Query psy15151
Match_columns 431
No_of_seqs 477 out of 3352
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 21:54:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 1.8E-80 3.9E-85 587.2 39.0 371 34-424 27-397 (406)
2 KOG0652|consensus 100.0 2.1E-76 4.6E-81 536.5 32.7 419 13-431 3-424 (424)
3 KOG0727|consensus 100.0 1.5E-67 3.2E-72 476.8 29.3 384 28-431 25-408 (408)
4 KOG0726|consensus 100.0 1.7E-65 3.7E-70 471.4 22.3 363 44-426 71-433 (440)
5 KOG0728|consensus 100.0 3.3E-63 7.1E-68 448.1 33.8 374 31-424 20-393 (404)
6 PTZ00454 26S protease regulato 100.0 9E-59 2E-63 464.9 42.4 382 30-431 17-398 (398)
7 KOG0729|consensus 100.0 9.1E-58 2E-62 416.0 23.6 330 77-422 92-421 (435)
8 PTZ00361 26 proteosome regulat 100.0 1.5E-55 3.3E-60 444.2 37.6 373 34-426 57-431 (438)
9 PRK03992 proteasome-activating 100.0 1.2E-53 2.7E-58 429.5 41.7 376 31-426 4-379 (389)
10 TIGR01242 26Sp45 26S proteasom 100.0 7.8E-51 1.7E-55 407.3 37.5 360 40-419 4-363 (364)
11 KOG0730|consensus 100.0 1.8E-52 3.9E-57 422.8 23.1 252 170-424 426-679 (693)
12 KOG0651|consensus 100.0 8.3E-52 1.8E-56 384.4 19.8 355 49-424 24-378 (388)
13 KOG0733|consensus 100.0 9.5E-51 2.1E-55 404.8 24.4 252 169-423 502-773 (802)
14 KOG0734|consensus 100.0 3.9E-47 8.4E-52 373.8 21.5 243 174-420 300-542 (752)
15 TIGR03689 pup_AAA proteasome A 100.0 9.6E-45 2.1E-49 370.3 36.7 381 37-422 3-481 (512)
16 KOG0736|consensus 100.0 1.9E-46 4.2E-51 382.3 23.9 265 164-430 658-944 (953)
17 KOG0733|consensus 100.0 3.4E-45 7.5E-50 365.1 20.8 225 173-402 185-414 (802)
18 KOG0738|consensus 100.0 3.4E-44 7.4E-49 342.2 20.9 251 169-424 203-474 (491)
19 KOG0731|consensus 100.0 8.9E-44 1.9E-48 369.8 25.5 248 173-421 306-555 (774)
20 COG0465 HflB ATP-dependent Zn 100.0 4.1E-42 8.9E-47 352.1 22.8 249 172-421 144-392 (596)
21 COG1223 Predicted ATPase (AAA+ 100.0 8.1E-42 1.8E-46 310.7 20.2 246 172-425 115-361 (368)
22 KOG0735|consensus 100.0 4.9E-40 1.1E-44 332.8 24.3 232 168-402 657-888 (952)
23 KOG0739|consensus 100.0 4.9E-41 1.1E-45 310.7 15.3 235 162-402 117-353 (439)
24 TIGR01243 CDC48 AAA family ATP 100.0 5.6E-40 1.2E-44 355.7 25.4 252 171-424 446-715 (733)
25 COG0464 SpoVK ATPases of the A 100.0 9.2E-40 2E-44 340.1 24.3 249 171-422 235-486 (494)
26 TIGR01241 FtsH_fam ATP-depende 100.0 5.6E-39 1.2E-43 333.6 27.3 251 170-421 47-297 (495)
27 KOG0737|consensus 100.0 3.2E-39 7E-44 308.2 20.4 243 174-421 88-361 (386)
28 CHL00195 ycf46 Ycf46; Provisio 100.0 8.3E-38 1.8E-42 319.9 25.7 243 172-422 222-466 (489)
29 CHL00176 ftsH cell division pr 100.0 6.5E-38 1.4E-42 329.9 25.6 249 172-421 177-425 (638)
30 PRK10733 hflB ATP-dependent me 100.0 1.9E-35 4.1E-40 314.4 27.1 247 174-421 148-394 (644)
31 CHL00206 ycf2 Ycf2; Provisiona 100.0 5.5E-35 1.2E-39 322.8 23.5 212 202-422 1620-1880(2281)
32 KOG0730|consensus 100.0 8.3E-35 1.8E-39 294.8 21.4 242 173-425 180-422 (693)
33 KOG0732|consensus 100.0 2.7E-34 5.9E-39 306.1 18.2 249 172-423 259-529 (1080)
34 TIGR01243 CDC48 AAA family ATP 100.0 3E-33 6.6E-38 303.2 25.1 249 172-423 172-439 (733)
35 KOG0741|consensus 100.0 5.6E-34 1.2E-38 280.9 14.5 250 172-422 213-493 (744)
36 KOG0740|consensus 100.0 5.9E-33 1.3E-37 274.2 18.4 250 169-424 144-409 (428)
37 PLN00020 ribulose bisphosphate 100.0 4E-31 8.7E-36 255.3 22.8 217 174-396 111-348 (413)
38 COG0542 clpA ATP-binding subun 99.9 3.2E-25 7E-30 233.2 14.5 229 144-397 462-752 (786)
39 CHL00181 cbbX CbbX; Provisiona 99.9 3E-22 6.5E-27 193.5 21.9 215 175-402 20-257 (287)
40 TIGR02880 cbbX_cfxQ probable R 99.9 4.1E-22 8.9E-27 192.6 20.6 212 178-402 22-256 (284)
41 KOG0743|consensus 99.9 2.9E-22 6.2E-27 197.2 17.5 208 174-391 197-412 (457)
42 TIGR02881 spore_V_K stage V sp 99.9 3E-21 6.5E-26 184.9 21.1 212 177-402 5-241 (261)
43 PRK10865 protein disaggregatio 99.9 7.7E-22 1.7E-26 216.0 17.9 240 131-399 530-828 (857)
44 KOG0742|consensus 99.9 3.2E-21 7E-26 185.9 18.5 234 173-421 350-614 (630)
45 PF00004 AAA: ATPase family as 99.9 1.6E-21 3.4E-26 166.4 14.1 130 215-348 1-132 (132)
46 KOG0744|consensus 99.9 8.4E-22 1.8E-26 185.1 13.3 246 175-424 139-419 (423)
47 TIGR03346 chaperone_ClpB ATP-d 99.9 1.9E-21 4.1E-26 213.7 16.1 234 144-402 536-828 (852)
48 TIGR00763 lon ATP-dependent pr 99.9 1.7E-20 3.7E-25 204.4 20.7 226 174-417 316-584 (775)
49 TIGR03345 VI_ClpV1 type VI sec 99.9 6.5E-21 1.4E-25 208.2 16.7 231 144-400 537-831 (852)
50 KOG0736|consensus 99.9 5.3E-20 1.2E-24 189.4 21.3 242 177-427 400-661 (953)
51 KOG0735|consensus 99.8 4.2E-20 9.1E-25 188.6 19.3 217 211-428 430-657 (952)
52 PF05496 RuvB_N: Holliday junc 99.8 4.7E-20 1E-24 168.1 17.1 193 174-396 20-226 (233)
53 TIGR00635 ruvB Holliday juncti 99.8 1.5E-19 3.4E-24 176.9 20.7 214 176-419 2-229 (305)
54 PRK00080 ruvB Holliday junctio 99.8 2.7E-19 5.7E-24 177.0 21.4 217 174-420 21-251 (328)
55 TIGR02902 spore_lonB ATP-depen 99.8 9.2E-20 2E-24 190.4 18.9 247 140-418 27-331 (531)
56 PRK11034 clpA ATP-dependent Cl 99.8 4.4E-20 9.6E-25 198.3 16.1 234 144-399 429-715 (758)
57 KOG1051|consensus 99.8 8.5E-20 1.8E-24 194.8 15.9 305 15-363 411-785 (898)
58 COG0466 Lon ATP-dependent Lon 99.8 2E-19 4.3E-24 185.0 16.1 227 174-418 319-583 (782)
59 COG2255 RuvB Holliday junction 99.8 1.8E-18 4E-23 160.6 19.5 217 174-420 22-252 (332)
60 CHL00095 clpC Clp protease ATP 99.8 1.3E-18 2.8E-23 190.8 21.6 230 144-398 480-780 (821)
61 TIGR02639 ClpA ATP-dependent C 99.8 1.9E-19 4.2E-24 195.2 14.5 231 144-400 425-712 (731)
62 TIGR02639 ClpA ATP-dependent C 99.8 1.5E-18 3.2E-23 188.3 20.2 222 174-420 178-430 (731)
63 COG0464 SpoVK ATPases of the A 99.8 3.7E-18 8.1E-23 178.0 21.5 222 196-422 2-229 (494)
64 COG2256 MGS1 ATPase related to 99.8 1.9E-18 4.2E-23 167.6 17.2 203 174-421 20-240 (436)
65 TIGR02928 orc1/cdc6 family rep 99.8 2.2E-17 4.7E-22 165.7 22.2 225 174-421 11-276 (365)
66 KOG2004|consensus 99.8 3E-18 6.4E-23 175.5 14.9 172 174-363 407-597 (906)
67 PRK11034 clpA ATP-dependent Cl 99.8 1.2E-17 2.6E-22 179.7 20.2 222 174-420 182-434 (758)
68 PRK14956 DNA polymerase III su 99.8 4.6E-17 9.9E-22 165.0 20.0 202 173-416 13-243 (484)
69 PRK00411 cdc6 cell division co 99.8 1.7E-16 3.7E-21 160.9 23.5 226 174-421 26-284 (394)
70 PRK14962 DNA polymerase III su 99.7 5.9E-17 1.3E-21 166.3 19.5 205 173-419 9-242 (472)
71 PRK13342 recombination factor 99.7 1.6E-16 3.4E-21 162.0 20.1 198 174-419 8-219 (413)
72 PRK07003 DNA polymerase III su 99.7 1.3E-16 2.8E-21 167.5 19.8 206 173-414 11-239 (830)
73 PRK04195 replication factor C 99.7 1.1E-16 2.4E-21 166.1 19.1 208 171-416 7-222 (482)
74 PRK10787 DNA-binding ATP-depen 99.7 1.4E-17 3E-22 180.4 12.4 225 175-418 319-581 (784)
75 PRK14961 DNA polymerase III su 99.7 3.4E-16 7.3E-21 156.8 21.4 209 173-417 11-242 (363)
76 PRK12323 DNA polymerase III su 99.7 7.3E-17 1.6E-21 167.4 16.9 206 173-414 11-244 (700)
77 PRK14960 DNA polymerase III su 99.7 1.7E-16 3.7E-21 165.0 19.7 202 173-416 10-240 (702)
78 PRK05342 clpX ATP-dependent pr 99.7 1.7E-16 3.7E-21 160.1 18.3 234 178-413 71-399 (412)
79 PRK14958 DNA polymerase III su 99.7 1.4E-16 3E-21 165.2 18.1 203 173-417 11-242 (509)
80 TIGR03345 VI_ClpV1 type VI sec 99.7 3.9E-16 8.4E-21 170.9 21.7 220 174-419 183-431 (852)
81 PRK07994 DNA polymerase III su 99.7 3.8E-16 8.2E-21 164.4 20.3 202 173-416 11-241 (647)
82 PTZ00112 origin recognition co 99.7 4.7E-16 1E-20 163.9 20.5 222 176-423 753-1010(1164)
83 PRK06645 DNA polymerase III su 99.7 7.6E-16 1.6E-20 158.8 21.6 213 173-418 16-255 (507)
84 PRK14949 DNA polymerase III su 99.7 3.5E-16 7.6E-21 167.1 19.5 192 173-396 11-225 (944)
85 PRK12402 replication factor C 99.7 1.4E-15 3.1E-20 150.7 22.1 208 173-418 10-248 (337)
86 PLN03025 replication factor C 99.7 5.8E-16 1.3E-20 152.6 18.2 199 172-414 7-218 (319)
87 PRK00149 dnaA chromosomal repl 99.7 6.7E-16 1.4E-20 159.1 18.8 191 212-420 148-350 (450)
88 PRK14964 DNA polymerase III su 99.7 1.4E-15 3.1E-20 155.6 20.6 202 173-416 8-238 (491)
89 COG1474 CDC6 Cdc6-related prot 99.7 2.8E-15 6.1E-20 149.2 21.9 221 178-423 17-269 (366)
90 TIGR00362 DnaA chromosomal rep 99.7 1.1E-15 2.3E-20 155.6 19.4 191 212-420 136-338 (405)
91 PRK08691 DNA polymerase III su 99.7 1.3E-15 2.9E-20 159.8 20.1 211 173-419 11-244 (709)
92 PRK06893 DNA replication initi 99.7 1.5E-15 3.2E-20 142.6 18.1 213 169-417 7-228 (229)
93 TIGR00382 clpX endopeptidase C 99.7 7.5E-16 1.6E-20 154.7 16.9 225 176-402 75-387 (413)
94 KOG2028|consensus 99.7 4.5E-16 9.8E-21 148.8 14.3 204 174-418 134-367 (554)
95 CHL00081 chlI Mg-protoporyphyr 99.7 1E-15 2.2E-20 150.6 17.1 226 171-425 10-328 (350)
96 PRK13407 bchI magnesium chelat 99.7 7.2E-16 1.6E-20 151.4 15.9 221 174-424 4-311 (334)
97 TIGR02640 gas_vesic_GvpN gas v 99.7 1.2E-15 2.5E-20 146.2 16.9 192 211-423 20-261 (262)
98 PRK05563 DNA polymerase III su 99.7 2.9E-15 6.3E-20 157.3 21.4 201 173-415 11-240 (559)
99 PRK14951 DNA polymerase III su 99.7 2.7E-15 5.8E-20 157.7 20.7 208 173-416 11-246 (618)
100 PRK14952 DNA polymerase III su 99.7 2.4E-15 5.3E-20 157.4 20.1 208 173-415 8-240 (584)
101 PRK14957 DNA polymerase III su 99.7 3.4E-15 7.4E-20 155.0 20.5 202 174-417 12-242 (546)
102 PRK07940 DNA polymerase III su 99.7 1.1E-15 2.4E-20 153.6 16.3 188 176-389 3-212 (394)
103 PRK10865 protein disaggregatio 99.7 1.2E-15 2.7E-20 167.4 17.6 168 174-367 174-359 (857)
104 PRK14969 DNA polymerase III su 99.7 1.5E-15 3.2E-20 158.4 17.3 208 174-417 12-242 (527)
105 CHL00095 clpC Clp protease ATP 99.7 2.9E-15 6.4E-20 164.5 20.1 201 174-400 175-402 (821)
106 PHA02544 44 clamp loader, smal 99.7 5.6E-15 1.2E-19 145.4 19.9 159 170-361 13-172 (316)
107 TIGR03420 DnaA_homol_Hda DnaA 99.7 5.8E-15 1.3E-19 138.1 19.0 203 174-416 11-225 (226)
108 PRK14963 DNA polymerase III su 99.7 5E-15 1.1E-19 153.3 20.3 202 173-417 9-238 (504)
109 PRK07764 DNA polymerase III su 99.7 3.6E-15 7.8E-20 161.7 19.8 206 173-413 10-240 (824)
110 TIGR03346 chaperone_ClpB ATP-d 99.7 6.9E-15 1.5E-19 162.1 22.0 201 174-400 169-397 (852)
111 TIGR02397 dnaX_nterm DNA polym 99.7 7.1E-15 1.5E-19 146.9 20.1 203 173-417 9-240 (355)
112 TIGR00390 hslU ATP-dependent p 99.7 3.2E-15 6.8E-20 148.4 17.0 243 178-422 12-433 (441)
113 PRK08903 DnaA regulatory inact 99.7 1.9E-14 4.2E-19 134.9 21.4 202 172-417 12-224 (227)
114 PRK13341 recombination factor 99.6 5.8E-15 1.3E-19 158.3 19.8 203 174-418 24-246 (725)
115 PRK14959 DNA polymerase III su 99.6 6.9E-15 1.5E-19 153.6 19.7 202 173-416 11-241 (624)
116 PRK07133 DNA polymerase III su 99.6 1E-14 2.2E-19 154.5 21.2 207 173-415 13-239 (725)
117 PRK05896 DNA polymerase III su 99.6 6.6E-15 1.4E-19 153.1 19.4 201 173-415 11-240 (605)
118 PRK14953 DNA polymerase III su 99.6 1.8E-14 3.8E-19 148.8 21.6 208 173-416 11-241 (486)
119 TIGR02903 spore_lon_C ATP-depe 99.6 2.2E-14 4.8E-19 152.3 22.9 218 174-420 150-431 (615)
120 PRK14965 DNA polymerase III su 99.6 8E-15 1.7E-19 154.7 19.4 201 173-415 11-240 (576)
121 PRK14088 dnaA chromosomal repl 99.6 1.1E-14 2.3E-19 149.2 19.3 190 213-420 131-333 (440)
122 PRK05201 hslU ATP-dependent pr 99.6 4.3E-15 9.2E-20 147.6 15.1 244 177-422 14-435 (443)
123 PRK14086 dnaA chromosomal repl 99.6 2.5E-14 5.5E-19 148.8 21.3 191 213-421 315-517 (617)
124 PRK09111 DNA polymerase III su 99.6 3.1E-14 6.8E-19 149.8 21.8 208 174-417 20-255 (598)
125 PRK08084 DNA replication initi 99.6 5E-14 1.1E-18 132.8 20.7 207 171-417 15-234 (235)
126 PRK14970 DNA polymerase III su 99.6 3.5E-14 7.6E-19 142.7 20.9 209 173-417 12-231 (367)
127 PRK08451 DNA polymerase III su 99.6 2.3E-14 4.9E-19 148.1 19.8 201 173-415 9-238 (535)
128 TIGR02442 Cob-chelat-sub cobal 99.6 8.1E-15 1.8E-19 156.5 17.1 220 176-425 2-310 (633)
129 TIGR02030 BchI-ChlI magnesium 99.6 1.4E-14 3E-19 142.6 17.2 221 176-425 2-315 (337)
130 PRK12422 chromosomal replicati 99.6 5.9E-14 1.3E-18 143.5 21.6 192 213-421 142-345 (445)
131 KOG0989|consensus 99.6 1.5E-14 3.3E-19 136.0 15.3 174 173-381 31-221 (346)
132 PRK06647 DNA polymerase III su 99.6 2.9E-14 6.3E-19 149.4 19.2 208 173-416 11-241 (563)
133 PRK00440 rfc replication facto 99.6 5.5E-14 1.2E-18 138.3 20.0 201 173-417 12-224 (319)
134 PRK06305 DNA polymerase III su 99.6 5.8E-14 1.3E-18 144.0 20.7 207 174-416 13-243 (451)
135 PRK14955 DNA polymerase III su 99.6 3E-14 6.4E-19 144.4 17.9 211 174-416 12-254 (397)
136 COG1224 TIP49 DNA helicase TIP 99.6 6.9E-14 1.5E-18 133.8 19.0 132 272-423 292-436 (450)
137 PRK05642 DNA replication initi 99.6 1.7E-13 3.8E-18 128.9 21.5 180 212-417 45-233 (234)
138 PF05673 DUF815: Protein of un 99.6 9.4E-14 2E-18 128.6 18.3 169 171-368 20-213 (249)
139 PRK14954 DNA polymerase III su 99.6 1.5E-13 3.3E-18 144.9 21.3 212 173-416 11-254 (620)
140 COG3829 RocR Transcriptional r 99.6 7.2E-15 1.6E-19 148.2 10.3 211 173-413 240-491 (560)
141 PRK08727 hypothetical protein; 99.6 5.2E-13 1.1E-17 125.7 21.9 179 213-418 42-230 (233)
142 PRK14948 DNA polymerase III su 99.6 2.7E-13 5.9E-18 143.6 21.6 190 174-395 12-226 (620)
143 PRK14087 dnaA chromosomal repl 99.6 2.2E-13 4.9E-18 139.7 19.7 190 213-420 142-349 (450)
144 PRK14950 DNA polymerase III su 99.6 3.5E-13 7.6E-18 142.9 21.4 207 173-415 11-241 (585)
145 TIGR00764 lon_rel lon-related 99.6 1.6E-13 3.6E-18 145.3 18.7 137 273-422 219-394 (608)
146 COG2812 DnaX DNA polymerase II 99.5 1.2E-13 2.5E-18 141.4 16.6 208 173-416 11-241 (515)
147 TIGR00368 Mg chelatase-related 99.5 2.1E-13 4.5E-18 140.9 17.9 212 175-417 189-497 (499)
148 PRK14971 DNA polymerase III su 99.5 7.3E-13 1.6E-17 140.4 21.9 201 174-416 13-243 (614)
149 PRK13531 regulatory ATPase Rav 99.5 5.3E-13 1.1E-17 135.2 19.4 222 175-425 17-289 (498)
150 cd00009 AAA The AAA+ (ATPases 99.5 2.6E-13 5.7E-18 116.5 14.6 141 182-348 2-151 (151)
151 TIGR02974 phageshock_pspF psp 99.5 9.8E-14 2.1E-18 136.9 13.2 193 180-399 1-233 (329)
152 PRK06620 hypothetical protein; 99.5 8E-13 1.7E-17 122.6 18.3 164 213-416 45-213 (214)
153 PF00308 Bac_DnaA: Bacterial d 99.5 6.1E-13 1.3E-17 123.9 17.2 170 213-399 35-216 (219)
154 TIGR01817 nifA Nif-specific re 99.5 6.6E-14 1.4E-18 147.4 12.1 210 174-413 192-439 (534)
155 COG2204 AtoC Response regulato 99.5 1.4E-13 3.1E-18 138.9 13.3 207 175-412 138-384 (464)
156 TIGR01650 PD_CobS cobaltochela 99.5 9.1E-14 2E-18 134.8 11.3 140 211-364 63-235 (327)
157 COG3604 FhlA Transcriptional r 99.5 5.7E-14 1.2E-18 139.9 9.8 198 174-399 219-456 (550)
158 COG0714 MoxR-like ATPases [Gen 99.5 1.6E-12 3.6E-17 128.6 19.5 214 178-423 24-300 (329)
159 COG0593 DnaA ATPase involved i 99.5 2.3E-12 4.9E-17 128.4 20.3 194 211-422 112-316 (408)
160 COG1221 PspF Transcriptional r 99.5 1.1E-13 2.3E-18 137.4 10.1 201 174-400 74-310 (403)
161 TIGR02031 BchD-ChlD magnesium 99.5 2.2E-13 4.7E-18 144.1 13.0 197 212-425 16-264 (589)
162 PRK15424 propionate catabolism 99.5 2.7E-13 5.9E-18 140.9 13.4 209 175-412 216-478 (538)
163 TIGR02329 propionate_PrpR prop 99.5 3.5E-13 7.5E-18 140.2 13.6 214 174-414 208-465 (526)
164 PRK11608 pspF phage shock prot 99.5 4.3E-13 9.3E-18 132.4 13.6 197 176-399 4-240 (326)
165 PRK11388 DNA-binding transcrip 99.5 2.1E-13 4.6E-18 146.6 12.0 213 174-416 321-568 (638)
166 PHA02244 ATPase-like protein 99.5 1.5E-12 3.4E-17 127.7 16.8 125 211-351 118-263 (383)
167 PF01078 Mg_chelatase: Magnesi 99.5 7.3E-14 1.6E-18 126.8 6.2 146 176-352 1-205 (206)
168 TIGR03015 pepcterm_ATPase puta 99.5 6.3E-12 1.4E-16 120.7 19.7 193 212-420 43-267 (269)
169 PF07724 AAA_2: AAA domain (Cd 99.5 2.5E-13 5.5E-18 121.4 9.2 110 211-327 2-130 (171)
170 PRK10820 DNA-binding transcrip 99.4 6.9E-13 1.5E-17 138.8 13.6 210 173-412 199-447 (520)
171 PRK09087 hypothetical protein; 99.4 4.5E-12 9.8E-17 118.6 17.1 172 213-419 45-222 (226)
172 PF00158 Sigma54_activat: Sigm 99.4 3.7E-13 8E-18 120.0 8.0 122 180-326 1-143 (168)
173 PRK05022 anaerobic nitric oxid 99.4 1.5E-12 3.4E-17 136.1 12.8 198 176-400 185-421 (509)
174 COG1239 ChlI Mg-chelatase subu 99.4 4.3E-12 9.2E-17 125.1 15.0 225 174-430 13-333 (423)
175 smart00350 MCM minichromosome 99.4 8.6E-12 1.9E-16 130.3 17.7 194 213-422 237-507 (509)
176 PRK09862 putative ATP-dependen 99.4 8.6E-12 1.9E-16 128.5 17.2 214 175-419 188-492 (506)
177 PRK09112 DNA polymerase III su 99.4 1.1E-11 2.4E-16 123.0 16.1 180 173-384 18-234 (351)
178 PRK13765 ATP-dependent proteas 99.4 4E-12 8.8E-17 134.4 13.4 133 273-418 228-399 (637)
179 PRK07471 DNA polymerase III su 99.4 1.7E-11 3.7E-16 122.4 16.9 159 173-362 14-213 (365)
180 COG2607 Predicted ATPase (AAA+ 99.4 4.4E-11 9.5E-16 109.2 17.8 194 171-393 53-275 (287)
181 KOG1942|consensus 99.4 5.1E-11 1.1E-15 111.5 17.6 133 272-424 297-443 (456)
182 PRK05564 DNA polymerase III su 99.3 1.6E-11 3.5E-16 120.7 15.2 170 176-383 2-183 (313)
183 KOG1969|consensus 99.3 1.8E-11 3.8E-16 126.7 15.8 213 169-403 262-519 (877)
184 PRK11331 5-methylcytosine-spec 99.3 1.5E-11 3.2E-16 123.9 14.8 148 177-352 174-362 (459)
185 PF07728 AAA_5: AAA domain (dy 99.3 1E-12 2.2E-17 113.4 5.6 112 214-340 1-139 (139)
186 TIGR00678 holB DNA polymerase 99.3 2E-11 4.4E-16 111.0 14.2 148 211-382 13-183 (188)
187 PRK15429 formate hydrogenlyase 99.3 2.3E-11 5E-16 131.8 17.0 199 174-399 372-609 (686)
188 COG0470 HolB ATPase involved i 99.3 4.5E-11 9.8E-16 117.7 16.7 147 179-357 2-176 (325)
189 PRK07399 DNA polymerase III su 99.3 2.3E-11 5E-16 119.1 14.3 177 176-386 2-217 (314)
190 COG0542 clpA ATP-binding subun 99.3 8.2E-11 1.8E-15 125.1 19.3 168 174-366 166-350 (786)
191 PF06068 TIP49: TIP49 C-termin 99.3 2.8E-11 6E-16 117.8 14.4 101 272-392 279-392 (398)
192 PF05621 TniB: Bacterial TniB 99.3 1.4E-10 3.1E-15 110.8 18.1 190 212-414 61-284 (302)
193 COG0606 Predicted ATPase with 99.3 4E-12 8.7E-17 126.9 6.0 213 175-418 176-484 (490)
194 smart00382 AAA ATPases associa 99.3 3.6E-11 7.9E-16 102.0 11.2 126 212-349 2-147 (148)
195 COG1219 ClpX ATP-dependent pro 99.3 3.3E-11 7.1E-16 114.1 10.8 132 177-308 60-202 (408)
196 KOG1514|consensus 99.3 2.8E-10 6E-15 117.7 18.4 224 178-422 396-658 (767)
197 KOG2680|consensus 99.3 2.7E-10 5.9E-15 107.0 16.6 133 272-424 289-434 (454)
198 PRK10923 glnG nitrogen regulat 99.2 3.3E-11 7.2E-16 125.1 11.5 211 176-416 136-385 (469)
199 PRK04132 replication factor C 99.2 3E-10 6.4E-15 123.1 18.8 160 211-396 563-736 (846)
200 PRK05707 DNA polymerase III su 99.2 1.3E-10 2.9E-15 114.4 14.4 133 211-362 21-178 (328)
201 PRK08058 DNA polymerase III su 99.2 9.2E-11 2E-15 116.0 12.7 154 176-360 3-180 (329)
202 COG1220 HslU ATP-dependent pro 99.2 4.8E-11 1E-15 113.7 10.1 85 273-359 252-346 (444)
203 TIGR02915 PEP_resp_reg putativ 99.2 4.9E-11 1.1E-15 123.0 11.1 207 176-412 137-382 (445)
204 TIGR00602 rad24 checkpoint pro 99.2 3.1E-10 6.7E-15 119.9 16.1 200 173-399 79-328 (637)
205 KOG0745|consensus 99.2 7.9E-10 1.7E-14 108.6 16.8 96 213-308 227-331 (564)
206 smart00763 AAA_PrkA PrkA AAA d 99.2 3.8E-10 8.2E-15 110.9 14.0 167 176-364 48-329 (361)
207 COG3283 TyrR Transcriptional r 99.2 2.2E-10 4.7E-15 110.1 11.7 200 172-399 198-432 (511)
208 PF14532 Sigma54_activ_2: Sigm 99.2 6.8E-11 1.5E-15 102.1 7.4 126 181-348 1-137 (138)
209 PRK13406 bchD magnesium chelat 99.2 3.6E-10 7.9E-15 118.8 13.6 197 213-426 26-257 (584)
210 PF07726 AAA_3: ATPase family 99.1 9.1E-12 2E-16 104.2 1.2 107 214-340 1-129 (131)
211 KOG0991|consensus 99.1 5.1E-10 1.1E-14 101.8 12.3 182 170-393 19-213 (333)
212 PTZ00111 DNA replication licen 99.1 1.4E-09 3E-14 117.4 17.9 228 178-422 450-807 (915)
213 PRK11361 acetoacetate metaboli 99.1 2.3E-10 5.1E-15 118.3 11.6 209 176-415 141-389 (457)
214 PRK15115 response regulator Gl 99.1 1.9E-10 4.1E-15 118.6 10.4 207 178-415 134-380 (444)
215 TIGR01818 ntrC nitrogen regula 99.1 2.8E-10 6.1E-15 117.9 11.6 210 177-416 133-381 (463)
216 PF13177 DNA_pol3_delta2: DNA 99.1 4.2E-10 9.1E-15 99.9 10.9 134 182-349 1-161 (162)
217 PRK08116 hypothetical protein; 99.1 9.5E-10 2.1E-14 105.6 13.6 123 212-351 114-251 (268)
218 KOG2227|consensus 99.1 3.4E-09 7.5E-14 105.3 17.3 225 175-422 147-418 (529)
219 PRK06964 DNA polymerase III su 99.0 1.8E-09 3.9E-14 106.6 12.4 132 211-361 20-203 (342)
220 PRK06871 DNA polymerase III su 99.0 5.9E-09 1.3E-13 102.2 15.9 132 211-361 23-178 (325)
221 PRK12377 putative replication 99.0 5.1E-09 1.1E-13 99.0 12.3 101 212-327 101-206 (248)
222 PRK08769 DNA polymerase III su 99.0 1.2E-08 2.6E-13 99.9 15.2 131 211-360 25-183 (319)
223 PRK08181 transposase; Validate 99.0 8.1E-09 1.8E-13 98.8 13.4 125 211-353 105-246 (269)
224 PRK07993 DNA polymerase III su 99.0 1E-08 2.2E-13 101.4 14.0 131 211-360 23-178 (334)
225 KOG0741|consensus 99.0 7.4E-09 1.6E-13 104.0 12.9 144 210-360 536-684 (744)
226 PRK10365 transcriptional regul 98.9 3.6E-09 7.7E-14 108.9 10.7 207 179-415 140-385 (441)
227 KOG0990|consensus 98.9 9.7E-09 2.1E-13 97.7 12.1 164 169-364 32-205 (360)
228 PRK06090 DNA polymerase III su 98.9 2.1E-08 4.6E-13 98.1 14.2 131 211-360 24-178 (319)
229 PRK07952 DNA replication prote 98.9 8.2E-09 1.8E-13 97.4 10.8 100 213-327 100-205 (244)
230 PRK08699 DNA polymerase III su 98.9 9.7E-09 2.1E-13 101.1 11.2 130 211-360 20-183 (325)
231 PRK06835 DNA replication prote 98.9 2.1E-08 4.6E-13 98.7 13.2 123 212-351 183-319 (329)
232 KOG2035|consensus 98.9 1E-07 2.2E-12 89.1 16.7 177 173-381 8-219 (351)
233 PF01637 Arch_ATPase: Archaeal 98.9 5.8E-09 1.3E-13 97.2 8.0 182 180-388 1-231 (234)
234 PF03215 Rad17: Rad17 cell cyc 98.9 5E-08 1.1E-12 101.4 15.3 203 173-400 14-269 (519)
235 PRK06526 transposase; Provisio 98.8 7.5E-09 1.6E-13 98.4 7.8 101 211-327 97-201 (254)
236 PRK06921 hypothetical protein; 98.8 4.4E-08 9.4E-13 94.0 12.3 104 211-326 116-224 (266)
237 COG3284 AcoR Transcriptional a 98.8 1E-08 2.2E-13 105.8 8.2 171 212-399 336-540 (606)
238 PRK08939 primosomal protein Dn 98.8 3E-08 6.5E-13 96.9 10.8 102 211-327 155-261 (306)
239 PF13173 AAA_14: AAA domain 98.8 3.7E-08 8E-13 83.8 9.1 120 213-353 3-126 (128)
240 PF01695 IstB_IS21: IstB-like 98.8 1.2E-08 2.5E-13 92.0 6.1 101 211-327 46-150 (178)
241 COG3267 ExeA Type II secretory 98.8 1.1E-06 2.4E-11 81.7 19.0 187 213-413 52-267 (269)
242 KOG2170|consensus 98.8 1.2E-07 2.7E-12 89.6 12.9 129 178-327 82-225 (344)
243 PRK09183 transposase/IS protei 98.8 4.8E-08 1E-12 93.4 10.4 102 211-327 101-206 (259)
244 PF00493 MCM: MCM2/3/5 family 98.7 8.3E-09 1.8E-13 102.1 4.9 225 177-421 23-328 (331)
245 COG1484 DnaC DNA replication p 98.7 1.9E-07 4.1E-12 88.9 13.2 101 211-327 104-209 (254)
246 PF12774 AAA_6: Hydrolytic ATP 98.7 4E-07 8.6E-12 85.3 14.0 127 212-359 32-177 (231)
247 KOG0478|consensus 98.6 6.5E-07 1.4E-11 92.8 15.3 196 213-422 463-727 (804)
248 COG1241 MCM2 Predicted ATPase 98.6 3.2E-07 6.8E-12 97.2 12.8 227 177-422 285-595 (682)
249 PF13401 AAA_22: AAA domain; P 98.6 1.4E-07 3E-12 80.1 7.6 72 212-283 4-99 (131)
250 PF05729 NACHT: NACHT domain 98.5 1.1E-06 2.5E-11 77.2 12.3 142 214-364 2-165 (166)
251 KOG0480|consensus 98.5 7.2E-07 1.6E-11 91.8 12.3 230 176-422 343-646 (764)
252 PF03969 AFG1_ATPase: AFG1-lik 98.5 2.6E-07 5.6E-12 92.2 8.9 103 209-327 59-168 (362)
253 PRK05917 DNA polymerase III su 98.5 4.7E-07 1E-11 87.2 9.9 121 211-350 18-155 (290)
254 PRK07276 DNA polymerase III su 98.5 4.8E-06 1E-10 80.4 15.4 127 211-359 23-172 (290)
255 PRK05818 DNA polymerase III su 98.5 1.1E-06 2.4E-11 82.8 10.8 121 210-349 5-147 (261)
256 PF12775 AAA_7: P-loop contain 98.5 4.7E-07 1E-11 87.1 8.2 140 211-364 32-195 (272)
257 COG1485 Predicted ATPase [Gene 98.4 9.9E-07 2.2E-11 85.6 9.8 101 209-326 62-170 (367)
258 cd01120 RecA-like_NTPases RecA 98.4 1.1E-06 2.4E-11 76.9 9.4 111 215-329 2-139 (165)
259 COG4650 RtcR Sigma54-dependent 98.4 1.6E-06 3.4E-11 81.9 9.8 190 211-421 207-445 (531)
260 PRK07132 DNA polymerase III su 98.4 9E-06 1.9E-10 79.1 15.4 125 212-360 18-160 (299)
261 PLN03210 Resistant to P. syrin 98.4 6.2E-06 1.3E-10 94.7 16.5 178 173-386 179-391 (1153)
262 COG5271 MDN1 AAA ATPase contai 98.4 2.8E-06 6E-11 94.8 11.8 135 212-362 888-1047(4600)
263 PF13191 AAA_16: AAA ATPase do 98.4 1.1E-06 2.3E-11 79.1 7.3 59 180-248 2-63 (185)
264 PF00931 NB-ARC: NB-ARC domain 98.3 2.5E-05 5.5E-10 75.5 16.8 168 184-385 2-197 (287)
265 PF00910 RNA_helicase: RNA hel 98.3 1.7E-06 3.8E-11 71.1 7.0 23 215-237 1-23 (107)
266 KOG2228|consensus 98.3 6.4E-06 1.4E-10 79.3 11.6 164 176-362 22-219 (408)
267 KOG1970|consensus 98.3 3.2E-05 6.9E-10 78.9 16.0 205 174-399 78-320 (634)
268 TIGR02237 recomb_radB DNA repa 98.2 3E-06 6.5E-11 78.2 7.8 78 208-285 8-111 (209)
269 TIGR02688 conserved hypothetic 98.2 2.2E-05 4.8E-10 78.8 13.5 191 211-422 208-436 (449)
270 COG5271 MDN1 AAA ATPase contai 98.2 7.1E-06 1.5E-10 91.7 10.2 136 211-362 1542-1703(4600)
271 KOG0477|consensus 98.2 9.4E-06 2E-10 83.5 9.8 191 213-422 483-760 (854)
272 KOG0482|consensus 98.1 7.2E-06 1.6E-10 82.5 8.6 224 178-423 342-642 (721)
273 KOG1968|consensus 98.1 8.5E-06 1.8E-10 89.1 9.3 163 215-398 360-535 (871)
274 PF14516 AAA_35: AAA-like doma 98.1 0.0004 8.6E-09 68.9 20.5 172 211-395 30-243 (331)
275 PRK11823 DNA repair protein Ra 98.1 1.6E-05 3.5E-10 81.8 10.2 79 208-286 76-171 (446)
276 PRK08533 flagellar accessory p 98.1 4.1E-05 8.9E-10 71.9 11.9 110 208-327 20-163 (230)
277 TIGR01618 phage_P_loop phage n 98.1 9.5E-06 2E-10 75.3 7.2 98 212-311 12-131 (220)
278 KOG2543|consensus 98.1 6.2E-05 1.3E-09 73.8 13.0 162 176-361 4-192 (438)
279 cd01124 KaiC KaiC is a circadi 98.1 4E-05 8.7E-10 69.1 11.2 104 214-328 1-141 (187)
280 cd00983 recA RecA is a bacter 98.1 2E-05 4.3E-10 77.3 9.7 118 208-325 51-190 (325)
281 COG1373 Predicted ATPase (AAA+ 98.1 0.00022 4.9E-09 72.4 17.6 123 214-356 39-161 (398)
282 PRK09361 radB DNA repair and r 98.0 1.9E-05 4E-10 73.8 8.7 40 207-246 18-60 (225)
283 cd01121 Sms Sms (bacterial rad 98.0 2E-05 4.3E-10 79.1 9.1 79 208-286 78-173 (372)
284 COG1618 Predicted nucleotide k 98.0 6.4E-05 1.4E-09 65.3 10.7 26 211-236 4-29 (179)
285 PF06309 Torsin: Torsin; Inte 98.0 2.1E-05 4.6E-10 65.9 7.5 54 176-235 23-76 (127)
286 KOG2383|consensus 98.0 3.1E-05 6.7E-10 76.2 9.6 161 210-397 112-298 (467)
287 TIGR02012 tigrfam_recA protein 98.0 3.8E-05 8.3E-10 75.2 10.3 118 208-325 51-190 (321)
288 cd01128 rho_factor Transcripti 98.0 8.1E-05 1.7E-09 70.6 12.0 115 211-325 15-165 (249)
289 COG1116 TauB ABC-type nitrate/ 98.0 1.8E-05 3.9E-10 73.7 7.1 26 210-235 27-52 (248)
290 COG4178 ABC-type uncharacteriz 98.0 1.9E-05 4.1E-10 82.6 8.0 107 207-328 414-575 (604)
291 PF07693 KAP_NTPase: KAP famil 98.0 0.00037 8E-09 68.6 16.7 82 270-366 171-267 (325)
292 KOG0481|consensus 97.9 3.9E-05 8.4E-10 77.5 8.9 225 178-422 331-642 (729)
293 PHA00729 NTP-binding motif con 97.9 2E-05 4.3E-10 73.1 5.8 25 213-237 18-42 (226)
294 PF13207 AAA_17: AAA domain; P 97.9 8.8E-06 1.9E-10 68.0 3.2 31 215-245 2-32 (121)
295 PRK06067 flagellar accessory p 97.9 5E-05 1.1E-09 71.4 8.6 38 208-245 21-61 (234)
296 cd01394 radB RadB. The archaea 97.9 6E-05 1.3E-09 70.0 8.8 118 207-326 14-157 (218)
297 TIGR02858 spore_III_AA stage I 97.9 5.4E-05 1.2E-09 72.7 8.5 69 213-281 112-204 (270)
298 KOG1051|consensus 97.8 0.00015 3.3E-09 79.0 12.6 162 177-364 185-365 (898)
299 COG4619 ABC-type uncharacteriz 97.8 6.6E-05 1.4E-09 65.7 7.7 30 206-235 23-52 (223)
300 PRK09376 rho transcription ter 97.8 9.3E-05 2E-09 73.8 9.9 114 211-324 168-317 (416)
301 PRK00131 aroK shikimate kinase 97.8 1.8E-05 4E-10 70.3 4.2 35 210-244 2-36 (175)
302 PRK08118 topology modulation p 97.8 4.3E-05 9.3E-10 68.1 6.2 33 213-245 2-34 (167)
303 PHA02624 large T antigen; Prov 97.8 7.3E-05 1.6E-09 78.1 8.2 123 208-348 427-561 (647)
304 PRK04841 transcriptional regul 97.8 0.00054 1.2E-08 77.0 16.0 154 212-386 32-221 (903)
305 PRK15455 PrkA family serine pr 97.8 1.9E-05 4.2E-10 81.9 3.8 62 175-243 73-135 (644)
306 cd03238 ABC_UvrA The excision 97.7 0.00012 2.7E-09 65.7 8.4 118 209-347 18-162 (176)
307 cd03283 ABC_MutS-like MutS-lik 97.7 0.00017 3.8E-09 66.1 9.4 106 210-329 23-150 (199)
308 cd03216 ABC_Carb_Monos_I This 97.7 0.00018 3.9E-09 63.8 8.8 106 209-328 23-143 (163)
309 PF13671 AAA_33: AAA domain; P 97.7 0.00011 2.4E-09 63.1 7.3 37 215-253 2-38 (143)
310 PF04665 Pox_A32: Poxvirus A32 97.7 0.0008 1.7E-08 63.2 13.4 132 211-361 12-169 (241)
311 PRK04296 thymidine kinase; Pro 97.7 0.00034 7.4E-09 63.7 10.8 70 214-283 4-90 (190)
312 PRK07261 topology modulation p 97.7 7.5E-05 1.6E-09 66.8 6.1 33 214-246 2-34 (171)
313 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 0.00022 4.9E-09 61.8 8.9 101 209-328 23-128 (144)
314 PRK00771 signal recognition pa 97.7 0.00092 2E-08 68.5 14.7 193 211-421 94-334 (437)
315 TIGR03877 thermo_KaiC_1 KaiC d 97.7 0.0004 8.7E-09 65.5 11.4 39 207-245 16-57 (237)
316 PRK09354 recA recombinase A; P 97.7 0.00014 3.1E-09 71.9 8.5 78 208-285 56-152 (349)
317 cd01131 PilT Pilus retraction 97.7 0.00015 3.3E-09 66.4 8.2 67 214-280 3-83 (198)
318 PF05707 Zot: Zonular occluden 97.7 7.3E-05 1.6E-09 68.2 5.8 123 215-349 3-146 (193)
319 TIGR00416 sms DNA repair prote 97.7 0.00026 5.6E-09 73.1 10.5 78 208-285 90-184 (454)
320 COG3854 SpoIIIAA ncharacterize 97.7 0.00028 6E-09 64.9 9.3 71 213-283 138-230 (308)
321 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00014 3E-09 68.3 7.7 117 208-325 15-168 (235)
322 COG1121 ZnuC ABC-type Mn/Zn tr 97.7 0.00015 3.1E-09 68.4 7.7 56 261-330 147-202 (254)
323 PRK06581 DNA polymerase III su 97.6 0.00038 8.2E-09 64.8 10.1 136 212-366 15-165 (263)
324 PF03266 NTPase_1: NTPase; In 97.6 4.6E-05 1E-09 67.9 4.0 23 214-236 1-23 (168)
325 COG1126 GlnQ ABC-type polar am 97.6 0.00018 4E-09 65.6 7.6 40 261-310 144-183 (240)
326 cd01393 recA_like RecA is a b 97.6 0.00019 4E-09 67.0 8.0 117 208-325 15-167 (226)
327 PRK13948 shikimate kinase; Pro 97.6 0.00021 4.4E-09 64.6 7.9 42 211-254 9-50 (182)
328 PHA02774 E1; Provisional 97.6 0.00022 4.8E-09 74.2 8.9 38 208-245 430-468 (613)
329 cd03223 ABCD_peroxisomal_ALDP 97.6 0.0004 8.7E-09 61.7 9.4 103 209-328 24-149 (166)
330 PF06745 KaiC: KaiC; InterPro 97.6 0.00025 5.3E-09 66.3 8.4 109 207-325 14-159 (226)
331 PF13604 AAA_30: AAA domain; P 97.6 0.00013 2.9E-09 66.7 6.4 33 213-245 19-54 (196)
332 PRK12339 2-phosphoglycerate ki 97.6 0.00082 1.8E-08 61.5 11.6 74 342-422 121-194 (197)
333 COG1136 SalX ABC-type antimicr 97.6 0.00026 5.5E-09 65.7 8.2 67 261-347 150-216 (226)
334 COG2274 SunT ABC-type bacterio 97.6 0.00018 4E-09 77.8 8.3 65 261-347 617-681 (709)
335 PRK12723 flagellar biosynthesi 97.6 0.00064 1.4E-08 68.5 11.4 132 211-356 173-329 (388)
336 PRK04040 adenylate kinase; Pro 97.6 0.00058 1.3E-08 62.1 10.1 26 212-237 2-27 (188)
337 PRK13695 putative NTPase; Prov 97.6 0.0012 2.6E-08 59.0 11.9 23 214-236 2-24 (174)
338 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00043 9.3E-09 62.3 8.9 106 210-328 23-133 (177)
339 KOG3928|consensus 97.5 0.0024 5.3E-08 63.4 14.7 50 343-393 405-458 (461)
340 TIGR01420 pilT_fam pilus retra 97.5 0.00012 2.7E-09 72.9 6.0 71 211-281 121-205 (343)
341 cd03243 ABC_MutS_homologs The 97.5 0.00046 1E-08 63.4 9.1 24 211-234 28-51 (202)
342 PRK06762 hypothetical protein; 97.5 0.00033 7.2E-09 62.0 7.8 40 213-252 3-42 (166)
343 PRK05800 cobU adenosylcobinami 97.5 0.00054 1.2E-08 61.2 9.1 106 214-326 3-125 (170)
344 PRK10536 hypothetical protein; 97.5 0.0011 2.3E-08 62.8 11.4 47 174-235 51-97 (262)
345 cd00046 DEXDc DEAD-like helica 97.5 0.00064 1.4E-08 57.0 9.1 24 213-236 1-24 (144)
346 COG1124 DppF ABC-type dipeptid 97.5 0.00049 1.1E-08 63.9 8.7 53 262-327 150-202 (252)
347 cd01122 GP4d_helicase GP4d_hel 97.5 0.00047 1E-08 66.2 9.2 38 208-245 26-67 (271)
348 cd00544 CobU Adenosylcobinamid 97.5 0.00065 1.4E-08 60.6 9.2 106 215-326 2-125 (169)
349 PRK05973 replicative DNA helic 97.5 0.00079 1.7E-08 63.3 10.1 38 208-245 60-100 (237)
350 cd03247 ABCC_cytochrome_bd The 97.5 0.00092 2E-08 60.0 10.3 106 209-329 25-159 (178)
351 TIGR03878 thermo_KaiC_2 KaiC d 97.5 0.00099 2.2E-08 63.7 11.0 37 208-244 32-71 (259)
352 PRK10867 signal recognition pa 97.5 0.0044 9.6E-08 63.4 16.2 195 211-421 99-342 (433)
353 PRK13947 shikimate kinase; Pro 97.5 9.7E-05 2.1E-09 65.7 3.8 32 214-245 3-34 (171)
354 cd01129 PulE-GspE PulE/GspE Th 97.5 0.00072 1.5E-08 64.9 9.9 93 176-282 58-160 (264)
355 cd00984 DnaB_C DnaB helicase C 97.5 0.00048 1E-08 64.9 8.6 38 208-245 9-50 (242)
356 cd03280 ABC_MutS2 MutS2 homolo 97.5 0.00091 2E-08 61.3 10.2 23 211-233 26-49 (200)
357 PRK03839 putative kinase; Prov 97.5 9.5E-05 2.1E-09 66.5 3.5 31 214-244 2-32 (180)
358 cd03228 ABCC_MRP_Like The MRP 97.5 0.00087 1.9E-08 59.8 9.7 107 209-330 25-158 (171)
359 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00076 1.6E-08 62.6 9.6 109 213-332 30-159 (213)
360 cd00464 SK Shikimate kinase (S 97.5 0.00011 2.5E-09 63.9 3.9 39 214-254 1-39 (154)
361 COG2804 PulE Type II secretory 97.4 0.0004 8.6E-09 70.9 8.2 95 174-282 234-338 (500)
362 TIGR02238 recomb_DMC1 meiotic 97.4 0.00057 1.2E-08 67.1 9.0 115 208-324 92-243 (313)
363 TIGR00767 rho transcription te 97.4 0.00065 1.4E-08 68.1 9.4 115 210-324 166-316 (415)
364 TIGR03880 KaiC_arch_3 KaiC dom 97.4 0.0013 2.8E-08 61.4 11.0 110 208-326 12-153 (224)
365 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.00079 1.7E-08 59.1 9.0 107 209-329 22-142 (157)
366 COG0703 AroK Shikimate kinase 97.4 0.00041 8.9E-09 61.5 7.0 33 213-245 3-35 (172)
367 PRK00625 shikimate kinase; Pro 97.4 0.00011 2.5E-09 65.8 3.5 31 214-244 2-32 (173)
368 KOG3347|consensus 97.4 0.00011 2.4E-09 62.9 3.3 31 213-243 8-38 (176)
369 cd00227 CPT Chloramphenicol (C 97.4 0.00013 2.7E-09 65.5 3.8 38 212-249 2-39 (175)
370 cd03246 ABCC_Protease_Secretio 97.4 0.001 2.2E-08 59.5 9.6 105 210-328 26-157 (173)
371 cd03214 ABC_Iron-Siderophores_ 97.4 0.00071 1.5E-08 60.9 8.7 108 209-329 22-160 (180)
372 TIGR02782 TrbB_P P-type conjug 97.4 0.00031 6.7E-09 68.6 6.6 72 211-282 131-215 (299)
373 PRK14722 flhF flagellar biosyn 97.4 0.00071 1.5E-08 67.7 9.2 26 210-235 135-160 (374)
374 PRK09519 recA DNA recombinatio 97.4 0.00065 1.4E-08 73.7 9.5 117 208-324 56-194 (790)
375 cd03230 ABC_DR_subfamily_A Thi 97.4 0.00081 1.8E-08 60.1 8.6 106 209-328 23-156 (173)
376 PRK04328 hypothetical protein; 97.4 0.0021 4.5E-08 61.2 11.8 38 208-245 19-59 (249)
377 PRK13949 shikimate kinase; Pro 97.4 0.00015 3.2E-09 64.8 3.5 32 213-244 2-33 (169)
378 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00015 3.3E-09 65.2 3.7 35 215-251 2-36 (183)
379 smart00534 MUTSac ATPase domai 97.4 0.00077 1.7E-08 61.1 8.2 101 215-328 2-123 (185)
380 PRK14532 adenylate kinase; Pro 97.4 0.00015 3.2E-09 65.7 3.5 37 214-252 2-38 (188)
381 TIGR02525 plasmid_TraJ plasmid 97.4 0.00059 1.3E-08 68.5 8.0 70 213-282 150-236 (372)
382 PF00437 T2SE: Type II/IV secr 97.4 0.00017 3.7E-09 69.3 4.0 72 211-282 126-208 (270)
383 COG1120 FepC ABC-type cobalami 97.3 0.00041 8.8E-09 65.7 6.4 27 209-235 25-51 (258)
384 PF00448 SRP54: SRP54-type pro 97.3 0.00098 2.1E-08 61.0 8.8 102 212-326 1-125 (196)
385 PTZ00202 tuzin; Provisional 97.3 0.0068 1.5E-07 61.4 15.2 61 176-246 260-320 (550)
386 PLN03187 meiotic recombination 97.3 0.00077 1.7E-08 66.9 8.6 116 208-324 122-273 (344)
387 PRK12608 transcription termina 97.3 0.002 4.4E-08 64.2 11.5 114 211-324 132-281 (380)
388 PF01745 IPT: Isopentenyl tran 97.3 0.00038 8.3E-09 63.5 5.7 139 214-368 3-145 (233)
389 PRK13900 type IV secretion sys 97.3 0.00056 1.2E-08 67.7 7.4 72 211-282 159-246 (332)
390 COG0563 Adk Adenylate kinase a 97.3 0.00031 6.8E-09 63.2 5.2 34 214-249 2-35 (178)
391 cd01130 VirB11-like_ATPase Typ 97.3 0.00068 1.5E-08 61.4 7.3 71 211-281 24-110 (186)
392 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.0015 3.3E-08 60.9 9.8 24 211-234 30-53 (222)
393 TIGR02788 VirB11 P-type DNA tr 97.3 0.00088 1.9E-08 65.8 8.5 74 209-282 141-229 (308)
394 PRK06217 hypothetical protein; 97.3 0.00021 4.5E-09 64.6 3.8 31 214-244 3-33 (183)
395 COG4088 Predicted nucleotide k 97.3 0.00069 1.5E-08 61.3 6.9 23 215-237 4-26 (261)
396 TIGR03881 KaiC_arch_4 KaiC dom 97.3 0.0027 5.9E-08 59.3 11.5 38 208-245 16-56 (229)
397 PLN02200 adenylate kinase fami 97.3 0.00047 1E-08 64.9 6.2 40 211-252 42-81 (234)
398 PRK04301 radA DNA repair and r 97.3 0.001 2.3E-08 65.5 9.0 117 208-325 98-251 (317)
399 cd03282 ABC_MSH4_euk MutS4 hom 97.3 0.0018 3.8E-08 59.7 9.8 24 211-234 28-51 (204)
400 COG2874 FlaH Predicted ATPases 97.3 0.0013 2.7E-08 60.0 8.6 127 198-336 12-176 (235)
401 cd02021 GntK Gluconate kinase 97.3 0.0002 4.4E-09 62.2 3.5 28 215-242 2-29 (150)
402 PRK14531 adenylate kinase; Pro 97.3 0.00022 4.9E-09 64.4 3.8 31 213-243 3-33 (183)
403 TIGR01313 therm_gnt_kin carboh 97.3 0.00022 4.8E-09 63.0 3.6 28 215-242 1-28 (163)
404 PRK13541 cytochrome c biogenes 97.3 0.00083 1.8E-08 61.3 7.5 27 209-235 23-49 (195)
405 smart00487 DEXDc DEAD-like hel 97.3 0.0015 3.3E-08 58.3 9.0 23 213-235 25-48 (201)
406 COG5245 DYN1 Dynein, heavy cha 97.3 0.0025 5.4E-08 71.9 11.9 181 207-402 1489-1719(3164)
407 cd03232 ABC_PDR_domain2 The pl 97.3 0.0024 5.3E-08 58.1 10.3 105 210-328 31-169 (192)
408 PRK13539 cytochrome c biogenes 97.2 0.00073 1.6E-08 62.3 6.9 27 209-235 25-51 (207)
409 PTZ00088 adenylate kinase 1; P 97.2 0.0003 6.4E-09 66.0 4.3 33 212-244 6-38 (229)
410 cd01428 ADK Adenylate kinase ( 97.2 0.00026 5.6E-09 64.2 3.8 35 215-251 2-36 (194)
411 PF05970 PIF1: PIF1-like helic 97.2 0.0013 2.9E-08 66.1 9.2 101 211-324 21-148 (364)
412 TIGR02236 recomb_radA DNA repa 97.2 0.0014 3.1E-08 64.3 9.2 40 208-247 91-139 (310)
413 PRK05057 aroK shikimate kinase 97.2 0.00033 7.2E-09 62.7 4.3 34 212-245 4-37 (172)
414 PF10443 RNA12: RNA12 protein; 97.2 0.019 4.1E-07 58.0 17.0 80 273-365 150-232 (431)
415 cd03215 ABC_Carb_Monos_II This 97.2 0.0019 4.2E-08 58.1 9.3 105 209-327 23-164 (182)
416 PRK06547 hypothetical protein; 97.2 0.00027 5.8E-09 63.3 3.6 34 211-244 14-47 (172)
417 TIGR00959 ffh signal recogniti 97.2 0.018 4E-07 58.9 17.3 195 211-421 98-341 (428)
418 cd02020 CMPK Cytidine monophos 97.2 0.00027 5.9E-09 60.8 3.5 30 215-244 2-31 (147)
419 PRK14530 adenylate kinase; Pro 97.2 0.00028 6.1E-09 65.5 3.8 31 213-243 4-34 (215)
420 TIGR03864 PQQ_ABC_ATP ABC tran 97.2 0.00088 1.9E-08 63.0 7.1 27 209-235 24-50 (236)
421 COG2805 PilT Tfp pilus assembl 97.2 0.0022 4.9E-08 61.3 9.5 73 211-283 124-210 (353)
422 COG1119 ModF ABC-type molybden 97.2 0.0032 7E-08 58.6 10.3 64 261-336 179-242 (257)
423 PTZ00035 Rad51 protein; Provis 97.2 0.0014 2.9E-08 65.2 8.4 114 208-323 114-264 (337)
424 PRK13833 conjugal transfer pro 97.2 0.00087 1.9E-08 65.9 7.0 71 211-281 143-225 (323)
425 PLN02674 adenylate kinase 97.2 0.00047 1E-08 65.1 4.9 39 211-251 30-68 (244)
426 PRK14974 cell division protein 97.2 0.0025 5.5E-08 63.1 10.2 73 211-283 139-234 (336)
427 COG1118 CysA ABC-type sulfate/ 97.2 0.00069 1.5E-08 64.9 5.8 26 209-234 25-50 (345)
428 cd03301 ABC_MalK_N The N-termi 97.2 0.00092 2E-08 61.7 6.7 27 209-235 23-49 (213)
429 PRK08154 anaerobic benzoate ca 97.2 0.0012 2.6E-08 64.9 7.7 44 210-255 131-174 (309)
430 cd03213 ABCG_EPDR ABCG transpo 97.2 0.002 4.4E-08 58.7 8.8 105 209-327 32-171 (194)
431 COG1117 PstB ABC-type phosphat 97.2 0.0025 5.5E-08 58.1 9.1 25 210-234 31-55 (253)
432 PRK03731 aroL shikimate kinase 97.2 0.0004 8.6E-09 61.9 3.9 32 213-244 3-34 (171)
433 COG2884 FtsE Predicted ATPase 97.2 0.0033 7.1E-08 56.4 9.5 54 262-329 146-199 (223)
434 cd03227 ABC_Class2 ABC-type Cl 97.2 0.002 4.4E-08 56.9 8.5 24 211-234 20-43 (162)
435 TIGR02239 recomb_RAD51 DNA rep 97.1 0.001 2.2E-08 65.5 7.0 115 208-324 92-243 (316)
436 PF05272 VirE: Virulence-assoc 97.1 0.00084 1.8E-08 61.5 6.0 111 208-348 48-169 (198)
437 PRK11889 flhF flagellar biosyn 97.1 0.0048 1E-07 61.9 11.7 96 184-283 217-332 (436)
438 PRK13851 type IV secretion sys 97.1 0.0004 8.7E-09 68.9 4.1 73 210-282 160-247 (344)
439 PRK13538 cytochrome c biogenes 97.1 0.00089 1.9E-08 61.5 6.2 27 209-235 24-50 (204)
440 cd03266 ABC_NatA_sodium_export 97.1 0.001 2.2E-08 61.7 6.6 27 209-235 28-54 (218)
441 cd03115 SRP The signal recogni 97.1 0.005 1.1E-07 54.9 10.9 32 215-246 3-37 (173)
