNR+DILD ALL
Sbjct: 251 FIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALL 310
Query: 336 RSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEA 395
R GR DR IE P P+ E R I+++H+R MN+S DV+ E++R T+ NGA+ A+C+EA
Sbjct: 311 RPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEA 370
Query: 396 GMIALRRGAAIVTHEDFMDAI 416
GM A+R+ V EDF+ A+
Sbjct: 371 GMFAIRKEHPQVDQEDFLTAL 391
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 328 bits (842), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 163/325 (50%), Positives = 230/325 (70%), Gaps = 4/325 (1%)
Query: 100 GAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAE 159
G V+D +RK AV+K+ST + + + V+ + + PG V +N+ + ++E LP E
Sbjct: 73 GTVLDRVNERK---AVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKE 129
Query: 160 YDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYG 219
D R AME++E+P + DIGGL+ QI+++ E V LP+ + E F +GI PPKGVLLYG
Sbjct: 130 KDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYG 189
Query: 220 PPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDE 279
PPGTGKTLLA+A A +T ++F+++ G +LV+ FIG+GAKLVRD F LAKEK+P IIFIDE
Sbjct: 190 PPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDE 249
Query: 280 LDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGR 339
+DA+ +KR +S GDREVQRT+++LL ++DGF S D+K+IAATNR DILDPA+LR GR
Sbjct: 250 IDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGR 309
Query: 340 LDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399
DR IE P+E+ R I +IH+ KMN+ V+ E+++ ++ GA KAVC EAGM A
Sbjct: 310 FDRIIEIAAPDEDGRLEIFKIHTDKMNIK-SVDLREIAKMAENMVGADIKAVCTEAGMFA 368
Query: 400 LRRGAAIVTHEDFMDAIMEVQAKKK 424
+R G VT +DF +A+++V KK+
Sbjct: 369 IREGREYVTTKDFKEALLKVTGKKE 393
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 328 bits (841), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 178/404 (44%), Positives = 264/404 (65%), Gaps = 11/404 (2%)
Query: 19 ESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHEL-QAQNEKIRENTEKIKVNKN 77
E L D + R+ TD + +++L+ I ++S + + ++ QA+ +K T+KI+ +
Sbjct: 26 EQLRDQLQRIETDKQDLESQMLER-ISSLESRNLELREQIRQAEADKRYIETQKIRYERE 84
Query: 78 LPYLVSNVIELLDVDPQDTEEDGAVVDL-DAQRKGKCAVIKTSTRQTYFLPVIGLVDAEK 136
+ L S E L P G VVD+ DA R ++++S + + V+ +
Sbjct: 85 VRKLKSES-EQLRSPPLII---GTVVDVVDANR----VIVRSSAGPRFLVRSSPSVNPDD 136
Query: 137 LKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVL 196
+KPG +N+ S I+E LP+ +DA+V ME+ + P E Y+DIGGL +QI E+ EAV L
Sbjct: 137 IKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVEL 196
Query: 197 PMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDG 256
P+ E F +GI+PPKGVLLYGPPGTGKTLLA+A A +T + F+++ G +LVQ +IG+G
Sbjct: 197 PLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEG 256
Query: 257 AKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTA 316
A+LVR+ F LAK+KAP IIFIDE+DA+G R ++ +GDREVQRT+++LL +DGF +
Sbjct: 257 ARLVRELFDLAKKKAPTIIFIDEIDAVGASRTEANTSGDREVQRTLMQLLAGMDGFETRG 316
Query: 317 DIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEEL 376
D+K+I ATNR+DILD ALLR GR DR IE P P+EE R I+++H+R + + VN E+
Sbjct: 317 DVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEI 376
Query: 377 SRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQ 420
+ T+ NGA +A+C+EAGM A+R +T EDF+ AI +V+
Sbjct: 377 AGLTEGKNGADLRAICMEAGMYAIRNERPAITREDFLSAIEKVR 420
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 328 bits (841), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 173/403 (42%), Positives = 261/403 (64%), Gaps = 29/403 (7%)
Query: 27 RMSTDDINSRTRLLDNEIKIMKSE-----VMRISHELQAQNEKIRENTEKIKVNKNLPYL 81
+M + +T++ + E K+++ E + R + +++ +NE ++ +K+++ P L
Sbjct: 15 KMDLKEFKEKTQIAELESKVLRLELKNKDINRENVQIKKENEILKRELDKLRI----PPL 70
Query: 82 VSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGD 141
+ G ++D +RK AV+K+ST + + + VD E + PG
Sbjct: 71 IL----------------GTILDKVNERK---AVVKSSTGPNFLVNLSQFVDPEDIVPGA 111