442 cd03229 ABC_Class3 This class 97.1 0.0018 3.9E-08 58.2 7.9 107 209-328 23-162 (178)
443 TIGR01189 ccmA heme ABC export 97.1 0.0018 4E-08 59.1 8.2 27 209-235 23-49 (198)
444 cd03293 ABC_NrtD_SsuB_transpor 97.1 0.00078 1.7E-08 62.6 5.8 27 209-235 27-53 (220)
445 PRK11176 lipid transporter ATP 97.1 0.0015 3.3E-08 69.8 8.7 27 209-235 366-392 (582)
446 PF08303 tRNA_lig_kinase: tRNA 97.1 0.01 2.2E-07 52.1 12.2 132 218-366 5-147 (168)
447 KOG0058|consensus 97.1 0.0008 1.7E-08 71.2 6.3 28 207-234 489-516 (716)
448 cd03285 ABC_MSH2_euk MutS2 hom 97.1 0.0034 7.3E-08 58.6 10.0 24 211-234 29-52 (222)
449 cd03263 ABC_subfamily_A The AB 97.1 0.0011 2.4E-08 61.6 6.6 27 209-235 25-51 (220)
450 KOG1808|consensus 97.1 0.00068 1.5E-08 78.7 6.2 131 213-359 441-596 (1856)
451 PRK12724 flagellar biosynthesi 97.1 0.0097 2.1E-07 60.3 13.7 72 211-282 222-310 (432)
452 COG1102 Cmk Cytidylate kinase 97.1 0.0004 8.7E-09 60.4 3.3 28 215-242 3-30 (179)
453 PRK13946 shikimate kinase; Pro 97.1 0.00042 9.1E-09 62.7 3.6 34 212-245 10-43 (184)
454 cd03217 ABC_FeS_Assembly ABC-t 97.1 0.0021 4.5E-08 59.0 8.2 106 209-328 23-165 (200)
455 COG1066 Sms Predicted ATP-depe 97.1 0.0029 6.3E-08 63.0 9.6 100 208-307 89-204 (456)
456 TIGR02655 circ_KaiC circadian 97.1 0.0029 6.3E-08 66.1 10.3 77 208-284 259-366 (484)
457 COG3839 MalK ABC-type sugar tr 97.1 0.00033 7.2E-09 68.9 3.1 25 210-234 27-51 (338)
458 PRK14528 adenylate kinase; Pro 97.1 0.00043 9.4E-09 62.8 3.6 31 213-243 2-32 (186)
459 cd02027 APSK Adenosine 5'-phos 97.1 0.002 4.3E-08 56.2 7.7 34 215-248 2-38 (149)
460 PRK13540 cytochrome c biogenes 97.1 0.0013 2.7E-08 60.3 6.7 27 209-235 24-50 (200)
461 PRK11650 ugpC glycerol-3-phosp 97.1 0.00088 1.9E-08 67.1 6.0 26 210-235 28-53 (356)
462 PLN03186 DNA repair protein RA 97.1 0.0015 3.3E-08 64.8 7.6 116 208-325 119-271 (342)
463 PF10236 DAP3: Mitochondrial r 97.1 0.032 7E-07 54.7 16.8 119 271-389 156-307 (309)
464 TIGR02655 circ_KaiC circadian 97.1 0.0041 8.8E-08 65.0 11.1 38 208-245 17-58 (484)
465 PF00406 ADK: Adenylate kinase 97.1 0.00098 2.1E-08 58.1 5.5 35 217-253 1-35 (151)
466 PRK11174 cysteine/glutathione 97.1 0.0011 2.4E-08 70.9 7.1 29 208-236 372-400 (588)
467 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.0058 1.3E-07 53.8 10.3 116 214-347 4-153 (159)
468 PRK14527 adenylate kinase; Pro 97.1 0.00046 1E-08 62.8 3.5 33 211-243 5-37 (191)
469 cd03259 ABC_Carb_Solutes_like 97.1 0.0011 2.4E-08 61.2 6.2 27 209-235 23-49 (213)
470 PRK09452 potA putrescine/sperm 97.1 0.00088 1.9E-08 67.5 5.8 26 210-235 38-63 (375)
471 PRK13894 conjugal transfer ATP 97.1 0.0014 2.9E-08 64.6 6.9 72 211-282 147-230 (319)
472 PRK10436 hypothetical protein; 97.1 0.0016 3.6E-08 67.1 7.8 94 175-282 195-298 (462)
473 PRK13764 ATPase; Provisional 97.1 0.00064 1.4E-08 71.9 4.9 71 211-282 256-335 (602)
474 cd03268 ABC_BcrA_bacitracin_re 97.1 0.0013 2.8E-08 60.6 6.4 27 209-235 23-49 (208)
475 COG3842 PotA ABC-type spermidi 97.0 0.0009 2E-08 66.2 5.6 24 211-234 30-53 (352)
476 COG4608 AppF ABC-type oligopep 97.0 0.0015 3.2E-08 61.8 6.8 91 210-310 37-156 (268)
477 PRK02496 adk adenylate kinase; 97.0 0.00049 1.1E-08 62.1 3.4 30 214-243 3-32 (184)
478 PRK14730 coaE dephospho-CoA ki 97.0 0.0034 7.4E-08 57.3 9.0 38 214-253 3-40 (195)
479 PF08298 AAA_PrkA: PrkA AAA do 97.0 0.0011 2.3E-08 65.3 5.9 51 179-237 62-113 (358)
480 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0018 3.9E-08 61.5 7.5 34 215-248 2-38 (249)
481 cd03231 ABC_CcmA_heme_exporter 97.0 0.0012 2.6E-08 60.5 6.1 27 209-235 23-49 (201)
482 PRK13543 cytochrome c biogenes 97.0 0.0012 2.6E-08 61.1 6.1 27 209-235 34-60 (214)
483 TIGR01351 adk adenylate kinase 97.0 0.00053 1.1E-08 63.4 3.7 34 215-250 2-35 (210)
484 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00056 1.2E-08 61.6 3.7 36 213-250 4-39 (188)
485 PRK06696 uridine kinase; Valid 97.0 0.0011 2.3E-08 62.0 5.6 39 211-249 21-62 (223)
486 TIGR01526 nadR_NMN_Atrans nico 97.0 0.0017 3.7E-08 64.2 7.3 41 212-252 162-202 (325)
487 cd03265 ABC_DrrA DrrA is the A 97.0 0.0014 3E-08 60.9 6.4 27 209-235 23-49 (220)
488 cd03218 ABC_YhbG The ABC trans 97.0 0.0015 3.2E-08 61.2 6.6 27 209-235 23-49 (232)
489 COG1936 Predicted nucleotide k 97.0 0.00045 9.8E-09 60.8 2.8 30 214-244 2-31 (180)
490 COG1131 CcmA ABC-type multidru 97.0 0.0035 7.5E-08 61.1 9.3 53 265-330 148-200 (293)
491 TIGR01613 primase_Cterm phage/ 97.0 0.0022 4.7E-08 62.9 7.9 136 183-347 54-202 (304)
492 PRK11160 cysteine/glutathione 97.0 0.0025 5.4E-08 68.1 8.9 28 208-235 362-389 (574)
493 PRK13657 cyclic beta-1,2-gluca 97.0 0.0021 4.5E-08 68.9 8.3 27 209-235 358-384 (588)
494 TIGR00064 ftsY signal recognit 97.0 0.0058 1.3E-07 58.8 10.6 73 211-283 71-166 (272)
495 COG1127 Ttg2A ABC-type transpo 97.0 0.0026 5.6E-08 59.1 7.7 26 210-235 32-57 (263)
496 cd02022 DPCK Dephospho-coenzym 97.0 0.0044 9.6E-08 55.7 9.2 36 215-253 2-37 (179)
497 TIGR02857 CydD thiol reductant 97.0 0.0023 4.9E-08 67.7 8.5 28 208-235 344-371 (529)
498 TIGR02203 MsbA_lipidA lipid A 97.0 0.0019 4.1E-08 68.9 7.9 27 209-235 355-381 (571)
499 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0013 2.7E-08 56.2 5.2 29 211-239 21-49 (133)
500 PRK00279 adk adenylate kinase; 97.0 0.00063 1.4E-08 63.1 3.7 30 214-243 2-31 (215)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-80 Score=587.18 Aligned_cols=371 Identities=55% Similarity=0.879 Sum_probs=354.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccCCcE
Q psy15151 34 NSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKC 113 (431)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (431)
+.+.+.++.....+..+..++..+...++.+|+.++++++.++.+|+.++++.+.+|+. .
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~--------------------~ 86 (406)
T COG1222 27 DTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDDG--------------------R 86 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCc--------------------e
Confidence 33444445555555556667777777888899999999999999999999999999984 6
Q ss_pred EEEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHH
Q psy15151 114 AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEA 193 (431)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~ 193 (431)
++++.++++.+++++.+.++.+.++||++|++++.++.++..||.+.++.+..|++.+.|+++|++|+|++++++++++.
T Consensus 87 ~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~ 166 (406)
T COG1222 87 AIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREV 166 (406)
T ss_pred EEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCe
Q psy15151 194 VVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPA 273 (431)
Q Consensus 194 i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~ 273 (431)
|++|+.+|++|.++|+.||+|||||||||||||+||||+|++.++.|+++.+|+++++|+|++++.++++|+.|+.++||
T Consensus 167 VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPs 246 (406)
T COG1222 167 VELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPS 246 (406)
T ss_pred hcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHH
Q psy15151 274 IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 353 (431)
Q Consensus 274 vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~ 353 (431)
||||||||+++.+|.++++++++++|++|++||+++|||+..++|.||||||+++.||||++||||||+.|+||+|+.+.
T Consensus 247 IIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~g 326 (406)
T COG1222 247 IIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEG 326 (406)
T ss_pred EEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhh
Q psy15151 354 RARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 354 r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~ 424 (431)
|.+||+.|.+++++..++|++.|+..+.|+||+||+++|.+|++.|+++.+..||++||.+|++++.....
T Consensus 327 R~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 327 RAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred HHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998653
No 2
>KOG0652|consensus
Probab=100.00 E-value=2.1e-76 Score=536.47 Aligned_cols=419 Identities=86% Similarity=1.259 Sum_probs=406.6
Q ss_pred cccccc--cchhhHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeeccc
Q psy15151 13 SIWEGE--ESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLD 90 (431)
Q Consensus 13 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (431)
+.|..+ +.+++++-+++.+++..|.+.++.++..++.+..+++.+.+.++++|.+..+.+.--+.+|+.++.+.+.+|
T Consensus 3 ~~~~~~~~~~~~~e~~~mste~i~~rtrlldnEirI~~sev~ri~he~~~~~ekIkeN~EkIk~Nk~LPYLV~NvvE~ld 82 (424)
T KOG0652|consen 3 TAMALEEEDALDQEILSMSTEEIISRTRLLDNEIRIMKSEVQRINHELQAMKEKIKENTEKIKVNKQLPYLVSNVVELLD 82 (424)
T ss_pred chhhccchhhhhhhhhhccHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhhccccCchHHhhHHHHhc
Confidence 345544 468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc-cccccccccccccCCcEEEEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhc
Q psy15151 91 VDPQDT-EEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEV 169 (431)
Q Consensus 91 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 169 (431)
.+.... ...|+.+++....++.+++++.++++.+|+++.+.++.++++|||.|+|+++++.+++.||.+++.++..|++
T Consensus 83 ~~~~~~~e~sg~n~~ld~qrkgkcaViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMev 162 (424)
T KOG0652|consen 83 MDPNDDEEDSGANIDLDSQRKGKCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEV 162 (424)
T ss_pred CCcccchhccCCcccccccccceeEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeee
Confidence 877666 4448889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 170 ~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
.+.|...|.+|+|++++++++.+++.+|+.|++.|.++|+.||+++|+|||||||||++||+.|.+.+..|+.+.++.++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 250 QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 250 ~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
+.|+|++.+.++..|..|+..+|+||||||+|.++.+|+++...+++++|++++++|+++||+.+...+.||++||+.+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Q psy15151 330 LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTH 409 (431)
Q Consensus 330 l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ 409 (431)
+||+++|+||+|+.|+||.|+.+.|..|++.|.++++..+++++++++..+++|+|++.+++|-+|++.|++++...|+.
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~h 402 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTH 402 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCC
Q psy15151 410 EDFMDAIMEVQAKKKANLNYYA 431 (431)
Q Consensus 410 ed~~~Al~~~~~~~~~~~~~~~ 431 (431)
+||.+++.+++.+++.++.||+
T Consensus 403 eDfmegI~eVqakKka~l~yya 424 (424)
T KOG0652|consen 403 EDFMEGILEVQAKKKASLNYYA 424 (424)
T ss_pred HHHHHHHHHHHHhhhhcccccC
Confidence 9999999999999999999997
No 3
>KOG0727|consensus
Probab=100.00 E-value=1.5e-67 Score=476.81 Aligned_cols=384 Identities=42% Similarity=0.771 Sum_probs=372.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCcccccccccccc
Q psy15151 28 MSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDA 107 (431)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (431)
....++.-++++++.+++.++-+-+-++++.++++.+.-+.+++.+++++.|+.+|++.+.+|.+
T Consensus 25 ~~~~dly~r~k~le~~le~l~vqe~yik~e~~~lkre~~~aqeevkriqsvplvigqfle~vdqn--------------- 89 (408)
T KOG0727|consen 25 LDKEDLYVRYKKLERELELLEVQEDYIKDEQRNLKRELLHAQEEVKRIQSVPLVIGQFLEAVDQN--------------- 89 (408)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhhcc---------------
Confidence 34567889999999999999999999999999999999999999999999999999999999985
Q ss_pred ccCCcEEEEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHH
Q psy15151 108 QRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQI 187 (431)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i 187 (431)
..++...++..||+.+.+.++.+.++|+..|++.+.+...++.+|++.+..+..|...+.|+++|.+|+|++-++
T Consensus 90 -----t~ivgsttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qk 164 (408)
T KOG0727|consen 90 -----TAIVGSTTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQK 164 (408)
T ss_pred -----CceeecccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhH
Confidence 677888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHH
Q psy15151 188 QELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALA 267 (431)
Q Consensus 188 ~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a 267 (431)
+++++++++|+.+.++|.+.|+.||+|+|+|||||||||+||+++|+...+.|+++.+++++.+|.|++++.++.+|..|
T Consensus 165 qeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrla 244 (408)
T KOG0727|consen 165 QEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA 244 (408)
T ss_pred HHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcC
Q psy15151 268 KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFP 347 (431)
Q Consensus 268 ~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~ 347 (431)
+.++|+||||||||.++.+|.+.++++++++|++|+++|++|||++...++.|||+||+.+.+||+++||||+|+.|+||
T Consensus 245 kenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefp 324 (408)
T KOG0727|consen 245 KENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 324 (408)
T ss_pred hccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhccc
Q psy15151 348 HPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKANL 427 (431)
Q Consensus 348 ~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~~~~ 427 (431)
.|+..+++-++.....++++++++|++.+..+-+..+|++|.++|++|++.|.+.++..|...||.+|+..+........
T Consensus 325 lpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~~~~~~ 404 (408)
T KOG0727|consen 325 LPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKKDETQF 404 (408)
T ss_pred CCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred CCCC
Q psy15151 428 NYYA 431 (431)
Q Consensus 428 ~~~~ 431 (431)
.||.
T Consensus 405 ~fyk 408 (408)
T KOG0727|consen 405 EFYK 408 (408)
T ss_pred hccC
Confidence 8884
No 4
>KOG0726|consensus
Probab=100.00 E-value=1.7e-65 Score=471.44 Aligned_cols=363 Identities=50% Similarity=0.822 Sum_probs=348.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccCCcEEEEecCCCce
Q psy15151 44 IKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQT 123 (431)
Q Consensus 44 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (431)
.-.+++|+-+.++.++....+.++.+...+.|+..|..++++.+++|++ ++++..+.++.
T Consensus 71 yLLMEEEFI~NQe~~k~~e~~~ee~r~~vd~lRGtPmsvg~leEiidd~--------------------haivst~~g~e 130 (440)
T KOG0726|consen 71 YLLMEEEFIRNQERLKPQEEKQEEERSKVDDLRGTPMSVGTLEEIIDDN--------------------HAIVSTSVGSE 130 (440)
T ss_pred HHHHHHHHHhhccccCCchhhhHHHHhHHHhhcCCccccccHHHHhcCC--------------------ceEEecccCch
Confidence 3346677777777777777788888899999999999999999999984 88999999999
Q ss_pred EEEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHH
Q psy15151 124 YFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEK 203 (431)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~ 203 (431)
+|+++.+.||++.+.||++|.++.....++..|....++.+..|+++..|..+|.||+|++.+++++.+.+++|+.||+.
T Consensus 131 ~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~ 210 (440)
T KOG0726|consen 131 YYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEY 210 (440)
T ss_pred heeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy15151 204 FVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAI 283 (431)
Q Consensus 204 ~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l 283 (431)
|...|+.||++|+|||+||||||.||+|+|++..+.|+++.+++++++|.|++++.++++|..|..++|+|+||||||++
T Consensus 211 YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAi 290 (440)
T KOG0726|consen 211 YEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAI 290 (440)
T ss_pred HHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHh
Q psy15151 284 GTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSR 363 (431)
Q Consensus 284 ~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~ 363 (431)
+.+|.++++++.+++|++++++|+++|+|++.+.|.|||+||+.+.|||+++||||+|+.|+||.||...++.||.+|..
T Consensus 291 GtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs 370 (440)
T KOG0726|consen 291 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS 370 (440)
T ss_pred ccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhcc
Q psy15151 364 KMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKAN 426 (431)
Q Consensus 364 ~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~~~ 426 (431)
++.+..+++++.+...-+.+||+||.++|.+|.+.|++..+..|+++||..|.+.+..++...
T Consensus 371 ~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K~~g 433 (440)
T KOG0726|consen 371 RMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKKKEG 433 (440)
T ss_pred ccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999999999887654
No 5
>KOG0728|consensus
Probab=100.00 E-value=3.3e-63 Score=448.06 Aligned_cols=374 Identities=46% Similarity=0.735 Sum_probs=355.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccC
Q psy15151 31 DDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRK 110 (431)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (431)
+-....+..++.++..-.+.+.+|+.+.+.+..++.-++++++.++.+...++++.+.++.
T Consensus 20 ~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~gsyvgev~k~m~k------------------- 80 (404)
T KOG0728|consen 20 QYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEPGSYVGEVVKAMGK------------------- 80 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcchHHHHHHhcCc-------------------
Confidence 3345567777888888888999999999999999999999999999999999999888877
Q ss_pred CcEEEEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHH
Q psy15151 111 GKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQEL 190 (431)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l 190 (431)
..++++......|.+.+...++...++|+.+|++..+++.....||...++.+..|-+...|+.+|+-++|++.+++++
T Consensus 81 -~kVLVKvhpegKyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIkeI 159 (404)
T KOG0728|consen 81 -KKVLVKVHPEGKYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEI 159 (404)
T ss_pred -ceEEEEEcCCCcEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHHH
Confidence 3677776666678888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhC
Q psy15151 191 IEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 270 (431)
Q Consensus 191 ~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~ 270 (431)
.+.+.+|.+||++|..+|+..|+++|||||||||||.||+++|+...+.|+++++++++++|+|++.+.++.+|-.|+.+
T Consensus 160 kEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmareh 239 (404)
T KOG0728|consen 160 KEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREH 239 (404)
T ss_pred HHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCC
Q psy15151 271 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 350 (431)
Q Consensus 271 ~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~ 350 (431)
+|+|||+||||.++..|.+++.++++++|++++++|+++|+|....++.||++||+.+.+||+++||||+|+.|+||+|+
T Consensus 240 apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~ 319 (404)
T KOG0728|consen 240 APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 319 (404)
T ss_pred CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhh
Q psy15151 351 EEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 351 ~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~ 424 (431)
.+.|.+|++.|.+++++...+++..+|....|.+|+++..+|.+|+++|+++.+..||.|||.-|..+++.+..
T Consensus 320 e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 320 EEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred HHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987644
No 6
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=9e-59 Score=464.90 Aligned_cols=382 Identities=41% Similarity=0.748 Sum_probs=363.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCcccccccccccccc
Q psy15151 30 TDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQR 109 (431)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (431)
...++++++.++.++..++.++..++.+++.+++++..+++++++++.+|+.++++.+.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 78 (398)
T PTZ00454 17 ERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDS------------------ 78 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcC------------------
Confidence 45567777888889999999999999999999999999999999999999999999999987
Q ss_pred CCcEEEEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHH
Q psy15151 110 KGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQE 189 (431)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~ 189 (431)
...+++.++++.+++.+.+.++.+.++||+.|.++..+..++..+|...++.+..|.+.+.|.++|++|+|++.++++
T Consensus 79 --~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~ 156 (398)
T PTZ00454 79 --NYGIVSSTSGSNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQE 156 (398)
T ss_pred --CEEEEEcCCCCEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHh
Q psy15151 190 LIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKE 269 (431)
Q Consensus 190 l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~ 269 (431)
+.+.+..|+.+|+.|..+|+.+|+++|||||||||||++|+++|+.++.+|+.+.++++..+++|++...++.+|..++.
T Consensus 157 l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 157 IREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARE 236 (398)
T ss_pred HHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCC
Q psy15151 270 KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHP 349 (431)
Q Consensus 270 ~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p 349 (431)
..|+||||||||.++.+|.+...+.+.++++.+.++++.++++....+++||+|||+++.+||+++|+||||..|+|++|
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 99999999999999998877666677889999999999999988888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhcccCC
Q psy15151 350 NEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKANLNY 429 (431)
Q Consensus 350 ~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~~~~~~ 429 (431)
+.++|..|++.++.++.+..++++..++..+.||+|+||.++|++|++.|+++++..|+.+||.+|++++.......++|
T Consensus 317 ~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~~~~~~~ 396 (398)
T PTZ00454 317 DRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKTDRDYDF 396 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhccccchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred CC
Q psy15151 430 YA 431 (431)
Q Consensus 430 ~~ 431 (431)
|.
T Consensus 397 ~~ 398 (398)
T PTZ00454 397 YS 398 (398)
T ss_pred cC
Confidence 84
No 7
>KOG0729|consensus
Probab=100.00 E-value=9.1e-58 Score=415.99 Aligned_cols=330 Identities=47% Similarity=0.800 Sum_probs=304.4
Q ss_pred cCCceeeeeeecccCCCCCccccccccccccccCCcEEEEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcC
Q psy15151 77 NLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETL 156 (431)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (431)
..|++++.+.++++.+..+. ..+++...-..+.+.....+.+..+..|.+|+|++..+.+.-.|
T Consensus 92 eqplqvarctkii~~~~~d~----------------~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lpl 155 (435)
T KOG0729|consen 92 EQPLQVARCTKIISGNSEDP----------------KYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPL 155 (435)
T ss_pred cCCceeheeeeecCCCCCCc----------------ceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccC
Confidence 45777777777766542111 12222222223445555667778899999999999999999999
Q ss_pred chhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 157 PAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
|+..++.+..|.+++.|+++|.+++|..++++.+++.++.|+.+|+.|.++|+.||+++|+|||||||||.+|+++|+..
T Consensus 156 ppkidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 156 PPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred CCCCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC
Q psy15151 237 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTA 316 (431)
Q Consensus 237 ~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~ 316 (431)
++.|+++-+|+++++|+|++.+.++.+|+.|+....|||||||||.+++.|.+.+.+++.++|++++++++++|+++..+
T Consensus 236 dacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprg 315 (435)
T KOG0729|consen 236 DACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 315 (435)
T ss_pred CceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15151 317 DIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAG 396 (431)
Q Consensus 317 ~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~ 396 (431)
++.|+++||+|+.|||+++||||+|+.++|..|+.+.|..|++.|.+.+.+..++-++.|+..+...+|++|+++|.+|.
T Consensus 316 nikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteag 395 (435)
T KOG0729|consen 316 NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAG 395 (435)
T ss_pred CeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHHh
Q psy15151 397 MIALRRGAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 397 ~~A~~~~~~~It~ed~~~Al~~~~~~ 422 (431)
++|++..+...|..||.+|++++...
T Consensus 396 mfairarrk~atekdfl~av~kvvkg 421 (435)
T KOG0729|consen 396 MFAIRARRKVATEKDFLDAVNKVVKG 421 (435)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999864
No 8
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.5e-55 Score=444.18 Aligned_cols=373 Identities=47% Similarity=0.781 Sum_probs=348.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccCC
Q psy15151 34 NSRTRLLDNEIKIMKSEVMRISHEL--QAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKG 111 (431)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (431)
+-++.+++..+..|..+.+.++.+. ..++.+...+++++++++.+|+.++++.+.+|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 116 (438)
T PTZ00361 57 RLRLLKLERIKDYLLLEEEFITNQEAQKPAQEKNEAELKKVDDLRGSPLSVGTLEEIIDE-------------------- 116 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCCcEEEEEEEEeCC--------------------
Confidence 3456666667777776666666555 477889999999999999999999999999987
Q ss_pred cEEEEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHH
Q psy15151 112 KCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELI 191 (431)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~ 191 (431)
...+++.++++.+++.+.+.++.+.++||+.|.++..++.++..++...++.+..|.+...|..+|++|+|++.+++.+.
T Consensus 117 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~ 196 (438)
T PTZ00361 117 NHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIK 196 (438)
T ss_pred CeEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCC
Q psy15151 192 EAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 271 (431)
Q Consensus 192 ~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~ 271 (431)
+.+..|+.+|+.|..+|+.++.++|||||||||||++|+++|++++.+|+.+.++++.++|.|++...++.+|..++.+.
T Consensus 197 e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~ 276 (438)
T PTZ00361 197 EAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENA 276 (438)
T ss_pred HHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCH
Q psy15151 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE 351 (431)
Q Consensus 272 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~ 351 (431)
|+||||||||.++.+|.+...+++.++++.++++|..++++....++.||+|||+++.+|++++|+||||+.|+|++|+.
T Consensus 277 P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 277 PSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred CcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH
Confidence 99999999999999887777777888999999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhcc
Q psy15151 352 EARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKAN 426 (431)
Q Consensus 352 ~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~~~ 426 (431)
++|.+||+.++.++.+..++++..++..+.|++|+||.++|++|++.|+++++..|+.+||..|+++++..++..
T Consensus 357 ~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~~~~~ 431 (438)
T PTZ00361 357 KTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYRKKGN 431 (438)
T ss_pred HHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765543
No 9
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.2e-53 Score=429.54 Aligned_cols=376 Identities=49% Similarity=0.814 Sum_probs=352.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccC
Q psy15151 31 DDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRK 110 (431)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (431)
..+.++++.++.+++.++.++.++..+.+..+.+++.++++++.++.+|..++.+.+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------ 65 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDG------------------ 65 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCC------------------
Confidence 45667778888899999999999999999999999999999999999999999999999873
Q ss_pred CcEEEEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHH
Q psy15151 111 GKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQEL 190 (431)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l 190 (431)
..+++.+++..+++.+...++...+++|+.|.++..+..+...+|...+..+..+.+...|.+.|++|+|++++++.+
T Consensus 66 --~~~v~~~~g~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l 143 (389)
T PRK03992 66 --RVVVKSSGGPQFLVNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREV 143 (389)
T ss_pred --eEEEEECCCCEEEEeccccCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHH
Confidence 567777777778888888888899999999999999999999999998888888999999999999999999999999
Q ss_pred HHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhC
Q psy15151 191 IEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 270 (431)
Q Consensus 191 ~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~ 270 (431)
.+.+..|+.+++.|..+|+.+|+++|||||||||||++|+++|++++.+|+.++++++...|.|++...++.+|..++..
T Consensus 144 ~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~ 223 (389)
T PRK03992 144 REAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREK 223 (389)
T ss_pred HHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCC
Q psy15151 271 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 350 (431)
Q Consensus 271 ~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~ 350 (431)
.|+||||||+|.++..+.+....++.++++.+.++++.++++...+++.||+|||+++.+|++++|||||+..|.|++|+
T Consensus 224 ~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~ 303 (389)
T PRK03992 224 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPD 303 (389)
T ss_pred CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCC
Confidence 99999999999999988776666778899999999999998888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhcc
Q psy15151 351 EEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKAN 426 (431)
Q Consensus 351 ~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~~~ 426 (431)
.++|.+|++.+++++.+..++++..++..+.||+|+||.++|++|++.|.+++...|+.+||.+|++.+++.....
T Consensus 304 ~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 304 EEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccc
Confidence 9999999999999999888899999999999999999999999999999999999999999999999999876554
No 10
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=7.8e-51 Score=407.30 Aligned_cols=360 Identities=49% Similarity=0.822 Sum_probs=335.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccCCcEEEEecC
Q psy15151 40 LDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTS 119 (431)
Q Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (431)
++.+++.|+.++..++.+.+..+++++.+++++++++.+|..++++.+.++.. ..+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 63 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDDN--------------------RVVVKSS 63 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCC--------------------EEEEEeC
Confidence 44566667777777777777778888889999999999999999999999973 6778888
Q ss_pred CCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhcccc
Q psy15151 120 TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMT 199 (431)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~ 199 (431)
++..+++.+.+.++...+++|+.|.++..+..+...++...++....+.+...|.+.|++|+|++++++.+.+++..|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~ 143 (364)
T TIGR01242 64 TGPNFVVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLK 143 (364)
T ss_pred CCCEEEEeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999889999988888889999999999999999999999999999999999
Q ss_pred ChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEcc
Q psy15151 200 HKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDE 279 (431)
Q Consensus 200 ~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDE 279 (431)
+++.|..+|+.+|+++|||||||||||++|+++|+.++.+|+.+.++++...++|+....++.+|..++...|+||||||
T Consensus 144 ~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDE 223 (364)
T TIGR01242 144 HPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDE 223 (364)
T ss_pred CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHH
Q psy15151 280 LDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQ 359 (431)
Q Consensus 280 id~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~ 359 (431)
+|.++..+.+...+++++.++.+.+++..++++...+++.||+|||+++.++++++|+|||+..|.|+.|+.++|.+|++
T Consensus 224 iD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~ 303 (364)
T TIGR01242 224 IDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILK 303 (364)
T ss_pred hhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHH
Confidence 99999888776666788899999999999998877789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q psy15151 360 IHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 360 ~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~ 419 (431)
.++.++.+..++++..++..+.||+|+||.++|++|++.|.++++..|+.+||.+|++++
T Consensus 304 ~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 304 IHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 999999888889999999999999999999999999999999999999999999999876
No 11
>KOG0730|consensus
Probab=100.00 E-value=1.8e-52 Score=422.77 Aligned_cols=252 Identities=45% Similarity=0.761 Sum_probs=239.6
Q ss_pred ccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 170 ~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
.+.|+++|+||+|+++.+..+.+.|.+|+.||+.|.++|+.||++||||||||||||++||++|++.+.+|+.+.+++++
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 250 QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 250 ~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
++|+|++++.++.+|+.|+..+|+||||||||.++..|+++.. ....++|.++|++|||+....+|+||++||+|+.
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 9999999999999999999999999999999999999964433 2344889999999999999999999999999999
Q ss_pred CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCCc
Q psy15151 330 LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG--AAIV 407 (431)
Q Consensus 330 l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~--~~~I 407 (431)
+|++++||||||+.|++|+|+.+.|.+|++.+++++++.+++|+..|+..|.||||+||.++|++|+..|+++. ...|
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i 662 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEI 662 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985 5679
Q ss_pred CHHHHHHHHHHHHHhhh
Q psy15151 408 THEDFMDAIMEVQAKKK 424 (431)
Q Consensus 408 t~ed~~~Al~~~~~~~~ 424 (431)
+.+||.+|++.++++-.
T Consensus 663 ~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 663 TWQHFEEALKAVRPSLT 679 (693)
T ss_pred cHHHHHHHHHhhcccCC
Confidence 99999999999987643
No 12
>KOG0651|consensus
Probab=100.00 E-value=8.3e-52 Score=384.35 Aligned_cols=355 Identities=42% Similarity=0.692 Sum_probs=330.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccCCcEEEEecCCCceEEEee
Q psy15151 49 SEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPV 128 (431)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (431)
..+....+....+.+++..-....+.+++....++.+++.+++ +..+++.++++.|.+.+
T Consensus 24 ~~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~--------------------~~~iVK~s~Gpryvvg~ 83 (388)
T KOG0651|consen 24 SALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLED--------------------EKFIVKASSGPRYVVGC 83 (388)
T ss_pred hHHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhccc--------------------cceEeecCCCCcEEEEc
Confidence 4444455555566666666666777788888878888877776 57899999999999999
Q ss_pred cccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcC
Q psy15151 129 IGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLG 208 (431)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g 208 (431)
...+|..++++|..++++..+..+...+|.+.+ .+..|......+++|++++|.-.++.++.+.+..|+.+|++|.++|
T Consensus 84 ~~~~D~~~i~~G~rv~ldittltIm~~lprevd-~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvg 162 (388)
T KOG0651|consen 84 RRSVDKEKIARGTRVVLDITTLTIMRGLPREVD-LVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVG 162 (388)
T ss_pred ccccchhhhccCceeeeeeeeeehhcccchHHH-HHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccC
Confidence 999999999999999999999999999999999 8888888888899999999999999999999999999999999999
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCC
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~ 288 (431)
+.+|++++||||||||||.+|+++|...+.+|+.+..+++.++|+|++.+.+++.|..|+...|||||+||||++++++.
T Consensus 163 Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~ 242 (388)
T KOG0651|consen 163 IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRF 242 (388)
T ss_pred CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC
Q psy15151 289 DSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS 368 (431)
Q Consensus 289 ~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~ 368 (431)
+..+..+.+++++|.++++++++++..++|.+|+|||+|+.|+|+|+||||+|+.+++|.|+...|..|++.+...+...
T Consensus 243 se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~ 322 (388)
T KOG0651|consen 243 SEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFH 322 (388)
T ss_pred ccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhh
Q psy15151 369 PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 369 ~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~ 424 (431)
..++.+.+.+..+||+|+|+++.|++|.+.|++..+..+-+|||..+++++...++
T Consensus 323 Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~~kk 378 (388)
T KOG0651|consen 323 GEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQADAKK 378 (388)
T ss_pred ccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999876543
No 13
>KOG0733|consensus
Probab=100.00 E-value=9.5e-51 Score=404.84 Aligned_cols=252 Identities=39% Similarity=0.675 Sum_probs=236.7
Q ss_pred cccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh
Q psy15151 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL 248 (431)
Q Consensus 169 ~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l 248 (431)
...+|+++|+||+|+++...++..+|..|+++|+.|..+|+..|.|||||||||||||.||||+|++.+.+|+.|.++++
T Consensus 502 F~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPEL 581 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPEL 581 (802)
T ss_pred ceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 249 VQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 249 ~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
+++|+|++++.+|++|..|+..+||||||||||.|+++|++.... ...+.++|||.+|||.....+|+||++||+|+
T Consensus 582 lNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~---~s~RvvNqLLtElDGl~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 582 LNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSS---VSSRVVNQLLTELDGLEERRGVYVIAATNRPD 658 (802)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCch---hHHHHHHHHHHHhcccccccceEEEeecCCCc
Confidence 999999999999999999999999999999999999999776643 34588999999999999999999999999999
Q ss_pred CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHh--cCCCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhC-
Q psy15151 329 ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSR--KMNVSPDVNYEELSRSTD--DFNGAQCKAVCVEAGMIALRRG- 403 (431)
Q Consensus 329 ~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~--~~~~~~~~~~~~la~~~~--g~s~~di~~l~~~A~~~A~~~~- 403 (431)
.+||+++||||||..+++++|+.++|..|++.+.+ +..++.++|++.|+..+. ||+|+||..+|++|.+.|+++.
T Consensus 659 iIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~ 738 (802)
T KOG0733|consen 659 IIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESL 738 (802)
T ss_pred ccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 778889999999998765 9999999999999999999872
Q ss_pred ---------------CCCcCHHHHHHHHHHHHHhh
Q psy15151 404 ---------------AAIVTHEDFMDAIMEVQAKK 423 (431)
Q Consensus 404 ---------------~~~It~ed~~~Al~~~~~~~ 423 (431)
...+|..||.+|+.+++++-
T Consensus 739 ~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 739 FEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred hhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 12478889999999998753
No 14
>KOG0734|consensus
Probab=100.00 E-value=3.9e-47 Score=373.80 Aligned_cols=243 Identities=41% Similarity=0.625 Sum_probs=232.1
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
++.|+|+-|.+++++++.+.+. ++++|+.|.++|=.-|+||||.||||||||+||||+|.+.+.||++..+++|-+.|+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 6789999999999999998766 699999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChh
Q psy15151 254 GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPA 333 (431)
Q Consensus 254 g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~ 333 (431)
|.+.+.+|.+|..|+.++||||||||||.++++|..... + ....+++|+|.+||||..+.+++||++||.|+.||++
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~--~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ--H-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKA 455 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH--H-HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHH
Confidence 999999999999999999999999999999999844322 2 5678999999999999999999999999999999999
Q ss_pred hhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q psy15151 334 LLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413 (431)
Q Consensus 334 l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~ 413 (431)
|.||||||++|.+|.||...|.+|++.|++++.++.++|+..||+-+.||+|+||.+++++|+..|...+...|++.|++
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE 535 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLE 535 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy15151 414 DAIMEVQ 420 (431)
Q Consensus 414 ~Al~~~~ 420 (431)
.|-+++.
T Consensus 536 ~akDrIl 542 (752)
T KOG0734|consen 536 FAKDRIL 542 (752)
T ss_pred hhhhhee
Confidence 9998875
No 15
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=9.6e-45 Score=370.32 Aligned_cols=381 Identities=29% Similarity=0.480 Sum_probs=309.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeec-ccCCCCCcccc--------cccccccc
Q psy15151 37 TRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIEL-LDVDPQDTEED--------GAVVDLDA 107 (431)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~ 107 (431)
+..++.++..|..++.+|.+.++..++++..++++++++..+|..++++... .+...++.... .+.++...
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~ 82 (512)
T TIGR03689 3 LRELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFLQTAIDDETAEVFTAGRRMRVTVSPNVNAAE 82 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEeccCCCeEEEEeCCceEEEEeCCCCCHHH
Confidence 3456788888999999999999999999999999999999999999999976 44322221111 11122222
Q ss_pred --------------------------------ccCCcEEEEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhc
Q psy15151 108 --------------------------------QRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILET 155 (431)
Q Consensus 108 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (431)
..+....+++...+..+|+.+...+..+.+++|+.+.++..+...++.
T Consensus 83 l~~g~~v~l~e~~~~v~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 162 (512)
T TIGR03689 83 LVPGQTVRLNEALQVVEARDFETVGEIATLKEVLGDGRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEA 162 (512)
T ss_pred CCCCCEEEECCcceeeccCCCCCCCceEEEEEEeCCCeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhc
Confidence 223345566666777788888888888899999999999999988888
Q ss_pred CchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 156 LPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++.. .+..+.....|.++|++|+|++.+++.+.+.+..|+.+++.|..+|+.+|+++|||||||||||++|+++|++
T Consensus 163 ~~~~---~~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 163 VPKA---EVEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCHh---HHhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 8864 3555667788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCc----------eEEeehhhhhHhhhcchHHHHHHHHHHHHhC----CCeEEEEccccccccCCCCCCCcCcHHHHHH
Q psy15151 236 TKST----------FLKLAGPQLVQMFIGDGAKLVRDAFALAKEK----APAIIFIDELDAIGTKRFDSEKAGDREVQRT 301 (431)
Q Consensus 236 ~~~~----------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~ 301 (431)
++.+ |+.+.++++.++|.|+++..++.+|..++.. .|+||||||+|.++.+|..... .+ .....
T Consensus 240 L~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s-~d-~e~~i 317 (512)
T TIGR03689 240 LAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS-SD-VETTV 317 (512)
T ss_pred hccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc-ch-HHHHH
Confidence 7543 6677888999999999999999999988763 6999999999999988743221 11 12356
Q ss_pred HHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhc-CCCC---------CCC
Q psy15151 302 MLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK-MNVS---------PDV 371 (431)
Q Consensus 302 l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~-~~~~---------~~~ 371 (431)
+.++|+.++++....+++||+|||+++.+||+++||||||.+|+|++|+.++|.+|++.++.. +.+. ...
T Consensus 318 l~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a 397 (512)
T TIGR03689 318 VPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREA 397 (512)
T ss_pred HHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHH
Confidence 679999999988888999999999999999999999999999999999999999999999864 2331 111
Q ss_pred CHHHHHH-----------------------------HcCCCCHHHHHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHH
Q psy15151 372 NYEELSR-----------------------------STDDFNGAQCKAVCVEAGMIALRR----GAAIVTHEDFMDAIME 418 (431)
Q Consensus 372 ~~~~la~-----------------------------~~~g~s~~di~~l~~~A~~~A~~~----~~~~It~ed~~~Al~~ 418 (431)
+...++. .++.+||++|.++|.+|...|+.+ +...|+.+|+..|+.+
T Consensus 398 ~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 398 TAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHH
Confidence 2222222 145578999999999999999877 3568999999999988
Q ss_pred HHHh
Q psy15151 419 VQAK 422 (431)
Q Consensus 419 ~~~~ 422 (431)
-...
T Consensus 478 e~~~ 481 (512)
T TIGR03689 478 EFRE 481 (512)
T ss_pred hhcc
Confidence 6543
No 16
>KOG0736|consensus
Probab=100.00 E-value=1.9e-46 Score=382.30 Aligned_cols=265 Identities=37% Similarity=0.687 Sum_probs=238.3
Q ss_pred hhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 164 VKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 164 ~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
...+...+.|++.|+||+|+++.+..|.+.|.+|++||++|.. |+.+..|||||||||||||.+|||+|.++...|+.|
T Consensus 658 s~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSV 736 (953)
T KOG0736|consen 658 SDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSV 736 (953)
T ss_pred hhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEee
Confidence 3444566789999999999999999999999999999999865 777788999999999999999999999999999999
Q ss_pred ehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC--CCCCeEEE
Q psy15151 244 AGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS--STADIKVI 321 (431)
Q Consensus 244 ~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~--~~~~v~vI 321 (431)
.+++++++|+|+++.++|.+|++||..+||||||||+|.++++|+.+++++. -.-+++.|+|.++|+.. +...|+||
T Consensus 737 KGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG-VMDRVVSQLLAELDgls~~~s~~VFVi 815 (953)
T KOG0736|consen 737 KGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGG-VMDRVVSQLLAELDGLSDSSSQDVFVI 815 (953)
T ss_pred cCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccc-cHHHHHHHHHHHhhcccCCCCCceEEE
Confidence 9999999999999999999999999999999999999999999977766553 35588899999999987 46789999
Q ss_pred EEeCCCCCCChhhhcCCCcceEEEcCCC-CHHHHHHHHHHHHhcCCCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Q psy15151 322 AATNRVDILDPALLRSGRLDRKIEFPHP-NEEARARIMQIHSRKMNVSPDVNYEELSRST-DDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 322 ~ttn~~~~l~~~l~r~gR~~~~i~~~~p-~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~-~g~s~~di~~l~~~A~~~A 399 (431)
++||+|+.+||+++||||||..+++.++ +.+.+..+++...+++.++.++|+.+||+.+ ..|+|+|+.++|-.|++.|
T Consensus 816 GATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~A 895 (953)
T KOG0736|consen 816 GATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAA 895 (953)
T ss_pred ecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 5567889999999999999999999999887 4689999999999999999
Q ss_pred HHhC-----------------CCCcCHHHHHHHHHHHHHhhh-cccCCC
Q psy15151 400 LRRG-----------------AAIVTHEDFMDAIMEVQAKKK-ANLNYY 430 (431)
Q Consensus 400 ~~~~-----------------~~~It~ed~~~Al~~~~~~~~-~~~~~~ 430 (431)
++|. ...|+++||.+|.+++.++.+ +++.+|
T Consensus 896 ikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~y 944 (953)
T KOG0736|consen 896 IKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRY 944 (953)
T ss_pred HHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHH
Confidence 9882 236899999999999998744 344443
No 17
>KOG0733|consensus
Probab=100.00 E-value=3.4e-45 Score=365.13 Aligned_cols=225 Identities=44% Similarity=0.750 Sum_probs=212.0
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~ 252 (431)
++++|.+|+|+++.+.++.+.+.. +.+|+.|..+|+.||+|||||||||||||+||+++|++++.||+.++++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 378999999999999999998887 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHH-HHHHHHHHHhhcCCCCC----CCeEEEEEeCCC
Q psy15151 253 IGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREV-QRTMLELLNQLDGFSST----ADIKVIAATNRV 327 (431)
Q Consensus 253 ~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~-~~~l~~lL~~~~~~~~~----~~v~vI~ttn~~ 327 (431)
.|++++.++.+|+.|....|||+||||||+++++|... ..+. ++++.|||+.||+.... .+|+||+|||+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a----qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA----QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH----HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 99999999999999999999999999999999998553 3333 36677888888877554 579999999999
Q ss_pred CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q psy15151 328 DILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402 (431)
Q Consensus 328 ~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~ 402 (431)
+.+||+|+|+||||+.|.+..|+..+|.+||+..++++.++.++|+..||..|.||.|+|+.++|.+|+..|+++
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987
No 18
>KOG0738|consensus
Probab=100.00 E-value=3.4e-44 Score=342.24 Aligned_cols=251 Identities=40% Similarity=0.617 Sum_probs=227.2
Q ss_pred cccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh
Q psy15151 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL 248 (431)
Q Consensus 169 ~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l 248 (431)
....|.+.|+||.|++++++-|.++|.+|+..|+.|..+. .|-+++|++||||||||+||||+|.+++..|+.|+.+.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 4567899999999999999999999999999999998765 567999999999999999999999999999999999999
Q ss_pred hHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCC-C---CeEEEEEe
Q psy15151 249 VQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSST-A---DIKVIAAT 324 (431)
Q Consensus 249 ~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~-~---~v~vI~tt 324 (431)
.++|-|++++.+|-+|+.|+..+|++|||||||.|+.+|++++. |..-.+.-.+||.+|||.... . -|+|+++|
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~E--HEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSE--HEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccc--hhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 99999999999999999999999999999999999999966532 333345556777777766442 2 38889999
Q ss_pred CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-
Q psy15151 325 NRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG- 403 (431)
Q Consensus 325 n~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~- 403 (431)
|.|+.||.+|+| ||...|++|.|+.+.|..+++..++.....++++++.|+..++||+|+||.++|++|.+.+.++.
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999999999962
Q ss_pred ----------------CCCcCHHHHHHHHHHHHHhhh
Q psy15151 404 ----------------AAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 404 ----------------~~~It~ed~~~Al~~~~~~~~ 424 (431)
...|+.+||..|+.+++++.+
T Consensus 438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred hcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 235899999999999998755
No 19
>KOG0731|consensus
Probab=100.00 E-value=8.9e-44 Score=369.84 Aligned_cols=248 Identities=44% Similarity=0.734 Sum_probs=234.4
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~ 252 (431)
..+.|.|+.|.++++++|.+.|. ++++|+.|.++|...|+|+||+||||||||+||||+|.+.+.||+.++++++++.+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 45899999999999999999776 79999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCC-CCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q psy15151 253 IGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFD-SEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331 (431)
Q Consensus 253 ~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~-~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~ 331 (431)
.|.....++.+|..++.++||||||||||.++..|.+ ....++.+-..+|+|+|-+||++....+|+|+++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9999999999999999999999999999999999953 233556677789999999999999999999999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Q psy15151 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHE 410 (431)
Q Consensus 332 ~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~e 410 (431)
++++||||||+.|.++.|+...|.+|++.|+++.++. +++++..++..|.||+|+||.++|++|+..|.+++...|+..
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~ 544 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTK 544 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchh
Confidence 9999999999999999999999999999999999986 788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy15151 411 DFMDAIMEVQA 421 (431)
Q Consensus 411 d~~~Al~~~~~ 421 (431)
||..|++.+..
T Consensus 545 ~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 545 DLEYAIERVIA 555 (774)
T ss_pred hHHHHHHHHhc
Confidence 99999996653
No 20
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-42 Score=352.09 Aligned_cols=249 Identities=42% Similarity=0.694 Sum_probs=240.3
Q ss_pred CCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~ 251 (431)
...+.|.|+.|.+++++++.+.|. ++++|..|..+|...|+++||+||||||||+|||++|.+.+.||+.+++|+++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 567899999999999999998666 7999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q psy15151 252 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331 (431)
Q Consensus 252 ~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~ 331 (431)
|+|-+.+.+|.+|..|++++||||||||||+++..|..+..+++.+...+++|+|.+||++..+..|+||++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999977677778888899999999999999889999999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHH
Q psy15151 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411 (431)
Q Consensus 332 ~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed 411 (431)
|+++||||||+.|.++.||...|.+|++.|+++.++..++++..+|+.|.||+|+|+.+++++|+..|.++++..|++.|
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~ 382 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRD 382 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy15151 412 FMDAIMEVQA 421 (431)
Q Consensus 412 ~~~Al~~~~~ 421 (431)
|.+|..++..
T Consensus 383 i~ea~drv~~ 392 (596)
T COG0465 383 IEEAIDRVIA 392 (596)
T ss_pred hHHHHHHHhc
Confidence 9999999874
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=8.1e-42 Score=310.68 Aligned_cols=246 Identities=33% Similarity=0.528 Sum_probs=224.3
Q ss_pred CCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~ 251 (431)
.++.+++|++|++++++...- +...+.+|+.|..+ .|++||||||||||||++||++|++...|++.++..+++..
T Consensus 115 ~~~it~ddViGqEeAK~kcrl-i~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRL-IMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHHH-HHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 458899999999999998764 44568899888776 47999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q psy15151 252 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331 (431)
Q Consensus 252 ~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~ 331 (431)
++|++.+.++++|+.|+..+|||+||||+|+++-+|.-++-.+ ++..+++.+|.++|++..+.+|+.|++||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 9999999999999999999999999999999987764333323 45678888999999999999999999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHH-HHHHHHHHHHHHhCCCCcCHH
Q psy15151 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCK-AVCVEAGMIALRRGAAIVTHE 410 (431)
Q Consensus 332 ~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~-~l~~~A~~~A~~~~~~~It~e 410 (431)
|++++ ||...|+|..|+.++|.+|++.+++++++.-+.++..++..+.|+||+||. .++..|...|+.+++..|+.+
T Consensus 269 ~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~e 346 (368)
T COG1223 269 PAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVERE 346 (368)
T ss_pred HHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHH
Confidence 99999 999999999999999999999999999999999999999999999999996 678899999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q psy15151 411 DFMDAIMEVQAKKKA 425 (431)
Q Consensus 411 d~~~Al~~~~~~~~~ 425 (431)
||..|+++-++.+..
T Consensus 347 die~al~k~r~~r~~ 361 (368)
T COG1223 347 DIEKALKKERKRRAP 361 (368)
T ss_pred HHHHHHHhhccccCC
Confidence 999999997666544
No 22
>KOG0735|consensus
Probab=100.00 E-value=4.9e-40 Score=332.77 Aligned_cols=232 Identities=37% Similarity=0.609 Sum_probs=217.6
Q ss_pred hcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhh
Q psy15151 168 EVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQ 247 (431)
Q Consensus 168 ~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~ 247 (431)
.........|.+|+|+.++++.+.+.+.+|.++|.+|.+.+++.+.|||||||||||||+||.++|..++..|+.+.+++
T Consensus 657 k~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPE 736 (952)
T KOG0735|consen 657 KLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPE 736 (952)
T ss_pred cccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHH
Confidence 33344458899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 248 LVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 248 l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
+.++|+|.++..+|.+|+.|+...||||||||+|.++++|+..+++-. -+.++|+|.++||...-.+|.|+++|.+|
T Consensus 737 lL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~Egl~GV~i~aaTsRp 813 (952)
T KOG0735|consen 737 LLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAEGLDGVYILAATSRP 813 (952)
T ss_pred HHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCch---HHHHHHHHHhhccccccceEEEEEecCCc
Confidence 999999999999999999999999999999999999999965544332 37888999999999888999999999999
Q ss_pred CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q psy15151 328 DILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402 (431)
Q Consensus 328 ~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~ 402 (431)
+.+||+++||||+|+.+.-+.|+..+|.+|+....+.+....++|++.+|..|+||+|+|+..+|..|-+.|..+
T Consensus 814 dliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 814 DLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred cccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888765
No 23
>KOG0739|consensus
Probab=100.00 E-value=4.9e-41 Score=310.70 Aligned_cols=235 Identities=36% Similarity=0.651 Sum_probs=211.9
Q ss_pred HHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceE
Q psy15151 162 ARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFL 241 (431)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i 241 (431)
..+...-+.+.|++.|++|.|++.++++|.++|.+|++.|.+|..-. .|-++|||||||||||++||+++|.+.+..|+
T Consensus 117 ~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFF 195 (439)
T KOG0739|consen 117 SALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEANSTFF 195 (439)
T ss_pred HHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhcCCceE
Confidence 44555567789999999999999999999999999999999997644 46689999999999999999999999999999
Q ss_pred EeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCC-CCeEE
Q psy15151 242 KLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSST-ADIKV 320 (431)
Q Consensus 242 ~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~-~~v~v 320 (431)
.++.++++++|+|++++.++.+|+.||.+.|+||||||||.+|+.|++..+.+.+ ++-.++|-+|.|.... .+++|
T Consensus 196 SvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasR---RIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 196 SVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASR---RIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred EeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHH---HHHHHHHHhhhccccCCCceEE
Confidence 9999999999999999999999999999999999999999999999776655443 5666788888877654 68999
Q ss_pred EEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 321 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 321 I~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
+++||.|+.||.+++| ||+..|++|.|+...|..+++.++...+.. .+.|+.+|+..|+||+|+||.-+++.|.+..
T Consensus 273 LgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmeP 350 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEP 350 (439)
T ss_pred EecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhh
Confidence 9999999999999999 999999999999999999999999876655 5678999999999999999999999999887
Q ss_pred HHh
Q psy15151 400 LRR 402 (431)
Q Consensus 400 ~~~ 402 (431)
.++
T Consensus 351 vRk 353 (439)
T KOG0739|consen 351 VRK 353 (439)
T ss_pred HHH
Confidence 776
No 24
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.6e-40 Score=355.69 Aligned_cols=252 Identities=47% Similarity=0.784 Sum_probs=232.8
Q ss_pred cCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 171 ~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
..|.+.|++|+|++..++.+.+.+.+|+.+++.|..+|+.+++++|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 251 MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 251 ~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
+|+|+++..++.+|..|+...|+||||||||.+++.|..... +....+.+.++|..++++....+++||+|||+++.+
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDIL 603 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhC
Confidence 999999999999999999999999999999999988753322 223457788899999998888899999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------
Q psy15151 331 DPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG------- 403 (431)
Q Consensus 331 ~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~------- 403 (431)
|++++||||||..|++|+|+.++|.+||+.+.+++.+..++++..++..+.||+|+||.++|++|++.|+++.
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~ 683 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKE 683 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998852
Q ss_pred -----------CCCcCHHHHHHHHHHHHHhhh
Q psy15151 404 -----------AAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 404 -----------~~~It~ed~~~Al~~~~~~~~ 424 (431)
...|+.+||..|+.+++++-.
T Consensus 684 ~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 684 KLEVGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred hhhcccccccccCcccHHHHHHHHHHcCCCCC
Confidence 126999999999999988643
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-40 Score=340.14 Aligned_cols=249 Identities=45% Similarity=0.730 Sum_probs=233.1
Q ss_pred cCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 171 ~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
..|.+.|.+++|++..++.+.+.+..++.+++.|...|+.+++++|||||||||||++|+++|.+++.+|+.++++++++
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 251 MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 251 ~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
+|+|++++.++.+|..|+...||||||||+|.+++.|+++..+.. .+.+.+++..+++.....+|+||+|||+|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~---~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSG---RRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHH---HHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 999999999999999999999999999999999999865543322 47888999999998888999999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCC--CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-CCCc
Q psy15151 331 DPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNV--SPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG-AAIV 407 (431)
Q Consensus 331 ~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~--~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~-~~~I 407 (431)
|++++||||||..++|++|+..+|.+|++.+++.... ..++++..++..+.||+|+||..+|++|.+.+.++. ...|
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999986554 578999999999999999999999999999999998 7789
Q ss_pred CHHHHHHHHHHHHHh
Q psy15151 408 THEDFMDAIMEVQAK 422 (431)
Q Consensus 408 t~ed~~~Al~~~~~~ 422 (431)
+.+||.+|++.+.+.
T Consensus 472 ~~~~~~~a~~~~~p~ 486 (494)
T COG0464 472 TLDDFLDALKKIKPS 486 (494)
T ss_pred cHHHHHHHHHhcCCC
Confidence 999999999997665
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=5.6e-39 Score=333.62 Aligned_cols=251 Identities=43% Similarity=0.738 Sum_probs=233.1
Q ss_pred ccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 170 ~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
...|.++|++|+|+++.+.++.+.+.. +.+++.|...|..+++++|||||||||||++|+++|.+.+.+|+.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 345789999999999999999987764 8999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 250 QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 250 ~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
+.+.|.+...++.+|..++...|+||||||||.++.++.......+.+....+.++|..++++....+++||+|||+++.
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV 205 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh
Confidence 99999999999999999999999999999999999887654444466677889999999999888889999999999999
Q ss_pred CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Q psy15151 330 LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTH 409 (431)
Q Consensus 330 l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ 409 (431)
+||+++||||||..|.++.|+.++|.+|++.++++.....++++..++..+.||+++||.++|++|+..|.+++...|+.
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~ 285 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITM 285 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999999998888778899999999999999999999999999999999889999
Q ss_pred HHHHHHHHHHHH
Q psy15151 410 EDFMDAIMEVQA 421 (431)
Q Consensus 410 ed~~~Al~~~~~ 421 (431)
+||..|+..+..
T Consensus 286 ~~l~~a~~~~~~ 297 (495)
T TIGR01241 286 NDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHHhc
Confidence 999999998753
No 27
>KOG0737|consensus
Probab=100.00 E-value=3.2e-39 Score=308.20 Aligned_cols=243 Identities=36% Similarity=0.613 Sum_probs=220.0
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcC-CCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLG-IQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g-~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~ 252 (431)
.++|.+|+|++..++.+.+.|.+|+.+|++|...+ +.|++|||||||||||||++|+++|.+.+++|+.+.++.+.+++
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 57899999999999999999999999999997444 57889999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC--eEEEEEeCCCCCC
Q psy15151 253 IGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTAD--IKVIAATNRVDIL 330 (431)
Q Consensus 253 ~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~--v~vI~ttn~~~~l 330 (431)
+|+..+.++.+|..|..-.|+||||||+|.+++.|. +..|......-.+++..-||+.++.+ |+|+++||+|..+
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 999999999999999999999999999999998882 22244444455688988899887755 9999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----C---
Q psy15151 331 DPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR----G--- 403 (431)
Q Consensus 331 ~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~----~--- 403 (431)
|.+++| |+.+.++++.|+..+|.+|++..+++-++++++|+..++..|.||||+||..+|+.|+...+++ +
T Consensus 245 DeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 245 DEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred HHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999887764 1
Q ss_pred ---------------------CCCcCHHHHHHHHHHHHH
Q psy15151 404 ---------------------AAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 404 ---------------------~~~It~ed~~~Al~~~~~ 421 (431)
...++++||..|.+.+.+
T Consensus 323 ~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~ 361 (386)
T KOG0737|consen 323 LDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSA 361 (386)
T ss_pred hhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhh
Confidence 246889999999995544
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=8.3e-38 Score=319.90 Aligned_cols=243 Identities=28% Similarity=0.428 Sum_probs=211.8
Q ss_pred CCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~ 251 (431)
.+...|++|+|++..++.+...... .+..+.++|+++|+++|||||||||||++|+++|++++.+++.++++.+.++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG 298 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc
Confidence 3577899999999999998875442 2445577899999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q psy15151 252 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331 (431)
Q Consensus 252 ~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~ 331 (431)
++|+++..++.+|..++...||||||||||.++..+...+. +....+.+.+++..++. ...+++||+|||+++.+|
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d--~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGD--SGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCC--chHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 99999999999999999999999999999999875433222 22334556666666653 356799999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC--CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Q psy15151 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS--PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTH 409 (431)
Q Consensus 332 ~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~--~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ 409 (431)
++++|+||||..++++.|+.++|.+|++.++.+.... .+.++..++..+.||||+||.++|.+|...|..+++ .++.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~ 453 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTT 453 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCH
Confidence 9999999999999999999999999999999886543 478899999999999999999999999999988765 4899
Q ss_pred HHHHHHHHHHHHh
Q psy15151 410 EDFMDAIMEVQAK 422 (431)
Q Consensus 410 ed~~~Al~~~~~~ 422 (431)
+||..|+..+.|.
T Consensus 454 ~dl~~a~~~~~Pl 466 (489)
T CHL00195 454 DDILLALKQFIPL 466 (489)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999885
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=6.5e-38 Score=329.94 Aligned_cols=249 Identities=43% Similarity=0.711 Sum_probs=231.6
Q ss_pred CCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~ 251 (431)
.+..+|++|+|.++.++.+.+.+. ++.+++.|..+|..+++++||+||||||||++|+++|.+.+.+|+.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~-~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVS-FLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHH-HHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 346789999999999999988665 5889999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q psy15151 252 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331 (431)
Q Consensus 252 ~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~ 331 (431)
+.|.....++.+|..++...|+||||||||.++..|.......+.+.+..+.++|..++++....+++||++||+++.+|
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD 335 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD 335 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh
Confidence 99998889999999999999999999999999988765555567777889999999999988888999999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHH
Q psy15151 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411 (431)
Q Consensus 332 ~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed 411 (431)
++++||||||+.|.|++|+.++|.+|++.++++.....++++..++..+.||+++||.++|++|+..|.+++...|+.+|
T Consensus 336 ~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~d 415 (638)
T CHL00176 336 AALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKE 415 (638)
T ss_pred hhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHH
Confidence 99999999999999999999999999999999887778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy15151 412 FMDAIMEVQA 421 (431)
Q Consensus 412 ~~~Al~~~~~ 421 (431)
|..|+..+..
T Consensus 416 l~~Ai~rv~~ 425 (638)
T CHL00176 416 IDTAIDRVIA 425 (638)
T ss_pred HHHHHHHHHh
Confidence 9999998743
No 30
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.9e-35 Score=314.42 Aligned_cols=247 Identities=40% Similarity=0.689 Sum_probs=230.3
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
...|.++.|.+..+.++.+.+.. ...+..|..++...+++++|+||||||||++|+++|.+.+.+|+.++++++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 56799999999999999887765 67788888888888999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChh
Q psy15151 254 GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPA 333 (431)
Q Consensus 254 g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~ 333 (431)
|.....++.+|..++..+|+||||||+|.++..|.....+++.+...++.++|.+++++....+++||+|||+++.+|++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 99999999999999999999999999999998886655555667778899999999999888899999999999999999
Q ss_pred hhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q psy15151 334 LLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413 (431)
Q Consensus 334 l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~ 413 (431)
++||||||+.|.|+.|+.++|.+|++.++++.++..++++..++..+.||+|+||.++|++|+..|.+++...|+.+||.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~ 386 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFE 386 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy15151 414 DAIMEVQA 421 (431)
Q Consensus 414 ~Al~~~~~ 421 (431)
.|+..+..
T Consensus 387 ~a~~~v~~ 394 (644)
T PRK10733 387 KAKDKIMM 394 (644)
T ss_pred HHHHHHhc
Confidence 99988754
No 31
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=5.5e-35 Score=322.84 Aligned_cols=212 Identities=21% Similarity=0.273 Sum_probs=182.2
Q ss_pred HHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh-----------------------------
Q psy15151 202 EKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF----------------------------- 252 (431)
Q Consensus 202 ~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~----------------------------- 252 (431)
..+.++|+.+|+||||+||||||||+||||+|.+++.||+.++++++++++
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 345788999999999999999999999999999999999999999998654
Q ss_pred ------------hcchHH--HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC---CC
Q psy15151 253 ------------IGDGAK--LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS---ST 315 (431)
Q Consensus 253 ------------~g~~~~--~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~---~~ 315 (431)
++.+.+ .++.+|+.|+..+||||||||||.++.+. .. ..++.++++.+++.. +.
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-------s~--~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-------SN--YLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-------cc--eehHHHHHHHhccccccCCC
Confidence 122222 37889999999999999999999997652 11 124677888887653 45
Q ss_pred CCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHH--HhcCCCCC-CCCHHHHHHHcCCCCHHHHHHHH
Q psy15151 316 ADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIH--SRKMNVSP-DVNYEELSRSTDDFNGAQCKAVC 392 (431)
Q Consensus 316 ~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~--l~~~~~~~-~~~~~~la~~~~g~s~~di~~l~ 392 (431)
.+|+||||||+|+.+|||++||||||+.|.++.|+..+|.+++... .+++.+.. .++++.+|..|.||+||||.++|
T Consensus 1771 ~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1771 RNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1850 (2281)
T ss_pred CCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHH
Confidence 6899999999999999999999999999999999999999988754 44555553 36899999999999999999999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q psy15151 393 VEAGMIALRRGAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 393 ~~A~~~A~~~~~~~It~ed~~~Al~~~~~~ 422 (431)
++|+..|+++++..|+.++|..|+.++...
T Consensus 1851 NEAaliAirq~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1851 NEALSISITQKKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHHHhh
Confidence 999999999999999999999999987653
No 32
>KOG0730|consensus
Probab=100.00 E-value=8.3e-35 Score=294.81 Aligned_cols=242 Identities=43% Similarity=0.713 Sum_probs=224.1
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~ 252 (431)
+... .+++|...++..+.+.+..|+.++..|...|+++|+++|+|||||||||.+++++|++.++.++.++++++++++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 3455 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCC-CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q psy15151 253 IGDGAKLVRDAFALAKEKA-PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331 (431)
Q Consensus 253 ~g~~~~~~~~lf~~a~~~~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~ 331 (431)
.|+++..++..|+.+..+. |++|||||+|.++++|..... -..++..+++..+++.....+++||++||+|+.+|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998855433 23356667777777777789999999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHH
Q psy15151 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411 (431)
Q Consensus 332 ~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed 411 (431)
++++| ||||+.+.+..|+..+|.+|++.++++++..+++++..++..++||+|+|+.++|.+|.+.+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999998899999999999999999999999999999888 8899
Q ss_pred HHHHHHHHHHhhhc
Q psy15151 412 FMDAIMEVQAKKKA 425 (431)
Q Consensus 412 ~~~Al~~~~~~~~~ 425 (431)
|..|...+++...+
T Consensus 409 ~~~A~~~i~psa~R 422 (693)
T KOG0730|consen 409 FQEALMGIRPSALR 422 (693)
T ss_pred HHHHHhcCCchhhh
Confidence 99999988876544
No 33
>KOG0732|consensus
Probab=100.00 E-value=2.7e-34 Score=306.13 Aligned_cols=249 Identities=39% Similarity=0.649 Sum_probs=218.6
Q ss_pred CCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC-----CceEEeehh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK-----STFLKLAGP 246 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~-----~~~i~i~~~ 246 (431)
...+.|++|+|++..+..+++.|..|+.+|+.|.++++.||+++||+||||||||+.|+++|..+. ..|+.-+++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 346899999999999999999999999999999999999999999999999999999999999753 456777888
Q ss_pred hhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 247 QLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 247 ~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
+..++|+|+.++.++.+|+.|+...|+|||+||||-|++.|+..+..-+..+.. .+|-.|+|..+.+.|+||+|||+
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvS---TLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVS---TLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHH---HHHHhccCCCCCCceEEEcccCC
Confidence 999999999999999999999999999999999999999996665555554444 55555677778899999999999
Q ss_pred CCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-
Q psy15151 327 VDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA- 404 (431)
Q Consensus 327 ~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~- 404 (431)
++.++|+++||||||+.+.|+.|+.+.|.+|+.++.++..-. ...-+..++..+.||.|+||+++|.+|++.+.++.-
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~P 495 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFP 495 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccC
Confidence 999999999999999999999999999999999998876622 122366799999999999999999999999998842
Q ss_pred ---------------CCcCHHHHHHHHHHHHHhh
Q psy15151 405 ---------------AIVTHEDFMDAIMEVQAKK 423 (431)
Q Consensus 405 ---------------~~It~ed~~~Al~~~~~~~ 423 (431)
..|...||..|..+.-+..
T Consensus 496 q~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 496 QIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred eeecccccccccchhhhhhhHhhhhhhhccCCCC
Confidence 2478889999988877653
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3e-33 Score=303.24 Aligned_cols=249 Identities=45% Similarity=0.749 Sum_probs=223.9
Q ss_pred CCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~ 251 (431)
.+.++|++|+|++++++.+.+.+..|+.+|+.|..+|+.+++++|||||||||||++|+++|++++.+++.++++++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q psy15151 252 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331 (431)
Q Consensus 252 ~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~ 331 (431)
+.|.....++.+|+.+....|+||||||||.+++++.......+. +.+.+++..+++....+.++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~---~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEK---RVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHH---HHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 999999999999999999999999999999999887443322222 34455666666666678899999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--------
Q psy15151 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG-------- 403 (431)
Q Consensus 332 ~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~-------- 403 (431)
++++++|||+..+.++.|+.++|.+|++.+.+.+.+..++++..++..+.||+++|+..+|+.|++.+.++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999888888999999999999999999999999999887752
Q ss_pred -----------CCCcCHHHHHHHHHHHHHhh
Q psy15151 404 -----------AAIVTHEDFMDAIMEVQAKK 423 (431)
Q Consensus 404 -----------~~~It~ed~~~Al~~~~~~~ 423 (431)
...++.+||..|+..+.+..
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccc
Confidence 12578999999999888764
No 35
>KOG0741|consensus
Probab=100.00 E-value=5.6e-34 Score=280.85 Aligned_cols=250 Identities=36% Similarity=0.601 Sum_probs=213.8
Q ss_pred CCCCCccc--ccCchHHHHHHHH-HhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC-ceEEeehhh
Q psy15151 172 RPTEQYSD--IGGLDKQIQELIE-AVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS-TFLKLAGPQ 247 (431)
Q Consensus 172 ~~~~~~~~--i~G~~~~i~~l~~-~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~-~~i~i~~~~ 247 (431)
.|...|++ |+|++.....+.. +...-.--|+...++|+.+-+|+|||||||||||.+||.+..-+++ +--.+++++
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 35666665 6899999887654 3444456689999999999999999999999999999999998875 455689999
Q ss_pred hhHhhhcchHHHHHHHHHHHHh--------CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15151 248 LVQMFIGDGAKLVRDAFALAKE--------KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIK 319 (431)
Q Consensus 248 l~~~~~g~~~~~~~~lf~~a~~--------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~ 319 (431)
++++|+|+++.++|.+|..|.. ..--||+|||||++|..|++...+. .-.-..++|||..|||...-++++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~T-GVhD~VVNQLLsKmDGVeqLNNIL 371 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGST-GVHDTVVNQLLSKMDGVEQLNNIL 371 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCC-CccHHHHHHHHHhcccHHhhhcEE
Confidence 9999999999999999987754 1135999999999999996543321 112257789999999999999999
Q ss_pred EEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCC----CCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Q psy15151 320 VIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMN----VSPDVNYEELSRSTDDFNGAQCKAVCVEA 395 (431)
Q Consensus 320 vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~----~~~~~~~~~la~~~~g~s~~di~~l~~~A 395 (431)
||+-||+.+.+|.+|+|||||...+++..||+..|.+|++.|.+++. ++.++|+.+||..|..|||++|..+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987654 45899999999999999999999999999
Q ss_pred HHHHHHhC---------------CCCcCHHHHHHHHHHHHHh
Q psy15151 396 GMIALRRG---------------AAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 396 ~~~A~~~~---------------~~~It~ed~~~Al~~~~~~ 422 (431)
...|..+. .-.|+++||..|+++++|.
T Consensus 452 ~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA 493 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA 493 (744)
T ss_pred HHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc
Confidence 99998772 2368999999999999875
No 36
>KOG0740|consensus
Probab=100.00 E-value=5.9e-33 Score=274.24 Aligned_cols=250 Identities=36% Similarity=0.582 Sum_probs=220.2
Q ss_pred cccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh
Q psy15151 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL 248 (431)
Q Consensus 169 ~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l 248 (431)
....+.+.|+++.|++.+++.+.+.+.+|+.+++.|..+. .+++++||.||||+|||+|++++|.++++.|+.+.++.+
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 4556689999999999999999999999999999998877 566899999999999999999999999999999999999
Q ss_pred hHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCC--CCCeEEEEEeCC
Q psy15151 249 VQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS--TADIKVIAATNR 326 (431)
Q Consensus 249 ~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~--~~~v~vI~ttn~ 326 (431)
.++|+|++++.++.+|.-|+...|+|+||||+|.++.+|.+.....++ +...++|-..++... ..+|+||+|||+
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~sr---r~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSR---RLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccch---hhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 999999999999999999999999999999999999999665554444 566677777665443 458999999999
Q ss_pred CCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--
Q psy15151 327 VDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG-- 403 (431)
Q Consensus 327 ~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~-- 403 (431)
|+.+|.+++| ||...+++|.|+.+.|..+|...+.+.+.. .+.++..|++.++||++.||.++|.+|++--++..
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 999999999999999999999999877333 45789999999999999999999999997655442
Q ss_pred -----------CCCcCHHHHHHHHHHHHHhhh
Q psy15151 404 -----------AAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 404 -----------~~~It~ed~~~Al~~~~~~~~ 424 (431)
...++..||..|++.+++.-.
T Consensus 378 ~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s 409 (428)
T KOG0740|consen 378 TTDLEFIDADKIRPITYPDFKNAFKNIKPSVS 409 (428)
T ss_pred chhhhhcchhccCCCCcchHHHHHHhhccccC
Confidence 235788899999999887643
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.98 E-value=4e-31 Score=255.30 Aligned_cols=217 Identities=19% Similarity=0.225 Sum_probs=164.5
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
..+|+++.|--.......+.+...+.. +.+..+|+.+|.+++||||||||||++|+++|++++.+++.++++++.++|+
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~k-n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAK-NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHh-hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 566777744333333333333222111 1223367889999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHh-----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC------------CCCC
Q psy15151 254 GDGAKLVRDAFALAKE-----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF------------SSTA 316 (431)
Q Consensus 254 g~~~~~~~~lf~~a~~-----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~------------~~~~ 316 (431)
|++++.++++|..|+. .+||||||||||.+++++.+.+ .....+....+||+.+|+. ....
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~--~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ--YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC--cchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 9999999999999875 5699999999999999885322 2222233335677666542 3457
Q ss_pred CeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCC----CCHHHHHHHH
Q psy15151 317 DIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDD----FNGAQCKAVC 392 (431)
Q Consensus 317 ~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g----~s~~di~~l~ 392 (431)
+|+||+|||+|+.|||+|+|+||||..+ ..|+.++|.+|++.++++..++ ..++..|+..+.| |.|+--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 8999999999999999999999999865 5899999999999999988776 5778888888766 4555444444
Q ss_pred HHHH
Q psy15151 393 VEAG 396 (431)
Q Consensus 393 ~~A~ 396 (431)
.++.
T Consensus 345 d~~v 348 (413)
T PLN00020 345 DDEV 348 (413)
T ss_pred HHHH
Confidence 4333
No 38
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.2e-25 Score=233.24 Aligned_cols=229 Identities=18% Similarity=0.293 Sum_probs=183.5
Q ss_pred EEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhcc---ccChHHHHhcCCCCCCCceeeCC
Q psy15151 144 GVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLP---MTHKEKFVNLGIQPPKGVLLYGP 220 (431)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~---~~~~~~~~~~g~~~~~~vLl~Gp 220 (431)
+|++||++++..+......++..|+ ......|+||++++..+.++|.+. +..|. .|..++||.||
T Consensus 462 vv~~~TgIPv~~l~~~e~~kll~le-----~~L~~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GP 529 (786)
T COG0542 462 VVARWTGIPVAKLLEDEKEKLLNLE-----RRLKKRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGP 529 (786)
T ss_pred HHHHHHCCChhhhchhhHHHHHHHH-----HHHhcceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCC
Confidence 7899999999999999999999988 788899999999999999999864 22232 25568999999
Q ss_pred CCCchHHHHHHHHHHcC---CceEEeehhhhhH-----hhhcchHHHH-----HHHHHHHHhCCCeEEEEccccccccCC
Q psy15151 221 PGTGKTLLARACAAQTK---STFLKLAGPQLVQ-----MFIGDGAKLV-----RDAFALAKEKAPAIIFIDELDAIGTKR 287 (431)
Q Consensus 221 pGtGKT~lakala~~~~---~~~i~i~~~~l~~-----~~~g~~~~~~-----~~lf~~a~~~~p~vl~iDEid~l~~~r 287 (431)
+|+|||.||++||..+. ..++++|||+|++ +++|.+++++ +.+.+.++++++|||+||||++.
T Consensus 530 TGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA---- 605 (786)
T COG0542 530 TGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA---- 605 (786)
T ss_pred CcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc----
Confidence 99999999999999876 7899999999965 4788888887 56889999999999999999996
Q ss_pred CCCCCcCcHHHHHHHHHHHHhhcCCCCC------CCeEEEEEeCCC----------------------------CCCChh
Q psy15151 288 FDSEKAGDREVQRTMLELLNQLDGFSST------ADIKVIAATNRV----------------------------DILDPA 333 (431)
Q Consensus 288 ~~~~~~~~~~~~~~l~~lL~~~~~~~~~------~~v~vI~ttn~~----------------------------~~l~~~ 333 (431)
|+++.++|+|+|+...-.++. .+.+||||||.- ..+.|+
T Consensus 606 -------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PE 678 (786)
T COG0542 606 -------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPE 678 (786)
T ss_pred -------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHH
Confidence 999999999999985444333 478899999952 127899
Q ss_pred hhcCCCcceEEEcCCCCHHHHHHHHHHHHhcC-------CCC---CCCCHHHHHHHcC--CCCHHHHHHHHHHHHH
Q psy15151 334 LLRSGRLDRKIEFPHPNEEARARIMQIHSRKM-------NVS---PDVNYEELSRSTD--DFNGAQCKAVCVEAGM 397 (431)
Q Consensus 334 l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~---~~~~~~~la~~~~--g~s~~di~~l~~~A~~ 397 (431)
|++ |+|.+|.|.+++.+...+|+...+..+ ++. ++...+.|+.... .|-++-++.+++.-..
T Consensus 679 FLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~ 752 (786)
T COG0542 679 FLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIE 752 (786)
T ss_pred HHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHH
Confidence 999 999999999999999999998776532 222 1111445555432 3455667766665443
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.90 E-value=3e-22 Score=193.53 Aligned_cols=215 Identities=23% Similarity=0.274 Sum_probs=159.8
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCC---CCceeeCCCCCchHHHHHHHHHHc-------CCceEEee
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPP---KGVLLYGPPGTGKTLLARACAAQT-------KSTFLKLA 244 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~---~~vLl~GppGtGKT~lakala~~~-------~~~~i~i~ 244 (431)
..+.+++|++++++++.+.+.. +..+..+.+.|+.++ .+++|+||||||||++|+++|..+ ..+++.++
T Consensus 20 ~l~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~ 98 (287)
T CHL00181 20 ILDEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT 98 (287)
T ss_pred HHHHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec
Confidence 4456899999999999987765 445677777887654 358999999999999999999864 24689999
Q ss_pred hhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q psy15151 245 GPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT 324 (431)
Q Consensus 245 ~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt 324 (431)
++++...++|+++.....+|+.+.. +||||||+|.++..+. ......+.+..|+++++. ...+++||+++
T Consensus 99 ~~~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~-----~~~~~~vI~ag 168 (287)
T CHL00181 99 RDDLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMEN-----QRDDLVVIFAG 168 (287)
T ss_pred HHHHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC--ccchHHHHHHHHHHHHhc-----CCCCEEEEEeC
Confidence 9999999999988878888887643 5999999999865432 122345666666666653 23567788887
Q ss_pred CCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHH------cCCC-CHHHHHHH
Q psy15151 325 NRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDV-NYEELSRS------TDDF-NGAQCKAV 391 (431)
Q Consensus 325 n~~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~------~~g~-s~~di~~l 391 (431)
+... .++|++.+ ||+.+|.|++|+.+++.+|+..++++....-+. ....+... ...| ++++++++
T Consensus 169 ~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ 246 (287)
T CHL00181 169 YKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNA 246 (287)
T ss_pred CcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 6422 24699999 999999999999999999999999865533111 13333332 1233 48999999
Q ss_pred HHHHHHHHHHh
Q psy15151 392 CVEAGMIALRR 402 (431)
Q Consensus 392 ~~~A~~~A~~~ 402 (431)
+..|......+
T Consensus 247 ve~~~~~~~~r 257 (287)
T CHL00181 247 LDRARMRQANR 257 (287)
T ss_pred HHHHHHHHHHH
Confidence 99887765544
No 40
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.89 E-value=4.1e-22 Score=192.64 Aligned_cols=212 Identities=21% Similarity=0.265 Sum_probs=160.8
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhcCCCC---CCCceeeCCCCCchHHHHHHHHHHc-------CCceEEeehhh
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQP---PKGVLLYGPPGTGKTLLARACAAQT-------KSTFLKLAGPQ 247 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~---~~~vLl~GppGtGKT~lakala~~~-------~~~~i~i~~~~ 247 (431)
.+++|++++++++.+.+.. +..++.+.+.|+.+ +.+++|+||||||||++|+++|..+ ..+++.+++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 4689999999999987776 66777888888764 3489999999999999999998864 23799999999
Q ss_pred hhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 248 LVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 248 l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
++..++|++...++.+|+.+.. +||||||++.+...+. ......+.+..|+++++. ...+++||++++..
T Consensus 101 l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~-----~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMEN-----QRDDLVVILAGYKD 170 (284)
T ss_pred HhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhc-----CCCCEEEEEeCCcH
Confidence 9999999988888888887754 5999999999864431 112344566666666653 34678888887643
Q ss_pred --CC---CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHH-------cCCCCHHHHHHHHHH
Q psy15151 328 --DI---LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRS-------TDDFNGAQCKAVCVE 394 (431)
Q Consensus 328 --~~---l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~-------~~g~s~~di~~l~~~ 394 (431)
+. ++|++.+ ||+..|.||+++.+++..|+..++++....-+ .....+... ..-.+++++++++..
T Consensus 171 ~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 171 RMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 22 5899999 99999999999999999999999987553311 113333333 223468999999998
Q ss_pred HHHHHHHh
Q psy15151 395 AGMIALRR 402 (431)
Q Consensus 395 A~~~A~~~ 402 (431)
|......+
T Consensus 249 ~~~~~~~r 256 (284)
T TIGR02880 249 ARLRQANR 256 (284)
T ss_pred HHHHHHHH
Confidence 88766544
No 41
>KOG0743|consensus
Probab=99.89 E-value=2.9e-22 Score=197.15 Aligned_cols=208 Identities=24% Similarity=0.298 Sum_probs=164.0
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
..+|+.++-..+.++.|.+.+..++...+.|.+.|.+..+|.|||||||||||+++.|+|+.++..++-+..++..