Query: 142 LVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHK 201
V +N+ + I+E LP E D R AME++E+P + DIGGL+ QI+++ E V LP+ +
Sbjct: 112 RVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNP 171
Query: 202 EKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVR 261
E F +GI PPKGVLLYGPPGTGKTLLA+A A +T ++F+++ G +LV+ FIG+GAKLVR
Sbjct: 172 ELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVR 231
Query: 262 DAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321
D F LAKEK+P IIFIDE+DA+ +KR +S GDREVQRT+++LL ++DGF S D+K+I
Sbjct: 232 DVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKII 291
Query: 322 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTD 381
AATNR DILDPA+LR GR DR IE P+E+ R I++IH+ KMN+ V+ E+++ +
Sbjct: 292 AATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNLK-GVDLREVAKIAE 350
Query: 382 DFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424
+ GA KAVC EAGM A+R + +DF +AI ++ KK+
Sbjct: 351 NMVGADLKAVCTEAGMFAIREEREFIKMDDFREAISKITGKKE 393
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 327 bits (839), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 173/403 (42%), Positives = 261/403 (64%), Gaps = 29/403 (7%)
Query: 27 RMSTDDINSRTRLLDNEIKIMKSE-----VMRISHELQAQNEKIRENTEKIKVNKNLPYL 81
+M + +T++ + E K+++ E + R + +++ +NE ++ +K+++ P L
Sbjct: 15 KMDLKEFKEKTQIAELESKVLRLELKNKDISRENVQIKKENEILKRELDKLRI----PPL 70
Query: 82 VSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGD 141
+ G ++D +RK AV+K+ST + + + VD E + PG
Sbjct: 71 IL----------------GTILDRVNERK---AVVKSSTGPNFLVNLSQFVDPEDIVPGA 111
Query: 142 LVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHK 201
V +N+ + I+E LP E D R AME++E+P + DIGGL+ QI+++ E V LP+ +
Sbjct: 112 RVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNP 171
Query: 202 EKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVR 261
E F +GI PPKGVLLYGPPGTGKTLLA+A A +T ++F+++ G +LV+ FIG+GAKLVR
Sbjct: 172 ELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVR 231
Query: 262 DAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321
D F LAKEK+P IIFIDE+DA+ +KR +S GDREVQRT+++LL ++DGF S D+K+I
Sbjct: 232 DVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKII 291
Query: 322 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTD 381
AATNR DILDPA+LR GR DR IE P+E+ R I++IH+ KMN+ V+ E+++ +
Sbjct: 292 AATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNLK-GVDLREVAKLAE 350
Query: 382 DFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424
+ GA KAVC EAGM A+R + +DF +AI ++ KK+
Sbjct: 351 NMVGADLKAVCTEAGMFAIREEREFIKMDDFKEAISKITGKKE 393
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 327 bits (837), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 159/399 (39%), Positives = 247/399 (61%), Gaps = 20/399 (5%)
Query: 32 DINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDV 91
D+ + + L++++ + I +E + ++ E++K +++P L+ ++E++D
Sbjct: 24 DLYQKMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEEVKRIRSVPLLIGQLLEMVD- 82
Query: 92 DPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYL 151
++++++ T + ++ +D E LKP V + + S
Sbjct: 83 -------------------SNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNA 123
Query: 152 ILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQP 211
+++TLP E D+ + + DE+P+E YSDIGG D Q QE+ EAV LP+TH + +GI P
Sbjct: 124 LVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDP 183
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 271
P+GVLLYGPPGTGKT+LA+A A T + F+++ G + VQ ++G+G +LVRD F LA+E +
Sbjct: 184 PRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENS 243
Query: 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331
PAIIFIDE+DAI TKRFD++ DREVQR ++ELLNQ+DGF + ++KVI ATNR D LD
Sbjct: 244 PAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLD 303
Query: 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAV 391
PALLR GRLDRKIEFP P+ + I Q+ + KMN+S +V+ E+ D +GA+ +++
Sbjct: 304 PALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSI 363
Query: 392 CVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKANLNYY 430
C EAGM A+R+ ++ +DF K N+Y
Sbjct: 364 CQEAGMHAIRKNRYVILPKDFEKGYKASIKKNTHEFNFY 402
>sp|O18413|PRS8_DROME 26S protease regulatory subunit 8 OS=Drosophila melanogaster
GN=Pros45 PE=1 SV=2
Length = 405
Score = 326 bits (836), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 159/291 (54%), Positives = 208/291 (71%)
Query: 132 VDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELI 191
+D + P V + +SY + + LP + D V M V++ P Y +GGLDKQI+E+
Sbjct: 102 IDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 161
Query: 192 EAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251
E + LP+ H E F LGI PKGVLLYGPPGTGKTLLARA A T+ TF++++G +LVQ
Sbjct: 162 EVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQK 221
Query: 252 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 311
FIG+G+++VR+ F +A+E AP+IIF+DE+D+IG+ R +S GD EVQRTMLELLNQLDG
Sbjct: 222 FIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDG 281
Query: 312 FSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDV 371
F +T +IKVI ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +
Sbjct: 282 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGI 341
Query: 372 NYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAK 422
N +++ +GA+ K VC EAGM ALR VT EDF A+ +V K
Sbjct: 342 NLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 392
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 326 bits (836), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 261/403 (64%), Gaps = 29/403 (7%)
Query: 27 RMSTDDINSRTRLLDNEIKIMKSE-----VMRISHELQAQNEKIRENTEKIKVNKNLPYL 81
+M + +T++ + E K+++ E + R + +++ +NE ++ +K+++ P L
Sbjct: 15 KMDLKEFKEKTQIAELESKVLRLELKNKDISRENVQIKKENEILKRELDKLRI----PPL 70
Query: 82 VSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGD 141
+ G ++D +RK AV+K+ST + + + VD + + PG
Sbjct: 71 IL----------------GTILDRVNERK---AVVKSSTGPNFLVNLSQFVDPDDIVPGA 111
Query: 142 LVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHK 201
V +N+ + I+E LP E D R AME++E+P + DIGGL+ QI+++ E V LP+ +
Sbjct: 112 RVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNP 171
Query: 202 EKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVR 261
E F +GI PPKGVLLYGPPGTGKTLLA+A A +T ++F+++ G +LV+ FIG+GAKLVR
Sbjct: 172 ELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVR 231
Query: 262 DAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321
D F LAKEK+P IIFIDE+DA+ +KR +S GDREVQRT+++LL ++DGF S D+K+I
Sbjct: 232 DVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKII 291
Query: 322 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTD 381
AATNR DILDPA+LR GR DR IE P+E+ R I++IH+ KMN+ V+ E+++ +
Sbjct: 292 AATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNLK-GVDLREVAKIAE 350
Query: 382 DFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424
+ GA KAVC EAGM A+R + +DF +AI ++ KK+
Sbjct: 351 NMVGADLKAVCTEAGMFAIREEREFIKMDDFREAITKITGKKE 393
>sp|Q94BQ2|PRS8B_ARATH 26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana
GN=RPT6B PE=2 SV=1
Length = 419
Score = 326 bits (835), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 172/368 (46%), Positives = 244/368 (66%), Gaps = 5/368 (1%)
Query: 57 ELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAV- 115
ELQ + N +++ +N +++ + +L + Q +E G+ V + GK V
Sbjct: 42 ELQRLQREKSYNLNRLEAQRNE---LNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVL 98
Query: 116 IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTE 175
+K Y + + +D KL P V + DSY++ LP++ D V M+V++ P
Sbjct: 99 VKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDS 158
Query: 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ 235
Y IGGLD+QI+E+ E + LP+ H E F +LGI PKGVLLYGPPGTGKTLLARA A
Sbjct: 159 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHH 218
Query: 236 TKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKA-G 294