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~---- 272 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK---- 272 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc----
Confidence 4789999999999999999999999999999999999999999999999999999999999999998888776542
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCC--cCcH--HHHHHHHHHHHhhcCCCCCC--CeEEEEEeCCC
Q psy15151 254 GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEK--AGDR--EVQRTMLELLNQLDGFSSTA--DIKVIAATNRV 327 (431)
Q Consensus 254 g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~--~~~~--~~~~~l~~lL~~~~~~~~~~--~v~vI~ttn~~ 327 (431)
.... ++.++... ...+||+|.+||+-+.-+..... .... ...-+|..||+.+||..+.. ..+||+|||.+
T Consensus 273 -~n~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 273 -LDSD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred -CcHH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 2222 56665444 34579999999997654322211 1111 12356888999999998865 78899999999
Q ss_pred CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCC--CCHHHHHHH
Q psy15151 328 DILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDD--FNGAQCKAV 391 (431)
Q Consensus 328 ~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g--~s~~di~~l 391 (431)
+.|||||+||||+|.+|++..-+..+.+.++..++..-. + ..-+.+|.....+ .++|++...
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~-h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-D-HRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-C-cchhHHHHHHhhcCccCHHHHHHH
Confidence 999999999999999999999999999999999885322 1 2224555554443 488887644
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=3e-21 Score=184.88 Aligned_cols=212 Identities=23% Similarity=0.269 Sum_probs=151.5
Q ss_pred cccccCchHHHHHHHHHhhccccChHHHHhcCCCC---CCCceeeCCCCCchHHHHHHHHHHc-------CCceEEeehh
Q psy15151 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQP---PKGVLLYGPPGTGKTLLARACAAQT-------KSTFLKLAGP 246 (431)
Q Consensus 177 ~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~---~~~vLl~GppGtGKT~lakala~~~-------~~~~i~i~~~ 246 (431)
+++++|++++++.+.+.+.++... ......|+.+ +.+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 568999999999999877665433 3334456543 3478999999999999999999863 3478899999
Q ss_pred hhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 247 QLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 247 ~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
++...++|+....++.+|+.+. ++||||||+|.|.... ......+. +..++..++. ...++++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~---~~~~~~~~---i~~Ll~~~e~--~~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG---EKDFGKEA---IDTLVKGMED--NRNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC---ccchHHHH---HHHHHHHHhc--cCCCEEEEecCCc
Confidence 9999999999988889988775 3599999999995321 11112233 3444554443 2455666766543
Q ss_pred CC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHH---------cCCCCHHHHHHH
Q psy15151 327 VD-----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRS---------TDDFNGAQCKAV 391 (431)
Q Consensus 327 ~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~---------~~g~s~~di~~l 391 (431)
.+ .++|++.+ ||+..|.||+++.+++.+|++.++......-+ ..+..++.. ....+++.+.++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 32 36789999 99999999999999999999999886544311 113344321 123478889999
Q ss_pred HHHHHHHHHHh
Q psy15151 392 CVEAGMIALRR 402 (431)
Q Consensus 392 ~~~A~~~A~~~ 402 (431)
+..|......+
T Consensus 231 ~e~a~~~~~~r 241 (261)
T TIGR02881 231 IEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHH
Confidence 98888766554
No 43
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.88 E-value=7.7e-22 Score=216.02 Aligned_cols=240 Identities=17% Similarity=0.244 Sum_probs=173.5
Q ss_pred cccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccc---cChHHHHhc
Q psy15151 131 LVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPM---THKEKFVNL 207 (431)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~---~~~~~~~~~ 207 (431)
.|+.+.|.. +|+.||++|+..+......++..++ ......|+|++.+++.+...+.... .+|.
T Consensus 530 ~v~~~~i~~----vv~~~tgip~~~~~~~~~~~l~~l~-----~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~----- 595 (857)
T PRK10865 530 KVTDAEIAE----VLARWTGIPVSRMLESEREKLLRME-----QELHHRVIGQNEAVEAVSNAIRRSRAGLSDPN----- 595 (857)
T ss_pred ccCHHHHHH----HHHHHHCCCchhhhhhHHHHHHHHH-----HHhCCeEeCCHHHHHHHHHHHHHHHhcccCCC-----
Confidence 344444444 7899999999999998888888887 6788999999999999999987532 2221
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhH-----hhhcchHHHH-----HHHHHHHHhCCCeE
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQ-----MFIGDGAKLV-----RDAFALAKEKAPAI 274 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~-----~~~g~~~~~~-----~~lf~~a~~~~p~v 274 (431)
.|...+||+||||||||++|+++|..+ +.++++++|+++.. .++|.+++++ +.+.+..+..+++|
T Consensus 596 --~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~v 673 (857)
T PRK10865 596 --RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSV 673 (857)
T ss_pred --CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCe
Confidence 133578999999999999999999875 45799999998754 3445443322 23455566677799
Q ss_pred EEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC------CCCCeEEEEEeCCC---------------------
Q psy15151 275 IFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS------STADIKVIAATNRV--------------------- 327 (431)
Q Consensus 275 l~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~------~~~~v~vI~ttn~~--------------------- 327 (431)
|||||++.+ ++++++.|+++++...-.+ ...+.+||+|||..
T Consensus 674 LllDEieka-----------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~ 742 (857)
T PRK10865 674 ILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVL 742 (857)
T ss_pred EEEeehhhC-----------CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHH
Confidence 999999997 8899999999998642111 12466799999972
Q ss_pred ----CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcC-------CCCCCCC---HHHHHHHc--CCCCHHHHHHH
Q psy15151 328 ----DILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKM-------NVSPDVN---YEELSRST--DDFNGAQCKAV 391 (431)
Q Consensus 328 ----~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~~~~~---~~~la~~~--~g~s~~di~~l 391 (431)
..+.|+|++ |+|.++.|.+++.+...+|+..++..+ ++.-.++ ++.|+... ..+..+.|+.+
T Consensus 743 ~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~ 820 (857)
T PRK10865 743 GVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRA 820 (857)
T ss_pred HHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHH
Confidence 236689998 999999999999999999988776542 2222233 33444422 12345777777
Q ss_pred HHHHHHHH
Q psy15151 392 CVEAGMIA 399 (431)
Q Consensus 392 ~~~A~~~A 399 (431)
++.-....
T Consensus 821 I~~~i~~~ 828 (857)
T PRK10865 821 IQQQIENP 828 (857)
T ss_pred HHHHHHHH
Confidence 77655443
No 44
>KOG0742|consensus
Probab=99.87 E-value=3.2e-21 Score=185.91 Aligned_cols=234 Identities=23% Similarity=0.376 Sum_probs=166.7
Q ss_pred CCCCcccccCchHHHHHHHHHhh---ccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVV---LPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~---~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
+...+++|+-......+|.+... ....|. .|-+++|||||||||||++|+-||..+|..+-.+.+.++.
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~--------apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA 421 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKKHQ--------APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA 421 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccccc--------chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc
Confidence 34557777765555555544332 223333 2447899999999999999999999999988777765542
Q ss_pred HhhhcchHHHHHHHHHHHHhCCC-eEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 250 QMFIGDGAKLVRDAFALAKEKAP-AIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 250 ~~~~g~~~~~~~~lf~~a~~~~p-~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
- +-.+....+..+|+.+..... -+|||||.|.++..|... ..+......|+.+|=. .| +...+++++.+||+|.
T Consensus 422 P-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt--ymSEaqRsaLNAlLfR-TG-dqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 422 P-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFR-TG-DQSRDIVLVLATNRPG 496 (630)
T ss_pred c-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh--hhcHHHHHHHHHHHHH-hc-ccccceEEEeccCCcc
Confidence 2 212345668899999987654 478999999988777322 1122223344444422 11 2456789999999999
Q ss_pred CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-----------------------CC----HHHHHHHcC
Q psy15151 329 ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-----------------------VN----YEELSRSTD 381 (431)
Q Consensus 329 ~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-----------------------~~----~~~la~~~~ 381 (431)
.+|.++-. |||.+|+||.|..++|..++..|+.++-..++ .+ ..+.+..|.
T Consensus 497 dlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTe 574 (630)
T KOG0742|consen 497 DLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTE 574 (630)
T ss_pred chhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhcc
Confidence 99999999 99999999999999999999999876442210 01 456788999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q psy15151 382 DFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 382 g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~ 421 (431)
||||++|..++......++.+....++..-|++.+..-..
T Consensus 575 GfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~ 614 (630)
T KOG0742|consen 575 GFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQ 614 (630)
T ss_pred CCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 9999999999886666666666677777777776665443
No 45
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=1.6e-21 Score=166.37 Aligned_cols=130 Identities=47% Similarity=0.703 Sum_probs=110.3
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCC-CeEEEEccccccccCCCCCCCc
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA-PAIIFIDELDAIGTKRFDSEKA 293 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~-p~vl~iDEid~l~~~r~~~~~~ 293 (431)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.+.....+..+|..+.... |+||||||+|.++......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~--- 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPS--- 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTS---
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccc---
Confidence 689999999999999999999999999999999998889999999999999998887 9999999999998876222
Q ss_pred CcHHHHHHHHHHHHhhcCCCCC-CCeEEEEEeCCCCCCChhhhcCCCcceEEEcCC
Q psy15151 294 GDREVQRTMLELLNQLDGFSST-ADIKVIAATNRVDILDPALLRSGRLDRKIEFPH 348 (431)
Q Consensus 294 ~~~~~~~~l~~lL~~~~~~~~~-~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~ 348 (431)
.+......+..++..++..... .+++||+|||.++.+++.+++ +||+..|++|.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 2333445555666666655444 679999999999999999997 79999999874
No 46
>KOG0744|consensus
Probab=99.87 E-value=8.4e-22 Score=185.13 Aligned_cols=246 Identities=24% Similarity=0.292 Sum_probs=184.6
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcC-CCCCCCceeeCCCCCchHHHHHHHHHHcC---------CceEEee
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLG-IQPPKGVLLYGPPGTGKTLLARACAAQTK---------STFLKLA 244 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g-~~~~~~vLl~GppGtGKT~lakala~~~~---------~~~i~i~ 244 (431)
-.|+.++--...++++..++...+...+.-.+-. +...+-+|++||||||||+|||++|+.+. ..++.++
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 3577888778888888888775544332211111 22345689999999999999999999753 4678999
Q ss_pred hhhhhHhhhcchHHHHHHHHHHHHh-----CCCeEEEEccccccccCCCC-CCCcCcHHHHHHHHHHHHhhcCCCCCCCe
Q psy15151 245 GPQLVQMFIGDGAKLVRDAFALAKE-----KAPAIIFIDELDAIGTKRFD-SEKAGDREVQRTMLELLNQLDGFSSTADI 318 (431)
Q Consensus 245 ~~~l~~~~~g~~~~~~~~lf~~a~~-----~~p~vl~iDEid~l~~~r~~-~~~~~~~~~~~~l~~lL~~~~~~~~~~~v 318 (431)
+..++++|++++.+.+..+|..... +.-..++|||++.|+..|.. +....+.+.-+.++.+|.++|.+....+|
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv 298 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV 298 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE
Confidence 9999999999999999999977654 22345789999999988733 34445667778999999999999999999
Q ss_pred EEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-----C-------------CCCHHHHHHH-
Q psy15151 319 KVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-----P-------------DVNYEELSRS- 379 (431)
Q Consensus 319 ~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-----~-------------~~~~~~la~~- 379 (431)
++.+|+|..+.+|.+|.. |-|-+.++.+|+...+++|++.++.++--. . +.....+...
T Consensus 299 liL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~ 376 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELS 376 (423)
T ss_pred EEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHh
Confidence 999999999999999999 999999999999999999999876542111 0 1112223332
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhh
Q psy15151 380 TDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 380 ~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~ 424 (431)
+.|.+|+-|+.+=..|- |..-....|+.++|..|+-....+..
T Consensus 377 ~~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~ea~~k~~ 419 (423)
T KOG0744|consen 377 TVGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALLEAAKKLL 419 (423)
T ss_pred hcCCccchHhhhhHHHH--HhccCCCccChHHHHHHHHHHHHHHh
Confidence 58899998887644332 22223468999999999888766544
No 47
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.86 E-value=1.9e-21 Score=213.68 Aligned_cols=234 Identities=18% Similarity=0.264 Sum_probs=175.7
Q ss_pred EEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhcccc---ChHHHHhcCCCCCCCceeeCC
Q psy15151 144 GVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMT---HKEKFVNLGIQPPKGVLLYGP 220 (431)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~---~~~~~~~~g~~~~~~vLl~Gp 220 (431)
+++.+|++++..+......++..++ ......|+|++.+++.+...+..... .|. .|...+||+||
T Consensus 536 v~~~~tgip~~~~~~~e~~~l~~l~-----~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp 603 (852)
T TIGR03346 536 VVSRWTGIPVSKMLEGEREKLLHME-----EVLHERVVGQDEAVEAVSDAIRRSRAGLSDPN-------RPIGSFLFLGP 603 (852)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHH-----HHhhcccCCChHHHHHHHHHHHHHhccCCCCC-------CCCeEEEEEcC
Confidence 7889999999999888888888887 55778899999999999999886421 221 14467999999
Q ss_pred CCCchHHHHHHHHHHc---CCceEEeehhhhhH-----hhhcchHHHH-----HHHHHHHHhCCCeEEEEccccccccCC
Q psy15151 221 PGTGKTLLARACAAQT---KSTFLKLAGPQLVQ-----MFIGDGAKLV-----RDAFALAKEKAPAIIFIDELDAIGTKR 287 (431)
Q Consensus 221 pGtGKT~lakala~~~---~~~~i~i~~~~l~~-----~~~g~~~~~~-----~~lf~~a~~~~p~vl~iDEid~l~~~r 287 (431)
||||||++|+++|..+ +.++++++|+++.. .++|.+++++ +.+.+.++..+.+|||||||+.+
T Consensus 604 ~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka---- 679 (852)
T TIGR03346 604 TGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA---- 679 (852)
T ss_pred CCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC----
Confidence 9999999999999975 46899999988743 3445443332 34666777788899999999997
Q ss_pred CCCCCcCcHHHHHHHHHHHHhhcCCCC------CCCeEEEEEeCCCC-------------------------CCChhhhc
Q psy15151 288 FDSEKAGDREVQRTMLELLNQLDGFSS------TADIKVIAATNRVD-------------------------ILDPALLR 336 (431)
Q Consensus 288 ~~~~~~~~~~~~~~l~~lL~~~~~~~~------~~~v~vI~ttn~~~-------------------------~l~~~l~r 336 (431)
++++++.|+++|++..-.+. ..+++||+|||... .+.|+|+.
T Consensus 680 -------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~ 752 (852)
T TIGR03346 680 -------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN 752 (852)
T ss_pred -------CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc
Confidence 89999999999987431111 25688999999721 25678888
Q ss_pred CCCcceEEEcCCCCHHHHHHHHHHHHhc-------CCCCCCCC---HHHHHHHcC--CCCHHHHHHHHHHHHHHHHHh
Q psy15151 337 SGRLDRKIEFPHPNEEARARIMQIHSRK-------MNVSPDVN---YEELSRSTD--DFNGAQCKAVCVEAGMIALRR 402 (431)
Q Consensus 337 ~gR~~~~i~~~~p~~~~r~~Il~~~l~~-------~~~~~~~~---~~~la~~~~--g~s~~di~~l~~~A~~~A~~~ 402 (431)
|+|.++.|.+++.+...+|+...+.. .++...++ ++.|+.... .+..+.++++++......+.+
T Consensus 753 --Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 753 --RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred --CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999998866542 22222222 455666533 567788998888777655443
No 48
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.86 E-value=1.7e-20 Score=204.43 Aligned_cols=226 Identities=22% Similarity=0.351 Sum_probs=154.6
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh----
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV---- 249 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~---- 249 (431)
...-+++.|++++++.+.+++....... -..+.+++|+||||||||++|+++|+.++.+|+++++..+.
T Consensus 316 ~~l~~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~ 388 (775)
T TIGR00763 316 EILDEDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAE 388 (775)
T ss_pred HHhhhhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHH
Confidence 3445679999999999998776443222 11334799999999999999999999999999999765432
Q ss_pred -----HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhh------cCC----CC
Q psy15151 250 -----QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL------DGF----SS 314 (431)
Q Consensus 250 -----~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~------~~~----~~ 314 (431)
..|+|...+.+.+.|..+....| ||||||||.+.+.. +.+..+.|+++|+.. +.. ..
T Consensus 389 i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~-------~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 389 IRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSF-------RGDPASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred HcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCcc-------CCCHHHHHHHhcCHHhcCccccccCCceec
Confidence 24677777788888887766555 89999999997532 112346677777631 111 11
Q ss_pred CCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHH-----hcCCCCC---CCC---HHHHHH-HcCC
Q psy15151 315 TADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHS-----RKMNVSP---DVN---YEELSR-STDD 382 (431)
Q Consensus 315 ~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l-----~~~~~~~---~~~---~~~la~-~~~g 382 (431)
..++++|+|||..+.+++++++ ||. +|.|++|+.+++.+|++.++ +...+.. .++ +..|+. .+..
T Consensus 461 ~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e 537 (775)
T TIGR00763 461 LSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTRE 537 (775)
T ss_pred cCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChh
Confidence 2578999999999999999999 994 79999999999999998775 2222221 122 444444 2333
Q ss_pred CCHHHHH----HHHHHHHHHHHHhCC--------CCcCHHHHHHHHH
Q psy15151 383 FNGAQCK----AVCVEAGMIALRRGA--------AIVTHEDFMDAIM 417 (431)
Q Consensus 383 ~s~~di~----~l~~~A~~~A~~~~~--------~~It~ed~~~Al~ 417 (431)
+..++++ .+|+.++......+. ..|+.+++.+.+.
T Consensus 538 ~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 538 AGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 3444544 556555443332221 4678887776654
No 49
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.85 E-value=6.5e-21 Score=208.19 Aligned_cols=231 Identities=15% Similarity=0.219 Sum_probs=173.7
Q ss_pred EEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhcc---ccChHHHHhcCCCCCCCceeeCC
Q psy15151 144 GVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLP---MTHKEKFVNLGIQPPKGVLLYGP 220 (431)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~---~~~~~~~~~~g~~~~~~vLl~Gp 220 (431)
+|++||++|+..+......++..++ ...-..|+|++.++..+.+++... +..|. .|...+||+||
T Consensus 537 vv~~~tgip~~~~~~~e~~~l~~l~-----~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~-------~p~~~~lf~Gp 604 (852)
T TIGR03345 537 VVADWTGIPVGRMVRDEIEAVLSLP-----DRLAERVIGQDHALEAIAERIRTARAGLEDPR-------KPLGVFLLVGP 604 (852)
T ss_pred HHHHHHCCCchhhchhHHHHHHHHH-----HHhcCeEcChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEEECC
Confidence 7899999999999988888888887 677889999999999999998764 22221 13335899999
Q ss_pred CCCchHHHHHHHHHHc---CCceEEeehhhhhHh-----hhcchHHHH-----HHHHHHHHhCCCeEEEEccccccccCC
Q psy15151 221 PGTGKTLLARACAAQT---KSTFLKLAGPQLVQM-----FIGDGAKLV-----RDAFALAKEKAPAIIFIDELDAIGTKR 287 (431)
Q Consensus 221 pGtGKT~lakala~~~---~~~~i~i~~~~l~~~-----~~g~~~~~~-----~~lf~~a~~~~p~vl~iDEid~l~~~r 287 (431)
||||||++|+++|..+ ...++.++|+++... ++|.+++++ +.+.+.++.++++||+|||||.+
T Consensus 605 ~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka---- 680 (852)
T TIGR03345 605 SGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA---- 680 (852)
T ss_pred CCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc----
Confidence 9999999999999987 458999999988543 455554443 23567778889999999999987
Q ss_pred CCCCCcCcHHHHHHHHHHHHhhcCCCC------CCCeEEEEEeCCC-----------------------------CCCCh
Q psy15151 288 FDSEKAGDREVQRTMLELLNQLDGFSS------TADIKVIAATNRV-----------------------------DILDP 332 (431)
Q Consensus 288 ~~~~~~~~~~~~~~l~~lL~~~~~~~~------~~~v~vI~ttn~~-----------------------------~~l~~ 332 (431)
++++++.|+++++...-.+. ..+.+||+|||.. ..+.|
T Consensus 681 -------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~P 753 (852)
T TIGR03345 681 -------HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKP 753 (852)
T ss_pred -------CHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccH
Confidence 88999999999987432221 2578899999951 12678
Q ss_pred hhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcC--------CCC---CCCCHHHHHHHcCC--CCHHHHHHHHHHHHHHH
Q psy15151 333 ALLRSGRLDRKIEFPHPNEEARARIMQIHSRKM--------NVS---PDVNYEELSRSTDD--FNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 333 ~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~--------~~~---~~~~~~~la~~~~g--~s~~di~~l~~~A~~~A 399 (431)
+|++ |++ +|.|.+++.++..+|+...+..+ ++. ++...+.|+....+ +-++.+..+++.-...+
T Consensus 754 Efln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~ 830 (852)
T TIGR03345 754 AFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPE 830 (852)
T ss_pred HHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Confidence 8898 997 89999999999999998776542 222 12225566666543 45677887777654443
Q ss_pred H
Q psy15151 400 L 400 (431)
Q Consensus 400 ~ 400 (431)
+
T Consensus 831 l 831 (852)
T TIGR03345 831 L 831 (852)
T ss_pred H
Confidence 3
No 50
>KOG0736|consensus
Probab=99.85 E-value=5.3e-20 Score=189.40 Aligned_cols=242 Identities=26% Similarity=0.375 Sum_probs=190.7
Q ss_pred cccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcch
Q psy15151 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDG 256 (431)
Q Consensus 177 ~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~ 256 (431)
+-...+++..+..+.. +..|...|. ..++.....+||+|+||||||++++++|++++.+++.++|.++.....+..
T Consensus 400 ~~~~~~~~~~~~~l~~-vl~p~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~ 475 (953)
T KOG0736|consen 400 SLSPPGLEAKVLELVA-VLSPQKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHT 475 (953)
T ss_pred cCCCccchHHHHHHHH-HhCcccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchh
Confidence 3344555655554443 333444442 122233457999999999999999999999999999999999999988899
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhc
Q psy15151 257 AKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLR 336 (431)
Q Consensus 257 ~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r 336 (431)
+..+...|..|+..+|+||||-++|.++.++.+ +.+......+..++..=+...+..+++||++++..+.+++.+++
T Consensus 476 etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~ 552 (953)
T KOG0736|consen 476 ETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS 552 (953)
T ss_pred HHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH
Confidence 999999999999999999999999999855433 33444445555555421222356789999999999999999999
Q ss_pred CCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---C----------
Q psy15151 337 SGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR---G---------- 403 (431)
Q Consensus 337 ~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~---~---------- 403 (431)
-|-..|.++.|+.++|.+|++.++....+..++....++..+.||+.+++.+++..+-..+..+ .
T Consensus 553 --~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~ 630 (953)
T KOG0736|consen 553 --LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEED 630 (953)
T ss_pred --hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcc
Confidence 8888999999999999999999999999999999999999999999999999887663332222 1
Q ss_pred -------CCCcCHHHHHHHHHHHHHhhhccc
Q psy15151 404 -------AAIVTHEDFMDAIMEVQAKKKANL 427 (431)
Q Consensus 404 -------~~~It~ed~~~Al~~~~~~~~~~~ 427 (431)
...++++||..|+.+++...+..+
T Consensus 631 ~~~~~~~~~~l~~edf~kals~~~~~fs~ai 661 (953)
T KOG0736|consen 631 EGELCAAGFLLTEEDFDKALSRLQKEFSDAI 661 (953)
T ss_pred ccccccccceecHHHHHHHHHHHHHhhhhhc
Confidence 257899999999999998766543
No 51
>KOG0735|consensus
Probab=99.85 E-value=4.2e-20 Score=188.57 Aligned_cols=217 Identities=23% Similarity=0.278 Sum_probs=174.8
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC----CceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK----STFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~----~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
.+.++||+||+|+|||.|+++++.+.. +++..++|+.+...-+....+.+..+|..+.+++|+||++|++|.|++.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 457899999999999999999999854 4677889998877666677788899999999999999999999999883
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhh-cCC-CCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhc
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQL-DGF-SSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK 364 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~-~~~-~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~ 364 (431)
. +.+.+.+......+..+++++ ..+ ..+..+.+|++.+....++|.+.+|++|+.++.+|+|+..+|.+|++..+.+
T Consensus 510 s-~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 510 S-SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred C-cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 2 333334444555566666442 222 2344568999999999999999999999999999999999999999998877
Q ss_pred CCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHHHHHhhhcccC
Q psy15151 365 MNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR----GAAIVTHEDFMDAIMEVQAKKKANLN 428 (431)
Q Consensus 365 ~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~----~~~~It~ed~~~Al~~~~~~~~~~~~ 428 (431)
.... ..-|++.++..|.||...|+..++.+|...|... +...+|.++|.++++.+.+...+.+.
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik 657 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIK 657 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhcc
Confidence 6533 2234556999999999999999999999999843 23479999999999999887665543
No 52
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.85 E-value=4.7e-20 Score=168.08 Aligned_cols=193 Identities=23% Similarity=0.331 Sum_probs=130.3
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
+.++++++||++.+..+.-.+....... .+..++|||||||+|||+||+.+|++++.+|...+++.+-
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~---- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE---- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh----
Confidence 6789999999999999876665433221 2346899999999999999999999999999988875431
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc-----CCCC--------CCCeEE
Q psy15151 254 GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD-----GFSS--------TADIKV 320 (431)
Q Consensus 254 g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~-----~~~~--------~~~v~v 320 (431)
..+.+..++.... ...||||||||++ +..++..|+..++... +... -.++.+
T Consensus 88 --k~~dl~~il~~l~--~~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 88 --KAGDLAAILTNLK--EGDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp --SCHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred --hHHHHHHHHHhcC--CCcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 1223333444433 3469999999999 8889999999998632 2111 136889
Q ss_pred EEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCC-HHHHHHHcCCCCHHHHHHHHHHHH
Q psy15151 321 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVN-YEELSRSTDDFNGAQCKAVCVEAG 396 (431)
Q Consensus 321 I~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~~~g~s~~di~~l~~~A~ 396 (431)
|+||++...+.+.++. ||.....+..++.++..+|++.....+++.-+.+ ..+||.++. .+++-..++++++.
T Consensus 153 igATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsr-GtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSR-GTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTT-TSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcC-CChHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999998887777663322 456777666 46676667776653
No 53
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.84 E-value=1.5e-19 Score=176.92 Aligned_cols=214 Identities=20% Similarity=0.260 Sum_probs=157.8
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcc
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGD 255 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~ 255 (431)
+|++++|+++.++.+...+......+ ..+.+++|+||||||||++|+++|++++..+..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 68899999999999988776432221 24567999999999999999999999998876665543211
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC-------------CCCCCeEEEE
Q psy15151 256 GAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF-------------SSTADIKVIA 322 (431)
Q Consensus 256 ~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~-------------~~~~~v~vI~ 322 (431)
...+...+... ..+.+|||||+|.+ +...+..+..+++..... ....++.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l-----------~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRL-----------SPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhh-----------CHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11222223222 34579999999998 445556666666542210 0123478899
Q ss_pred EeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q psy15151 323 ATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALR 401 (431)
Q Consensus 323 ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~ 401 (431)
+||++..+++++++ ||...+.|++|+.+++.++++..+...... ++..+..++..+.|.. +.+..++..+...|..
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~ 211 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQV 211 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHH
Confidence 99999999999999 999899999999999999999887754443 1223667888887755 7788889988877776
Q ss_pred hCCCCcCHHHHHHHHHHH
Q psy15151 402 RGAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 402 ~~~~~It~ed~~~Al~~~ 419 (431)
.+...|+.+++..++..+
T Consensus 212 ~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 212 RGQKIINRDIALKALEML 229 (305)
T ss_pred cCCCCcCHHHHHHHHHHh
Confidence 666779999999999874
No 54
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.84 E-value=2.7e-19 Score=177.04 Aligned_cols=217 Identities=20% Similarity=0.254 Sum_probs=162.6
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
+..|++++|+++.++.+...+....... .++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRG--------EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcC--------CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4589999999999999987775422211 2567899999999999999999999999988777665321
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc------C-CC------CCCCeEE
Q psy15151 254 GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD------G-FS------STADIKV 320 (431)
Q Consensus 254 g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~------~-~~------~~~~v~v 320 (431)
....+..++... ..++||||||||.+ +...+..+..+++... . .. ...++.+
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l-----------~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRL-----------SPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhc-----------chHHHHHHHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 122333444433 34679999999998 3344555666665421 0 00 1134778
Q ss_pred EEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 321 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 321 I~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
|++||++..+++++++ ||...+.|++|+.+++.+|++......++.- +..+..|+..+.|.. +.+..++..+...|
T Consensus 154 i~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a 230 (328)
T PRK00080 154 IGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFA 230 (328)
T ss_pred EeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence 9999999999999998 9999999999999999999998887665542 223677888887655 88889999888888
Q ss_pred HHhCCCCcCHHHHHHHHHHHH
Q psy15151 400 LRRGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 400 ~~~~~~~It~ed~~~Al~~~~ 420 (431)
...+...|+.+++..+++.+.
T Consensus 231 ~~~~~~~I~~~~v~~~l~~~~ 251 (328)
T PRK00080 231 QVKGDGVITKEIADKALDMLG 251 (328)
T ss_pred HHcCCCCCCHHHHHHHHHHhC
Confidence 877777899999999997753
No 55
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.84 E-value=9.2e-20 Score=190.39 Aligned_cols=247 Identities=23% Similarity=0.316 Sum_probs=173.1
Q ss_pred CCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeC
Q psy15151 140 GDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYG 219 (431)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~G 219 (431)
+..+.+.+.+..-++.+.....-.+..-........+|++++|++..++.+..++.. +.+.++||+|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~G 93 (531)
T TIGR02902 27 TNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYG 93 (531)
T ss_pred CCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEEC
Confidence 455566666666565555443333322223344568899999999999999866432 1347899999
Q ss_pred CCCCchHHHHHHHHHHc----------CCceEEeehhhh-------hHhhhcchHH----------------HHHHHHHH
Q psy15151 220 PPGTGKTLLARACAAQT----------KSTFLKLAGPQL-------VQMFIGDGAK----------------LVRDAFAL 266 (431)
Q Consensus 220 ppGtGKT~lakala~~~----------~~~~i~i~~~~l-------~~~~~g~~~~----------------~~~~lf~~ 266 (431)
|||||||++|+++++.. +.+|+.++|... ....+|.... .....+..
T Consensus 94 e~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~ 173 (531)
T TIGR02902 94 PPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR 173 (531)
T ss_pred CCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc
Confidence 99999999999998642 368999998631 1122221000 00112222
Q ss_pred HHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC---------C--------------CCCCCeEEE-E
Q psy15151 267 AKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG---------F--------------SSTADIKVI-A 322 (431)
Q Consensus 267 a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~---------~--------------~~~~~v~vI-~ 322 (431)
+ ..++||||||+.| +...|+.|+.+|+.... . ..+.++.+| +
T Consensus 174 a---~gG~L~IdEI~~L-----------~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~A 239 (531)
T TIGR02902 174 A---HGGVLFIDEIGEL-----------HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGA 239 (531)
T ss_pred c---CCcEEEEechhhC-----------CHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEE
Confidence 2 3469999999999 88899999999876210 0 012244555 5
Q ss_pred EeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q psy15151 323 ATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALR 401 (431)
Q Consensus 323 ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~ 401 (431)
|||.++.++|++++ |+ ..+.|++++.+++.+|++..+++.++. ++..++.|+..+ .+++++.++|+.|+..|..
T Consensus 240 Tt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 240 TTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALG 314 (531)
T ss_pred ecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhh
Confidence 56789999999999 88 478899999999999999999876644 122245555544 3889999999999999988
Q ss_pred hCCCCcCHHHHHHHHHH
Q psy15151 402 RGAAIVTHEDFMDAIME 418 (431)
Q Consensus 402 ~~~~~It~ed~~~Al~~ 418 (431)
+++..|+.+|+.+++..
T Consensus 315 ~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 315 EGRKRILAEDIEWVAEN 331 (531)
T ss_pred CCCcEEcHHHHHHHhCC
Confidence 88889999999999874
No 56
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.83 E-value=4.4e-20 Score=198.27 Aligned_cols=234 Identities=18% Similarity=0.212 Sum_probs=170.0
Q ss_pred EEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCC
Q psy15151 144 GVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGT 223 (431)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGt 223 (431)
+++.++++++..+.......+..++ ...-..|+|++++++.+..++....... .. .-.|..++||+|||||
T Consensus 429 v~~~~tgip~~~~~~~~~~~l~~l~-----~~L~~~ViGQ~~ai~~l~~~i~~~~~gl---~~-~~kp~~~~Lf~GP~Gv 499 (758)
T PRK11034 429 VVARIARIPEKSVSQSDRDTLKNLG-----DRLKMLVFGQDKAIEALTEAIKMSRAGL---GH-EHKPVGSFLFAGPTGV 499 (758)
T ss_pred HHHHHhCCChhhhhhhHHHHHHHHH-----HHhcceEeCcHHHHHHHHHHHHHHhccc---cC-CCCCcceEEEECCCCC
Confidence 5778888888888777777777766 5677889999999999999887532110 00 0024457999999999
Q ss_pred chHHHHHHHHHHcCCceEEeehhhhh-----HhhhcchHHHH-----HHHHHHHHhCCCeEEEEccccccccCCCCCCCc
Q psy15151 224 GKTLLARACAAQTKSTFLKLAGPQLV-----QMFIGDGAKLV-----RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKA 293 (431)
Q Consensus 224 GKT~lakala~~~~~~~i~i~~~~l~-----~~~~g~~~~~~-----~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~ 293 (431)
|||++|+++|..++.++++++|+++. +.++|.+++++ +.+.+.++..+++||||||||++
T Consensus 500 GKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka---------- 569 (758)
T PRK11034 500 GKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA---------- 569 (758)
T ss_pred CHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh----------
Confidence 99999999999999999999999874 45666654443 24556667788899999999998
Q ss_pred CcHHHHHHHHHHHHhhcCCC------CCCCeEEEEEeCCC-------------------------CCCChhhhcCCCcce
Q psy15151 294 GDREVQRTMLELLNQLDGFS------STADIKVIAATNRV-------------------------DILDPALLRSGRLDR 342 (431)
Q Consensus 294 ~~~~~~~~l~~lL~~~~~~~------~~~~v~vI~ttn~~-------------------------~~l~~~l~r~gR~~~ 342 (431)
++++++.|+++|+...-.+ ...++++|+|||.. ..+.|+|++ |+|.
T Consensus 570 -~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ 646 (758)
T PRK11034 570 -HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDN 646 (758)
T ss_pred -hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCE
Confidence 8899999999998642111 12578899999932 237789999 9999
Q ss_pred EEEcCCCCHHHHHHHHHHHHhc-------CCCCCCCC---HHHHHHHc--CCCCHHHHHHHHHHHHHHH
Q psy15151 343 KIEFPHPNEEARARIMQIHSRK-------MNVSPDVN---YEELSRST--DDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 343 ~i~~~~p~~~~r~~Il~~~l~~-------~~~~~~~~---~~~la~~~--~g~s~~di~~l~~~A~~~A 399 (431)
+|.|++++.++..+|+...+.+ .++.-.++ ++.|+... ..+-++.++.+++.-....
T Consensus 647 ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~ 715 (758)
T PRK11034 647 IIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKP 715 (758)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHH
Confidence 9999999999999999876542 22322222 44555432 2334566776666544433
No 57
>KOG1051|consensus
Probab=99.82 E-value=8.5e-20 Score=194.83 Aligned_cols=305 Identities=17% Similarity=0.177 Sum_probs=203.3
Q ss_pred cccccchhhHHhcCCHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhccCCce
Q psy15151 15 WEGEESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVM-------------RISHELQAQNEKIRENTEKIKVNKNLPYL 81 (431)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (431)
|-+-+++|+.|++.++.... ++.++..|+++.+ ..+..++.+...++..++..+.++..+..
T Consensus 411 ~~~~~~lP~wL~~~~~~~~~-----~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~ 485 (898)
T KOG1051|consen 411 KSQAESLPPWLQNLERVDIK-----LQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKLKKNS 485 (898)
T ss_pred hhhhhhCCHHHHhhhhhhhh-----hHHHHHHHHHhhhhhhccccccccccccccccccchhhhccchhHHhhhccccCC
Confidence 44445666666665554332 3344444443333 22333336666777777777777665554
Q ss_pred eeeeeecccCCCCC-ccccccccccccccCCcEEEEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhH
Q psy15151 82 VSNVIELLDVDPQD-TEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEY 160 (431)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (431)
..+..- +...... .+..+..++|...+..... +...+.. ....+.. .+..++++++..+...+
T Consensus 486 ~~~~~~-~~k~~r~~d~~~~~~l~~~~~p~~~~~--~~~~~~~---------~~~~i~~----~~s~~tgip~~~~~~~e 549 (898)
T KOG1051|consen 486 LDRNSL-LAKAHRPNDYTRETDLRYGRIPDELSE--KSNDNQG---------GESDISE----VVSRWTGIPVDRLAEAE 549 (898)
T ss_pred cccchh-hhcccCCCCcchhhhccccccchhhhh--hcccccC---------Cccchhh----hhhhhcCCchhhhhhhH
Confidence 443332 1111111 1333455555555522211 2111111 1112222 67889999999998888
Q ss_pred HHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---C
Q psy15151 161 DARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---K 237 (431)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~ 237 (431)
..++..|. ...-..|+||++++..+.++|....... .+. .|...+||.||.|+|||.||+++|..+ .
T Consensus 550 ~~~l~~L~-----~~L~~~V~gQ~eAv~aIa~AI~~sr~gl---~~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse 619 (898)
T KOG1051|consen 550 AERLKKLE-----ERLHERVIGQDEAVAAIAAAIRRSRAGL---KDP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSE 619 (898)
T ss_pred HHHHHHHH-----HHHHhhccchHHHHHHHHHHHHhhhccc---CCC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCc
Confidence 88888888 7788999999999999999998653211 000 366789999999999999999999974 4
Q ss_pred CceEEeehhhhhH--hhhcchHHH-----HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 238 STFLKLAGPQLVQ--MFIGDGAKL-----VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 238 ~~~i~i~~~~l~~--~~~g~~~~~-----~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
..|+++++++|.+ +..|.++++ ..++++.+++.+++||+|||||.. |+.+++.|+++++...
T Consensus 620 ~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~Gr 688 (898)
T KOG1051|consen 620 ENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGR 688 (898)
T ss_pred cceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCc
Confidence 5799999998754 444444433 357899999999999999999996 9999999999999865
Q ss_pred CCCCC------CCeEEEEEeCC------------------------------------C----CCCChhhhcCCCcceEE
Q psy15151 311 GFSST------ADIKVIAATNR------------------------------------V----DILDPALLRSGRLDRKI 344 (431)
Q Consensus 311 ~~~~~------~~v~vI~ttn~------------------------------------~----~~l~~~l~r~gR~~~~i 344 (431)
-.++. .+++||||+|. . ..+.|+|.+ |++..+
T Consensus 689 ltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~n--rid~i~ 766 (898)
T KOG1051|consen 689 LTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLN--RIDELD 766 (898)
T ss_pred cccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhc--ccceee
Confidence 44443 58999999884 1 234456666 888888
Q ss_pred EcCCCCHHHHHHHHHHHHh
Q psy15151 345 EFPHPNEEARARIMQIHSR 363 (431)
Q Consensus 345 ~~~~p~~~~r~~Il~~~l~ 363 (431)
.|.+.+.++..+|+...+.
T Consensus 767 lf~~l~~~~~~~i~~~~~~ 785 (898)
T KOG1051|consen 767 LNLPLDRDELIEIVNKQLT 785 (898)
T ss_pred eecccchhhHhhhhhhHHH
Confidence 8989998887777765553
No 58
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2e-19 Score=185.02 Aligned_cols=227 Identities=21% Similarity=0.323 Sum_probs=163.5
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh-----
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL----- 248 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l----- 248 (431)
.+.-.+..|++++++++.+++..-...... .+.-++|+||||+|||+|++++|..+++.|++++...+
T Consensus 319 ~iLd~dHYGLekVKeRIlEyLAV~~l~~~~-------kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAE 391 (782)
T COG0466 319 KILDKDHYGLEKVKERILEYLAVQKLTKKL-------KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAE 391 (782)
T ss_pred HHhcccccCchhHHHHHHHHHHHHHHhccC-------CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHH
Confidence 566778899999999999988754333221 33567899999999999999999999999999976433
Q ss_pred ----hHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc----------CCCC
Q psy15151 249 ----VQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD----------GFSS 314 (431)
Q Consensus 249 ----~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~----------~~~~ 314 (431)
-..|+|..++.+-+-...+....| +++|||||.++.+- .+++ ...|+++|+-=. --..
T Consensus 392 IRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~-----rGDP--aSALLEVLDPEQN~~F~DhYLev~yD 463 (782)
T COG0466 392 IRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF-----RGDP--ASALLEVLDPEQNNTFSDHYLEVPYD 463 (782)
T ss_pred hccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC-----CCCh--HHHHHhhcCHhhcCchhhccccCccc
Confidence 224899999998888888888777 89999999995432 2333 377888886411 1112
Q ss_pred CCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHH-----hcCCCCC------CCCHHHHHHHcCCC
Q psy15151 315 TADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHS-----RKMNVSP------DVNYEELSRSTDDF 383 (431)
Q Consensus 315 ~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l-----~~~~~~~------~~~~~~la~~~~g~ 383 (431)
-++|++|+|+|..+.++.+|+. |+ .+|.++.++..+..+|.+.|+ +..++.. +..+..|.+....-
T Consensus 464 LS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTRE 540 (782)
T COG0466 464 LSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTRE 540 (782)
T ss_pred hhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHh
Confidence 3689999999999999999999 99 699999999999999999775 3333331 11133333322111
Q ss_pred CH-----HHHHHHHHHHHHHHHHhCCC---CcCHHHHHHHHHH
Q psy15151 384 NG-----AQCKAVCVEAGMIALRRGAA---IVTHEDFMDAIME 418 (431)
Q Consensus 384 s~-----~di~~l~~~A~~~A~~~~~~---~It~ed~~~Al~~ 418 (431)
+| ++|..+|+.++..-...... .|+..++.+-+..
T Consensus 541 AGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 541 AGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCC
Confidence 22 56778888777665554332 4677777766544
No 59
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.8e-18 Score=160.64 Aligned_cols=217 Identities=19% Similarity=0.267 Sum_probs=172.4
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
+..|++.+|+++.++.+.-.+.....+. ....++|||||||.|||+||+.+|++++..+-..+++.+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l----- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL----- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc-----
Confidence 5689999999999999988877654433 345789999999999999999999999999887777654
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc-------CCCC------CCCeEE
Q psy15151 254 GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD-------GFSS------TADIKV 320 (431)
Q Consensus 254 g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~-------~~~~------~~~v~v 320 (431)
+.++.+-.++.....+ .||||||||++ ++.+...|+-.++... +... -.++.+
T Consensus 89 -eK~gDlaaiLt~Le~~--DVLFIDEIHrl-----------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 89 -EKPGDLAAILTNLEEG--DVLFIDEIHRL-----------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred -cChhhHHHHHhcCCcC--CeEEEehhhhc-----------ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 2334444444444433 69999999999 6777788888887631 1111 246789
Q ss_pred EEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 321 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDV-NYEELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 321 I~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
|++|.+...+...++. ||.....+..++.++..+|+......+.+.-+. ...+||.++.| +++=-..++++...+|
T Consensus 155 IGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa 231 (332)
T COG2255 155 IGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFA 231 (332)
T ss_pred eeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999988877766333 35567777765 5677788999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHH
Q psy15151 400 LRRGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 400 ~~~~~~~It~ed~~~Al~~~~ 420 (431)
.-++...|+.+-...|++.+.
T Consensus 232 ~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 232 QVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHhcCCcccHHHHHHHHHHhC
Confidence 989999999988888887654
No 60
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.81 E-value=1.3e-18 Score=190.82 Aligned_cols=230 Identities=18% Similarity=0.239 Sum_probs=170.9
Q ss_pred EEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccc---cChHHHHhcCCCCCCCceeeCC
Q psy15151 144 GVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPM---THKEKFVNLGIQPPKGVLLYGP 220 (431)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~---~~~~~~~~~g~~~~~~vLl~Gp 220 (431)
+++.+|++|+..+..+...++..++ ...-..|+|++.++..+..++.... ..|. .|..++||+||
T Consensus 480 ~~~~~tgip~~~~~~~~~~~l~~l~-----~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~-------~p~~~~lf~Gp 547 (821)
T CHL00095 480 IVSAWTGIPVNKLTKSESEKLLHME-----ETLHKRIIGQDEAVVAVSKAIRRARVGLKNPN-------RPIASFLFSGP 547 (821)
T ss_pred HHHHHHCCCchhhchhHHHHHHHHH-----HHhcCcCcChHHHHHHHHHHHHHHhhcccCCC-------CCceEEEEECC
Confidence 7899999999999988888888777 6677899999999999999887432 1221 13356899999
Q ss_pred CCCchHHHHHHHHHHc---CCceEEeehhhhh-----HhhhcchHHHH-----HHHHHHHHhCCCeEEEEccccccccCC
Q psy15151 221 PGTGKTLLARACAAQT---KSTFLKLAGPQLV-----QMFIGDGAKLV-----RDAFALAKEKAPAIIFIDELDAIGTKR 287 (431)
Q Consensus 221 pGtGKT~lakala~~~---~~~~i~i~~~~l~-----~~~~g~~~~~~-----~~lf~~a~~~~p~vl~iDEid~l~~~r 287 (431)
||||||++|+++|..+ +.++++++++++. ++++|.+++++ +.+.+.++.++++||+|||+|.+
T Consensus 548 ~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka---- 623 (821)
T CHL00095 548 TGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA---- 623 (821)
T ss_pred CCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC----
Confidence 9999999999999986 4689999998874 34555544443 35778888888899999999997
Q ss_pred CCCCCcCcHHHHHHHHHHHHhhcCCC------CCCCeEEEEEeCCCC---------------------------------
Q psy15151 288 FDSEKAGDREVQRTMLELLNQLDGFS------STADIKVIAATNRVD--------------------------------- 328 (431)
Q Consensus 288 ~~~~~~~~~~~~~~l~~lL~~~~~~~------~~~~v~vI~ttn~~~--------------------------------- 328 (431)
++++++.|+++++...-.+ ...++++|+|||...
T Consensus 624 -------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~ 696 (821)
T CHL00095 624 -------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNE 696 (821)
T ss_pred -------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHH
Confidence 8999999999998742111 135788999998521
Q ss_pred ----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcC-------CCCCCC---CHHHHHHHc--CCCCHHHHHHHH
Q psy15151 329 ----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKM-------NVSPDV---NYEELSRST--DDFNGAQCKAVC 392 (431)
Q Consensus 329 ----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~~~~---~~~~la~~~--~g~s~~di~~l~ 392 (431)
.+.|+|++ |+|.+|.|.+++.++..+|+...+.++ ++.-.+ ..+.|+... ..+-++.|+.++
T Consensus 697 ~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i 774 (821)
T CHL00095 697 ELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAI 774 (821)
T ss_pred HHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHH
Confidence 14577888 999999999999999999998776542 111111 144566542 234567777766
Q ss_pred HHHHHH
Q psy15151 393 VEAGMI 398 (431)
Q Consensus 393 ~~A~~~ 398 (431)
+.-...