T TF++++G +LVQ +IG+G+++VR+ F +A+E AP+IIF+DE+D+IG+ R +S G
Sbjct: 219 TDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNG 278
Query: 295 DREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEAR 354
D EVQRTMLELLNQLDGF ++ IKV+ ATNR+DILD ALLR GR+DRKIEFP+PNEE+R
Sbjct: 279 DSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESR 338
Query: 355 ARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMD 414
I++IHSRKMN+ ++ ++++ + +GA+ KAVC EAGM ALR VT EDF
Sbjct: 339 FDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEM 398
Query: 415 AIMEVQAK 422
A+ +V K
Sbjct: 399 AVAKVMKK 406
>sp|B8GGN4|PAN_METPE Proteasome-activating nucleotidase OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3
SV=1
Length = 412
Score = 325 bits (833), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 157/317 (49%), Positives = 223/317 (70%), Gaps = 3/317 (0%)
Query: 100 GAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAE 159
G V DL + + ++++S + + + ++ E++KPG +N+ S I+E LP
Sbjct: 78 GTVTDLIDENR---VIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTN 134
Query: 160 YDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYG 219
YDA++ MEV E P+E+Y +IGGL+KQI E+ EAV LP+ E F +GI+PPKGVLL+G
Sbjct: 135 YDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHG 194
Query: 220 PPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDE 279
PPGTGKTLLARA A QT++ FL++ G +LVQ +IG+GA+LVR+ F LAK+K+P+IIFIDE
Sbjct: 195 PPGTGKTLLARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRELFELAKKKSPSIIFIDE 254
Query: 280 LDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGR 339
+DAIG R +S +GDREV RT+++LL ++DGFS+ D+++I ATNR+DILD ALLR GR
Sbjct: 255 IDAIGASRTESNTSGDREVHRTLMQLLAEMDGFSNRGDVRIIGATNRIDILDRALLRPGR 314
Query: 340 LDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399
DR IE P P+ E R I+ IH MN+ V+ +++ TD NGA +++C+EAGM A
Sbjct: 315 FDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGADLRSICMEAGMFA 374
Query: 400 LRRGAAIVTHEDFMDAI 416
+R +VT EDF +I
Sbjct: 375 IRSDHEMVTLEDFEQSI 391
>sp|P62198|PRS8_RAT 26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5
PE=1 SV=1
Length = 406
Score = 325 bits (833), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 163/311 (52%), Positives = 212/311 (68%)
Query: 112 KCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDE 171
K ++K + + V +D + P V + DSY + + LP + D V M V++
Sbjct: 83 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEK 142
Query: 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
P Y IGGLDKQI+E+ E + LP+ H E F LGI PKGVLLYGPPGTGKTLLARA
Sbjct: 143 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202
Query: 232 CAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSE 291
A T TF++++G +LVQ FIG+GA++VR+ F +A+E AP+IIF+DE+D+IG+ R +
Sbjct: 203 VAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGG 262
Query: 292 KAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE 351
GD EVQRTMLELLNQLDGF +T +IKVI ATNR+DILD ALLR GR+DRKIEFP PNE
Sbjct: 263 SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNE 322
Query: 352 EARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411
EAR I++IHSRKMN++ +N +++ +GA+ K VC EAGM ALR VT ED
Sbjct: 323 EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 382
Query: 412 FMDAIMEVQAK 422
F A+ +V K
Sbjct: 383 FEMAVAKVMQK 393
>sp|P62197|PRS8_PIG 26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1
Length = 406
Score = 325 bits (833), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 163/311 (52%), Positives = 212/311 (68%)
Query: 112 KCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDE 171
K ++K + + V +D + P V + DSY + + LP + D V M V++
Sbjct: 83 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEK 142
Query: 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
P Y IGGLDKQI+E+ E + LP+ H E F LGI PKGVLLYGPPGTGKTLLARA
Sbjct: 143 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202