T Consensus 775 ~~~i~~ 780 (821)
T CHL00095 775 MRLLED 780 (821)
T ss_pred HHHHHH
Confidence 654443
No 61
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.81 E-value=1.9e-19 Score=195.19 Aligned_cols=231 Identities=20% Similarity=0.314 Sum_probs=167.4
Q ss_pred EEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCC----CCCCceeeC
Q psy15151 144 GVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQ----PPKGVLLYG 219 (431)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~----~~~~vLl~G 219 (431)
+++.++++++..+.......+..+. ......|+|++++++.+...+... +.|+. |..++||+|
T Consensus 425 ~i~~~tgiP~~~~~~~~~~~l~~l~-----~~l~~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~G 491 (731)
T TIGR02639 425 VVAKMAHIPVKTVSVDDREKLKNLE-----KNLKAKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTG 491 (731)
T ss_pred HHHHHhCCChhhhhhHHHHHHHHHH-----HHHhcceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEEC
Confidence 3455666666665555556666655 567788999999999999887742 22222 334689999
Q ss_pred CCCCchHHHHHHHHHHcCCceEEeehhhhhH-----hhhcchHHHH-----HHHHHHHHhCCCeEEEEccccccccCCCC
Q psy15151 220 PPGTGKTLLARACAAQTKSTFLKLAGPQLVQ-----MFIGDGAKLV-----RDAFALAKEKAPAIIFIDELDAIGTKRFD 289 (431)
Q Consensus 220 ppGtGKT~lakala~~~~~~~i~i~~~~l~~-----~~~g~~~~~~-----~~lf~~a~~~~p~vl~iDEid~l~~~r~~ 289 (431)
|||||||++|+++|..++.++++++|+++.+ .++|.+++++ +.+.+.++..+++||+|||||.+
T Consensus 492 p~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka------ 565 (731)
T TIGR02639 492 PTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA------ 565 (731)
T ss_pred CCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc------
Confidence 9999999999999999999999999998754 3455544332 34667777888999999999997
Q ss_pred CCCcCcHHHHHHHHHHHHhhcCCC------CCCCeEEEEEeCCCC-------------------------CCChhhhcCC
Q psy15151 290 SEKAGDREVQRTMLELLNQLDGFS------STADIKVIAATNRVD-------------------------ILDPALLRSG 338 (431)
Q Consensus 290 ~~~~~~~~~~~~l~~lL~~~~~~~------~~~~v~vI~ttn~~~-------------------------~l~~~l~r~g 338 (431)
++++++.|+++++...-.+ ...++++|+|||... .+.|+|++
T Consensus 566 -----~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~-- 638 (731)
T TIGR02639 566 -----HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN-- 638 (731)
T ss_pred -----CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--
Confidence 8899999999998742111 124788999998631 26788888
Q ss_pred CcceEEEcCCCCHHHHHHHHHHHHhcC-------CCC---CCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHH
Q psy15151 339 RLDRKIEFPHPNEEARARIMQIHSRKM-------NVS---PDVNYEELSRS--TDDFNGAQCKAVCVEAGMIAL 400 (431)
Q Consensus 339 R~~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~---~~~~~~~la~~--~~g~s~~di~~l~~~A~~~A~ 400 (431)
|||.+|.|.+++.++..+|++..++++ ++. ++..++.|+.. ...+.++.|+.+++.-...++
T Consensus 639 Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l 712 (731)
T TIGR02639 639 RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPL 712 (731)
T ss_pred cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHH
Confidence 999999999999999999999877532 111 11224456653 334566777777776555443
No 62
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=1.5e-18 Score=188.29 Aligned_cols=222 Identities=23% Similarity=0.311 Sum_probs=166.4
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i 243 (431)
.-.++.++|+++.+..+.+.+... ...+++|+||||||||++|+++|... +..++.+
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~~-------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCRR-------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhcC-------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 457889999999999988766532 34689999999999999999999976 6778999
Q ss_pred ehhhhh--HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15151 244 AGPQLV--QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321 (431)
Q Consensus 244 ~~~~l~--~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI 321 (431)
+++.++ .++.|+.+..++.+|+.+....++||||||||.+++.+..+ +++.+.++.|...|. .+.+.+|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~~~~~L~~~l~-------~g~i~~I 315 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMDASNLLKPALS-------SGKLRCI 315 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHHHHHHHHHHHh-------CCCeEEE
Confidence 998887 47889999999999999988788999999999998765322 233445566655542 4788999
Q ss_pred EEeCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCC----CC-CCCCHHHHHHHcCCCC-----HH
Q psy15151 322 AATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMN----VS-PDVNYEELSRSTDDFN-----GA 386 (431)
Q Consensus 322 ~ttn~~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~----~~-~~~~~~~la~~~~g~s-----~~ 386 (431)
++||..+ ..|+++.| ||. .|.++.|+.+++.+|++.....+. +. .+..+..++..+..|- +.
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ 392 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPD 392 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCH
Confidence 9999643 47899999 996 799999999999999997655422 11 2223556666665553 33
Q ss_pred HHHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHHHH
Q psy15151 387 QCKAVCVEAGMIALRR----GAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 387 di~~l~~~A~~~A~~~----~~~~It~ed~~~Al~~~~ 420 (431)
..-.++.+|+.....+ ....|+.+|+..++....
T Consensus 393 kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 3346667766543322 234699999999988864
No 63
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.7e-18 Score=178.01 Aligned_cols=222 Identities=44% Similarity=0.688 Sum_probs=196.0
Q ss_pred ccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEE
Q psy15151 196 LPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAII 275 (431)
Q Consensus 196 ~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl 275 (431)
.++.+++.|..+++.++.+++++||||||||+++++++.. +..+..+++++..+++.|......+.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4677899999999999999999999999999999999999 766688999999999999999999999999999999999
Q ss_pred EEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHH
Q psy15151 276 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARA 355 (431)
Q Consensus 276 ~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~ 355 (431)
++||+|.+.+.+......... ....+++..+++.. ...+++++.+|++..+++++++++||+..+.++.|+...+.
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~---~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVER---RVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred eechhhhcccCccccccchhh---HHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHH
Confidence 999999999988662222223 44555566666655 44488889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------CCCcCHHHHHHHHHHHHHh
Q psy15151 356 RIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG------AAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 356 ~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~------~~~It~ed~~~Al~~~~~~ 422 (431)
+|+..+...+....+.+...++..+.|+.++++..+|..+...+.++. ...++.+++..+++.+.+.
T Consensus 157 ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 157 EILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 999999998888888999999999999999999999999999988885 3468999999999998764
No 64
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.9e-18 Score=167.62 Aligned_cols=203 Identities=25% Similarity=0.366 Sum_probs=143.3
Q ss_pred CCCcccccCchHHHHH---HHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 174 TEQYSDIGGLDKQIQE---LIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~---l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
+.++++++||++.+.. +...+.. ....+++||||||||||++|+.||...+..|..++...
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 6788999999877632 3333332 24478999999999999999999999999999998742
Q ss_pred hhhcchHHHHHHHHHHHHhC----CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe--
Q psy15151 251 MFIGDGAKLVRDAFALAKEK----APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT-- 324 (431)
Q Consensus 251 ~~~g~~~~~~~~lf~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt-- 324 (431)
.+.+.++.+++.++.. ...|||+||||++ +..-|..|+-.++ ++.+++|++|
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQD~lLp~vE-------~G~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQDALLPHVE-------NGTIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------Chhhhhhhhhhhc-------CCeEEEEeccCC
Confidence 3556788899888553 3579999999999 6667778877764 4778888876
Q ss_pred CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHh--cCCCC------CCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15151 325 NRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSR--KMNVS------PDVNYEELSRSTDDFNGAQCKAVCVEAG 396 (431)
Q Consensus 325 n~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~--~~~~~------~~~~~~~la~~~~g~s~~di~~l~~~A~ 396 (431)
|+.-.+.+++++ |. .++.|.+++.++..+++...+. ..++. ++..++.++..+ .+|.+.+++..-
T Consensus 142 NPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s----~GD~R~aLN~LE 214 (436)
T COG2256 142 NPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLS----NGDARRALNLLE 214 (436)
T ss_pred CCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhc----CchHHHHHHHHH
Confidence 566779999999 76 5789999999999999988432 22222 111244555544 455565555444
Q ss_pred HHHHHhCC-CCcCHHHHHHHHHHHHH
Q psy15151 397 MIALRRGA-AIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 397 ~~A~~~~~-~~It~ed~~~Al~~~~~ 421 (431)
+.+..... ..++.+++.+.+.+-..
T Consensus 215 ~~~~~~~~~~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 215 LAALSAEPDEVLILELLEEILQRRSA 240 (436)
T ss_pred HHHHhcCCCcccCHHHHHHHHhhhhh
Confidence 43333222 23447777777766544
No 65
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.78 E-value=2.2e-17 Score=165.71 Aligned_cols=225 Identities=22% Similarity=0.265 Sum_probs=153.2
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC---------CceEEee
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK---------STFLKLA 244 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~---------~~~i~i~ 244 (431)
+...++++|.+++++.+...+...+.. ..+.+++|+||||||||++++++++++. ..+++++
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 444568999999999999887643321 2456899999999999999999998642 4678888
Q ss_pred hhhhh----------Hhhh--cc--------hHHHHHHHHHHHH-hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHH
Q psy15151 245 GPQLV----------QMFI--GD--------GAKLVRDAFALAK-EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTML 303 (431)
Q Consensus 245 ~~~l~----------~~~~--g~--------~~~~~~~lf~~a~-~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 303 (431)
|.... ..+. |. .......++.... ...+.||+|||+|.+.... +..+.
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~ 150 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----------DDLLY 150 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----------cHHHH
Confidence 75432 1121 11 1122344555443 3457799999999996221 12444
Q ss_pred HHHHhhcC-CCCCCCeEEEEEeCCCC---CCChhhhcCCCcc-eEEEcCCCCHHHHHHHHHHHHhcCCCCCCCC---HHH
Q psy15151 304 ELLNQLDG-FSSTADIKVIAATNRVD---ILDPALLRSGRLD-RKIEFPHPNEEARARIMQIHSRKMNVSPDVN---YEE 375 (431)
Q Consensus 304 ~lL~~~~~-~~~~~~v~vI~ttn~~~---~l~~~l~r~gR~~-~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~---~~~ 375 (431)
.+++.... .....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.++........++ +..
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ 228 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPL 228 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHH
Confidence 55543211 12236788999999876 47778877 774 6899999999999999998886211111111 233
Q ss_pred HHH---HcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q psy15151 376 LSR---STDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 376 la~---~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~ 421 (431)
++. .+.| ..+.+..+|+.|+..|..++...|+.+|+..|++.+..
T Consensus 229 i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~ 276 (365)
T TIGR02928 229 CAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK 276 (365)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 333 3334 34667778999999999998899999999999988754
No 66
>KOG2004|consensus
Probab=99.77 E-value=3e-18 Score=175.49 Aligned_cols=172 Identities=24% Similarity=0.404 Sum_probs=138.2
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh----
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV---- 249 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~---- 249 (431)
...-+|..|+++.++++.+++.....+.. ..++-+.|+||||+|||+++|+||..+++.|++++...+.
T Consensus 407 ~iLdeDHYgm~dVKeRILEfiAV~kLrgs-------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAe 479 (906)
T KOG2004|consen 407 EILDEDHYGMEDVKERILEFIAVGKLRGS-------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAE 479 (906)
T ss_pred HhhcccccchHHHHHHHHHHHHHHhhccc-------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHh
Confidence 56678889999999999999876544332 2456788999999999999999999999999999764332
Q ss_pred -----HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHh------hcC----CCC
Q psy15151 250 -----QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ------LDG----FSS 314 (431)
Q Consensus 250 -----~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~------~~~----~~~ 314 (431)
..|+|..++.+-+.+.......| +++|||||+++. +..+++ ...|+++|+- +|. --.
T Consensus 480 IkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~-----g~qGDP--asALLElLDPEQNanFlDHYLdVp~D 551 (906)
T KOG2004|consen 480 IKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS-----GHQGDP--ASALLELLDPEQNANFLDHYLDVPVD 551 (906)
T ss_pred hcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC-----CCCCCh--HHHHHHhcChhhccchhhhccccccc
Confidence 24899999999899999888887 899999999962 122333 3678888864 111 112
Q ss_pred CCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHh
Q psy15151 315 TADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSR 363 (431)
Q Consensus 315 ~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~ 363 (431)
-..|++|+|+|..+.++++|+. |+ .+|+++-+..++..+|.+.|+-
T Consensus 552 LSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 552 LSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 3689999999999999999999 99 6899999999999999998763
No 67
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.77 E-value=1.2e-17 Score=179.66 Aligned_cols=222 Identities=24% Similarity=0.313 Sum_probs=164.3
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i 243 (431)
.-.++.++|.++.+..+.+.+... ...++||+||||||||++|+++|... +..++.+
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r~-------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 456788999999999999877642 34678999999999999999999863 4556666
Q ss_pred ehhhhh--HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15151 244 AGPQLV--QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321 (431)
Q Consensus 244 ~~~~l~--~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI 321 (431)
+...++ .++.|+.+..++.+|..+....++||||||||.|++.+..+ .+..+..+.|..++. .+.+.+|
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~--~g~~d~~nlLkp~L~-------~g~i~vI 319 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLLS-------SGKIRVI 319 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC--CcHHHHHHHHHHHHh-------CCCeEEE
Confidence 666665 45778889999999999888888999999999998765321 223444455555543 4789999
Q ss_pred EEeCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHH-----HHHHc-----CCCCHH
Q psy15151 322 AATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEE-----LSRST-----DDFNGA 386 (431)
Q Consensus 322 ~ttn~~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~-----la~~~-----~g~s~~ 386 (431)
++||.++ ..|++|.| ||. .|.++.|+.+++..|++.....+....++.+.. .+..+ ..+-+.
T Consensus 320 gATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPd 396 (758)
T PRK11034 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPD 396 (758)
T ss_pred ecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChH
Confidence 9999865 47999999 995 799999999999999998877666555554332 22222 233556
Q ss_pred HHHHHHHHHHHHHH----HhCCCCcCHHHHHHHHHHHH
Q psy15151 387 QCKAVCVEAGMIAL----RRGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 387 di~~l~~~A~~~A~----~~~~~~It~ed~~~Al~~~~ 420 (431)
....++.+|+.... ......|+.+|+.+.+...-
T Consensus 397 Kaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 77788888886442 12234688888888776543
No 68
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=4.6e-17 Score=165.02 Aligned_cols=202 Identities=18% Similarity=0.217 Sum_probs=144.8
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST------------- 239 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~------------- 239 (431)
.+.+|++++|++..+..|..++... ..++.+||+||+|||||++|+.+|+.+++.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 3678999999999999998887642 123568999999999999999999987652
Q ss_pred -----------eEEeehhhhhHhhhcchHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 240 -----------FLKLAGPQLVQMFIGDGAKLVRDAFALAK----EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 240 -----------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
++.+++.. ..+...++.+.+.+. .+.+.|+||||+|.| +.+.++.|+.
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~~A~NALLK 143 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TDQSFNALLK 143 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CHHHHHHHHH
Confidence 12222110 112334555554443 345679999999999 6667777777
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~ 383 (431)
.|++ ...++++|++|+.+..+.+.+++ |+ ..+.|.+++.++..+.++..+...++. .+..+..|+..+.|
T Consensus 144 tLEE-----Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G- 214 (484)
T PRK14956 144 TLEE-----PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG- 214 (484)
T ss_pred Hhhc-----CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 6654 45788899999999999999999 88 578999999999999999888765543 22336667776664
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
+.++.-+++.++...+ ...||.+++.+.+
T Consensus 215 d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 215 SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 4577777777665432 2347777765543
No 69
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.75 E-value=1.7e-16 Score=160.94 Aligned_cols=226 Identities=23% Similarity=0.302 Sum_probs=153.5
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc-----CCceEEeehhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT-----KSTFLKLAGPQL 248 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~-----~~~~i~i~~~~l 248 (431)
....+.++|.+++++.+...+...+.. ..+.+++|+||||||||++++.+++.+ +..+++++|...
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 345577999999999998887643321 144679999999999999999999875 467888888533
Q ss_pred ----------hHhhhcc-------h-HHHHHHHHHHHHh-CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhh
Q psy15151 249 ----------VQMFIGD-------G-AKLVRDAFALAKE-KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL 309 (431)
Q Consensus 249 ----------~~~~~g~-------~-~~~~~~lf~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~ 309 (431)
...+.+. . ......+.+.... ..+.||+|||+|.+.... .. ..+..+++.+
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~---~~l~~l~~~~ 166 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GN---DVLYSLLRAH 166 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------Cc---hHHHHHHHhh
Confidence 2222221 1 1223333343333 456899999999996221 11 3444555443
Q ss_pred cCCCCCCCeEEEEEeCCCC---CCChhhhcCCCcc-eEEEcCCCCHHHHHHHHHHHHhcCCCC---CCCCHHHHHHHcCC
Q psy15151 310 DGFSSTADIKVIAATNRVD---ILDPALLRSGRLD-RKIEFPHPNEEARARIMQIHSRKMNVS---PDVNYEELSRSTDD 382 (431)
Q Consensus 310 ~~~~~~~~v~vI~ttn~~~---~l~~~l~r~gR~~-~~i~~~~p~~~~r~~Il~~~l~~~~~~---~~~~~~~la~~~~g 382 (431)
.... ..++.+|+++|..+ .+++.+.+ |+. ..|.|++++.++..+|++.+++.-... .+..++.++..+.+
T Consensus 167 ~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 243 (394)
T PRK00411 167 EEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAR 243 (394)
T ss_pred hccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHH
Confidence 3322 23788899988754 46777776 553 578999999999999999887532111 22225556665533
Q ss_pred C--CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q psy15151 383 F--NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 383 ~--s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~ 421 (431)
. ..+.+..+|..|+..|..++...|+.+|+.+|+..+..
T Consensus 244 ~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 244 EHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 2 34556688999999999999999999999999998854
No 70
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=5.9e-17 Score=166.33 Aligned_cols=205 Identities=18% Similarity=0.263 Sum_probs=141.3
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC--------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS-------------- 238 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~-------------- 238 (431)
.+.+|++++|++..+..+...+... ..++++||+||||||||++|+++|+.+++
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 3678999999999988888766632 13466899999999999999999998764
Q ss_pred ----------ceEEeehhhhhHhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 239 ----------TFLKLAGPQLVQMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 239 ----------~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
.++.++++. ..+...++.+.+.+.. +.+.||||||+|.+ ..+.+..|+.
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L-----------t~~a~~~LLk 139 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML-----------TKEAFNALLK 139 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh-----------HHHHHHHHHH
Confidence 233333321 1123445555555443 23579999999998 4445555655
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~ 383 (431)
.++. ..+.+++|++|+.+..+++++.+ |+ ..+.|++++.++...+++..+...++. ++..+..|+..+.|
T Consensus 140 ~LE~-----p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G- 210 (472)
T PRK14962 140 TLEE-----PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG- 210 (472)
T ss_pred HHHh-----CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-
Confidence 5543 34567788888888899999999 88 589999999999999999887654433 12236677776653
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~ 419 (431)
..+.+-+.+..+...+ + ..||.+++.+++...
T Consensus 211 dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~~~ 242 (472)
T PRK14962 211 GLRDALTMLEQVWKFS---E-GKITLETVHEALGLI 242 (472)
T ss_pred CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHcCC
Confidence 4455555555444322 2 348999998877543
No 71
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.73 E-value=1.6e-16 Score=161.99 Aligned_cols=198 Identities=25% Similarity=0.358 Sum_probs=142.6
Q ss_pred CCCcccccCchHHHHH---HHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 174 TEQYSDIGGLDKQIQE---LIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~---l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
+.++++++|+++.+.. +...+... ...+++|+||||||||++|+++|+..+..|+.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~-------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAG-------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcC-------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 5789999999998766 66665421 33579999999999999999999999999999987532
Q ss_pred hhhcchHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe--
Q psy15151 251 MFIGDGAKLVRDAFALAK----EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT-- 324 (431)
Q Consensus 251 ~~~g~~~~~~~~lf~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt-- 324 (431)
+...++.+++.+. .+...||||||+|.+ ....+..|+..++. +.+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l-----------~~~~q~~LL~~le~-------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRF-----------NKAQQDALLPHVED-------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhh-----------CHHHHHHHHHHhhc-------CcEEEEEeCCC
Confidence 2234455555543 235679999999998 55666777666643 456677665
Q ss_pred CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 325 NRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKM-----NVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 325 n~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~-----~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
|....+++++++ |+ ..+.|++++.++...+++..+... .+. +..+..++..+. ...+.+.+++..+...
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~-Gd~R~aln~Le~~~~~- 203 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLAN-GDARRALNLLELAALG- 203 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCC-CCHHHHHHHHHHHHHc-
Confidence 344578899999 88 789999999999999999877542 222 122456666663 4556666666665533
Q ss_pred HHhCCCCcCHHHHHHHHHHH
Q psy15151 400 LRRGAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 400 ~~~~~~~It~ed~~~Al~~~ 419 (431)
...|+.+++..++...
T Consensus 204 ----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 204 ----VDSITLELLEEALQKR 219 (413)
T ss_pred ----cCCCCHHHHHHHHhhh
Confidence 4568999988888764
No 72
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.3e-16 Score=167.48 Aligned_cols=206 Identities=16% Similarity=0.161 Sum_probs=143.5
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceE--Ee------e
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFL--KL------A 244 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i--~i------~ 244 (431)
...+|++|+|++..++.|..++... ..++.+||+||+|||||++++.+|+.+++..- .. +
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 4678999999999999998887631 13466899999999999999999998765210 00 1
Q ss_pred hhhhhHh----h------hcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 245 GPQLVQM----F------IGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 245 ~~~l~~~----~------~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
|..+... + ...+...++.+++.+.. ..+.|+||||+|.| +...++.|+..|++
T Consensus 79 Cr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~~A~NALLKtLEE-- 145 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TNHAFNAMLKTLEE-- 145 (830)
T ss_pred HHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CHHHHHHHHHHHHh--
Confidence 1111100 0 01123445666665543 34579999999999 55667777777765
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHH
Q psy15151 311 GFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCK 389 (431)
Q Consensus 311 ~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~ 389 (431)
...++.+|++||.+..|.+.+++ |+ ..+.|..++.++..+.|+..+...++. ++..+..|+..+.|- .++..
T Consensus 146 ---PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-mRdAL 218 (830)
T PRK07003 146 ---PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-MRDAL 218 (830)
T ss_pred ---cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHH
Confidence 35678899999999999999999 88 789999999999999999888765544 222356677766654 47777
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHH
Q psy15151 390 AVCVEAGMIALRRGAAIVTHEDFMD 414 (431)
Q Consensus 390 ~l~~~A~~~A~~~~~~~It~ed~~~ 414 (431)
+++.++.... ...|+.+++..
T Consensus 219 sLLdQAia~~----~~~It~~~V~~ 239 (830)
T PRK07003 219 SLTDQAIAYS----ANEVTETAVSG 239 (830)
T ss_pred HHHHHHHHhc----cCCcCHHHHHH
Confidence 7776666432 22355555443
No 73
>PRK04195 replication factor C large subunit; Provisional
Probab=99.73 E-value=1.1e-16 Score=166.14 Aligned_cols=208 Identities=26% Similarity=0.340 Sum_probs=144.0
Q ss_pred cCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 171 ~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
...+.++++++|++++++.+..++..... | .+++++||+||||||||++|+++|++++..++.+++++...
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 33467899999999999999998864331 1 24688999999999999999999999999999999876432
Q ss_pred hhhcchHHHHHHHHHHHHh------CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q psy15151 251 MFIGDGAKLVRDAFALAKE------KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT 324 (431)
Q Consensus 251 ~~~g~~~~~~~~lf~~a~~------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt 324 (431)
. ..+..+...+.. ..+.||+|||+|.+.... +......+..++.. .+..+|+++
T Consensus 78 ~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~~-------~~~~iIli~ 137 (482)
T PRK04195 78 A------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIKK-------AKQPIILTA 137 (482)
T ss_pred H------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHHc-------CCCCEEEec
Confidence 1 122222222211 256799999999985421 33344555555542 334577888
Q ss_pred CCCCCCCh-hhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Q psy15151 325 NRVDILDP-ALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402 (431)
Q Consensus 325 n~~~~l~~-~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~ 402 (431)
|.+..+.+ .+++ |+ ..|.|++|+..++..+++..+...++. ++..+..|+..+ ++|++.+++.....+ .
T Consensus 138 n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s----~GDlR~ain~Lq~~a--~ 208 (482)
T PRK04195 138 NDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERS----GGDLRSAINDLQAIA--E 208 (482)
T ss_pred cCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHh--c
Confidence 98888877 5554 44 689999999999999999888765544 122366666654 456777776655433 4
Q ss_pred CCCCcCHHHHHHHH
Q psy15151 403 GAAIVTHEDFMDAI 416 (431)
Q Consensus 403 ~~~~It~ed~~~Al 416 (431)
+...|+.+++....
T Consensus 209 ~~~~it~~~v~~~~ 222 (482)
T PRK04195 209 GYGKLTLEDVKTLG 222 (482)
T ss_pred CCCCCcHHHHHHhh
Confidence 55567887775443
No 74
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.73 E-value=1.4e-17 Score=180.37 Aligned_cols=225 Identities=19% Similarity=0.268 Sum_probs=151.3
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh-----
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV----- 249 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~----- 249 (431)
..-.++.|+++.++++.+++....... -..+..++|+||||+|||++++.+|..++.+|++++++...
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~-------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i 391 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVN-------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEI 391 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhcc-------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHh
Confidence 445679999999999998776432211 12345799999999999999999999999999998765432
Q ss_pred ----HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhh------cCC----CCC
Q psy15151 250 ----QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL------DGF----SST 315 (431)
Q Consensus 250 ----~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~------~~~----~~~ 315 (431)
..|.|..++.+.+.+..+....| ||||||||.+.... ..+.+..|+++++.- |.+ ..-
T Consensus 392 ~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~-------~g~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 392 RGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDM-------RGDPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred ccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccccc-------CCCHHHHHHHHhccccEEEEecccccccccC
Confidence 23566666666666665544444 89999999985432 112357888888741 111 123
Q ss_pred CCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhc-----CCCCC---CCC---HHHHHHH-cCCC
Q psy15151 316 ADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK-----MNVSP---DVN---YEELSRS-TDDF 383 (431)
Q Consensus 316 ~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~-----~~~~~---~~~---~~~la~~-~~g~ 383 (431)
+++++|+|+|.. .++|+|++ |+ ..|.|++++.++..+|++.++.. ..+.. .++ +..|+.. +..+
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~ 539 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREA 539 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCccc
Confidence 789999999987 59999999 99 58999999999999999988731 11111 122 3444432 2333
Q ss_pred CHHHHHHHHHHHHHHHHH----hC---CCCcCHHHHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALR----RG---AAIVTHEDFMDAIME 418 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~----~~---~~~It~ed~~~Al~~ 418 (431)
-.+.++.++...+..++. .+ ...|+.+++.+.+..
T Consensus 540 GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 540 GVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGV 581 (784)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCC
Confidence 445555554444433332 22 246888888877754
No 75
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=3.4e-16 Score=156.82 Aligned_cols=209 Identities=17% Similarity=0.190 Sum_probs=144.8
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEE--------ee
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLK--------LA 244 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~--------i~ 244 (431)
.+.+|++|+|++..++.+...+... ..++.+||+||||||||++|+++|+.+.+.... ..
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3678999999999999998877632 134568999999999999999999987642110 01
Q ss_pred hhhhhHh----h---h---cchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 245 GPQLVQM----F---I---GDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 245 ~~~l~~~----~---~---g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
|.++... + - ......++.+.+.+.. +.+.|++|||+|.+ +...++.|+..+++
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~~a~naLLk~lEe-- 145 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SRHSFNALLKTLEE-- 145 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CHHHHHHHHHHHhc--
Confidence 1111110 0 0 0223445666655543 23469999999998 45556666666654
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHH
Q psy15151 311 GFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCK 389 (431)
Q Consensus 311 ~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~ 389 (431)
....+.+|++|+.++.+.+.+.+ |+ ..+.|++|+.++..+++...++..+.. ++..+..++..+.| +++++.
T Consensus 146 ---~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al 218 (363)
T PRK14961 146 ---PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDAL 218 (363)
T ss_pred ---CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 34567788888888889999988 87 689999999999999999888765533 22335567776654 667777
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q psy15151 390 AVCVEAGMIALRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 390 ~l~~~A~~~A~~~~~~~It~ed~~~Al~ 417 (431)
+++..+... +...|+.+++.+++.
T Consensus 219 ~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 219 NLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 777766533 456788888887654
No 76
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=7.3e-17 Score=167.40 Aligned_cols=206 Identities=17% Similarity=0.189 Sum_probs=142.0
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc------------e
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST------------F 240 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~------------~ 240 (431)
...+|++|+|++..++.|...+... ..++.+||+||+|||||++|+.+|+.+++. .
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 4678999999999999999887642 134678999999999999999999987751 0
Q ss_pred EEe-ehhhhhH----hhh------cchHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHH
Q psy15151 241 LKL-AGPQLVQ----MFI------GDGAKLVRDAFALAK----EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 305 (431)
Q Consensus 241 i~i-~~~~l~~----~~~------g~~~~~~~~lf~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 305 (431)
-.+ +|..+.. .++ ..+...++.+.+.+. .+.+.|+||||+|.| +...++.|+..
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-----------s~~AaNALLKT 147 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-----------TNHAFNAMLKT 147 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------CHHHHHHHHHh
Confidence 000 1111100 000 112344566665543 344679999999999 56666776666
Q ss_pred HHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCCC
Q psy15151 306 LNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDFN 384 (431)
Q Consensus 306 L~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~s 384 (431)
|++ ...++++|++||.+..+.+.+++ |+ ..+.|+.++.++..+.++..+...++..+ ..+..|+..+. .+
T Consensus 148 LEE-----PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~-Gs 218 (700)
T PRK12323 148 LEE-----PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ-GS 218 (700)
T ss_pred hcc-----CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC
Confidence 654 45678899999999999999999 88 68999999999999998887765544422 22455666655 45
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q psy15151 385 GAQCKAVCVEAGMIALRRGAAIVTHEDFMD 414 (431)
Q Consensus 385 ~~di~~l~~~A~~~A~~~~~~~It~ed~~~ 414 (431)
.++..+++.++... +...|+.+++.+
T Consensus 219 ~RdALsLLdQaia~----~~~~It~~~V~~ 244 (700)
T PRK12323 219 MRDALSLTDQAIAY----SAGNVSEEAVRG 244 (700)
T ss_pred HHHHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 67777777765542 223455554443
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.7e-16 Score=165.03 Aligned_cols=202 Identities=15% Similarity=0.199 Sum_probs=146.4
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST------------- 239 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~------------- 239 (431)
...+|++|+|++..++.|..++... ..++.+||+||+|||||++|+++|+.+++.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 3678999999999999999888632 234678999999999999999999987652
Q ss_pred -----------eEEeehhhhhHhhhcchHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 240 -----------FLKLAGPQLVQMFIGDGAKLVRDAFALAK----EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 240 -----------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
++.++++. ..+...++.+.+.+. .+.+.|+||||+|.| +...++.|+.
T Consensus 78 C~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~~A~NALLK 140 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------STHSFNALLK 140 (702)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CHHHHHHHHH
Confidence 22222211 112344566655443 234679999999998 6666777777
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~ 383 (431)
.|++ ....+.+|++|+.+..+.+.+++ |+ ..+.|.+++.++..+.++..+.+.++.- +..+..|+..+. .
T Consensus 141 tLEE-----PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~-G 211 (702)
T PRK14960 141 TLEE-----PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQ-G 211 (702)
T ss_pred HHhc-----CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 7765 34667888888888889889987 88 6899999999999999998887655542 223566776665 4
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
+.+++.+++..+... +...|+.+++...+
T Consensus 212 dLRdALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 212 SLRDALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 667787877766532 34568888776643
No 78
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.72 E-value=1.7e-16 Score=160.15 Aligned_cols=234 Identities=21% Similarity=0.256 Sum_probs=151.3
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhc--CC-CCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH-hhh
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNL--GI-QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ-MFI 253 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~--g~-~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~-~~~ 253 (431)
+.|+|++.+++.+..++..+.......... .. .+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyv 150 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYV 150 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcc
Confidence 359999999999987775432221100000 11 13478999999999999999999999999999999988754 577
Q ss_pred cchHHH-HHHHHHH----HHhCCCeEEEEccccccccCCCCC---CCcCcHHHHHHHHHHHHhhc-------C-CCCCCC
Q psy15151 254 GDGAKL-VRDAFAL----AKEKAPAIIFIDELDAIGTKRFDS---EKAGDREVQRTMLELLNQLD-------G-FSSTAD 317 (431)
Q Consensus 254 g~~~~~-~~~lf~~----a~~~~p~vl~iDEid~l~~~r~~~---~~~~~~~~~~~l~~lL~~~~-------~-~~~~~~ 317 (431)
|..... +..++.. .....++||||||||.+..++... ...+...+|+.|+++|+... + .....+
T Consensus 151 G~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~ 230 (412)
T PRK05342 151 GEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQE 230 (412)
T ss_pred cchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCC
Confidence 764333 3444432 223467899999999998763221 12234468999999997421 1 111235
Q ss_pred eEEEEEeCCCC----------------------------------------------------CCChhhhcCCCcceEEE
Q psy15151 318 IKVIAATNRVD----------------------------------------------------ILDPALLRSGRLDRKIE 345 (431)
Q Consensus 318 v~vI~ttn~~~----------------------------------------------------~l~~~l~r~gR~~~~i~ 345 (431)
.++|+|+|... .+.|+|+. |++.++.
T Consensus 231 ~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~ 308 (412)
T PRK05342 231 FIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVAT 308 (412)
T ss_pred eEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeee
Confidence 56677766400 14677777 9999999
Q ss_pred cCCCCHHHHHHHHHH----HHh-------cCCCC---CCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHhC------
Q psy15151 346 FPHPNEEARARIMQI----HSR-------KMNVS---PDVNYEELSRS--TDDFNGAQCKAVCVEAGMIALRRG------ 403 (431)
Q Consensus 346 ~~~p~~~~r~~Il~~----~l~-------~~~~~---~~~~~~~la~~--~~g~s~~di~~l~~~A~~~A~~~~------ 403 (431)
|.+++.++..+|+.. .++ ..++. .+..+..|++. ..++-.+.|+.++.........+-
T Consensus 309 f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~~~~ 388 (412)
T PRK05342 309 LEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSREDV 388 (412)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhccccCCC
Confidence 999999999999973 222 12222 12225667764 344556778877776666555431
Q ss_pred -CCCcCHHHHH
Q psy15151 404 -AAIVTHEDFM 413 (431)
Q Consensus 404 -~~~It~ed~~ 413 (431)
...|+.+.+.
T Consensus 389 ~~v~I~~~~v~ 399 (412)
T PRK05342 389 EKVVITKEVVE 399 (412)
T ss_pred ceEEECHHHhc
Confidence 1246666654
No 79
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.4e-16 Score=165.16 Aligned_cols=203 Identities=16% Similarity=0.164 Sum_probs=147.8
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST------------- 239 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~------------- 239 (431)
.+.+|++|+|++..++.+..++... ..++.+||+||+|||||++|+++|+.+++.
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 4678999999999999999888642 134678999999999999999999987652
Q ss_pred -----------eEEeehhhhhHhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 240 -----------FLKLAGPQLVQMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 240 -----------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
++.++.+. ..+...++.+.+.+.. +.+.|++|||+|.| +.+.++.|+.
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----------s~~a~naLLk 141 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----------SGHSFNALLK 141 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----------CHHHHHHHHH
Confidence 23333221 1233445666655432 34679999999999 5666777777
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~ 383 (431)
.|++ ....+.+|++|+.+..+.+.+++ |+ ..+.|.+++..+....++..++..++.- +..+..|+..+. .
T Consensus 142 ~LEe-----pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~-G 212 (509)
T PRK14958 142 TLEE-----PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAAN-G 212 (509)
T ss_pred HHhc-----cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 7765 34678888888889999989988 77 6788999999999988888887665542 223556776665 4
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~ 417 (431)
+.+++.+++..+... +...||.+++...+.
T Consensus 213 slR~al~lLdq~ia~----~~~~It~~~V~~~lg 242 (509)
T PRK14958 213 SVRDALSLLDQSIAY----GNGKVLIADVKTMLG 242 (509)
T ss_pred cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHC
Confidence 678888888776533 345688887776544
No 80
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.72 E-value=3.9e-16 Score=170.89 Aligned_cols=220 Identities=20% Similarity=0.260 Sum_probs=157.1
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i 243 (431)
.-.++.++|+++.+.++.+.+... ...+++|+||||||||++|+.+|... +..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~-------------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRR-------------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcC-------------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 567899999999999888766542 33678999999999999999999974 2457778
Q ss_pred ehhhhhH--hhhcchHHHHHHHHHHHHh-CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15151 244 AGPQLVQ--MFIGDGAKLVRDAFALAKE-KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKV 320 (431)
Q Consensus 244 ~~~~l~~--~~~g~~~~~~~~lf~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~v 320 (431)
+.+.+.. ++.|+.+..++.+++.+.. ..+.||||||||.+++.+...+ ..+..+.|...| ..+.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~---~~d~~n~Lkp~l-------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG---QGDAANLLKPAL-------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc---cccHHHHhhHHh-------hCCCeEE
Confidence 8877653 5788899999999998865 4678999999999987653221 122233444443 3578899
Q ss_pred EEEeCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHcCCCC-----H
Q psy15151 321 IAATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-----PDVNYEELSRSTDDFN-----G 385 (431)
Q Consensus 321 I~ttn~~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-----~~~~~~~la~~~~g~s-----~ 385 (431)
|+||+..+ ..|++|.| ||. .|.++.|+.+++..|++...+.+... .+..+..++..+.+|. +
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LP 396 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLP 396 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCc
Confidence 99998743 38999999 994 89999999999999987665443321 2333666777777663 3
Q ss_pred HHHHHHHHHHHHHHH-HhCCCCcCHHHHHHHHHHH
Q psy15151 386 AQCKAVCVEAGMIAL-RRGAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 386 ~di~~l~~~A~~~A~-~~~~~~It~ed~~~Al~~~ 419 (431)
...-.++.+|+.... ......+..+++.+.+..+
T Consensus 397 DKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~ 431 (852)
T TIGR03345 397 DKAVSLLDTACARVALSQNATPAALEDLRRRIAAL 431 (852)
T ss_pred cHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 444466777665443 3344555666666555444
No 81
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=3.8e-16 Score=164.35 Aligned_cols=202 Identities=17% Similarity=0.233 Sum_probs=144.7
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF------------ 240 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~------------ 240 (431)
...+|++|+|++..+..|...+... ..++.+||+||+|||||++|+.+|+.+++..
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 3678999999999999998877642 1345689999999999999999999876531
Q ss_pred ------------EEeehhhhhHhhhcchHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 241 ------------LKLAGPQLVQMFIGDGAKLVRDAFALAK----EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 241 ------------i~i~~~~l~~~~~g~~~~~~~~lf~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
+.++... ..+...++.+.+.+. .+.+.|+||||+|.| +...++.|+.
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~NALLK 141 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALLK 141 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHHHHHH
Confidence 2222110 012334555554443 345679999999999 6677888888
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~ 383 (431)
.|++ ...++++|++|+.+..+.+.+++ |+ ..+.|++++.++....+...+...++..+ ..+..|+..+. .
T Consensus 142 tLEE-----Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~-G 212 (647)
T PRK07994 142 TLEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAAD-G 212 (647)
T ss_pred HHHc-----CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 8876 45678888889999999999999 87 78999999999999999988765544322 23555666655 4
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
+.++..+++..+... +...|+.+++...+
T Consensus 213 s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 213 SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 557777777765532 23346666665544
No 82
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.71 E-value=4.7e-16 Score=163.94 Aligned_cols=222 Identities=17% Similarity=0.233 Sum_probs=148.7
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEeeh
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKLAG 245 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i~~ 245 (431)
.-+.|+|.+++++.|...+...+... .++..++|+|+||||||.+++.+..++ ...+++++|
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgs--------gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQS--------GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcC--------CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 33789999999999999887544321 233345799999999999999998754 245788998
Q ss_pred hhhhH----------hhhcc-------hHHHHHHHHHHHH--hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHH
Q psy15151 246 PQLVQ----------MFIGD-------GAKLVRDAFALAK--EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELL 306 (431)
Q Consensus 246 ~~l~~----------~~~g~-------~~~~~~~lf~~a~--~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL 306 (431)
..+.. .+.+. ....+..+|.... .....||+|||||.|..+ .+..|+.|+
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLF 893 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLF 893 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHH
Confidence 53211 11111 1234455665542 233569999999999532 246677777
Q ss_pred HhhcCCCCCCCeEEEEEeCC---CCCCChhhhcCCCcce-EEEcCCCCHHHHHHHHHHHHhcCC-CCCCCCHHHHHHHcC
Q psy15151 307 NQLDGFSSTADIKVIAATNR---VDILDPALLRSGRLDR-KIEFPHPNEEARARIMQIHSRKMN-VSPDVNYEELSRSTD 381 (431)
Q Consensus 307 ~~~~~~~~~~~v~vI~ttn~---~~~l~~~l~r~gR~~~-~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~~~~~la~~~~ 381 (431)
+.... ....+.||+++|. ++.++|.+.+ |+.. .+.|++++.+++.+||+.++.... .-.+..+..+|....
T Consensus 894 R~~~~--s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 894 DWPTK--INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred HHhhc--cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 76432 3467889999986 5567788887 6643 588999999999999999987542 111222555665444
Q ss_pred CCC--HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q psy15151 382 DFN--GAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKK 423 (431)
Q Consensus 382 g~s--~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~ 423 (431)
..+ .|..-.+|+.|+.. .+...|+.+|+.+|+..+....
T Consensus 970 q~SGDARKALDILRrAgEi---kegskVT~eHVrkAleeiE~sr 1010 (1164)
T PTZ00112 970 NVSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFDSP 1010 (1164)
T ss_pred hcCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHhhh
Confidence 332 23334556676654 3455899999999998875543
No 83
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=7.6e-16 Score=158.84 Aligned_cols=213 Identities=16% Similarity=0.227 Sum_probs=151.1
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceE-----------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFL----------- 241 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i----------- 241 (431)
.+.+|++++|++..++.+..++... ..+.++||+||||||||++|+++|+.+++...
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 4678999999999999998876531 23578999999999999999999998765211
Q ss_pred -EeehhhhhHhh----------hcchHHHHHHHHHHHHhC----CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHH
Q psy15151 242 -KLAGPQLVQMF----------IGDGAKLVRDAFALAKEK----APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELL 306 (431)
Q Consensus 242 -~i~~~~l~~~~----------~g~~~~~~~~lf~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL 306 (431)
.-+|..+.... ...+...++.+++.+... .+.|++|||+|.+ +...++.|+..+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L-----------s~~a~naLLk~L 152 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML-----------SKGAFNALLKTL 152 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc-----------CHHHHHHHHHHH
Confidence 11111111110 012345567777776543 3579999999998 445566666665
Q ss_pred HhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCCCH
Q psy15151 307 NQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDFNG 385 (431)
Q Consensus 307 ~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~s~ 385 (431)
++ ....+++|++|+.++.+.+.+++ |+ ..+.|++++.++...+++..++..+..-+ ..+..|+..+.| +.
T Consensus 153 Ee-----pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-sl 223 (507)
T PRK06645 153 EE-----PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SA 223 (507)
T ss_pred hh-----cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 53 45677888888888899999998 88 57999999999999999999886655422 235667777664 77
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q psy15151 386 AQCKAVCVEAGMIALRRGAAIVTHEDFMDAIME 418 (431)
Q Consensus 386 ~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~ 418 (431)
+++.+++..+...+... ...||.+++...+..
T Consensus 224 R~al~~Ldkai~~~~~~-~~~It~~~V~~llg~ 255 (507)
T PRK06645 224 RDAVSILDQAASMSAKS-DNIISPQVINQMLGL 255 (507)
T ss_pred HHHHHHHHHHHHhhccC-CCCcCHHHHHHHHCC
Confidence 88888888877654211 235888887765543
No 84
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=3.5e-16 Score=167.13 Aligned_cols=192 Identities=15% Similarity=0.164 Sum_probs=136.8
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceE-------Ee-e
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFL-------KL-A 244 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i-------~i-~ 244 (431)
...+|++|+|++..+..|..++... ..++.+||+||||||||++|+++|+.+++... .+ .
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 3678999999999999998877632 13456799999999999999999998776311 00 1
Q ss_pred hhhhhHh-------hhc---chHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 245 GPQLVQM-------FIG---DGAKLVRDAFALAK----EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 245 ~~~l~~~-------~~g---~~~~~~~~lf~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
|-.+... +-+ .+...++.+.+.+. .+...|+||||+|.| +.+.++.|+..|++
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLKtLEE-- 145 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLKTLEE-- 145 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHHHHhc--
Confidence 1111110 001 12334565555443 244679999999999 67778888887775
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCCCHHHHH
Q psy15151 311 GFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDFNGAQCK 389 (431)
Q Consensus 311 ~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~s~~di~ 389 (431)
...++++|++|+.+..+.+.+++ |+ .++.|++++.++....++..+...++.-+ ..+..|+..+. .+.+++.
T Consensus 146 ---PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~-Gd~R~AL 218 (944)
T PRK14949 146 ---PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAAN-GSMRDAL 218 (944)
T ss_pred ---cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHH
Confidence 45678888889889999999999 87 68999999999999999988765443321 22556666655 4567788
Q ss_pred HHHHHHH
Q psy15151 390 AVCVEAG 396 (431)
Q Consensus 390 ~l~~~A~ 396 (431)
++|..+.
T Consensus 219 nLLdQal 225 (944)
T PRK14949 219 SLTDQAI 225 (944)
T ss_pred HHHHHHH
Confidence 8887766
No 85
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.71 E-value=1.4e-15 Score=150.75 Aligned_cols=208 Identities=21% Similarity=0.282 Sum_probs=138.9
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC-----CceEEeehhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK-----STFLKLAGPQ 247 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~-----~~~i~i~~~~ 247 (431)
.+.+|++++|++..++.+..++... ...+++|+||||||||++|+++++... .+++.+++++
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 4677999999999999998877631 123699999999999999999999863 3577888876
Q ss_pred hhHhh-------------hcc-------hHHHHHHHHHHHHh-----CCCeEEEEccccccccCCCCCCCcCcHHHHHHH
Q psy15151 248 LVQMF-------------IGD-------GAKLVRDAFALAKE-----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTM 302 (431)
Q Consensus 248 l~~~~-------------~g~-------~~~~~~~lf~~a~~-----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 302 (431)
+.... .+. ....++.+...... ..+.+|+|||+|.+ +...+..|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-----------~~~~~~~L 145 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-----------REDAQQAL 145 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-----------CHHHHHHH
Confidence 54221 111 01222333222222 23469999999998 44556667
Q ss_pred HHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcC
Q psy15151 303 LELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTD 381 (431)
Q Consensus 303 ~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~ 381 (431)
..+++.. .....+|++++.+..+.+.+.+ |+ ..+.|++|+.++...+++..+...++. ++..+..++..+.
T Consensus 146 ~~~le~~-----~~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~ 217 (337)
T PRK12402 146 RRIMEQY-----SRTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG 217 (337)
T ss_pred HHHHHhc-----cCCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7776652 2334566777767777788887 76 578999999999999999888766554 2333666777653
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q psy15151 382 DFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIME 418 (431)
Q Consensus 382 g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~ 418 (431)
.+ ++.++......+. ....||.+++.+++..
T Consensus 218 -gd---lr~l~~~l~~~~~--~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 218 -GD---LRKAILTLQTAAL--AAGEITMEAAYEALGD 248 (337)
T ss_pred -CC---HHHHHHHHHHHHH--cCCCCCHHHHHHHhCC
Confidence 34 4444444433332 2336898888876653
No 86
>PLN03025 replication factor C subunit; Provisional
Probab=99.70 E-value=5.8e-16 Score=152.59 Aligned_cols=199 Identities=18% Similarity=0.216 Sum_probs=133.5
Q ss_pred CCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC-----CceEEeehh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK-----STFLKLAGP 246 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~-----~~~i~i~~~ 246 (431)
..+.++++++|+++.+..+...+... ...++||+||||||||++|+++|+++. ..++.++.+
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s 73 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS 73 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc
Confidence 34678999999999999888765531 224699999999999999999999863 235566655
Q ss_pred hhhHhhhcchHHHHHHHHHHH-H------hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15151 247 QLVQMFIGDGAKLVRDAFALA-K------EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIK 319 (431)
Q Consensus 247 ~l~~~~~g~~~~~~~~lf~~a-~------~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~ 319 (431)
+.. +...++...... . ...+.|++|||+|.+ ....++.|...++.. ...+.