Query: 232 CAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSE 291
A T TF++++G +LVQ FIG+GA++VR+ F +A+E AP+IIF+DE+D+IG+ R +
Sbjct: 203 VAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGG 262
Query: 292 KAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE 351
GD EVQRTMLELLNQLDGF +T +IKVI ATNR+DILD ALLR GR+DRKIEFP PNE
Sbjct: 263 SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNE 322
Query: 352 EARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411
EAR I++IHSRKMN++ +N +++ +GA+ K VC EAGM ALR VT ED
Sbjct: 323 EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 382
Query: 412 FMDAIMEVQAK 422
F A+ +V K
Sbjct: 383 FEMAVAKVMQK 393
>sp|P62196|PRS8_MOUSE 26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1
SV=1
Length = 406
Score = 325 bits (833), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 163/311 (52%), Positives = 212/311 (68%)
Query: 112 KCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDE 171
K ++K + + V +D + P V + DSY + + LP + D V M V++
Sbjct: 83 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEK 142
Query: 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
P Y IGGLDKQI+E+ E + LP+ H E F LGI PKGVLLYGPPGTGKTLLARA
Sbjct: 143 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202
Query: 232 CAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSE 291
A T TF++++G +LVQ FIG+GA++VR+ F +A+E AP+IIF+DE+D+IG+ R +
Sbjct: 203 VAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGG 262
Query: 292 KAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE 351
GD EVQRTMLELLNQLDGF +T +IKVI ATNR+DILD ALLR GR+DRKIEFP PNE
Sbjct: 263 SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNE 322
Query: 352 EARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411
EAR I++IHSRKMN++ +N +++ +GA+ K VC EAGM ALR VT ED
Sbjct: 323 EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 382
Query: 412 FMDAIMEVQAK 422
F A+ +V K
Sbjct: 383 FEMAVAKVMQK 393
>sp|P62195|PRS8_HUMAN 26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1
SV=1
Length = 406
Score = 325 bits (833), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 163/311 (52%), Positives = 212/311 (68%)
Query: 112 KCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDE 171
K ++K + + V +D + P V + DSY + + LP + D V M V++
Sbjct: 83 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEK 142
Query: 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
P Y IGGLDKQI+E+ E + LP+ H E F LGI PKGVLLYGPPGTGKTLLARA
Sbjct: 143 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202
Query: 232 CAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSE 291
A T TF++++G +LVQ FIG+GA++VR+ F +A+E AP+IIF+DE+D+IG+ R +
Sbjct: 203 VAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGG 262
Query: 292 KAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE 351
GD EVQRTMLELLNQLDGF +T +IKVI ATNR+DILD ALLR GR+DRKIEFP PNE
Sbjct: 263 SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNE 322
Query: 352 EARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411
EAR I++IHSRKMN++ +N +++ +GA+ K VC EAGM ALR VT ED
Sbjct: 323 EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 382
Query: 412 FMDAIMEVQAK 422
F A+ +V K
Sbjct: 383 FEMAVAKVMQK 393
>sp|P62194|PRS8_BOVIN 26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1
Length = 406
Score = 325 bits (833), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 163/311 (52%), Positives = 212/311 (68%)
Query: 112 KCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDE 171
K ++K + + V +D + P V + DSY + + LP + D V M V++
Sbjct: 83 KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEK 142
Query: 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
P Y IGGLDKQI+E+ E + LP+ H E F LGI PKGVLLYGPPGTGKTLLARA
Sbjct: 143 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202
Query: 232 CAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSE 291
A T TF++++G +LVQ FIG+GA++VR+ F +A+E AP+IIF+DE+D+IG+ R +