T Consensus 74 d~~------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-----------t~~aq~aL~~~lE~~-----~~~t~ 131 (319)
T PLN03025 74 DDR------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-----------TSGAQQALRRTMEIY-----SNTTR 131 (319)
T ss_pred ccc------cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----------CHHHHHHHHHHHhcc-----cCCce
Confidence 421 112233332211 1 134679999999998 556677887777542 23455
Q ss_pred EEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy15151 320 VIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMI 398 (431)
Q Consensus 320 vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~ 398 (431)
+|+++|.+..+.+++++ |+ ..+.|++|+.++....+...++..++. ++..+..++..+.| ..+.+-+.++ ..
T Consensus 132 ~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq---~~ 204 (319)
T PLN03025 132 FALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ---AT 204 (319)
T ss_pred EEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH---HH
Confidence 78889988899999998 77 579999999999999999887765543 22336666665543 3344444443 21
Q ss_pred HHHhCCCCcCHHHHHH
Q psy15151 399 ALRRGAAIVTHEDFMD 414 (431)
Q Consensus 399 A~~~~~~~It~ed~~~ 414 (431)
+ .+...|+.+++.+
T Consensus 205 ~--~~~~~i~~~~v~~ 218 (319)
T PLN03025 205 H--SGFGFVNQENVFK 218 (319)
T ss_pred H--hcCCCCCHHHHHH
Confidence 1 1234577666654
No 87
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.70 E-value=6.7e-16 Score=159.11 Aligned_cols=191 Identities=17% Similarity=0.245 Sum_probs=133.8
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc-----CCceEEeehhhhhHhhhcchHHH-HHHHHHHHHhCCCeEEEEcccccccc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT-----KSTFLKLAGPQLVQMFIGDGAKL-VRDAFALAKEKAPAIIFIDELDAIGT 285 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~-----~~~~i~i~~~~l~~~~~g~~~~~-~~~lf~~a~~~~p~vl~iDEid~l~~ 285 (431)
..+++||||||||||+|+++++++. +..++++++.++...+....... ...+.+..+ .+.+|+|||+|.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAG 225 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcC
Confidence 3579999999999999999999975 55688999988876654332211 122222222 467999999999854
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHH
Q psy15151 286 KRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI---LDPALLRSGRLD--RKIEFPHPNEEARARIMQI 360 (431)
Q Consensus 286 ~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~r~gR~~--~~i~~~~p~~~~r~~Il~~ 360 (431)
++ ..+..++.+++.+.. .+..+||++...|.. +++.+.+ ||. ..+.+++|+.++|..|++.
T Consensus 226 ~~---------~~~~~l~~~~n~l~~---~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 226 KE---------RTQEEFFHTFNALHE---AGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CH---------HHHHHHHHHHHHHHH---CCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHH
Confidence 32 345566777766532 223344444444444 6688888 885 5899999999999999999
Q ss_pred HHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q psy15151 361 HSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 361 ~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~ 420 (431)
.+...++. ++..++.|+..+. -+.+++..++......|...++ .||.+.+.+++..+.
T Consensus 292 ~~~~~~~~l~~e~l~~ia~~~~-~~~R~l~~~l~~l~~~~~~~~~-~it~~~~~~~l~~~~ 350 (450)
T PRK00149 292 KAEEEGIDLPDEVLEFIAKNIT-SNVRELEGALNRLIAYASLTGK-PITLELAKEALKDLL 350 (450)
T ss_pred HHHHcCCCCCHHHHHHHHcCcC-CCHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHhh
Confidence 88764433 2222666777665 4668888888888777766654 489999999998864
No 88
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.4e-15 Score=155.64 Aligned_cols=202 Identities=15% Similarity=0.246 Sum_probs=148.7
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC--------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS-------------- 238 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~-------------- 238 (431)
.+.+|++++|++..++.+..++... ..++++||+||+|+|||++|+.+|..+++
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 3678999999999999998776532 24578999999999999999999986543
Q ss_pred ----------ceEEeehhhhhHhhhcchHHHHHHHHHHHHhC----CCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 239 ----------TFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK----APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 239 ----------~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
.++.++++. ..+...++.+.+.+... .+.|++|||+|.| +.+.++.|+.
T Consensus 76 C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A~NaLLK 138 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSAFNALLK 138 (491)
T ss_pred HHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHHHHHHHH
Confidence 223333321 12345577777666543 3579999999998 5556666766
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~ 383 (431)
.|++ ....+.+|++|+.++.+.+.+++ |+ ..+.|.+++.++....+...+...+.. ++..+..|+..+. .
T Consensus 139 ~LEe-----Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~-G 209 (491)
T PRK14964 139 TLEE-----PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSS-G 209 (491)
T ss_pred HHhC-----CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 6654 34678888888888899999998 77 679999999999999999888765544 2233566777665 4
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
+.+++.+++..+...+ + ..||.+++.+.+
T Consensus 210 slR~alslLdqli~y~---~-~~It~e~V~~ll 238 (491)
T PRK14964 210 SMRNALFLLEQAAIYS---N-NKISEKSVRDLL 238 (491)
T ss_pred CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHH
Confidence 7788888888776543 2 468888887754
No 89
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.8e-15 Score=149.23 Aligned_cols=221 Identities=20% Similarity=0.347 Sum_probs=157.4
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-----eEEeehhhhhHhh
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST-----FLKLAGPQLVQMF 252 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~-----~i~i~~~~l~~~~ 252 (431)
+.+.+.++++.++...+...+... .|.++++|||||||||.+++.+++++... ++++||..+.+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~---------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGE---------RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCC---------CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 449999999999998876544433 55679999999999999999999976543 8999996543221
Q ss_pred ---------------hcchH-HHHHHHHHHHHh-CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCC
Q psy15151 253 ---------------IGDGA-KLVRDAFALAKE-KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSST 315 (431)
Q Consensus 253 ---------------~g~~~-~~~~~lf~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~ 315 (431)
.|.+. .....+++.... ....||++||+|.|..+. . ..|++++...... .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-------~----~~LY~L~r~~~~~--~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD-------G----EVLYSLLRAPGEN--K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-------c----hHHHHHHhhcccc--c
Confidence 12221 222334444433 456799999999997653 1 6777777765543 5
Q ss_pred CCeEEEEEeCCC---CCCChhhhcCCCcc-eEEEcCCCCHHHHHHHHHHHHhcCCCCCCCC---HHHHHH---HcCCCCH
Q psy15151 316 ADIKVIAATNRV---DILDPALLRSGRLD-RKIEFPHPNEEARARIMQIHSRKMNVSPDVN---YEELSR---STDDFNG 385 (431)
Q Consensus 316 ~~v~vI~ttn~~---~~l~~~l~r~gR~~-~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~---~~~la~---~~~g~s~ 385 (431)
.++.+|+.+|.. +.++|.+.+ ++. ..|.||+++.+|...|+..+.+........+ +..++. ...| ..
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DA 231 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DA 231 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cH
Confidence 678899999975 458888887 443 4699999999999999998876432222221 333333 2333 44
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q psy15151 386 AQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKK 423 (431)
Q Consensus 386 ~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~ 423 (431)
+-.-.+|+.|+..|.+++...++.+++..|..++....
T Consensus 232 R~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~ 269 (366)
T COG1474 232 RKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDV 269 (366)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHH
Confidence 55568899999999999999999999999977665543
No 90
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.69 E-value=1.1e-15 Score=155.61 Aligned_cols=191 Identities=17% Similarity=0.247 Sum_probs=132.0
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc-----CCceEEeehhhhhHhhhcchHH-HHHHHHHHHHhCCCeEEEEcccccccc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT-----KSTFLKLAGPQLVQMFIGDGAK-LVRDAFALAKEKAPAIIFIDELDAIGT 285 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~-----~~~~i~i~~~~l~~~~~g~~~~-~~~~lf~~a~~~~p~vl~iDEid~l~~ 285 (431)
..+++||||||+|||+|++++++++ +..++++++.++...+...... ......+..+ .+.+|+|||+|.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3579999999999999999999875 5678899998877655432211 1112222222 256999999999854
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHH
Q psy15151 286 KRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI---LDPALLRSGRLD--RKIEFPHPNEEARARIMQI 360 (431)
Q Consensus 286 ~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~r~gR~~--~~i~~~~p~~~~r~~Il~~ 360 (431)
+. ..+..++.+++.+.. .+..+||+++..|.. +++.+.+ ||. ..+.|++|+.++|..|++.
T Consensus 214 ~~---------~~~~~l~~~~n~~~~---~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 214 KE---------RTQEEFFHTFNALHE---NGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CH---------HHHHHHHHHHHHHHH---CCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHH
Confidence 32 345667777766532 223344444444443 5678888 885 4899999999999999999
Q ss_pred HHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q psy15151 361 HSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 361 ~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~ 420 (431)
.+...++. ++..++.|+.... .+.+++..++......|...+ ..||.+.+.+++....
T Consensus 280 ~~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 280 KAEEEGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYASLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred HHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhc
Confidence 98765544 2233667777665 467889988888877776555 4488888888887764
No 91
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.3e-15 Score=159.75 Aligned_cols=211 Identities=18% Similarity=0.193 Sum_probs=149.1
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceE--Eee------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFL--KLA------ 244 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i--~i~------ 244 (431)
...+|++|+|++..++.|..++... ..++.+||+||+|||||++|+++|+.+++.-. ...
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 4678999999999999999887742 24567999999999999999999998765311 000
Q ss_pred hhhhhHh----------hhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 245 GPQLVQM----------FIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 245 ~~~l~~~----------~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
|..+... ..+.+...++.+++.+.. ..+.|+||||+|.| +...++.|+..|++
T Consensus 79 Cr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~NALLKtLEE-- 145 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAFNAMLKTLEE-- 145 (709)
T ss_pred HHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHHHHHHHHHHh--
Confidence 1111000 011233456666665432 34579999999998 55556667777665
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCCCHHHHH
Q psy15151 311 GFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDFNGAQCK 389 (431)
Q Consensus 311 ~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s~~di~ 389 (431)
....+.+|++||.+..+.+.+++ |+ ..+.|++++.++....+...+...++.- +..+..|+..+. .+.+++.
T Consensus 146 ---Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-GslRdAl 218 (709)
T PRK08691 146 ---PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSMRDAL 218 (709)
T ss_pred ---CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHHH
Confidence 34667888999999999999987 88 6788999999999999998888766542 223566776664 5678888
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q psy15151 390 AVCVEAGMIALRRGAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 390 ~l~~~A~~~A~~~~~~~It~ed~~~Al~~~ 419 (431)
+++..+... +...|+.+++...+...
T Consensus 219 nLLDqaia~----g~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 219 SLLDQAIAL----GSGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHHccc
Confidence 888776654 34467888777665543
No 92
>PRK06893 DNA replication initiation factor; Validated
Probab=99.69 E-value=1.5e-15 Score=142.64 Aligned_cols=213 Identities=12% Similarity=0.161 Sum_probs=134.5
Q ss_pred cccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeeh
Q psy15151 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAG 245 (431)
Q Consensus 169 ~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~ 245 (431)
+...+..+|++++|.+... +...+.. .+.. .....++||||||||||+|++++|++. +....+++.
T Consensus 7 ~~~~~~~~fd~f~~~~~~~--~~~~~~~------~~~~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNLL--LLDSLRK------NFID---LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChHH--HHHHHHH------Hhhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 3445678899999776432 2222221 1111 122457999999999999999999874 334455554
Q ss_pred hhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe-
Q psy15151 246 PQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT- 324 (431)
Q Consensus 246 ~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt- 324 (431)
..... ....+++... .+.+|+|||++.+.+. ...+..+..+++.... .+..++|.|+
T Consensus 76 ~~~~~--------~~~~~~~~~~--~~dlLilDDi~~~~~~---------~~~~~~l~~l~n~~~~---~~~~illits~ 133 (229)
T PRK06893 76 SKSQY--------FSPAVLENLE--QQDLVCLDDLQAVIGN---------EEWELAIFDLFNRIKE---QGKTLLLISAD 133 (229)
T ss_pred HHhhh--------hhHHHHhhcc--cCCEEEEeChhhhcCC---------hHHHHHHHHHHHHHHH---cCCcEEEEeCC
Confidence 32211 1112233332 3469999999998432 3445667787876532 2333444444
Q ss_pred CCCCCCC---hhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCC--CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 325 NRVDILD---PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNV--SPDVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 325 n~~~~l~---~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~--~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
..|..++ |.+.++.+++..+.+++|+.+++.+|++..+...++ ++++ ++.|+.+.. -+.+.+..++......+
T Consensus 134 ~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v-~~~L~~~~~-~d~r~l~~~l~~l~~~~ 211 (229)
T PRK06893 134 CSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEV-ANFLLKRLD-RDMHTLFDALDLLDKAS 211 (229)
T ss_pred CChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 4566554 789885555679999999999999999987764443 3333 667777666 45577777777665444
Q ss_pred HHhCCCCcCHHHHHHHHH
Q psy15151 400 LRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 400 ~~~~~~~It~ed~~~Al~ 417 (431)
..+++ .||...+.+++.
T Consensus 212 ~~~~~-~it~~~v~~~L~ 228 (229)
T PRK06893 212 LQAQR-KLTIPFVKEILG 228 (229)
T ss_pred HhcCC-CCCHHHHHHHhc
Confidence 44444 699998888763
No 93
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.68 E-value=7.5e-16 Score=154.72 Aligned_cols=225 Identities=20% Similarity=0.267 Sum_probs=148.0
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHH----HhcCC-CCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKF----VNLGI-QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~----~~~g~-~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
.-+.|+|++++++.+..++.......... ...++ ....++||+||||||||++|+++|..++.+|..++++.+..
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~ 154 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTE 154 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccc
Confidence 44568999999999988774322221000 00011 12368999999999999999999999999999999887653
Q ss_pred -hhhcch-HHHHHHHHHHH----HhCCCeEEEEccccccccCCCCCC---CcCcHHHHHHHHHHHHhhc--------CCC
Q psy15151 251 -MFIGDG-AKLVRDAFALA----KEKAPAIIFIDELDAIGTKRFDSE---KAGDREVQRTMLELLNQLD--------GFS 313 (431)
Q Consensus 251 -~~~g~~-~~~~~~lf~~a----~~~~p~vl~iDEid~l~~~r~~~~---~~~~~~~~~~l~~lL~~~~--------~~~ 313 (431)
.|+|.. ...+..++..+ ....++||||||||.+..++...+ ......+|+.|+++|+... ...
T Consensus 155 ~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~ 234 (413)
T TIGR00382 155 AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKH 234 (413)
T ss_pred cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccc
Confidence 466764 33344443321 234567999999999987542211 2223478999999995321 011
Q ss_pred CCCCeEEEEEeCCC---------------------------C-----------------------CCChhhhcCCCcceE
Q psy15151 314 STADIKVIAATNRV---------------------------D-----------------------ILDPALLRSGRLDRK 343 (431)
Q Consensus 314 ~~~~v~vI~ttn~~---------------------------~-----------------------~l~~~l~r~gR~~~~ 343 (431)
...+.++|+|+|.. + .+.|+|+. |++.+
T Consensus 235 ~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~I 312 (413)
T TIGR00382 235 PYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVI 312 (413)
T ss_pred cCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeE
Confidence 23567888888860 0 14577777 99999
Q ss_pred EEcCCCCHHHHHHHHHHH----Hhc----C---CCC---CCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Q psy15151 344 IEFPHPNEEARARIMQIH----SRK----M---NVS---PDVNYEELSRS--TDDFNGAQCKAVCVEAGMIALRR 402 (431)
Q Consensus 344 i~~~~p~~~~r~~Il~~~----l~~----~---~~~---~~~~~~~la~~--~~g~s~~di~~l~~~A~~~A~~~ 402 (431)
+.|.+++.++..+|+... +++ + ++. .+..++.|+.. ...+-++.|+.+++.....+..+
T Consensus 313 v~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 313 ATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 999999999999998752 221 1 221 12225667765 34456688888888777766554
No 94
>KOG2028|consensus
Probab=99.68 E-value=4.5e-16 Score=148.78 Aligned_cols=204 Identities=27% Similarity=0.389 Sum_probs=139.2
Q ss_pred CCCcccccCchHHHHH---HHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc---eEEeehhh
Q psy15151 174 TEQYSDIGGLDKQIQE---LIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST---FLKLAGPQ 247 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~---l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~---~i~i~~~~ 247 (431)
..++++.+|+++.+.+ |+..++. ....+++||||||||||+||+.|+.....+ |+.++..
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt- 199 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT- 199 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc-
Confidence 4567777777766544 2222221 133579999999999999999999987766 6665543
Q ss_pred hhHhhhcchHHHHHHHHHHHHh-----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q psy15151 248 LVQMFIGDGAKLVRDAFALAKE-----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIA 322 (431)
Q Consensus 248 l~~~~~g~~~~~~~~lf~~a~~-----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ 322 (431)
......++.+|+.+.. ....|||||||+++ +...|.+++-.+ .++.+++|+
T Consensus 200 ------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----------NksQQD~fLP~V-------E~G~I~lIG 255 (554)
T KOG2028|consen 200 ------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----------NKSQQDTFLPHV-------ENGDITLIG 255 (554)
T ss_pred ------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----------hhhhhhccccee-------ccCceEEEe
Confidence 2345667888887755 45689999999998 444556665544 347788998
Q ss_pred Ee--CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCC--------CCC------CCCHHHHHHHcCCCCHH
Q psy15151 323 AT--NRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMN--------VSP------DVNYEELSRSTDDFNGA 386 (431)
Q Consensus 323 tt--n~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~--------~~~------~~~~~~la~~~~g~s~~ 386 (431)
+| |..-.+..++++ |+ +++.+..++.+....|+.....-++ +.. +.-++.++..+.|-..+
T Consensus 256 ATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred cccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 77 556678899999 77 5688899999999999887443111 111 12266778878777666
Q ss_pred HHHHHHHHHHHHHHHhC---CCCcCHHHHHHHHHH
Q psy15151 387 QCKAVCVEAGMIALRRG---AAIVTHEDFMDAIME 418 (431)
Q Consensus 387 di~~l~~~A~~~A~~~~---~~~It~ed~~~Al~~ 418 (431)
-+..+=-.+.+.+.+.+ +..++.+|+.+++..
T Consensus 333 aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 333 ALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 55554333344454544 457899999988865
No 95
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.68 E-value=1e-15 Score=150.57 Aligned_cols=226 Identities=22% Similarity=0.286 Sum_probs=152.2
Q ss_pred cCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC-------CceEEe
Q psy15151 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK-------STFLKL 243 (431)
Q Consensus 171 ~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~-------~~~i~i 243 (431)
..+...|.+|+|+++.+..+...+..| ...++||.||+|||||++||+++..+. .+|...
T Consensus 10 ~~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~ 76 (350)
T CHL00081 10 ERPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSH 76 (350)
T ss_pred cCCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCC
Confidence 355778999999999999998777653 346899999999999999999988542 233200
Q ss_pred -e-----hhhhhHhh-------------------hcchHHHH------H------------HHHHHHHhCCCeEEEEccc
Q psy15151 244 -A-----GPQLVQMF-------------------IGDGAKLV------R------------DAFALAKEKAPAIIFIDEL 280 (431)
Q Consensus 244 -~-----~~~l~~~~-------------------~g~~~~~~------~------------~lf~~a~~~~p~vl~iDEi 280 (431)
+ ++.+.... .|.++..+ . +++..+ ..++||+|||
T Consensus 77 p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A---~~GiL~lDEI 153 (350)
T CHL00081 77 PSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA---NRGILYVDEV 153 (350)
T ss_pred CCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeec---CCCEEEecCh
Confidence 0 00000000 11121111 0 111122 1359999999
Q ss_pred cccccCCCCCCCcCcHHHHHHHHHHHHhh------cCC--CCCCCeEEEEEeCCCC-CCChhhhcCCCcceEEEcCCCC-
Q psy15151 281 DAIGTKRFDSEKAGDREVQRTMLELLNQL------DGF--SSTADIKVIAATNRVD-ILDPALLRSGRLDRKIEFPHPN- 350 (431)
Q Consensus 281 d~l~~~r~~~~~~~~~~~~~~l~~lL~~~------~~~--~~~~~v~vI~ttn~~~-~l~~~l~r~gR~~~~i~~~~p~- 350 (431)
+.+ ++..|..|++.++.. ++. ....++++|+|.|..+ .+.++++. ||...+.+..|+
T Consensus 154 nrL-----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~ 220 (350)
T CHL00081 154 NLL-----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKD 220 (350)
T ss_pred HhC-----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCC
Confidence 998 888999999988762 121 1245788888888765 59999999 999999999997
Q ss_pred HHHHHHHHHHHHhcC--CCC-----------------------CCCC-----HHH---HHHHcCCCCHHHHHHHHHHHHH
Q psy15151 351 EEARARIMQIHSRKM--NVS-----------------------PDVN-----YEE---LSRSTDDFNGAQCKAVCVEAGM 397 (431)
Q Consensus 351 ~~~r~~Il~~~l~~~--~~~-----------------------~~~~-----~~~---la~~~~g~s~~di~~l~~~A~~ 397 (431)
.+.+.+|++...... ... ..+. ... ++..+.--+.+---.+++.|..
T Consensus 221 ~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA 300 (350)
T CHL00081 221 PELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKA 300 (350)
T ss_pred hHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHH
Confidence 589999998753211 000 0011 122 2222222244555567888889
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHHhhhc
Q psy15151 398 IALRRGAAIVTHEDFMDAIMEVQAKKKA 425 (431)
Q Consensus 398 ~A~~~~~~~It~ed~~~Al~~~~~~~~~ 425 (431)
.|..+++..|+.+|+..+..-+..++..
T Consensus 301 ~Aal~GR~~V~pdDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 301 LAAFEGRTEVTPKDIFKVITLCLRHRLR 328 (350)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999998764
No 96
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.68 E-value=7.2e-16 Score=151.36 Aligned_cols=221 Identities=20% Similarity=0.306 Sum_probs=145.4
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC-------C--ceEEee
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK-------S--TFLKLA 244 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~-------~--~~i~i~ 244 (431)
...|.+|+|++..++.+.-++..+ ...++||+||||||||++|++++.-+. . .+.++.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 567999999999999887544321 226899999999999999999999763 2 111111
Q ss_pred hh---------hhhH---------------hhhcc---------hHH-HHHHHHHHHHhCCCeEEEEccccccccCCCCC
Q psy15151 245 GP---------QLVQ---------------MFIGD---------GAK-LVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 290 (431)
Q Consensus 245 ~~---------~l~~---------------~~~g~---------~~~-~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~ 290 (431)
+. .+.. ..+|. +.. ...+.+..+. .++||+|||+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~---~GiL~lDEInrl------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARAN---RGYLYIDEVNLL------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcC---CCeEEecChHhC-------
Confidence 10 0000 01111 000 0011111121 259999999998
Q ss_pred CCcCcHHHHHHHHHHHHhhc------CC--CCCCCeEEEEEeCCCC-CCChhhhcCCCcceEEEcCCCCH-HHHHHHHHH
Q psy15151 291 EKAGDREVQRTMLELLNQLD------GF--SSTADIKVIAATNRVD-ILDPALLRSGRLDRKIEFPHPNE-EARARIMQI 360 (431)
Q Consensus 291 ~~~~~~~~~~~l~~lL~~~~------~~--~~~~~v~vI~ttn~~~-~l~~~l~r~gR~~~~i~~~~p~~-~~r~~Il~~ 360 (431)
++..+..|++.+++.. +. ....++++|+|+|..+ .++++++. ||...+.+++|.. +++.+|++.
T Consensus 141 ----~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 141 ----EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred ----CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 8889999999987632 21 1345788999999755 58889999 9999999998866 889999987
Q ss_pred HHhcCC----C------CC---------------CCC-----HHHH---HHHcC-CCCHHHHHHHHHHHHHHHHHhCCCC
Q psy15151 361 HSRKMN----V------SP---------------DVN-----YEEL---SRSTD-DFNGAQCKAVCVEAGMIALRRGAAI 406 (431)
Q Consensus 361 ~l~~~~----~------~~---------------~~~-----~~~l---a~~~~-g~s~~di~~l~~~A~~~A~~~~~~~ 406 (431)
....-. . .. .+. ..++ +..+. .-.-+++. +++.|...|..+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~ 293 (334)
T PRK13407 215 RDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEA 293 (334)
T ss_pred hhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCe
Confidence 532110 0 00 000 1222 22221 12335555 8899999999999999
Q ss_pred cCHHHHHHHHHHHHHhhh
Q psy15151 407 VTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 407 It~ed~~~Al~~~~~~~~ 424 (431)
|+.+|+..+..-+..++.
T Consensus 294 V~~~Di~~~~~~vl~hR~ 311 (334)
T PRK13407 294 VGRSHLRSVATMALSHRL 311 (334)
T ss_pred eCHHHHHHHHHHhhhhhc
Confidence 999999999988887765
No 97
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.68 E-value=1.2e-15 Score=146.23 Aligned_cols=192 Identities=24% Similarity=0.327 Sum_probs=129.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhh------hhHhhhcchHHHH---------------------HHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQ------LVQMFIGDGAKLV---------------------RDA 263 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~------l~~~~~g~~~~~~---------------------~~l 263 (431)
.+.++||+||||||||++|+++|...+.+++.++|.. ++..+.|.....+ +.+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3478999999999999999999999999999998753 2222222111110 112
Q ss_pred HHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc----CCC-------CCCCeEEEEEeCCCC----
Q psy15151 264 FALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD----GFS-------STADIKVIAATNRVD---- 328 (431)
Q Consensus 264 f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~----~~~-------~~~~v~vI~ttn~~~---- 328 (431)
+..+.. ..+|+||||+.+ +++++..|+.+|++.. +.. ...++.||+|+|...
T Consensus 100 ~~A~~~--g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TLAVRE--GFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHHc--CCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 222222 359999999997 8899999999997621 111 224778999999763
Q ss_pred -CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHH---Hc---C-CCCHHHHHHHHHHHHHHHH
Q psy15151 329 -ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSR---ST---D-DFNGAQCKAVCVEAGMIAL 400 (431)
Q Consensus 329 -~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~---~~---~-g~s~~di~~l~~~A~~~A~ 400 (431)
.+++++.+ || ..+.++.|+.++..+|+..++ +.... ..+.+.. .+ . ....+ ++..+.-+...+.
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~---~~~~~-~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~ 238 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT---DVAED-SAATIVRLVREFRASGDEITSG-LRASLMIAEVATQ 238 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh---CCCHH-HHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHH
Confidence 46889999 98 689999999999999999875 22211 1222221 11 1 11111 4444444444445
Q ss_pred HhCCCCcCHHHHHHHHHHHHHhh
Q psy15151 401 RRGAAIVTHEDFMDAIMEVQAKK 423 (431)
Q Consensus 401 ~~~~~~It~ed~~~Al~~~~~~~ 423 (431)
...+..++.+||.+.+-.+..++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~ 261 (262)
T TIGR02640 239 QDIPVDVDDEDFVDLCIDILASR 261 (262)
T ss_pred cCCCCCCCcHHHHHHHHHHhccC
Confidence 55688899999999999887664
No 98
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=2.9e-15 Score=157.32 Aligned_cols=201 Identities=19% Similarity=0.267 Sum_probs=144.9
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST------------- 239 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~------------- 239 (431)
.+.+|++++|++..++.+..++... ..++.+||+||+|||||++|+.+|..+.+.
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 3678999999999999999887742 145678999999999999999999986532
Q ss_pred -----------eEEeehhhhhHhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 240 -----------FLKLAGPQLVQMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 240 -----------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
++.++++ .+.+...++.+.+.+.. ..+.|++|||+|.| ....++.|+.
T Consensus 79 C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~~a~naLLK 141 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------STGAFNALLK 141 (559)
T ss_pred HHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHHHHH
Confidence 2222221 11334556777776653 33679999999998 4455566666
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~ 383 (431)
.|++ .+..+++|++|+.++.+.+.+++ |+ ..+.|++|+.++....++..+++.++.-+ ..+..++..+.|
T Consensus 142 tLEe-----pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G- 212 (559)
T PRK05563 142 TLEE-----PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG- 212 (559)
T ss_pred HhcC-----CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 5543 35677888888889999999998 87 47899999999999999988876655422 235566776654
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDA 415 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~A 415 (431)
+.+++.+++..+...+ ...||.+++...
T Consensus 213 ~~R~al~~Ldq~~~~~----~~~It~~~V~~v 240 (559)
T PRK05563 213 GMRDALSILDQAISFG----DGKVTYEDALEV 240 (559)
T ss_pred CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 6677777777765442 345777766554
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.7e-15 Score=157.65 Aligned_cols=208 Identities=17% Similarity=0.203 Sum_probs=144.7
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF------------ 240 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~------------ 240 (431)
...+|++|+|++..++.|...+... ..++.+||+||+|||||++|+++|+.+++.-
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 3678999999999999998887642 1346689999999999999999999876410
Q ss_pred -EEeehhhhhHh----h------hcchHHHHHHHHHHHHhC----CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHH
Q psy15151 241 -LKLAGPQLVQM----F------IGDGAKLVRDAFALAKEK----APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 305 (431)
Q Consensus 241 -i~i~~~~l~~~----~------~g~~~~~~~~lf~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 305 (431)
..-+|..+... + ...+...++.+.+.+... .+.|++|||+|.| +.+.++.|+..
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-----------s~~a~NaLLKt 147 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-----------TNTAFNAMLKT 147 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-----------CHHHHHHHHHh
Confidence 00011111100 0 011234566666665432 3579999999999 55566666666
Q ss_pred HHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCCC
Q psy15151 306 LNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDFN 384 (431)
Q Consensus 306 L~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~s 384 (431)
|++ ....+.+|++|+.+..+.+.+++ |+ ..+.|.+++.++..+.++..+.+.++.-+ ..+..|+..+.| +
T Consensus 148 LEE-----PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-s 218 (618)
T PRK14951 148 LEE-----PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-S 218 (618)
T ss_pred ccc-----CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 554 35677788888888889889988 87 78999999999999999988876555422 235667776664 6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 385 GAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 385 ~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
.+++.+++..+... +...||.+++.+.+
T Consensus 219 lR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 219 MRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred HHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 67777777666544 34457877776554
No 100
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.4e-15 Score=157.39 Aligned_cols=208 Identities=17% Similarity=0.137 Sum_probs=142.0
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce-------EEe-e
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF-------LKL-A 244 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~-------i~i-~ 244 (431)
...+|++|+|++..++.|..++... ..++.+||+||+|||||++|+++|+.+.+.- -.+ +
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 3678999999999999999987742 1345689999999999999999999866421 000 0
Q ss_pred hhhhhHh---------hhc---chHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHh
Q psy15151 245 GPQLVQM---------FIG---DGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 308 (431)
Q Consensus 245 ~~~l~~~---------~~g---~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ 308 (431)
|..+... .-+ .+...++.+.+.+.. ..+.|++|||+|.| +...++.|+..|++
T Consensus 76 C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A~NALLK~LEE 144 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAGFNALLKIVEE 144 (584)
T ss_pred HHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHHHHHHHHHHhc
Confidence 1111000 001 123344555444432 34579999999999 56677777777765
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCCCHHH
Q psy15151 309 LDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDFNGAQ 387 (431)
Q Consensus 309 ~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~s~~d 387 (431)
...++++|++|+.++.+.+.+++ |. .++.|.+++.++..+.+...++..++.-+ ..+..|+.. .+.+.++
T Consensus 145 -----pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~-s~GdlR~ 215 (584)
T PRK14952 145 -----PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRA-GGGSPRD 215 (584)
T ss_pred -----CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCHHH
Confidence 45678888888888999999998 75 68999999999999999988876654422 223445444 4456677
Q ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q psy15151 388 CKAVCVEAGMIALRRGAAIVTHEDFMDA 415 (431)
Q Consensus 388 i~~l~~~A~~~A~~~~~~~It~ed~~~A 415 (431)
+.+++..+...+ +...||.+++...
T Consensus 216 aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 216 TLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred HHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 778777765432 2445776666544
No 101
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=3.4e-15 Score=154.97 Aligned_cols=202 Identities=15% Similarity=0.249 Sum_probs=142.4
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc--------------
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST-------------- 239 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~-------------- 239 (431)
+.+|++++|++..++.+...+... ..+..+||+||+|||||++|+.+|+.+.+.
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 678999999999999998877631 134568999999999999999999976541
Q ss_pred ----------eEEeehhhhhHhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHH
Q psy15151 240 ----------FLKLAGPQLVQMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 305 (431)
Q Consensus 240 ----------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 305 (431)
++.++... ..+...++.+.+.+.. +.+.|+||||+|.+ +...++.|+..
T Consensus 80 ~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~naLLK~ 142 (546)
T PRK14957 80 VAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSFNALLKT 142 (546)
T ss_pred HHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHHHHHHHH
Confidence 12222110 0112334455544432 34679999999998 66677778777
Q ss_pred HHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCCC
Q psy15151 306 LNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDFN 384 (431)
Q Consensus 306 L~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s 384 (431)
|++ ....+++|++|+.+..+.+.+++ |+ ..+.|.+++.++....+...++..++.. +..+..|+..+ +.+
T Consensus 143 LEe-----pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s-~Gd 213 (546)
T PRK14957 143 LEE-----PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA-KGS 213 (546)
T ss_pred Hhc-----CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCC
Confidence 765 34667788888888888888888 87 7899999999999998888877655442 22245566655 456
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q psy15151 385 GAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 385 ~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~ 417 (431)
.+++.+++..+...+ + ..|+.+++.+++.
T Consensus 214 lR~alnlLek~i~~~---~-~~It~~~V~~~l~ 242 (546)
T PRK14957 214 LRDALSLLDQAISFC---G-GELKQAQIKQMLG 242 (546)
T ss_pred HHHHHHHHHHHHHhc---c-CCCCHHHHHHHHc
Confidence 677777777766443 2 4588877776543
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.67 E-value=1.1e-15 Score=153.55 Aligned_cols=188 Identities=19% Similarity=0.286 Sum_probs=129.2
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEE-eeh------hhh
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLK-LAG------PQL 248 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~-i~~------~~l 248 (431)
.|++|+|++.+++.+...+..+..++ ...+...++++||+||||+|||++|+++|..+.+..-. ..| ..+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 58899999999999999998765432 22333456789999999999999999999976543100 000 000
Q ss_pred hHh------h-----hcchHHHHHHHHHHHHhC----CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC
Q psy15151 249 VQM------F-----IGDGAKLVRDAFALAKEK----APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS 313 (431)
Q Consensus 249 ~~~------~-----~g~~~~~~~~lf~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~ 313 (431)
... + ..-+...++.+++.+... .+.|+||||+|.+ +...++.|+..|++
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----------~~~aanaLLk~LEe----- 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----------TERAANALLKAVEE----- 143 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----------CHHHHHHHHHHhhc-----
Confidence 000 0 011234577777776543 3569999999999 56666777777764
Q ss_pred CCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHH
Q psy15151 314 STADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCK 389 (431)
Q Consensus 314 ~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~ 389 (431)
...++++|++|+.++.+.|.+++ |+ ..+.|++|+.++..+++.... ++. +.....++..+.|..+..+.
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHH
Confidence 34456666677778999999999 87 689999999999888776322 233 22355677788887765443
No 103
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.67 E-value=1.2e-15 Score=167.40 Aligned_cols=168 Identities=21% Similarity=0.318 Sum_probs=133.6
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i 243 (431)
.-.++.++|+++.++++.+.+..- ...+++|+||||||||++|+++|... +.+++.+
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r~-------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQRR-------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhcC-------------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 457889999999999988876542 33679999999999999999999976 6788888
Q ss_pred ehhhhh--HhhhcchHHHHHHHHHHHHh-CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15151 244 AGPQLV--QMFIGDGAKLVRDAFALAKE-KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKV 320 (431)
Q Consensus 244 ~~~~l~--~~~~g~~~~~~~~lf~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~v 320 (431)
+...++ .++.|+.+..++.+|+.+.. ..++||||||+|.+++.+... +..+.++.|...+ ..+.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~---~~~d~~~~lkp~l-------~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPAL-------ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc---cchhHHHHhcchh-------hcCCCeE
Confidence 888876 45788899999999987644 568899999999998765322 2334555555444 3578999
Q ss_pred EEEeCCCCC-----CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCC
Q psy15151 321 IAATNRVDI-----LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNV 367 (431)
Q Consensus 321 I~ttn~~~~-----l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~ 367 (431)
|++|+..+. +|+++.| ||+ .|.++.|+.+++..|++.....+..
T Consensus 311 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 999998763 8999999 997 5889999999999999877655443
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.5e-15 Score=158.44 Aligned_cols=208 Identities=17% Similarity=0.184 Sum_probs=144.4
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceE-E-eeh------
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFL-K-LAG------ 245 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i-~-i~~------ 245 (431)
+.+|++|+|++..++.+..++... ..++.+||+||||+|||++|+.+|+.+++... . -.|
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 578999999999999998887642 13456899999999999999999998765210 0 011
Q ss_pred hhhhHh----------hhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC
Q psy15151 246 PQLVQM----------FIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 311 (431)
Q Consensus 246 ~~l~~~----------~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~ 311 (431)
..+... -.......++.+.+.+.. +.+.|++|||+|.+ +.+.++.|+..|++
T Consensus 80 ~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~~a~naLLK~LEe--- 145 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SKSAFNAMLKTLEE--- 145 (527)
T ss_pred HHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CHHHHHHHHHHHhC---
Confidence 000000 001233456666666543 23569999999998 55556666666654
Q ss_pred CCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCCCHHHHHH
Q psy15151 312 FSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDFNGAQCKA 390 (431)
Q Consensus 312 ~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~s~~di~~ 390 (431)
....+++|++|+.+..+.+.+++ |+ ..+.|++++.++....+...+...++..+ ..+..|+..+. .+.+++.+
T Consensus 146 --pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~-Gslr~al~ 219 (527)
T PRK14969 146 --PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA-GSMRDALS 219 (527)
T ss_pred --CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHH
Confidence 34677888888888888888888 77 68999999999999988887765554422 22455666554 55677888
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHH
Q psy15151 391 VCVEAGMIALRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 391 l~~~A~~~A~~~~~~~It~ed~~~Al~ 417 (431)
++..+... +...|+.+++...+.
T Consensus 220 lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 220 LLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHh----cCCCcCHHHHHHHHC
Confidence 88776543 355688887776554
No 105
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.66 E-value=2.9e-15 Score=164.50 Aligned_cols=201 Identities=22% Similarity=0.298 Sum_probs=148.9
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i 243 (431)
.-.++.++|.++.++++.+.+... ...+++|+||||||||++|+.+|... +.+++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r~-------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGRR-------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHccc-------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 456889999999999999877642 44689999999999999999999974 3678999
Q ss_pred ehhhhh--HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15151 244 AGPQLV--QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321 (431)
Q Consensus 244 ~~~~l~--~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI 321 (431)
+++.++ .+|.|+.+..++.+++.+....+.||||||||.+++.+... ++.+..+.|...| ..+.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~---g~~~~a~lLkp~l-------~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE---GAIDAANILKPAL-------ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC---CcccHHHHhHHHH-------hCCCcEEE
Confidence 998886 46789999999999999988888999999999998765322 2223445554444 25778899
Q ss_pred EEeCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhc----CCCC-CCCCHHHHHHHcCCCC-----HH
Q psy15151 322 AATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK----MNVS-PDVNYEELSRSTDDFN-----GA 386 (431)
Q Consensus 322 ~ttn~~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~----~~~~-~~~~~~~la~~~~g~s-----~~ 386 (431)
++|+..+ ..++++.+ ||. .|.++.|+.++...|++..... ..+. ++..+..++..+.+|. +.
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPd 388 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPD 388 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCch
Confidence 9999764 37899999 995 5889999999998888754321 2222 2222556666666653 34
Q ss_pred HHHHHHHHHHHHHH
Q psy15151 387 QCKAVCVEAGMIAL 400 (431)
Q Consensus 387 di~~l~~~A~~~A~ 400 (431)
..-.++.+|+....
T Consensus 389 kaidlld~a~a~~~ 402 (821)
T CHL00095 389 KAIDLLDEAGSRVR 402 (821)
T ss_pred HHHHHHHHHHHHHH
Confidence 44466777665543
No 106
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.66 E-value=5.6e-15 Score=145.43 Aligned_cols=159 Identities=20% Similarity=0.239 Sum_probs=114.7
Q ss_pred ccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 170 ~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
....+.++++++|++..+..+...+... ..+..+||+||||+|||++|++++++.+.+++.++++.
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-- 78 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-- 78 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--
Confidence 3344678999999999999998877621 13456777999999999999999999999999998875
Q ss_pred HhhhcchHHHHHHHHHHHH-hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 250 QMFIGDGAKLVRDAFALAK-EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 250 ~~~~g~~~~~~~~lf~~a~-~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
.. .......+........ ...+.||+|||+|.+. ..+.+..|..+++.. ..++.+|+++|.+.
T Consensus 79 ~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~~-----~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 79 CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEAY-----SKNCSFIITANNKN 142 (316)
T ss_pred cc-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHhc-----CCCceEEEEcCChh
Confidence 11 1111111211111111 1357899999999872 334556666666652 35667899999999
Q ss_pred CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHH
Q psy15151 329 ILDPALLRSGRLDRKIEFPHPNEEARARIMQIH 361 (431)
Q Consensus 329 ~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~ 361 (431)
.+.+++++ |+ ..+.|+.|+.+++.+++...
T Consensus 143 ~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 143 GIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred hchHHHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence 99999999 88 47899999999998877654
No 107
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.66 E-value=5.8e-15 Score=138.07 Aligned_cols=203 Identities=18% Similarity=0.239 Sum_probs=137.4
Q ss_pred CCCccccc--CchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh
Q psy15151 174 TEQYSDIG--GLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL 248 (431)
Q Consensus 174 ~~~~~~i~--G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l 248 (431)
..+|++++ +....+..+...+.. ..+.+++|+||+|||||++|++++... +.++++++|+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 44566665 455566666665431 245789999999999999999999875 467889999887
Q ss_pred hHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC-CC
Q psy15151 249 VQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN-RV 327 (431)
Q Consensus 249 ~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn-~~ 327 (431)
.... ..++.... .+.+|+|||+|.+.. +.+.+..+..+++.+.. .+. .+|+|++ .+
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~~---~~~-~iIits~~~~ 134 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAG---------QPEWQEALFHLYNRVRE---AGG-RLLIAGRAAP 134 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCC-eEEEECCCCh
Confidence 6432 12333222 235999999999832 12335677777766432 122 3555555 33
Q ss_pred CCC---ChhhhcCCCc--ceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q psy15151 328 DIL---DPALLRSGRL--DRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALR 401 (431)
Q Consensus 328 ~~l---~~~l~r~gR~--~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~ 401 (431)
..+ .+.+.+ |+ ...+.+|+|+.+++..+++.++.+..+. ++..+..|+.. .+.+.+++.++++.+...+..
T Consensus 135 ~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 135 AQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 332 267777 65 4789999999999999999877654443 12225667774 667889999999988876656
Q ss_pred hCCCCcCHHHHHHHH
Q psy15151 402 RGAAIVTHEDFMDAI 416 (431)
Q Consensus 402 ~~~~~It~ed~~~Al 416 (431)
.+ ..|+.+.+.+.+
T Consensus 212 ~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 212 AK-RKITIPFVKEVL 225 (226)
T ss_pred hC-CCCCHHHHHHHh
Confidence 55 469988887765
No 108
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=5e-15 Score=153.31 Aligned_cols=202 Identities=18% Similarity=0.237 Sum_probs=140.1
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST------------- 239 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~------------- 239 (431)
.+..|++|+|++..+..|..++... ..++.+||+||||||||++|+++|+.+.+.
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 3678999999999999998887642 134567999999999999999999986531
Q ss_pred ----------eEEeehhhhhHhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHH
Q psy15151 240 ----------FLKLAGPQLVQMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 305 (431)
Q Consensus 240 ----------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 305 (431)
++.++.+. ..+...++.+.+.+.. ..+.||+|||+|.+ +...++.|+..
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~naLLk~ 139 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNALLKT 139 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHHHHHH
Confidence 22222210 1123445555444433 34679999999987 44445555555
Q ss_pred HHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCCC
Q psy15151 306 LNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDFN 384 (431)
Q Consensus 306 L~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s 384 (431)
++. ...++++|+++|.+..+.+.+.+ |+ ..+.|++|+.++....+...+.+.++.- +..+..|+..+.| +
T Consensus 140 LEe-----p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-d 210 (504)
T PRK14963 140 LEE-----PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-A 210 (504)
T ss_pred HHh-----CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 543 33567788888989999999998 77 4799999999999999998887665542 2235667776653 4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q psy15151 385 GAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 385 ~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~ 417 (431)
.+++.++++.+... ...||.+++...+.
T Consensus 211 lR~aln~Lekl~~~-----~~~It~~~V~~~l~ 238 (504)
T PRK14963 211 MRDAESLLERLLAL-----GTPVTRKQVEEALG 238 (504)
T ss_pred HHHHHHHHHHHHhc-----CCCCCHHHHHHHHC
Confidence 56666666665421 23688888776543
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=3.6e-15 Score=161.67 Aligned_cols=206 Identities=19% Similarity=0.125 Sum_probs=139.9
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceE-----Eeehhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFL-----KLAGPQ 247 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i-----~i~~~~ 247 (431)
...+|++|+|++..++.|...+... ..++.+||+||+|||||++|+.||+.+.+.-- .-.|..
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 4678999999999999998887631 13456899999999999999999998764210 001111
Q ss_pred hhH---h---------hhc---chHHHHHHHHHHH----HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHh
Q psy15151 248 LVQ---M---------FIG---DGAKLVRDAFALA----KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 308 (431)
Q Consensus 248 l~~---~---------~~g---~~~~~~~~lf~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ 308 (431)
+.. . +-+ .+...++.+.+.+ ....+.|+||||+|.| +.+.++.|+.+|++
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~a~NaLLK~LEE 146 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQGFNALLKIVEE 146 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHHHHHHHHHHHhC
Confidence 100 0 001 1223344443332 2345679999999999 66778888888876
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCCCHHH
Q psy15151 309 LDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDFNGAQ 387 (431)
Q Consensus 309 ~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s~~d 387 (431)
....+++|++|+.++.|.+.+++ |+ .++.|..++.++..++|...+++.++.- +..+..|+..+.| +.++
T Consensus 147 -----pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~ 217 (824)
T PRK07764 147 -----PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRD 217 (824)
T ss_pred -----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 34678888888888889999998 77 6899999999999999998887655542 2224556665554 6677
Q ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHH
Q psy15151 388 CKAVCVEAGMIALRRGAAIVTHEDFM 413 (431)
Q Consensus 388 i~~l~~~A~~~A~~~~~~~It~ed~~ 413 (431)
+.+++...+..+ +...||.+++.
T Consensus 218 Al~eLEKLia~~---~~~~IT~e~V~ 240 (824)
T PRK07764 218 SLSVLDQLLAGA---GPEGVTYERAV 240 (824)
T ss_pred HHHHHHHHHhhc---CCCCCCHHHHH
Confidence 777776655322 23446666443
No 110
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.66 E-value=6.9e-15 Score=162.07 Aligned_cols=201 Identities=19% Similarity=0.265 Sum_probs=148.5
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i 243 (431)
.-.++.++|+++.++.+.+.+... ...+++|+||||||||++|+++|... +.+++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r~-------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSRR-------------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhcC-------------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 557889999999999998876542 34678999999999999999999974 5678888
Q ss_pred ehhhhh--HhhhcchHHHHHHHHHHHHh-CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15151 244 AGPQLV--QMFIGDGAKLVRDAFALAKE-KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKV 320 (431)
Q Consensus 244 ~~~~l~--~~~~g~~~~~~~~lf~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~v 320 (431)
+...++ .+|.|+.+..++.+|..+.. ..+.||||||||.|++.+... +..+..+.|...+ ..+.+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~~~Lk~~l-------~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE---GAMDAGNMLKPAL-------ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc---chhHHHHHhchhh-------hcCceEE
Confidence 888775 46788888899999988865 458999999999998654221 1233344443332 3578999
Q ss_pred EEEeCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCC-----CHHHHHHHcCCCC-----H
Q psy15151 321 IAATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDV-----NYEELSRSTDDFN-----G 385 (431)
Q Consensus 321 I~ttn~~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-----~~~~la~~~~g~s-----~ 385 (431)
|++|+..+ .+|+++.| ||. .|.++.|+.+++..|++.....+.....+ .+...+..+.+|. |
T Consensus 306 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lP 382 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLP 382 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCc
Confidence 99999764 47999999 996 58899999999999999877665544333 2444555555552 3
Q ss_pred HHHHHHHHHHHHHHH
Q psy15151 386 AQCKAVCVEAGMIAL 400 (431)
Q Consensus 386 ~di~~l~~~A~~~A~ 400 (431)
..--.++.+|+..+.
T Consensus 383 dkAidlld~a~a~~~ 397 (852)
T TIGR03346 383 DKAIDLIDEAAARIR 397 (852)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444566777776543
No 111
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.66 E-value=7.1e-15 Score=146.92 Aligned_cols=203 Identities=19% Similarity=0.274 Sum_probs=140.8
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST------------- 239 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~------------- 239 (431)
++.+|++++|++..++.+...+... ..++.+||+||||+|||++|+++++.+.+.
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3678999999999999998877531 134678999999999999999999986432
Q ss_pred -----------eEEeehhhhhHhhhcchHHHHHHHHHHHHhC----CCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 240 -----------FLKLAGPQLVQMFIGDGAKLVRDAFALAKEK----APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 240 -----------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
++.++... ......++.+++.+... .+.||+|||+|.+ +...++.++.
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l-----------~~~~~~~Ll~ 139 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML-----------SKSAFNALLK 139 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc-----------CHHHHHHHHH
Confidence 22222210 11334466677666543 3469999999998 3444455555
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~ 383 (431)
.++. ...++++|++||.++.+.+.+.+ |+ ..+.|++|+.++...++..++++.++.- +..+..++..+.|
T Consensus 140 ~le~-----~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g- 210 (355)
T TIGR02397 140 TLEE-----PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG- 210 (355)
T ss_pred HHhC-----CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 5433 34567788888888888889988 87 5789999999999999999887665432 2234556666554
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~ 417 (431)
+.+.+.+.+..+...+ ...||.+++.+++.
T Consensus 211 ~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 211 SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 5566666666655442 23488888776543
No 112
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.65 E-value=3.2e-15 Score=148.44 Aligned_cols=243 Identities=23% Similarity=0.296 Sum_probs=160.8
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhc-CCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH-hhhc-
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNL-GIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ-MFIG- 254 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~-g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~-~~~g- 254 (431)
..|+|++++++.+..++.....+......+ .-.+|+++||+||||||||++|+++|..++.+|+.++++.+.. .|.|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 458999999999988877542222111111 1124589999999999999999999999999999999887764 5666
Q ss_pred chHHHHHHHHHHH-------------------------------------------------------------------
Q psy15151 255 DGAKLVRDAFALA------------------------------------------------------------------- 267 (431)
Q Consensus 255 ~~~~~~~~lf~~a------------------------------------------------------------------- 267 (431)
..+..++.+|+.+
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 3444444444433
Q ss_pred ------------------------------------------------------------------------HhCCCeEE
Q psy15151 268 ------------------------------------------------------------------------KEKAPAII 275 (431)
Q Consensus 268 ------------------------------------------------------------------------~~~~p~vl 275 (431)
+....+||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 01134799
Q ss_pred EEccccccccCCCC-CCCcCcHHHHHHHHHHHHhhc-----CCCCCCCeEEEEEe----CCCCCCChhhhcCCCcceEEE
Q psy15151 276 FIDELDAIGTKRFD-SEKAGDREVQRTMLELLNQLD-----GFSSTADIKVIAAT----NRVDILDPALLRSGRLDRKIE 345 (431)
Q Consensus 276 ~iDEid~l~~~r~~-~~~~~~~~~~~~l~~lL~~~~-----~~~~~~~v~vI~tt----n~~~~l~~~l~r~gR~~~~i~ 345 (431)
||||||+++.+..+ ....+...+|+.|+.+++.-. +.-...++++|++. ..|+.|-|+|.- ||..++.
T Consensus 252 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 329 (441)
T TIGR00390 252 FIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVE 329 (441)
T ss_pred EEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 99999999977632 223445568998988886521 11123567777764 246667788887 9999999
Q ss_pred cCCCCHHHHHHHHH--------HHH---hcCCCC---CCCCHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHhC-
Q psy15151 346 FPHPNEEARARIMQ--------IHS---RKMNVS---PDVNYEELSRST-------DDFNGAQCKAVCVEAGMIALRRG- 403 (431)
Q Consensus 346 ~~~p~~~~r~~Il~--------~~l---~~~~~~---~~~~~~~la~~~-------~g~s~~di~~l~~~A~~~A~~~~- 403 (431)
+.+++.++...||. +|. +..++. .+..+..||..+ .+.-.+-|..++.....-+....
T Consensus 330 L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p 409 (441)
T TIGR00390 330 LQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAP 409 (441)
T ss_pred CCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCC
Confidence 99999999998873 221 111211 122356666554 34445667777666655544432
Q ss_pred -----CCCcCHHHHHHHHHHHHHh
Q psy15151 404 -----AAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 404 -----~~~It~ed~~~Al~~~~~~ 422 (431)
...|+.+-+...+..+..+
T Consensus 410 ~~~~~~v~I~~~~V~~~l~~~~~~ 433 (441)
T TIGR00390 410 DLSGQNITIDADYVSKKLGALVAD 433 (441)
T ss_pred CCCCCEEEECHHHHHhHHHHHHhc
Confidence 2357888888877776543
No 113
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.65 E-value=1.9e-14 Score=134.89 Aligned_cols=202 Identities=15% Similarity=0.188 Sum_probs=136.2
Q ss_pred CCCCCccccc-C-chHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehh
Q psy15151 172 RPTEQYSDIG-G-LDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGP 246 (431)
Q Consensus 172 ~~~~~~~~i~-G-~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~ 246 (431)
.+..+|++++ | ....+..+..... +.....+++|+||+|||||+||++++++. +.+++.+++.
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 3456788866 3 3444444444332 12245789999999999999999999864 6688888887
Q ss_pred hhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 247 QLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 247 ~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
.+.... .. .....+|+|||+|.+ +...+..|..+++.... .+..++|++++.
T Consensus 80 ~~~~~~------------~~--~~~~~~liiDdi~~l-----------~~~~~~~L~~~~~~~~~---~~~~~vl~~~~~ 131 (227)
T PRK08903 80 SPLLAF------------DF--DPEAELYAVDDVERL-----------DDAQQIALFNLFNRVRA---HGQGALLVAGPA 131 (227)
T ss_pred HhHHHH------------hh--cccCCEEEEeChhhc-----------CchHHHHHHHHHHHHHH---cCCcEEEEeCCC
Confidence 654321 11 123569999999987 34456677777776532 234345555553
Q ss_pred CC---CCChhhhcCCCc--ceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy15151 327 VD---ILDPALLRSGRL--DRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDFNGAQCKAVCVEAGMIAL 400 (431)
Q Consensus 327 ~~---~l~~~l~r~gR~--~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s~~di~~l~~~A~~~A~ 400 (431)
+. .+.+.+.+ || ...+.+++|+.+++..++.......++.- +..++.|+.. ..-+.+++..+++.....|.
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~-~~gn~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTH-FRRDMPSLMALLDALDRYSL 208 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHH
Confidence 22 25577777 66 57999999999999999988766554442 2236667774 44677889999888666665
Q ss_pred HhCCCCcCHHHHHHHHH
Q psy15151 401 RRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 401 ~~~~~~It~ed~~~Al~ 417 (431)
..+ ..||...+.+++.
T Consensus 209 ~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 EQK-RPVTLPLLREMLA 224 (227)
T ss_pred HhC-CCCCHHHHHHHHh
Confidence 555 5799999888874
No 114
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.65 E-value=5.8e-15 Score=158.28 Aligned_cols=203 Identities=23% Similarity=0.265 Sum_probs=137.6
Q ss_pred CCCcccccCchHHHH---HHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 174 TEQYSDIGGLDKQIQ---ELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~---~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
+.++++++|++..+. .+...+.. ....+++||||||||||++|+++|+..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 578999999999885 34444432 133579999999999999999999999999998887531
Q ss_pred hhhcchHHHHHHHHHHHH-----hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q psy15151 251 MFIGDGAKLVRDAFALAK-----EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN 325 (431)
Q Consensus 251 ~~~g~~~~~~~~lf~~a~-----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn 325 (431)
....++..+..+. .....+|||||||.+ +...+..|+..++ .+.+++|++|+
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----------n~~qQdaLL~~lE-------~g~IiLI~aTT 145 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----------NKAQQDALLPWVE-------NGTITLIGATT 145 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----------CHHHHHHHHHHhc-------CceEEEEEecC
Confidence 1112233333321 134579999999998 5556666666553 24567777663
Q ss_pred --CCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhc-------CCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHH
Q psy15151 326 --RVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK-------MNVS-PDVNYEELSRSTDDFNGAQCKAVCVEA 395 (431)
Q Consensus 326 --~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~-------~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A 395 (431)
....+++++++ |. ..+.|++++.+++..+++..+.. ..+. ++..++.|+..+. .+.+.+.+++..+
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~-GD~R~lln~Le~a 221 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVAN-GDARSLLNALELA 221 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 33468889998 65 46899999999999999988762 1111 1222566777664 4567777777776
Q ss_pred HHHHHHhC--CCCcCHHHHHHHHHH
Q psy15151 396 GMIALRRG--AAIVTHEDFMDAIME 418 (431)
Q Consensus 396 ~~~A~~~~--~~~It~ed~~~Al~~ 418 (431)
...+.... ...|+.+++.+++.+
T Consensus 222 ~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 222 VESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred HHhcccCCCCceeccHHHHHHHHHH
Confidence 64332222 223788888887766
No 115
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=6.9e-15 Score=153.65 Aligned_cols=202 Identities=16% Similarity=0.202 Sum_probs=138.2
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST------------- 239 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~------------- 239 (431)
...+|++|+|++..+..|..++... ..+..+||+||+|||||++|+.+|+.+.+.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 3678999999999999998877631 124679999999999999999999987652
Q ss_pred -----------eEEeehhhhhHhhhcchHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 240 -----------FLKLAGPQLVQMFIGDGAKLVRDAFALAK----EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 240 -----------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
++.+++.. ..+...++.+.+.+. .....||||||+|.| +.+.++.|+.
T Consensus 79 C~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a~naLLk 141 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------TREAFNALLK 141 (624)
T ss_pred HHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-----------CHHHHHHHHH
Confidence 22222210 011223344333322 234679999999998 5566677777
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~ 383 (431)
.|++ ...++++|++||.+..+.+.+++ |+ .++.|++++.++...+++..+...++. ++..+..|+..+. .
T Consensus 142 ~LEE-----P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~-G 212 (624)
T PRK14959 142 TLEE-----PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAA-G 212 (624)
T ss_pred Hhhc-----cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 6655 33578888999988889888888 87 478999999999999998877765543 2223556666554 3
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
+.+++.+++..+. ..+...|+.+++..++
T Consensus 213 dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 213 SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 3455555555432 2344568888765544
No 116
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=1e-14 Score=154.49 Aligned_cols=207 Identities=18% Similarity=0.274 Sum_probs=144.5
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEE---eehhhhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLK---LAGPQLV 249 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~---i~~~~l~ 249 (431)
++.+|++|+|++.+++.+..++... ..++.+||+||+|+|||++|+++|..+.+.-.. -.|..+.
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 3678999999999999999888742 134678999999999999999999987653210 1121111
Q ss_pred H---h----h--hc---chHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC
Q psy15151 250 Q---M----F--IG---DGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS 313 (431)
Q Consensus 250 ~---~----~--~g---~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~ 313 (431)
. . + -+ .+...++.+.+.+.. +.+.|++|||+|.| ....++.|+..|++
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L-----------T~~A~NALLKtLEE----- 144 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML-----------SKSAFNALLKTLEE----- 144 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC-----------CHHHHHHHHHHhhc-----
Confidence 0 0 0 01 124456777776654 34579999999998 45566777766665
Q ss_pred CCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCCCHHHHHHHH
Q psy15151 314 STADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDFNGAQCKAVC 392 (431)
Q Consensus 314 ~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~s~~di~~l~ 392 (431)
.+..+++|++|+.++.+.+.+++ |+ ..+.|.+|+.++....+...+...++.-+ ..+..++..+. .+.+++..++
T Consensus 145 PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~-GslR~AlslL 220 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSS-GSLRDALSIA 220 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHH
Confidence 45677888888889999999998 88 48999999999999999887776554422 22555666555 4557777777
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHH
Q psy15151 393 VEAGMIALRRGAAIVTHEDFMDA 415 (431)
Q Consensus 393 ~~A~~~A~~~~~~~It~ed~~~A 415 (431)
..+...+ ...|+.+++.+.
T Consensus 221 ekl~~y~----~~~It~e~V~el 239 (725)
T PRK07133 221 EQVSIFG----NNKITLKNVEEL 239 (725)
T ss_pred HHHHHhc----cCCCCHHHHHHH
Confidence 6655432 234777777654
No 117
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=6.6e-15 Score=153.09 Aligned_cols=201 Identities=15% Similarity=0.257 Sum_probs=140.6
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST------------- 239 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~------------- 239 (431)
.+.+|++++|++..++.+..++... ..++++||+||+|+|||++|+++|..+.+.
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 3678999999999999998877531 134679999999999999999999986531
Q ss_pred -----------eEEeehhhhhHhhhcchHHHHHHHHHHHHhC----CCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 240 -----------FLKLAGPQLVQMFIGDGAKLVRDAFALAKEK----APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 240 -----------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
++.++++. ..+...++.+.+.+... .+.|++|||+|.| +...++.|+.
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-----------t~~A~NaLLK 141 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-----------STSAWNALLK 141 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-----------CHHHHHHHHH
Confidence 11121110 11233456666555443 3469999999998 4556677777
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~ 383 (431)
.|++ .+..+++|++|+.+..+.+.+++ |+ ..+.|++|+..+....+...+...+.. ++..+..++..+.|
T Consensus 142 tLEE-----Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G- 212 (605)
T PRK05896 142 TLEE-----PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG- 212 (605)
T ss_pred HHHh-----CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 7765 34678888888889999999998 87 479999999999999999877665433 12235566666654
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDA 415 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~A 415 (431)
+.+++.+++..+...+ +. .|+.+++...
T Consensus 213 dlR~AlnlLekL~~y~---~~-~It~e~V~el 240 (605)
T PRK05896 213 SLRDGLSILDQLSTFK---NS-EIDIEDINKT 240 (605)
T ss_pred cHHHHHHHHHHHHhhc---CC-CCCHHHHHHH
Confidence 5566666666644332 32 3777766653
No 118
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.8e-14 Score=148.80 Aligned_cols=208 Identities=18% Similarity=0.226 Sum_probs=141.9
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-------eE-Eee
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST-------FL-KLA 244 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~-------~i-~i~ 244 (431)
.+.+|++++|++..+..+..++... ..++.+|||||+|+|||++|+.+|..+++. .- ..+
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 3678999999999999998888641 134568999999999999999999987631 10 011
Q ss_pred hhhhhHh-------h---hcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 245 GPQLVQM-------F---IGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 245 ~~~l~~~-------~---~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
|..+... . ...+...++.+.+.+.. +.+.|++|||+|.+ +...++.|+..++.
T Consensus 79 c~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L-----------t~~a~naLLk~LEe-- 145 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML-----------TKEAFNALLKTLEE-- 145 (486)
T ss_pred HHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc-----------CHHHHHHHHHHHhc--
Confidence 2111110 0 01123345566555543 34579999999998 44555666666654
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCCCHHHHH
Q psy15151 311 GFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDFNGAQCK 389 (431)
Q Consensus 311 ~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~s~~di~ 389 (431)
.+..+++|++|+.++.+.+++.+ |+ ..+.|++|+.++...++..+++..++.-+ ..+..|+..+. .+.+++.
T Consensus 146 ---pp~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~-G~lr~al 218 (486)
T PRK14953 146 ---PPPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASE-GGMRDAA 218 (486)
T ss_pred ---CCCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHH
Confidence 34567777778888888889988 77 47999999999999999998887665422 22555666555 4567777
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 390 AVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 390 ~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
+++..+... +...||.+++..++
T Consensus 219 ~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 219 SLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHh
Confidence 777776543 24468888777654
No 119
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.64 E-value=2.2e-14 Score=152.31 Aligned_cols=218 Identities=28% Similarity=0.422 Sum_probs=142.9
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i 243 (431)
..+|++++|++..++.+...+..+ .+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~-------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP-------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC-------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 578999999999999887665421 34679999999999999999998754 3578999
Q ss_pred ehhhhh-------HhhhcchHHHH----HHHHH----------HHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHH
Q psy15151 244 AGPQLV-------QMFIGDGAKLV----RDAFA----------LAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTM 302 (431)
Q Consensus 244 ~~~~l~-------~~~~g~~~~~~----~~lf~----------~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 302 (431)
+|..+- ..++|...... +..+. .......++|||||++.| +...+..|
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q~~L 285 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQNKL 285 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHHHHH
Confidence 987541 11222211100 00000 001123469999999998 88888999
Q ss_pred HHHHHhhcC-----------------------CCCCCCeEEEEE-eCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHH
Q psy15151 303 LELLNQLDG-----------------------FSSTADIKVIAA-TNRVDILDPALLRSGRLDRKIEFPHPNEEARARIM 358 (431)
Q Consensus 303 ~~lL~~~~~-----------------------~~~~~~v~vI~t-tn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il 358 (431)
+.+++.... .....++++|++ |+.++.+++++++ ||. .+.|++++.+++..|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHH
Confidence 988876210 001234566654 4568889999988 986 6789999999999999
Q ss_pred HHHHhcCCCCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHHHH
Q psy15151 359 QIHSRKMNVSP-DVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR--------GAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 359 ~~~l~~~~~~~-~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~--------~~~~It~ed~~~Al~~~~ 420 (431)
+..+......- +..+..|+..+. .++...+++..+...+..+ ....|+.+|+.+++..-+
T Consensus 363 ~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 363 LNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 99988654321 112344544432 4454445554444333211 233699999999987643
No 120
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=8e-15 Score=154.67 Aligned_cols=201 Identities=19% Similarity=0.264 Sum_probs=144.2
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST------------- 239 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~------------- 239 (431)
...+|++|+|++..++.|...+... ..++.+|||||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 3678999999999999999887642 134678999999999999999999986542
Q ss_pred -----------eEEeehhhhhHhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 240 -----------FLKLAGPQLVQMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 240 -----------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
++.+++.. ..+...++.+.+.+.. ..+.|++|||+|.| +...++.|+.
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~~a~naLLk 141 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------STNAFNALLK 141 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CHHHHHHHHH
Confidence 12222111 1123456666665543 23569999999998 5666777877
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~ 383 (431)
.|++ ...++++|++|+.++.+.+.+++ |+ ..+.|.+++..+....+...+++.++.- +..+..|+..+.|
T Consensus 142 ~LEe-----pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G- 212 (576)
T PRK14965 142 TLEE-----PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG- 212 (576)
T ss_pred HHHc-----CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-
Confidence 7775 45678889999999999999998 77 5889999999999988888777655442 2235566666654
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDA 415 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~A 415 (431)
+.+++.+++..+..++ + ..|+.+|+...
T Consensus 213 ~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 213 SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 5577777776655443 2 34777776554
No 121
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.64 E-value=1.1e-14 Score=149.23 Aligned_cols=190 Identities=16% Similarity=0.234 Sum_probs=129.4
Q ss_pred CCceeeCCCCCchHHHHHHHHHHc-----CCceEEeehhhhhHhhhcchH-HHHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQT-----KSTFLKLAGPQLVQMFIGDGA-KLVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~-----~~~~i~i~~~~l~~~~~g~~~-~~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
.+++||||||+|||+|++++++++ +..++++++.+++..+..... +.+.. |.......+.+|+|||++.+.++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 569999999999999999999974 456888999887766543211 11222 22222335779999999988543
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---CChhhhcCCCc--ceEEEcCCCCHHHHHHHHHHH
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI---LDPALLRSGRL--DRKIEFPHPNEEARARIMQIH 361 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~r~gR~--~~~i~~~~p~~~~r~~Il~~~ 361 (431)
...+..+..+++.+.. .+..+||++.+.|.. +.+.+.+ || ...+.+.+|+.+.|..|++..
T Consensus 210 ---------~~~q~elf~~~n~l~~---~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 210 ---------TGVQTELFHTFNELHD---SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred ---------HHHHHHHHHHHHHHHH---cCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 2344556666665432 233444444455554 4567777 66 458899999999999999988
Q ss_pred HhcCCC--CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q psy15151 362 SRKMNV--SPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 362 l~~~~~--~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~ 420 (431)
+...++ ++++ ++.|+.... .+.+++..++......+...++ .||.+.+.+++..+.
T Consensus 276 ~~~~~~~l~~ev-~~~Ia~~~~-~~~R~L~g~l~~l~~~~~~~~~-~it~~~a~~~L~~~~ 333 (440)
T PRK14088 276 LEIEHGELPEEV-LNFVAENVD-DNLRRLRGAIIKLLVYKETTGE-EVDLKEAILLLKDFI 333 (440)
T ss_pred HHhcCCCCCHHH-HHHHHhccc-cCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 875433 3333 667777665 4668888888887766666554 488888888888764
No 122
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.63 E-value=4.3e-15 Score=147.60 Aligned_cols=244 Identities=22% Similarity=0.277 Sum_probs=160.9
Q ss_pred cccccCchHHHHHHHHHhhccccChHHHHhcCC-CCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH-hhhc
Q psy15151 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGI-QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ-MFIG 254 (431)
Q Consensus 177 ~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~-~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~-~~~g 254 (431)
-..|+|++++++.+..++.....+......... ..|.++||+||||||||++|+++|..++.+|+.++++++.. .|.|
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 345999999999998888643221111001100 12589999999999999999999999999999999988875 5777
Q ss_pred -chHHHHHHHHHHHH-----------------------------------------------------------------
Q psy15151 255 -DGAKLVRDAFALAK----------------------------------------------------------------- 268 (431)
Q Consensus 255 -~~~~~~~~lf~~a~----------------------------------------------------------------- 268 (431)
..+..++.+|+.|.
T Consensus 94 ~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~i 173 (443)
T PRK05201 94 RDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEI 173 (443)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEE
Confidence 33455555554440
Q ss_pred -------------------------------------------------------------------------hCCCeEE
Q psy15151 269 -------------------------------------------------------------------------EKAPAII 275 (431)
Q Consensus 269 -------------------------------------------------------------------------~~~p~vl 275 (431)
....+||
T Consensus 174 ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIV 253 (443)
T PRK05201 174 EIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIV 253 (443)
T ss_pred EEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 0124699
Q ss_pred EEccccccccCCCC-CCCcCcHHHHHHHHHHHHhhc-----CCCCCCCeEEEEEe----CCCCCCChhhhcCCCcceEEE
Q psy15151 276 FIDELDAIGTKRFD-SEKAGDREVQRTMLELLNQLD-----GFSSTADIKVIAAT----NRVDILDPALLRSGRLDRKIE 345 (431)
Q Consensus 276 ~iDEid~l~~~r~~-~~~~~~~~~~~~l~~lL~~~~-----~~~~~~~v~vI~tt----n~~~~l~~~l~r~gR~~~~i~ 345 (431)
||||||+++.+... ....+...+|+.|+.+++.-. +.-...++++|++. ..|+.|-|+|.- ||..++.
T Consensus 254 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 331 (443)
T PRK05201 254 FIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVE 331 (443)
T ss_pred EEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 99999999977532 223445568898888886521 11123567777764 346667799987 9999999
Q ss_pred cCCCCHHHHHHHHH--------HH---HhcCCCC---CCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHhC-
Q psy15151 346 FPHPNEEARARIMQ--------IH---SRKMNVS---PDVNYEELSRSTD-------DFNGAQCKAVCVEAGMIALRRG- 403 (431)
Q Consensus 346 ~~~p~~~~r~~Il~--------~~---l~~~~~~---~~~~~~~la~~~~-------g~s~~di~~l~~~A~~~A~~~~- 403 (431)
+.+++.++...||. +| +...++. .+..+..||..+. +.-.+-|..++.....-+....
T Consensus 332 L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p 411 (443)
T PRK05201 332 LDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAP 411 (443)
T ss_pred CCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCC
Confidence 99999999998883 22 1111221 1223566665442 4445667777766665544332
Q ss_pred -----CCCcCHHHHHHHHHHHHHh
Q psy15151 404 -----AAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 404 -----~~~It~ed~~~Al~~~~~~ 422 (431)
...|+.+-+...+..+..+
T Consensus 412 ~~~~~~v~I~~~~V~~~l~~l~~~ 435 (443)
T PRK05201 412 DMSGETVTIDAAYVDEKLGDLVKD 435 (443)
T ss_pred CCCCCEEEECHHHHHHHHHHHHhc
Confidence 2357888887777776543
No 123
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=2.5e-14 Score=148.84 Aligned_cols=191 Identities=16% Similarity=0.205 Sum_probs=134.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHHc-----CCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQT-----KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 287 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~-----~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r 287 (431)
..++|||++|+|||+|++++++.+ +..++++++.+++..+...........|..- -..+.+|+||||+.+..+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gk- 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDK- 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCC-
Confidence 459999999999999999999975 4678999999888776543322222233322 224579999999998543
Q ss_pred CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC----CCCChhhhcCCCc--ceEEEcCCCCHHHHHHHHHHH
Q psy15151 288 FDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV----DILDPALLRSGRL--DRKIEFPHPNEEARARIMQIH 361 (431)
Q Consensus 288 ~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~----~~l~~~l~r~gR~--~~~i~~~~p~~~~r~~Il~~~ 361 (431)
...+..|+.+++.+... +. .||+|+|.+ ..+++.|.+ || ..++.+.+|+.+.|..||+..
T Consensus 393 --------e~tqeeLF~l~N~l~e~---gk-~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 393 --------ESTQEEFFHTFNTLHNA---NK-QIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred --------HHHHHHHHHHHHHHHhc---CC-CEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHH
Confidence 24456677777775421 22 255677653 347788998 77 568899999999999999998
Q ss_pred HhcCCCCCC-CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q psy15151 362 SRKMNVSPD-VNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 362 l~~~~~~~~-~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~ 421 (431)
+...++.-+ ..++.|+.... -+.++|..++......|...+ ..||.+.+.+.++.+..
T Consensus 459 a~~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 459 AVQEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 876655422 22666777665 467888888888777666655 34788888777776644
No 124
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=3.1e-14 Score=149.82 Aligned_cols=208 Identities=18% Similarity=0.197 Sum_probs=147.8
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEe----------
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL---------- 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i---------- 243 (431)
..+|++|+|++..++.|...+... ..+..+||+||+|+|||++|+++|+.+.+.....
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 578999999999999999887642 2457899999999999999999999876532111
Q ss_pred ---ehhhhhHhh-------h---cchHHHHHHHHHHHHhC----CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHH
Q psy15151 244 ---AGPQLVQMF-------I---GDGAKLVRDAFALAKEK----APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELL 306 (431)
Q Consensus 244 ---~~~~l~~~~-------~---g~~~~~~~~lf~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL 306 (431)
+|..+.... . ..+...++.+.+.+... .+.|++|||+|.| +...++.|+..|
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-----------s~~a~naLLKtL 156 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-----------STAAFNALLKTL 156 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-----------CHHHHHHHHHHH
Confidence 111111100 0 01234567777766543 3679999999998 555667777777
Q ss_pred HhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCCCH
Q psy15151 307 NQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDFNG 385 (431)
Q Consensus 307 ~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~s~ 385 (431)
++ ....+++|++|+.++.+.+.+++ |+ ..+.|..++.++....+...+++.+..-+ ..+..|+..+. .+.
T Consensus 157 Ee-----Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~-Gdl 227 (598)
T PRK09111 157 EE-----PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAE-GSV 227 (598)
T ss_pred Hh-----CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCH
Confidence 65 34567788888888888889988 87 57999999999999999988876654422 23555666665 466
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q psy15151 386 AQCKAVCVEAGMIALRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 386 ~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~ 417 (431)
+++.+++..+... +...||.+++...+.
T Consensus 228 r~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 228 RDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred HHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 7788877766543 234688888887654
No 125
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.62 E-value=5e-14 Score=132.78 Aligned_cols=207 Identities=15% Similarity=0.171 Sum_probs=132.2
Q ss_pred cCCCCCccccc-C-chHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC---CceEEeeh
Q psy15151 171 ERPTEQYSDIG-G-LDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK---STFLKLAG 245 (431)
Q Consensus 171 ~~~~~~~~~i~-G-~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~---~~~i~i~~ 245 (431)
-.+..+|++.+ | ...++..+...... ..+.+++||||||||||+|++++++... ..+.+++.
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 44566788876 4 34444444443321 1335799999999999999999998643 44555555
Q ss_pred hhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe-
Q psy15151 246 PQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT- 324 (431)
Q Consensus 246 ~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt- 324 (431)
...... ...+.+.... ..+|+|||++.+.+ +...+..+..+++.+.. .++..+|+|+
T Consensus 82 ~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~e---~g~~~li~ts~ 139 (235)
T PRK08084 82 DKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRILE---SGRTRLLITGD 139 (235)
T ss_pred HHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHHH---cCCCeEEEeCC
Confidence 443221 1122222222 25899999999843 33455667777766432 2333355555
Q ss_pred CCCCC---CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHHhcCCC--CCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy15151 325 NRVDI---LDPALLRSGRLD--RKIEFPHPNEEARARIMQIHSRKMNV--SPDVNYEELSRSTDDFNGAQCKAVCVEAGM 397 (431)
Q Consensus 325 n~~~~---l~~~l~r~gR~~--~~i~~~~p~~~~r~~Il~~~l~~~~~--~~~~~~~~la~~~~g~s~~di~~l~~~A~~ 397 (431)
+.|.. +.|.+++ |+. .++.+.+|+.+++.++++..+...++ ++++ ++.|+.+.. -+.+.+..++.....
T Consensus 140 ~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v-~~~L~~~~~-~d~r~l~~~l~~l~~ 215 (235)
T PRK08084 140 RPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDV-GRFLLKRLD-REMRTLFMTLDQLDR 215 (235)
T ss_pred CChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhhc-CCHHHHHHHHHHHHH
Confidence 45544 5789999 775 79999999999999999886655433 3333 667777666 456778888887654
Q ss_pred HHHHhCCCCcCHHHHHHHHH
Q psy15151 398 IALRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 398 ~A~~~~~~~It~ed~~~Al~ 417 (431)
.+...+ ..||.+.+.+++.
T Consensus 216 ~~l~~~-~~it~~~~k~~l~ 234 (235)
T PRK08084 216 ASITAQ-RKLTIPFVKEILK 234 (235)
T ss_pred HHHhcC-CCCCHHHHHHHHc
Confidence 444444 4499988888763
No 126
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=3.5e-14 Score=142.71 Aligned_cols=209 Identities=16% Similarity=0.213 Sum_probs=138.8
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh----
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL---- 248 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l---- 248 (431)
.+.+|++++|++..++.+...+... ..+.++|||||||+|||++|+++++.+..+.....+..+
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 3678999999999999998887642 134689999999999999999999986542211100000
Q ss_pred --hHhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q psy15151 249 --VQMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIA 322 (431)
Q Consensus 249 --~~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ 322 (431)
...........++.+++.+.. ..+.||+|||+|.+ +...++.++..++. .....++|+
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l-----------~~~~~~~ll~~le~-----~~~~~~~Il 143 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHML-----------SSAAFNAFLKTLEE-----PPAHAIFIL 143 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhc-----------CHHHHHHHHHHHhC-----CCCceEEEE
Confidence 000011223556667766543 23579999999988 33334455544432 234566777
Q ss_pred EeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q psy15151 323 ATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALR 401 (431)
Q Consensus 323 ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~ 401 (431)
+++.+..+.+++.+ |+ ..+.|++|+.++...++...+.+.++. ++..+..++..+. .+.+.+.+.+......+
T Consensus 144 ~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~-gdlr~~~~~lekl~~y~-- 217 (367)
T PRK14970 144 ATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKAD-GALRDALSIFDRVVTFC-- 217 (367)
T ss_pred EeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC-CCHHHHHHHHHHHHHhc--
Confidence 88888889999988 76 468999999999999998877765543 2333666776654 35566666666555443
Q ss_pred hCCCCcCHHHHHHHHH
Q psy15151 402 RGAAIVTHEDFMDAIM 417 (431)
Q Consensus 402 ~~~~~It~ed~~~Al~ 417 (431)
+.. ||.+++...+.
T Consensus 218 -~~~-it~~~v~~~~~ 231 (367)
T PRK14970 218 -GKN-ITRQAVTENLN 231 (367)
T ss_pred -CCC-CCHHHHHHHhC
Confidence 223 77777665543
No 127
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=2.3e-14 Score=148.15 Aligned_cols=201 Identities=20% Similarity=0.221 Sum_probs=143.1
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-------------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST------------- 239 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~------------- 239 (431)
.+.+|++|+|++..++.+...+... ..++.+|||||+|+|||++|+++|+.+.+.
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 3678999999999999998887632 134667999999999999999999976321
Q ss_pred -----------eEEeehhhhhHhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 240 -----------FLKLAGPQLVQMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 240 -----------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
++.++++. ..+...++.+...+.. +...|++|||+|.+ +.+.++.|+.
T Consensus 77 C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~NALLK 139 (535)
T PRK08451 77 CQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAFNALLK 139 (535)
T ss_pred HHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHHHHH
Confidence 11221110 0113455655554332 23469999999998 6677788877
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~ 383 (431)
.|++ .+..+.+|++|+.+..+.+++++ |. ..+.|.+++.++....+...+...++.- +..+..|+..+. .
T Consensus 140 ~LEE-----pp~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~-G 210 (535)
T PRK08451 140 TLEE-----PPSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGN-G 210 (535)
T ss_pred HHhh-----cCCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 7776 34567788888888999999999 86 6899999999999999988887655442 233556666655 4
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDA 415 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~A 415 (431)
+.+++.+++..+...+ ...||.+++.+.
T Consensus 211 dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 211 SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 7788888888777554 234666666544
No 128
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.62 E-value=8.1e-15 Score=156.51 Aligned_cols=220 Identities=24% Similarity=0.273 Sum_probs=151.0
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc-------------------
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT------------------- 236 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~------------------- 236 (431)
.|..|+|++..+..+.-.+..+ ...+|||.||+|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4789999999998876655532 22579999999999999999999887
Q ss_pred ----------------CCceEEeehhhhhHhhhcch--HHHH--------HHHHHHHHhCCCeEEEEccccccccCCCCC
Q psy15151 237 ----------------KSTFLKLAGPQLVQMFIGDG--AKLV--------RDAFALAKEKAPAIIFIDELDAIGTKRFDS 290 (431)
Q Consensus 237 ----------------~~~~i~i~~~~l~~~~~g~~--~~~~--------~~lf~~a~~~~p~vl~iDEid~l~~~r~~~ 290 (431)
..+|+.+.++.....++|.. ...+ ..++..+ ..+|||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-------
Confidence 24677766654444444431 1101 1122222 2359999999998
Q ss_pred CCcCcHHHHHHHHHHHHhhc------CC--CCCCCeEEEEEeCCC-CCCChhhhcCCCcceEEEcCCCC-HHHHHHHHHH
Q psy15151 291 EKAGDREVQRTMLELLNQLD------GF--SSTADIKVIAATNRV-DILDPALLRSGRLDRKIEFPHPN-EEARARIMQI 360 (431)
Q Consensus 291 ~~~~~~~~~~~l~~lL~~~~------~~--~~~~~v~vI~ttn~~-~~l~~~l~r~gR~~~~i~~~~p~-~~~r~~Il~~ 360 (431)
+...+..|+++++... +. ....++.+|+|+|.. ..+.++|+. ||+..|.++.+. .+++.+++..
T Consensus 139 ----~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 ----DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ----CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 8888999999987531 11 123578899999964 358889999 999999998774 5677777764
Q ss_pred HHhc-------------------------------CCCCCCCCHHHHHHHc--CCC-CHHHHHHHHHHHHHHHHHhCCCC
Q psy15151 361 HSRK-------------------------------MNVSPDVNYEELSRST--DDF-NGAQCKAVCVEAGMIALRRGAAI 406 (431)
Q Consensus 361 ~l~~-------------------------------~~~~~~~~~~~la~~~--~g~-s~~di~~l~~~A~~~A~~~~~~~ 406 (431)
.... ..++ +..+..++..+ .|. +.+-...+++-|...|..+++..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is-~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~ 291 (633)
T TIGR02442 213 RLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRIS-DSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRR 291 (633)
T ss_pred HHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCc
Confidence 3210 0111 11123333322 223 34445567888889999999999
Q ss_pred cCHHHHHHHHHHHHHhhhc
Q psy15151 407 VTHEDFMDAIMEVQAKKKA 425 (431)
Q Consensus 407 It~ed~~~Al~~~~~~~~~ 425 (431)
|+.+|+..|+..+..++..
T Consensus 292 V~~~Dv~~A~~lvL~hR~~ 310 (633)
T TIGR02442 292 VTAEDVREAAELVLPHRRR 310 (633)
T ss_pred CCHHHHHHHHHHHhhhhcc
Confidence 9999999999999988764
No 129
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.62 E-value=1.4e-14 Score=142.58 Aligned_cols=221 Identities=22% Similarity=0.248 Sum_probs=147.5
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc-------CCceE-------
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT-------KSTFL------- 241 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~-------~~~~i------- 241 (431)
.|..|+|+++.+..+.-.+..| ...+++|.|+||+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4889999999999886655532 34789999999999999999999865 22211
Q ss_pred --Eeehhhh----------------hH--------hhhcchH--HH--------HHHHHHHHHhCCCeEEEEcccccccc
Q psy15151 242 --KLAGPQL----------------VQ--------MFIGDGA--KL--------VRDAFALAKEKAPAIIFIDELDAIGT 285 (431)
Q Consensus 242 --~i~~~~l----------------~~--------~~~g~~~--~~--------~~~lf~~a~~~~p~vl~iDEid~l~~ 285 (431)
..+|... .. .++|... .. ...++..+. ..+||+||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L-- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLL-- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhC--
Confidence 1111110 00 1111100 00 011222222 359999999998
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHhh------cCC--CCCCCeEEEEEeCCCC-CCChhhhcCCCcceEEEcCCCCH-HHHH
Q psy15151 286 KRFDSEKAGDREVQRTMLELLNQL------DGF--SSTADIKVIAATNRVD-ILDPALLRSGRLDRKIEFPHPNE-EARA 355 (431)
Q Consensus 286 ~r~~~~~~~~~~~~~~l~~lL~~~------~~~--~~~~~v~vI~ttn~~~-~l~~~l~r~gR~~~~i~~~~p~~-~~r~ 355 (431)
++..|..|+++++.. ++. ....++++|+|+|..+ .++++++. ||...+.++.|.. +++.
T Consensus 144 ---------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 144 ---------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRV 212 (337)
T ss_pred ---------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHH
Confidence 788999999998763 111 1235788888888655 68999999 9999999998876 8888
Q ss_pred HHHHHHHhcC----C----CC-----------------CCCC-----HHHH---HHHcCCCCHHHHHHHHHHHHHHHHHh
Q psy15151 356 RIMQIHSRKM----N----VS-----------------PDVN-----YEEL---SRSTDDFNGAQCKAVCVEAGMIALRR 402 (431)
Q Consensus 356 ~Il~~~l~~~----~----~~-----------------~~~~-----~~~l---a~~~~g~s~~di~~l~~~A~~~A~~~ 402 (431)
+|++...... . .. .++. ..++ +..+..-+.+--..+++.|...|..+
T Consensus 213 eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~ 292 (337)
T TIGR02030 213 EIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE 292 (337)
T ss_pred HHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc
Confidence 9988743210 0 00 1111 2222 23333224455567788999999999
Q ss_pred CCCCcCHHHHHHHHHHHHHhhhc
Q psy15151 403 GAAIVTHEDFMDAIMEVQAKKKA 425 (431)
Q Consensus 403 ~~~~It~ed~~~Al~~~~~~~~~ 425 (431)
++..|+.+|+..+..-+..++..
T Consensus 293 GR~~V~~dDv~~~a~~vL~HR~~ 315 (337)
T TIGR02030 293 GRTEVTVDDIRRVAVLALRHRLR 315 (337)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999999988764
No 130
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=5.9e-14 Score=143.51 Aligned_cols=192 Identities=14% Similarity=0.236 Sum_probs=127.0
Q ss_pred CCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFD 289 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~ 289 (431)
.+++||||+|+|||+|++++++.+ +..++++++..+...+...........|.... ..+.+|+|||++.+.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k--- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK--- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC---
Confidence 579999999999999999999864 67888898877765443221111112233322 34569999999998433
Q ss_pred CCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC-CC---CCChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHHh
Q psy15151 290 SEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR-VD---ILDPALLRSGRLD--RKIEFPHPNEEARARIMQIHSR 363 (431)
Q Consensus 290 ~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~-~~---~l~~~l~r~gR~~--~~i~~~~p~~~~r~~Il~~~l~ 363 (431)
...+..+..+++.+.. .+. .+|+|+|. |. .+++.+.+ ||. ..+.+++|+.+++..|++..+.
T Consensus 218 ------~~~qeelf~l~N~l~~---~~k-~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 218 ------GATQEEFFHTFNSLHT---EGK-LIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred ------hhhHHHHHHHHHHHHH---CCC-cEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 2345666677665432 123 35555554 43 46788888 884 7999999999999999999887
Q ss_pred cCCCCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHh-CCCCcCHHHHHHHHHHHHH
Q psy15151 364 KMNVSP-DVNYEELSRSTDDFNGAQCKAVCVEAGM-IALRR-GAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 364 ~~~~~~-~~~~~~la~~~~g~s~~di~~l~~~A~~-~A~~~-~~~~It~ed~~~Al~~~~~ 421 (431)
..++.- +..++.|+.... .+.+++...+...+. .|... ....||.+++.+++..+..
T Consensus 286 ~~~~~l~~evl~~la~~~~-~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 286 ALSIRIEETALDFLIEALS-SNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred HcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 765432 222555767655 345667666665542 12222 2345888888888887643
No 131
>KOG0989|consensus
Probab=99.61 E-value=1.5e-14 Score=136.04 Aligned_cols=174 Identities=22% Similarity=0.303 Sum_probs=123.5
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-e-----EEeehh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST-F-----LKLAGP 246 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~-~-----i~i~~~ 246 (431)
.+.+|+++.|++..++.+..++.. . ...++|||||||||||+.|+++|+++..+ . ...+.+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-~------------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-R------------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-c------------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 367899999999999999998875 1 23579999999999999999999998762 1 122222
Q ss_pred hhhHhhhcchHHHHHHHHHHHHhC---------C-CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCC
Q psy15151 247 QLVQMFIGDGAKLVRDAFALAKEK---------A-PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTA 316 (431)
Q Consensus 247 ~l~~~~~g~~~~~~~~lf~~a~~~---------~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~ 316 (431)
+.....++ ...+ .-|+..... + +-|++|||.|.| ..+.+..|...++. ...
T Consensus 98 derGisvv--r~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~-----~s~ 158 (346)
T KOG0989|consen 98 DERGISVV--REKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMED-----FSR 158 (346)
T ss_pred ccccccch--hhhh-cCHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhc-----ccc
Confidence 21111110 0011 122222221 1 379999999999 67888888888865 346
Q ss_pred CeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHHcC
Q psy15151 317 DIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDV-NYEELSRSTD 381 (431)
Q Consensus 317 ~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~~~ 381 (431)
.+.+|+.+|..+.+.+.+.+ |+ ..+.|+++..+.....++....+-++.-+. .++.|+..+.
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~ 221 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISD 221 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 77899999999999999999 88 468899999888888888887766655222 2566777544
No 132
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=2.9e-14 Score=149.39 Aligned_cols=208 Identities=15% Similarity=0.163 Sum_probs=141.8
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc-------eEEe-e
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST-------FLKL-A 244 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~-------~i~i-~ 244 (431)
.+.+|++|+|++..+..+..++... ..++.+|||||+|+|||++|+++|+.+.+. .-.+ +
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 3678999999999999999888642 134679999999999999999999987642 1000 1
Q ss_pred hhhhhHh-------hhcc---hHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 245 GPQLVQM-------FIGD---GAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 245 ~~~l~~~-------~~g~---~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
|..+... +-|. +...++.+.+.+.. ..+.|++|||+|.+ +...++.|+..+++
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~~a~naLLK~LEe-- 145 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SNSAFNALLKTIEE-- 145 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CHHHHHHHHHhhcc--
Confidence 1111000 1111 23345555544332 44679999999998 45555666555543
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHH
Q psy15151 311 GFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCK 389 (431)
Q Consensus 311 ~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~ 389 (431)
.+..+++|++|+.+..+.+++++ |+. .+.|.+++.++..+.++..+...++. ++..+..|+..+.| +.+++.
T Consensus 146 ---pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~al 218 (563)
T PRK06647 146 ---PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAY 218 (563)
T ss_pred ---CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 45678888888888889999998 874 78999999999999998887665544 22235566666554 667787
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 390 AVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 390 ~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
+++..+...+ ...|+.+++..++
T Consensus 219 slLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 219 TLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHhhc----CCCCCHHHHHHHh
Confidence 8777665432 2457877766643
No 133
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.60 E-value=5.5e-14 Score=138.27 Aligned_cols=201 Identities=21% Similarity=0.270 Sum_probs=134.9
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC-----CceEEeehhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK-----STFLKLAGPQ 247 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~-----~~~i~i~~~~ 247 (431)
.+.+|++++|++++++.+..++... ...+++|+||||||||++++++++.+. ..++.+++++
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 3578999999999999998887531 223589999999999999999999863 2455554432
Q ss_pred hhHhhhcchHHHHHHH-HHHHHh-----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15151 248 LVQMFIGDGAKLVRDA-FALAKE-----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321 (431)
Q Consensus 248 l~~~~~g~~~~~~~~l-f~~a~~-----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI 321 (431)
.. ....++.. ...+.. ..+.+|+|||+|.+ ..+.+..|..+++.. ..++.+|
T Consensus 79 ~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~~lI 136 (319)
T PRK00440 79 ER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNL-----------TSDAQQALRRTMEMY-----SQNTRFI 136 (319)
T ss_pred cc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccC-----------CHHHHHHHHHHHhcC-----CCCCeEE
Confidence 11 11112121 222221 23569999999998 444556666666542 2345677
Q ss_pred EEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy15151 322 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIAL 400 (431)
Q Consensus 322 ~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~ 400 (431)
+++|.+..+.+++.+ |+. .+.|++++.++...++..+++..++. ++..+..++..+.| +.+.+.+.++.+...
T Consensus 137 l~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~~-- 210 (319)
T PRK00440 137 LSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAAT-- 210 (319)
T ss_pred EEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc--
Confidence 788888888888888 775 68999999999999999988766543 22336677776553 445555555544332
Q ss_pred HhCCCCcCHHHHHHHHH
Q psy15151 401 RRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 401 ~~~~~~It~ed~~~Al~ 417 (431)
...||.+++..++.
T Consensus 211 ---~~~it~~~v~~~~~ 224 (319)
T PRK00440 211 ---GKEVTEEAVYKITG 224 (319)
T ss_pred ---CCCCCHHHHHHHhC
Confidence 35688888877654
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=5.8e-14 Score=144.02 Aligned_cols=207 Identities=18% Similarity=0.234 Sum_probs=136.7
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce---------EEee
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF---------LKLA 244 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~---------i~i~ 244 (431)
+.+|++|+|++..+..+...+... ..++.+|||||||+|||++|+++|+.+.+.- ...+
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 578999999999999998887642 1346799999999999999999999764320 0011
Q ss_pred hhhhhHh-------hhcc---hHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 245 GPQLVQM-------FIGD---GAKLVRDAFALAK----EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 245 ~~~l~~~-------~~g~---~~~~~~~lf~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
|..+... +.|. +...++.+.+.+. ...+.|++|||+|.+ ..+.++.|+..++.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~l-----------t~~~~n~LLk~lEe-- 147 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHML-----------TKEAFNSLLKTLEE-- 147 (451)
T ss_pred HHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh-----------CHHHHHHHHHHhhc--
Confidence 1111000 1111 1233444333332 245689999999998 45556666666654
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHH
Q psy15151 311 GFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCK 389 (431)
Q Consensus 311 ~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~ 389 (431)
....+++|++||.+..+.+.+++ |+ ..+.|++++.++....+...+++.+.. ++..+..|+..+.| +.+.+.