Sbjct: 203 VAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGG 262
Query: 292 KAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE 351
GD EVQRTMLELLNQLDGF +T +IKVI ATNR+DILD ALLR GR+DRKIEFP PNE
Sbjct: 263 SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNE 322
Query: 352 EARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411
EAR I++IHSRKMN++ +N +++ +GA+ K VC EAGM ALR VT ED
Sbjct: 323 EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 382
Query: 412 FMDAIMEVQAK 422
F A+ +V K
Sbjct: 383 FEMAVAKVMQK 393
>sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1
Length = 402
Score = 324 bits (830), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 157/280 (56%), Positives = 204/280 (72%)
Query: 143 VGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKE 202
V + +SY + + LP + D V M V++ P Y +GGLDKQI+E+ E + LP+ H E
Sbjct: 110 VALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPE 169
Query: 203 KFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 262
F LGI PKGVLLYGPPGTGKTLLARA A T+ TF++++G +LVQ FIG+G+++VR+
Sbjct: 170 LFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRE 229
Query: 263 AFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIA 322
F +A+E AP+IIF+DE+D+IG+ R +S GD EVQRTMLELLNQLDGF +T +IKVI
Sbjct: 230 LFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 289
Query: 323 ATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDD 382
ATNR+DILDPALLR GR+DRKIEFP PNEEAR I++IHSRKMN++ +N +++
Sbjct: 290 ATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPG 349
Query: 383 FNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAK 422
+GA+ K VC EAGM ALR VT EDF A+ +V K
Sbjct: 350 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 389
>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
Length = 410
Score = 324 bits (830), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 171/391 (43%), Positives = 245/391 (62%), Gaps = 42/391 (10%)
Query: 34 NSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDP 93
N RTRL D E+K ++ E+ R + P +++ V E+LD
Sbjct: 49 NERTRL-DREVKSLRGEIERF---------------------RTPPLVIATVTEVLD--- 83
Query: 94 QDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLIL 153
D V +K++T + + +D ++L+PG V +N+ ++ I+
Sbjct: 84 -----DHRVA------------VKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIV 126
Query: 154 ETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPK 213
+ LP+E D V MEV+E+P Y IGGL++Q++E+ E V LP+ E F +GI+PPK
Sbjct: 127 DVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLKKPELFEKIGIEPPK 186
Query: 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPA 273
GVLLYGPPGTGKTLLA+A A +T +TF+K+ + V+ +IG+GA+LVR F LAKEK+P+
Sbjct: 187 GVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEKSPS 246
Query: 274 IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPA 333
IIFIDE+DA+ KR S +GDREVQRT+++LL +LDGF S ++ ++AATNR DILDPA
Sbjct: 247 IIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVGIVAATNRPDILDPA 306
Query: 334 LLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCV 393
LLR GR DR IE P PNE+ R I++IH+ M ++ +V+ E L+R TD +GA KA+C
Sbjct: 307 LLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICT 366
Query: 394 EAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424
EAGM A+R VT DFMDA+ ++ +K
Sbjct: 367 EAGMFAIRDERDEVTMADFMDAVDKIMGVEK 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,042,914
Number of Sequences: 539616
Number of extensions: 6785783
Number of successful extensions: 32614
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 1196
Number of HSP's that attempted gapping in prelim test: 29172
Number of HSP's gapped (non-prelim): 3397
length of query: 431
length of database: 191,569,459
effective HSP length: 120
effective length of query: 311
effective length of database: 126,815,539
effective search space: 39439632629
effective search space used: 39439632629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)