T Consensus 148 ---p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~ 220 (451)
T PRK06305 148 ---PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAE 220 (451)
T ss_pred ---CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 34577788888888899999998 87 479999999999999998887765543 22235667776643 455555
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 390 AVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 390 ~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
+.+...... .+ ..|+.+++.+++
T Consensus 221 ~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 221 SLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 555544332 12 337777665543
No 135
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3e-14 Score=144.42 Aligned_cols=211 Identities=13% Similarity=0.173 Sum_probs=140.2
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce-E---------Ee
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF-L---------KL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~-i---------~i 243 (431)
+..|++|+|++..++.+...+... ..++.+||+||||+|||++|+++|+.+.+.- . .-
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 678999999999999988877632 1346799999999999999999999876521 0 00
Q ss_pred ehhh------hhH-------hhhc---chHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHH
Q psy15151 244 AGPQ------LVQ-------MFIG---DGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTML 303 (431)
Q Consensus 244 ~~~~------l~~-------~~~g---~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 303 (431)
.|.. +.. .+.| .+...++.+.+.+.. ....|++|||+|.+ +...++.|+
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l-----------~~~~~~~LL 148 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHML-----------SIAAFNAFL 148 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhC-----------CHHHHHHHH
Confidence 1110 000 0111 123455555555532 23469999999998 444556666
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCC
Q psy15151 304 ELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDD 382 (431)
Q Consensus 304 ~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g 382 (431)
..+++ ....+++|++++.+..+.+.+.+ |+. .++|++++.++....+...++..+.. ++..+..|+..+.
T Consensus 149 k~LEe-----p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~- 219 (397)
T PRK14955 149 KTLEE-----PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQ- 219 (397)
T ss_pred HHHhc-----CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 65543 34466677777777888888888 774 78999999999999888887655433 1223556666665
Q ss_pred CCHHHHHHHHHHHHHHHHH-hCCCCcCHHHHHHHH
Q psy15151 383 FNGAQCKAVCVEAGMIALR-RGAAIVTHEDFMDAI 416 (431)
Q Consensus 383 ~s~~di~~l~~~A~~~A~~-~~~~~It~ed~~~Al 416 (431)
.+.+.+.+.+..+..++.. .....|+.+++.+.+
T Consensus 220 g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 220 GSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 4567777777776655432 234578888776654
No 136
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.60 E-value=6.9e-14 Score=133.77 Aligned_cols=132 Identities=27% Similarity=0.277 Sum_probs=107.6
Q ss_pred CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC------------CCCCChhhhcCCC
Q psy15151 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR------------VDILDPALLRSGR 339 (431)
Q Consensus 272 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~------------~~~l~~~l~r~gR 339 (431)
|.||||||+|.| +-+.+..|++.|+. .-..+||++||+ |.-++..|+. |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEs------e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALES------ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhc------ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 789999999998 77777777776653 344568899996 6678888888 7
Q ss_pred cceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q psy15151 340 LDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIME 418 (431)
Q Consensus 340 ~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~ 418 (431)
+ .+|...+++.++.++|+++..+.-.+. ++..++.|+.....-|-+.--+++.-|...|.++++..|..+|+.+|..-
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 7 688888999999999999998766655 23347778887777788888889999999999999999999999999988
Q ss_pred HHHhh
Q psy15151 419 VQAKK 423 (431)
Q Consensus 419 ~~~~~ 423 (431)
+...+
T Consensus 432 F~D~k 436 (450)
T COG1224 432 FLDVK 436 (450)
T ss_pred HhhHH
Confidence 87654
No 137
>PRK05642 DNA replication initiation factor; Validated
Probab=99.60 E-value=1.7e-13 Score=128.95 Aligned_cols=180 Identities=16% Similarity=0.192 Sum_probs=122.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCC
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~ 288 (431)
..+++||||+|||||+|+++++++ .+..++++++.++.... ..+.+..... .+|+|||++.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~-- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGK-- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCC--
Confidence 367899999999999999999875 35678888888776531 1233333332 48999999987432
Q ss_pred CCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---CChhhhcCCCc--ceEEEcCCCCHHHHHHHHHHHHh
Q psy15151 289 DSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI---LDPALLRSGRL--DRKIEFPHPNEEARARIMQIHSR 363 (431)
Q Consensus 289 ~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~r~gR~--~~~i~~~~p~~~~r~~Il~~~l~ 363 (431)
+..+..|..+++.+. ..+..+||+++..|.. ..|.+.+ || ...+.+.+|+.+++..+++..+.
T Consensus 113 -------~~~~~~Lf~l~n~~~---~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 113 -------ADWEEALFHLFNRLR---DSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred -------hHHHHHHHHHHHHHH---hcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 344567888887643 2344555555544543 3688888 77 46888999999999999996665
Q ss_pred cCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q psy15151 364 KMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 364 ~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~ 417 (431)
..++. ++..++.|+.... .+.+.+..++......+...+ ..||..-+.+++.
T Consensus 181 ~~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~l~~~-~~it~~~~~~~L~ 233 (234)
T PRK05642 181 RRGLHLTDEVGHFILTRGT-RSMSALFDLLERLDQASLQAQ-RKLTIPFLKETLG 233 (234)
T ss_pred HcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcC-CcCCHHHHHHHhc
Confidence 54433 1222566666655 566788888877765555444 4589888877763
No 138
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.59 E-value=9.4e-14 Score=128.60 Aligned_cols=169 Identities=20% Similarity=0.312 Sum_probs=123.6
Q ss_pred cCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhh
Q psy15151 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQ 247 (431)
Q Consensus 171 ~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~ 247 (431)
....+.+++++|.+.+++.+.+....++... |..++||||++|||||+++|++..+. +..+|.+...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 3447889999999999999999888766543 67899999999999999999999864 56677777665
Q ss_pred hhHhhhcchHHHHHHHHHHHHhC-CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 248 LVQMFIGDGAKLVRDAFALAKEK-APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 248 l~~~~~g~~~~~~~~lf~~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
+.. +..+++.++.. .+-|||+|++--= . +....+.|-.+|+..- -..+.||+|.+|||+
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLsFe--~--------~d~~yk~LKs~LeGgl-e~~P~NvliyATSNR 150 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLSFE--E--------GDTEYKALKSVLEGGL-EARPDNVLIYATSNR 150 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCCCC--C--------CcHHHHHHHHHhcCcc-ccCCCcEEEEEecch
Confidence 532 34456665543 4679999996521 1 2223356666665421 134689999999997
Q ss_pred CCCCCh---------------------hhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC
Q psy15151 327 VDILDP---------------------ALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS 368 (431)
Q Consensus 327 ~~~l~~---------------------~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~ 368 (431)
...++. .+.-+.||..+|.|.+|+.++-.+|++.++...++.
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 443221 111134999999999999999999999999877766
No 139
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.5e-13 Score=144.93 Aligned_cols=212 Identities=12% Similarity=0.187 Sum_probs=140.8
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEE----------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLK---------- 242 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~---------- 242 (431)
...+|++|+|++..++.+...+... ..+..+||+||+|||||++|+.+|+.+.+.-..
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 3678999999999999998877632 134679999999999999999999987662100
Q ss_pred eehh------hhhH-------hhhcc---hHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHH
Q psy15151 243 LAGP------QLVQ-------MFIGD---GAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTM 302 (431)
Q Consensus 243 i~~~------~l~~-------~~~g~---~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 302 (431)
-.|. .+.. .+.|. +...++.+.+.+.. ....|++|||+|.+ +...++.|
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L-----------t~~a~naL 147 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML-----------STAAFNAF 147 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc-----------CHHHHHHH
Confidence 0111 1100 01111 23455666555532 34569999999998 44556666
Q ss_pred HHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcC
Q psy15151 303 LELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTD 381 (431)
Q Consensus 303 ~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~ 381 (431)
+..|++ ....+++|++|+.+..+.+.+.+ |. ..+.|.+++.++....+...++..+.. ++..+..|+..+.
T Consensus 148 LK~LEe-----Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 148 LKTLEE-----PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHhC-----CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 666655 34556777777778889889988 77 689999999999998888877654433 2233566776665
Q ss_pred CCCHHHHHHHHHHHHHHHHH-hCCCCcCHHHHHHHH
Q psy15151 382 DFNGAQCKAVCVEAGMIALR-RGAAIVTHEDFMDAI 416 (431)
Q Consensus 382 g~s~~di~~l~~~A~~~A~~-~~~~~It~ed~~~Al 416 (431)
| +.+++.+.+.....++.. .....|+.+++.+.+
T Consensus 220 G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 220 G-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred C-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 4 556666666655544311 124567877776654
No 140
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.57 E-value=7.2e-15 Score=148.16 Aligned_cols=211 Identities=22% Similarity=0.304 Sum_probs=140.8
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLV 249 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~ 249 (431)
...+|++|+|.+.++..+.+.+..... .+.+|||.|.+||||..+|+++++.+ +.||+.+||..+.
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A~-----------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIAK-----------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhcC-----------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 457899999999999999888776544 55889999999999999999999965 5699999997654
Q ss_pred Hh-----hhcchHH--------HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc-----C
Q psy15151 250 QM-----FIGDGAK--------LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD-----G 311 (431)
Q Consensus 250 ~~-----~~g~~~~--------~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~-----~ 311 (431)
.. ++|...+ .-..+|+.|..+ .||||||..| +...|..|+++|++-. +
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecCC
Confidence 43 3333221 134567777665 9999999998 8899999999999832 2
Q ss_pred C-CCCCCeEEEEEeCCC-------CCCChhhhcCCCcceEEEcCCCCHHHHHH----HHHHHHh----cCCCC-CCCC--
Q psy15151 312 F-SSTADIKVIAATNRV-------DILDPALLRSGRLDRKIEFPHPNEEARAR----IMQIHSR----KMNVS-PDVN-- 372 (431)
Q Consensus 312 ~-~~~~~v~vI~ttn~~-------~~l~~~l~r~gR~~~~i~~~~p~~~~r~~----Il~~~l~----~~~~~-~~~~-- 372 (431)
. ..+.+|.||+|||+. ..+...|.= |+. ++.+..|...+|.+ +...++. .++-. ..+.
T Consensus 375 t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 1 124589999999963 112222222 332 55556666655543 3344433 33322 1122
Q ss_pred -HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q psy15151 373 -YEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413 (431)
Q Consensus 373 -~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~ 413 (431)
+..|.+.-..-+.+++++++.++...+ .....|+.+|+.
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp 491 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLP 491 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcc
Confidence 444555555557799999999988633 223335555544
No 141
>PRK08727 hypothetical protein; Validated
Probab=99.57 E-value=5.2e-13 Score=125.70 Aligned_cols=179 Identities=23% Similarity=0.253 Sum_probs=118.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFD 289 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~ 289 (431)
..++|+||+|||||+|+.+++.+ .+...++++..++... +...++... .+.+|+|||++.+..+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~--- 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEALE--GRSLVALDGLESIAGQ--- 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHHh--cCCEEEEeCcccccCC---
Confidence 56999999999999999999775 3556667766554322 223344333 3459999999988543
Q ss_pred CCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC-CCCCC---ChhhhcCCCc--ceEEEcCCCCHHHHHHHHHHHHh
Q psy15151 290 SEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN-RVDIL---DPALLRSGRL--DRKIEFPHPNEEARARIMQIHSR 363 (431)
Q Consensus 290 ~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn-~~~~l---~~~l~r~gR~--~~~i~~~~p~~~~r~~Il~~~l~ 363 (431)
...+..++.+++.... .+..+|+|+| .|..+ .+.+.+ || ...+.|++|+.+++.+|++.++.
T Consensus 109 ------~~~~~~lf~l~n~~~~----~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 109 ------REDEVALFDFHNRARA----AGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred ------hHHHHHHHHHHHHHHH----cCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 2344566777776532 1333666665 55544 689998 86 56899999999999999998765
Q ss_pred cCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q psy15151 364 KMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIME 418 (431)
Q Consensus 364 ~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~ 418 (431)
..++. ++..++.|+..+. -..+.+.+++......+...++ .||.+.+.+.+..
T Consensus 177 ~~~l~l~~e~~~~La~~~~-rd~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l~~ 230 (233)
T PRK08727 177 RRGLALDEAAIDWLLTHGE-RELAGLVALLDRLDRESLAAKR-RVTVPFLRRVLEE 230 (233)
T ss_pred HcCCCCCHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHhh
Confidence 43333 1223667777665 3334455556665554555444 6999998887753
No 142
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=2.7e-13 Score=143.62 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=131.3
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEE----ee---hh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLK----LA---GP 246 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~----i~---~~ 246 (431)
...|++++|++..+..|...+... ..+.++||+||+|+|||++|+++|+.+.+.... -. |.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 578999999999999998887642 123579999999999999999999987652110 01 11
Q ss_pred ---hhh----------HhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhh
Q psy15151 247 ---QLV----------QMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL 309 (431)
Q Consensus 247 ---~l~----------~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~ 309 (431)
.+. ....+.+...++.+.+.+.. +...|++|||+|.| +.+.++.|+..|++
T Consensus 80 ~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~a~naLLK~LEe- 147 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STAAFNALLKTLEE- 147 (620)
T ss_pred HHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHHHHHHHHHHHhc-
Confidence 000 00112334567777776654 33579999999998 55666777666664
Q ss_pred cCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCCCHHHH
Q psy15151 310 DGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDFNGAQC 388 (431)
Q Consensus 310 ~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s~~di 388 (431)
....+++|++|+.++.+.+.+++ |+ ..+.|+.++.++....+...+.+.+..- +..+..++..+.|. .+++
T Consensus 148 ----Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~-lr~A 219 (620)
T PRK14948 148 ----PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG-LRDA 219 (620)
T ss_pred ----CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHH
Confidence 45678888888888889999998 87 5789999999888888877766544331 22256666666543 3555
Q ss_pred HHHHHHH
Q psy15151 389 KAVCVEA 395 (431)
Q Consensus 389 ~~l~~~A 395 (431)
.+++...
T Consensus 220 ~~lLekl 226 (620)
T PRK14948 220 ESLLDQL 226 (620)
T ss_pred HHHHHHH
Confidence 5555543
No 143
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=2.2e-13 Score=139.66 Aligned_cols=190 Identities=14% Similarity=0.214 Sum_probs=133.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHHc-----CCceEEeehhhhhHhhhcchHH---HHHHHHHHHHhCCCeEEEEccccccc
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQT-----KSTFLKLAGPQLVQMFIGDGAK---LVRDAFALAKEKAPAIIFIDELDAIG 284 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~-----~~~~i~i~~~~l~~~~~g~~~~---~~~~lf~~a~~~~p~vl~iDEid~l~ 284 (431)
.+++|||++|+|||+|++++++.+ +..++++++.++...+...... .+....... ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 579999999999999999999853 4677889998887766533221 122222222 345699999999984
Q ss_pred cCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC-C---CCChhhhcCCCcc--eEEEcCCCCHHHHHHHH
Q psy15151 285 TKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV-D---ILDPALLRSGRLD--RKIEFPHPNEEARARIM 358 (431)
Q Consensus 285 ~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~-~---~l~~~l~r~gR~~--~~i~~~~p~~~~r~~Il 358 (431)
++ ...+..|..+++.+... +. .+|+|+|.+ . .+++.+.+ ||. ..+.+.+|+.++|.+|+
T Consensus 220 ~k---------~~~~e~lf~l~N~~~~~---~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 220 YK---------EKTNEIFFTIFNNFIEN---DK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred CC---------HHHHHHHHHHHHHHHHc---CC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 32 35567777888775432 22 366666643 3 35678888 774 68899999999999999
Q ss_pred HHHHhcCCCC---CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHHHH
Q psy15151 359 QIHSRKMNVS---PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG-AAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 359 ~~~l~~~~~~---~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~-~~~It~ed~~~Al~~~~ 420 (431)
+..++..++. ++..+..|+..+. .+++.+..+|..+...+.... ...||.+.+.++++++.
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~-gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYS-DDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIP 349 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccC-CCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcc
Confidence 9998765431 1222556666665 467889999998887766653 25689999999988764
No 144
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=3.5e-13 Score=142.86 Aligned_cols=207 Identities=15% Similarity=0.196 Sum_probs=137.3
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEE---ee---h-
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLK---LA---G- 245 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~---i~---~- 245 (431)
...+|++|+|++..++.|...+... ..++.+||+||+|+|||++|+++|+.+.+..-. -. |
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 4678999999999999998877632 134568999999999999999999987542210 00 1
Q ss_pred --hhhhHh----h------hcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhh
Q psy15151 246 --PQLVQM----F------IGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL 309 (431)
Q Consensus 246 --~~l~~~----~------~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~ 309 (431)
..+... + .......++.+.+.+.. ..+.||||||+|.| +.+.++.|+..|++
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L-----------~~~a~naLLk~LEe- 146 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHML-----------STAAFNALLKTLEE- 146 (585)
T ss_pred HHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC-----------CHHHHHHHHHHHhc-
Confidence 111000 0 01123344555544433 33579999999998 44555666666554
Q ss_pred cCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCCCHHHH
Q psy15151 310 DGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDFNGAQC 388 (431)
Q Consensus 310 ~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s~~di 388 (431)
....+++|++++..+.+.+.+.+ |+ ..+.|+.++..+...++...+...++.- +..+..|+..+.| +.+++
T Consensus 147 ----pp~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~a 218 (585)
T PRK14950 147 ----PPPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDA 218 (585)
T ss_pred ----CCCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 23567777778878888888888 77 4689999999999999988877655431 2225566666654 66777
Q ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHH
Q psy15151 389 KAVCVEAGMIALRRGAAIVTHEDFMDA 415 (431)
Q Consensus 389 ~~l~~~A~~~A~~~~~~~It~ed~~~A 415 (431)
.+.+.....+ ....|+.+++...
T Consensus 219 l~~LekL~~y----~~~~It~e~V~~l 241 (585)
T PRK14950 219 ENLLQQLATT----YGGEISLSQVQSL 241 (585)
T ss_pred HHHHHHHHHh----cCCCCCHHHHHHH
Confidence 7776654432 2346888877654
No 145
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.55 E-value=1.6e-13 Score=145.26 Aligned_cols=137 Identities=24% Similarity=0.341 Sum_probs=93.1
Q ss_pred eEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc----CC------------CCCCCeEEEEEeCCC--CCCChhh
Q psy15151 273 AIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD----GF------------SSTADIKVIAATNRV--DILDPAL 334 (431)
Q Consensus 273 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~----~~------------~~~~~v~vI~ttn~~--~~l~~~l 334 (431)
++|||||++.| +++.|..|.++|+.-. +. .-+.++.+|+++|.. ..++|+|
T Consensus 219 GtL~Ldei~~L-----------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l 287 (608)
T TIGR00764 219 GVLYIDEIKTM-----------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPAL 287 (608)
T ss_pred CEEEEEChHhC-----------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHH
Confidence 68888888888 6788899999987622 10 112478899999964 5799999
Q ss_pred hcCCCcc---eEEEcCC---CCHHHHHHHHHH---HHhcCCCCCCCCH---HHHHHHc---C------CCCHHHHHHHHH
Q psy15151 335 LRSGRLD---RKIEFPH---PNEEARARIMQI---HSRKMNVSPDVNY---EELSRST---D------DFNGAQCKAVCV 393 (431)
Q Consensus 335 ~r~gR~~---~~i~~~~---p~~~~r~~Il~~---~l~~~~~~~~~~~---~~la~~~---~------g~s~~di~~l~~ 393 (431)
+. ||+ ..+.|+. .+.+.+.++++. .+++.+..+..+- ..|.+.. . ..+.++|.++|+
T Consensus 288 ~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR 365 (608)
T TIGR00764 288 RS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVR 365 (608)
T ss_pred HH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHH
Confidence 99 998 6666653 345556555443 3333322223333 3333211 1 135699999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q psy15151 394 EAGMIALRRGAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 394 ~A~~~A~~~~~~~It~ed~~~Al~~~~~~ 422 (431)
.|...|..++...|+.+|+.+|++.....
T Consensus 366 ~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~ 394 (608)
T TIGR00764 366 AAGDIAKSSGKVYVTAEHVLKAKKLAKTL 394 (608)
T ss_pred HHHHHHHhcCCceecHHHHHHHHHHHHHH
Confidence 99888888888999999999998876553
No 146
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.55 E-value=1.2e-13 Score=141.36 Aligned_cols=208 Identities=17% Similarity=0.224 Sum_probs=150.6
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce--EE---eehh-
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF--LK---LAGP- 246 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~--i~---i~~~- 246 (431)
.+..|++++|++..+..|..++..-. -...+||.||.|||||++||.+|..+++.- .. ..|.
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~r------------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENGR------------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhCc------------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 46789999999999999999887531 346899999999999999999999876542 11 1111
Q ss_pred --hhhHh----------hhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 247 --QLVQM----------FIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 247 --~l~~~----------~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
++... -...+-..+|.+.+.+.- +.+.|.+|||+|.| +...++.|+.-|++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~afNALLKTLEE-- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAFNALLKTLEE-- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHHHHHhccccc--
Confidence 11110 011244556777776644 34679999999998 55555555555544
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCC-HHHHHHHcCCCCHHHHH
Q psy15151 311 GFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVN-YEELSRSTDDFNGAQCK 389 (431)
Q Consensus 311 ~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-~~~la~~~~g~s~~di~ 389 (431)
.+.+|++|++|..+..+++.+++ |+ ..+.|...+.++....+...+.+-++..+.+ +..|+.... .+.+|..
T Consensus 146 ---PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~-Gs~RDal 218 (515)
T COG2812 146 ---PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAE-GSLRDAL 218 (515)
T ss_pred ---CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcC-CChhhHH
Confidence 67889999999999999999999 87 5788999999999999999998777764433 445555555 4569999
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 390 AVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 390 ~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
+++.+|..... ..|+.+.+...+
T Consensus 219 slLDq~i~~~~----~~It~~~v~~~l 241 (515)
T COG2812 219 SLLDQAIAFGE----GEITLESVRDML 241 (515)
T ss_pred HHHHHHHHccC----CcccHHHHHHHh
Confidence 99988876642 445555554433
No 147
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.54 E-value=2.1e-13 Score=140.90 Aligned_cols=212 Identities=24% Similarity=0.341 Sum_probs=140.4
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc------------------
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT------------------ 236 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~------------------ 236 (431)
..|.+|.|++..++.+.-++. .+.+++|+||||||||+++++++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~---------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA---------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc---------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 478999999988776654432 45789999999999999999998632
Q ss_pred ----------CCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHH
Q psy15151 237 ----------KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELL 306 (431)
Q Consensus 237 ----------~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL 306 (431)
..||...+++......+|.+.......+..|.. +||||||++.+ ++.++..|.+.|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----------~~~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----------KRSVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----------CHHHHHHHHHHH
Confidence 123444443333333333322112223444433 49999999998 788899999988
Q ss_pred Hhhc--------CCCCCCCeEEEEEeCCC------C-----------------CCChhhhcCCCcceEEEcCCCCHHHH-
Q psy15151 307 NQLD--------GFSSTADIKVIAATNRV------D-----------------ILDPALLRSGRLDRKIEFPHPNEEAR- 354 (431)
Q Consensus 307 ~~~~--------~~~~~~~v~vI~ttn~~------~-----------------~l~~~l~r~gR~~~~i~~~~p~~~~r- 354 (431)
+.-. ......++.+|+++|.. + .+...|+. |||..+.++.++..+.
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLL 397 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHh
Confidence 7532 11123578999999962 1 47788888 9999999998755432
Q ss_pred ------------HHHHH------HHHhcC---CCCCCCCHH-------------HH---HHHcCCCCHHHHHHHHHHHHH
Q psy15151 355 ------------ARIMQ------IHSRKM---NVSPDVNYE-------------EL---SRSTDDFNGAQCKAVCVEAGM 397 (431)
Q Consensus 355 ------------~~Il~------~~l~~~---~~~~~~~~~-------------~l---a~~~~g~s~~di~~l~~~A~~ 397 (431)
..+.+ ..++.. .+...+.-. .+ +....++|.+-...+++-|..
T Consensus 398 ~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArT 477 (499)
T TIGR00368 398 STGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVART 477 (499)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 22222 111111 111111111 11 112345788999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHH
Q psy15151 398 IALRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 398 ~A~~~~~~~It~ed~~~Al~ 417 (431)
.|..++...|+.+|+.+|+.
T Consensus 478 iAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 478 IADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHhhcCCCCCCHHHHHHHHh
Confidence 99999999999999999985
No 148
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=7.3e-13 Score=140.38 Aligned_cols=201 Identities=16% Similarity=0.251 Sum_probs=140.4
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc--------------
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST-------------- 239 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~-------------- 239 (431)
..+|++|+|++..++.+..++... ..++.+|||||+|+|||++|+.+|..+.+.
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 578999999999999999887642 134679999999999999999999986532
Q ss_pred -----------eEEeehhhhhHhhhcchHHHHHHHHHHHHhC----CCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 240 -----------FLKLAGPQLVQMFIGDGAKLVRDAFALAKEK----APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 240 -----------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
++.+++.. ......++.+.+.+... .+.|++|||+|.| +.+.++.|+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~~a~naLLK 143 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQAAFNAFLK 143 (614)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CHHHHHHHHH
Confidence 11222110 01234566666555443 3569999999998 5566777777
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~ 383 (431)
.|++ ....+++|++|+.+..+-+.+++ |+ ..+.|.+++.++....+...+...++.-+ ..+..|+..+. .
T Consensus 144 ~LEe-----pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~-g 214 (614)
T PRK14971 144 TLEE-----PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD-G 214 (614)
T ss_pred HHhC-----CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 7765 34567788888888899999998 77 56999999999999999888777665422 23566777664 4
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
+.+++.+.+.....++ +.. |+.+++.+.+
T Consensus 215 dlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 215 GMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred CHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 5566666666554443 222 6666555443
No 149
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.53 E-value=5.3e-13 Score=135.23 Aligned_cols=222 Identities=16% Similarity=0.185 Sum_probs=141.9
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehh-hhhHh
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGP-QLVQM 251 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~-~l~~~ 251 (431)
..-..|+|.++.++.+..++. ...++||+||||||||++|++++...+. +|..+.+. .....
T Consensus 17 ~l~~~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~D 81 (498)
T PRK13531 17 ALEKGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEE 81 (498)
T ss_pred HHhhhccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHH
Confidence 345678999999999877665 5689999999999999999999997643 44444332 12233
Q ss_pred hhcch-HHHH--HHHHHHHHhC---CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc----CCCCC-CCeEE
Q psy15151 252 FIGDG-AKLV--RDAFALAKEK---APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD----GFSST-ADIKV 320 (431)
Q Consensus 252 ~~g~~-~~~~--~~lf~~a~~~---~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~----~~~~~-~~v~v 320 (431)
.+|.. -... ...|.....+ ...+||+|||..+ ++..+..|++++++-. +.... ...++
T Consensus 82 LfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfi 150 (498)
T PRK13531 82 VFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLL 150 (498)
T ss_pred hcCcHHHhhhhhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEE
Confidence 34431 1110 1223222222 1249999999987 8889999999997733 11111 22345
Q ss_pred EEEeCCCC---CCChhhhcCCCcceEEEcCCCC-HHHHHHHHHHHHhc--CCC--CCCCC--------------------
Q psy15151 321 IAATNRVD---ILDPALLRSGRLDRKIEFPHPN-EEARARIMQIHSRK--MNV--SPDVN-------------------- 372 (431)
Q Consensus 321 I~ttn~~~---~l~~~l~r~gR~~~~i~~~~p~-~~~r~~Il~~~l~~--~~~--~~~~~-------------------- 372 (431)
++|||... .+.+++.. ||-..+.+|+|+ .++..+|+...... ... ..-+.
T Consensus 151 v~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v 228 (498)
T PRK13531 151 VTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHV 228 (498)
T ss_pred EEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHH
Confidence 55667432 23358888 998899999997 45667777653221 111 10011
Q ss_pred HHH---HHHH---c---CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhc
Q psy15151 373 YEE---LSRS---T---DDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKA 425 (431)
Q Consensus 373 ~~~---la~~---~---~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~~ 425 (431)
.+. |... + ...|++--..+++.|...|...|+..|+.+|+. .+..+..++..
T Consensus 229 ~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HRl~ 289 (498)
T PRK13531 229 FELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHDAQ 289 (498)
T ss_pred HHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccCHH
Confidence 122 2221 1 125777788888999999999999999999999 77777665543
No 150
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.52 E-value=2.6e-13 Score=116.47 Aligned_cols=141 Identities=43% Similarity=0.673 Sum_probs=97.2
Q ss_pred CchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhhhcchHH
Q psy15151 182 GLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMFIGDGAK 258 (431)
Q Consensus 182 G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~~g~~~~ 258 (431)
|.+..+..+...+... .+.+++++||||||||++++.++... +.+++.+++.............
T Consensus 2 ~~~~~~~~i~~~~~~~-------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREALELP-------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 5666777776665431 45789999999999999999999987 8889999988765543322111
Q ss_pred H---HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC-CCCCCeEEEEEeCCCC--CCCh
Q psy15151 259 L---VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF-SSTADIKVIAATNRVD--ILDP 332 (431)
Q Consensus 259 ~---~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~-~~~~~v~vI~ttn~~~--~l~~ 332 (431)
. ....+.......+.+|+|||++.+ .......+.+++...... ....++.+|+++|... .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSL-----------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhh-----------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1 112233344556789999999987 334445566666554221 1136788999998877 6778
Q ss_pred hhhcCCCcceEEEcCC
Q psy15151 333 ALLRSGRLDRKIEFPH 348 (431)
Q Consensus 333 ~l~r~gR~~~~i~~~~ 348 (431)
.+.+ ||+.++.+++
T Consensus 138 ~~~~--r~~~~i~~~~ 151 (151)
T cd00009 138 ALYD--RLDIRIVIPL 151 (151)
T ss_pred hHHh--hhccEeecCC
Confidence 8888 9988887763
No 151
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.52 E-value=9.8e-14 Score=136.93 Aligned_cols=193 Identities=23% Similarity=0.272 Sum_probs=127.5
Q ss_pred ccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHh-----
Q psy15151 180 IGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQM----- 251 (431)
Q Consensus 180 i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~----- 251 (431)
++|.+..++.+.+.+..... ...+|||+|++||||+++|++++... +.||+.++|..+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~-----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 57888888888888776543 44789999999999999999999865 369999999765322
Q ss_pred hhcchHHH-------HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC------CCCCCCe
Q psy15151 252 FIGDGAKL-------VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG------FSSTADI 318 (431)
Q Consensus 252 ~~g~~~~~-------~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~------~~~~~~v 318 (431)
++|...+. ....|+.+. .++||||||+.| +...|..|+.+|+.... .....++
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred HhccccccccCcccccCCchhhCC---CCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 23322111 122345443 359999999999 88999999999976321 1123578
Q ss_pred EEEEEeCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHHhc----CCCC--CCCC---HHHHHHH
Q psy15151 319 KVIAATNRV-------DILDPALLRSGRLD-RKIEFPHPNE--EARARIMQIHSRK----MNVS--PDVN---YEELSRS 379 (431)
Q Consensus 319 ~vI~ttn~~-------~~l~~~l~r~gR~~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~--~~~~---~~~la~~ 379 (431)
.+|++||.. ..+.+.|.. |+. ..|.+|++.. +++..++..++.. ++.. ..++ +..|...
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 899999853 245566766 773 3566666542 3444555554432 2221 1233 4445555
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy15151 380 TDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 380 ~~g~s~~di~~l~~~A~~~A 399 (431)
....+.+++++++.+++..+
T Consensus 214 ~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 214 HWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCCchHHHHHHHHHHHHHhC
Confidence 55557788999998887765
No 152
>PRK06620 hypothetical protein; Validated
Probab=99.52 E-value=8e-13 Score=122.62 Aligned_cols=164 Identities=15% Similarity=0.219 Sum_probs=109.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEK 292 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~ 292 (431)
.+++||||||||||+|++++++..+..++. ..... ...+ ....+|+|||||.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~~-----------~~~~-----~~~d~lliDdi~~~--------- 97 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFFN-----------EEIL-----EKYNAFIIEDIENW--------- 97 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhhc-----------hhHH-----hcCCEEEEeccccc---------
Confidence 679999999999999999999987653322 11100 0111 12359999999965
Q ss_pred cCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC--CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHHhcCCCC
Q psy15151 293 AGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI--LDPALLRSGRLD--RKIEFPHPNEEARARIMQIHSRKMNVS 368 (431)
Q Consensus 293 ~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~--l~~~l~r~gR~~--~~i~~~~p~~~~r~~Il~~~l~~~~~~ 368 (431)
.. ..+..+++.+. ..+..++|+++..|.. + |++++ |+. .++.+.+|+.+.+..+++..+...++.
T Consensus 98 --~~---~~lf~l~N~~~---e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 98 --QE---PALLHIFNIIN---EKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred --hH---HHHHHHHHHHH---hcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 11 34555655543 2345666666655554 5 78888 774 489999999999999999887654433
Q ss_pred -CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 369 -PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 369 -~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
++..++.|+.... .+.+.+..++......+...+ ..||.+.+.+++
T Consensus 167 l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 167 ISRQIIDFLLVNLP-REYSKIIEILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 2223677777665 456778887777554454444 468998888775
No 153
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.51 E-value=6.1e-13 Score=123.92 Aligned_cols=170 Identities=21% Similarity=0.329 Sum_probs=111.6
Q ss_pred CCceeeCCCCCchHHHHHHHHHHc-----CCceEEeehhhhhHhhhcchHH-HHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQT-----KSTFLKLAGPQLVQMFIGDGAK-LVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~-----~~~~i~i~~~~l~~~~~g~~~~-~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
..++||||+|+|||+|+++++++. +..++++++.++...+...... .+..+.+..+ ...+|+||+++.+.+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~- 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG- 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC-
Confidence 468999999999999999999863 5678899998887765432211 1222223332 456999999999843
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHH
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI---LDPALLRSGRLD--RKIEFPHPNEEARARIMQIH 361 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~r~gR~~--~~i~~~~p~~~~r~~Il~~~ 361 (431)
....+..+..+++.+.. .+..+||.+...|.. +++.+.+ ||. ..+.+.+|+.+.|..|++..
T Consensus 112 --------~~~~q~~lf~l~n~~~~---~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 112 --------KQRTQEELFHLFNRLIE---SGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp --------HHHHHHHHHHHHHHHHH---TTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHH
T ss_pred --------chHHHHHHHHHHHHHHh---hCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHH
Confidence 33567888888887642 234444444455554 5678888 765 49999999999999999998
Q ss_pred HhcCCCCCCCC-HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 362 SRKMNVSPDVN-YEELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 362 l~~~~~~~~~~-~~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
+...++.-+.+ .+.|+.... .+.++|..++......+
T Consensus 179 a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 179 AKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 88776663222 455666554 57788888888766554
No 154
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.51 E-value=6.6e-14 Score=147.39 Aligned_cols=210 Identities=21% Similarity=0.299 Sum_probs=142.3
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhH
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQ 250 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~ 250 (431)
...++.++|.+..++.+.+.+..... ...+|||+|++|||||++|++++... +.+|+.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 35789999999999999998876543 44789999999999999999999874 46999999976633
Q ss_pred h-----hhcchHHHH-------HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC------
Q psy15151 251 M-----FIGDGAKLV-------RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF------ 312 (431)
Q Consensus 251 ~-----~~g~~~~~~-------~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~------ 312 (431)
. ++|...+.. ...|+.+ ..++||||||+.| +...|..|+++++...-.
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~~~~~ 326 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFERVGGNR 326 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEECCCCc
Confidence 2 223221110 1123333 2459999999999 888999999999763210
Q ss_pred CCCCCeEEEEEeCCC-------CCCChhhhcCCCcc-eEEEcCCCC--HHHHHHHHHHHHhcC----CCCCCCC---HHH
Q psy15151 313 SSTADIKVIAATNRV-------DILDPALLRSGRLD-RKIEFPHPN--EEARARIMQIHSRKM----NVSPDVN---YEE 375 (431)
Q Consensus 313 ~~~~~v~vI~ttn~~-------~~l~~~l~r~gR~~-~~i~~~~p~--~~~r~~Il~~~l~~~----~~~~~~~---~~~ 375 (431)
....++.+|++|+.. ..+.+.|.. |+. ..|.+|++. .++...++..++..+ +....++ +..
T Consensus 327 ~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 404 (534)
T TIGR01817 327 TLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRV 404 (534)
T ss_pred eEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 112367899998753 234555555 553 367777775 345666666665432 2112232 444
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q psy15151 376 LSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413 (431)
Q Consensus 376 la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~ 413 (431)
|.......+.+++++++..|+..+ ....|+.+|+.
T Consensus 405 L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 405 LMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 555555567789999999887654 45678888875
No 155
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.51 E-value=1.4e-13 Score=138.85 Aligned_cols=207 Identities=21% Similarity=0.290 Sum_probs=140.3
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC---CceEEeehhhhhHh
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK---STFLKLAGPQLVQM 251 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~---~~~i~i~~~~l~~~ 251 (431)
..+..++|.+..++++...+..... ...+|||+|++||||..+|++|+..+. .||+.+||..+...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~-----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAP-----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 5688999999999999998876443 457899999999999999999999764 59999999765332
Q ss_pred -----hhcchHHH-------HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc--CC----C
Q psy15151 252 -----FIGDGAKL-------VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD--GF----S 313 (431)
Q Consensus 252 -----~~g~~~~~-------~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~--~~----~ 313 (431)
++|+..+. -...|+.|..+ +||||||..+ +.+.|..|+++|++-. .. .
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcc
Confidence 45543322 12356666555 9999999998 8899999999999732 11 1
Q ss_pred CCCCeEEEEEeCCC-------CCCChhhhcCCCcceEEEcCCCCHHHHHH----HHHHHHh----cCCCC-CCCCHHHHH
Q psy15151 314 STADIKVIAATNRV-------DILDPALLRSGRLDRKIEFPHPNEEARAR----IMQIHSR----KMNVS-PDVNYEELS 377 (431)
Q Consensus 314 ~~~~v~vI~ttn~~-------~~l~~~l~r~gR~~~~i~~~~p~~~~r~~----Il~~~l~----~~~~~-~~~~~~~la 377 (431)
-+.+|.||++||.. ..+...|.- |+ .++.+..|...+|.+ ++.++++ ..+.. ..++-+.+.
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~ 349 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYY--RL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALA 349 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHh--hh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 24578999999953 223334444 44 256666666666554 4444443 33322 334444443
Q ss_pred ---HHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q psy15151 378 ---RSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDF 412 (431)
Q Consensus 378 ---~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~ 412 (431)
.+..--|.+++++++.+++..+ ....|+.+|+
T Consensus 350 ~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l 384 (464)
T COG2204 350 ALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDL 384 (464)
T ss_pred HHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhc
Confidence 3333345688888888887766 4444555553
No 156
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.51 E-value=9.1e-14 Score=134.85 Aligned_cols=140 Identities=18% Similarity=0.224 Sum_probs=106.5
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh--hhcchHHH----------HHHHHHHHHhCCCeEEEEc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM--FIGDGAKL----------VRDAFALAKEKAPAIIFID 278 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~--~~g~~~~~----------~~~lf~~a~~~~p~vl~iD 278 (431)
..+++||.||||||||++++.+|..++.++++++++..+.. ++|...-. ....+..|.. .+.+|++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 45789999999999999999999999999999998766554 45542111 1122333333 35789999
Q ss_pred cccccccCCCCCCCcCcHHHHHHHHHHHHh-----hcC----CCCCCCeEEEEEeCCCC------------CCChhhhcC
Q psy15151 279 ELDAIGTKRFDSEKAGDREVQRTMLELLNQ-----LDG----FSSTADIKVIAATNRVD------------ILDPALLRS 337 (431)
Q Consensus 279 Eid~l~~~r~~~~~~~~~~~~~~l~~lL~~-----~~~----~~~~~~v~vI~ttn~~~------------~l~~~l~r~ 337 (431)
|||.. +++++..|..+|+. +.+ +....++.||+|.|... .++.+++.
T Consensus 142 Ein~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99997 88889999999884 111 12345788999999854 26889999
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHHHhc
Q psy15151 338 GRLDRKIEFPHPNEEARARIMQIHSRK 364 (431)
Q Consensus 338 gR~~~~i~~~~p~~~~r~~Il~~~l~~ 364 (431)
||-.++.+..|+.++-.+|+......
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99888899999999999999876543
No 157
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.50 E-value=5.7e-14 Score=139.94 Aligned_cols=198 Identities=25% Similarity=0.340 Sum_probs=136.1
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhH
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQ 250 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~ 250 (431)
...+..|+|.+.++..+.+.|..... ....|||.|.+||||..+||+|+..+ ..||+.+||+.+..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~-----------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAK-----------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhc-----------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 45788999999999999999886544 45789999999999999999999975 46999999987654
Q ss_pred h-----hhcchHHHH-------HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc--CCC---
Q psy15151 251 M-----FIGDGAKLV-------RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD--GFS--- 313 (431)
Q Consensus 251 ~-----~~g~~~~~~-------~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~--~~~--- 313 (431)
. ++|+-.+.. +.-|+.|..+ .||+|||..| +..+|..|++.|++.+ ...
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r 353 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDR 353 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCC---eEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCc
Confidence 4 344432222 2345555444 9999999998 8899999999999843 221
Q ss_pred -CCCCeEEEEEeCCC-------CCCChhhhcCCCcceEEEcCCCCHHHHHH--------HHHHHHhcCCCC-C---CCCH
Q psy15151 314 -STADIKVIAATNRV-------DILDPALLRSGRLDRKIEFPHPNEEARAR--------IMQIHSRKMNVS-P---DVNY 373 (431)
Q Consensus 314 -~~~~v~vI~ttn~~-------~~l~~~l~r~gR~~~~i~~~~p~~~~r~~--------Il~~~l~~~~~~-~---~~~~ 373 (431)
-+.+|.||++||+- ..+...+.- |+. ++.+..|...+|.+ +++...++++.. . ...+
T Consensus 354 ~ikVDVRiIAATNRDL~~~V~~G~FRaDLYy--RLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al 430 (550)
T COG3604 354 TIKVDVRVIAATNRDLEEMVRDGEFRADLYY--RLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEAL 430 (550)
T ss_pred eeEEEEEEEeccchhHHHHHHcCcchhhhhh--ccc-ccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHH
Confidence 23578899999962 112222222 332 45555666665533 223333334432 1 1224
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 374 EELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 374 ~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
+.|..+..--+.+++++++.+|+..|
T Consensus 431 ~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 431 ELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 55666555557799999999999988
No 158
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.49 E-value=1.6e-12 Score=128.65 Aligned_cols=214 Identities=26% Similarity=0.283 Sum_probs=138.3
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH--hhhcc
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ--MFIGD 255 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~--~~~g~ 255 (431)
..++|.++.+..+..++. ..+++||.||||||||++|+++|..++.+|+++.|...+. ..+|.
T Consensus 24 ~~~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 24 KVVVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CeeeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCc
Confidence 347888888887766655 4588999999999999999999999999999999974322 22222
Q ss_pred hHHHH------------HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc------C-CCCCC
Q psy15151 256 GAKLV------------RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD------G-FSSTA 316 (431)
Q Consensus 256 ~~~~~------------~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~------~-~~~~~ 316 (431)
..-.. +-+|.... +|+++|||+.. ++.+++.|+++|++.. . ..-..
T Consensus 89 ~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~ 153 (329)
T COG0714 89 YAYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPP 153 (329)
T ss_pred hhHhhhhccCCeEEEecCCcccccc----eEEEEeccccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCC
Confidence 11111 01111111 49999999996 8899999999999832 2 33456
Q ss_pred CeEEEEEeC-----CCCCCChhhhcCCCcceEEEcCCCCH-HHHHHHHHHHHhcC------CCCCCCCH-----------
Q psy15151 317 DIKVIAATN-----RVDILDPALLRSGRLDRKIEFPHPNE-EARARIMQIHSRKM------NVSPDVNY----------- 373 (431)
Q Consensus 317 ~v~vI~ttn-----~~~~l~~~l~r~gR~~~~i~~~~p~~-~~r~~Il~~~l~~~------~~~~~~~~----------- 373 (431)
.++||+|+| ....++.++++ ||...+.++.|+. .+...++....... ....-+..
T Consensus 154 ~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (329)
T COG0714 154 PFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVK 231 (329)
T ss_pred CCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhc
Confidence 788999999 44568899999 9988999999944 44444444332211 00010111
Q ss_pred ---------H---HHHHHc-------CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q psy15151 374 ---------E---ELSRST-------DDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKK 423 (431)
Q Consensus 374 ---------~---~la~~~-------~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~ 423 (431)
+ .+...+ .|.+++....+...+...|...++..+..+|+.........++
T Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~~ 300 (329)
T COG0714 232 KVPVSDEVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAHR 300 (329)
T ss_pred cCCchHHHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhhhh
Confidence 0 111111 1123444555556666666667777788888777666655543
No 159
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.49 E-value=2.3e-12 Score=128.43 Aligned_cols=194 Identities=18% Similarity=0.238 Sum_probs=136.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc-----CCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT-----KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGT 285 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~-----~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~ 285 (431)
+...++||||+|.|||+|++|+++.. +..++++....++..++-+....--.-|..-. .-.+++||+|+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34679999999999999999999864 23578888888777665443333233444444 446999999999966
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHH
Q psy15151 286 KRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI---LDPALLRSGRLD--RKIEFPHPNEEARARIMQI 360 (431)
Q Consensus 286 ~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~r~gR~~--~~i~~~~p~~~~r~~Il~~ 360 (431)
+. ..+..+..+++.+.. .++-+|+.+...|.. +.|.+.+ ||. .++.+.+|+.+.|..|+..
T Consensus 190 k~---------~~qeefFh~FN~l~~---~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 190 KE---------RTQEEFFHTFNALLE---NGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred Ch---------hHHHHHHHHHHHHHh---cCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHH
Confidence 53 335566666665432 233334444445555 4588888 875 4889999999999999999
Q ss_pred HHhcCCCCCC-CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q psy15151 361 HSRKMNVSPD-VNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 361 ~l~~~~~~~~-~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~ 422 (431)
.....++.-+ .-...++.... -+.+++..++......|...++ .||.+.+.++++.+...
T Consensus 256 ka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 256 KAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 7766555522 22556666554 5778899888888888877766 68888888888877654
No 160
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-13 Score=137.41 Aligned_cols=201 Identities=23% Similarity=0.261 Sum_probs=139.2
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHH----cCCceEEeehhhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ----TKSTFLKLAGPQLV 249 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~----~~~~~i~i~~~~l~ 249 (431)
...+.+++|.+...+++++.+.... +...+||++|++||||+.+|+.|+.. .+.||+.+||..+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~a-----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYA-----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhC-----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 5678999999999999999988621 24578999999999999999999864 35699999998875
Q ss_pred Hh-----hhcchHH-------HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc-----C-
Q psy15151 250 QM-----FIGDGAK-------LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD-----G- 311 (431)
Q Consensus 250 ~~-----~~g~~~~-------~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~-----~- 311 (431)
.. ++|...+ .-..+|+.|..+ +||+|||+.| .++.|..|+++|+... +
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCCC
Confidence 44 3333222 224577777666 9999999999 8899999999999832 2
Q ss_pred CCCCCCeEEEEEeCC--CCCCCh--hhhcCCCcceEEEcCCCCHH--HHHHHHHH----HHhcCCCCCCCCH----HHHH
Q psy15151 312 FSSTADIKVIAATNR--VDILDP--ALLRSGRLDRKIEFPHPNEE--ARARIMQI----HSRKMNVSPDVNY----EELS 377 (431)
Q Consensus 312 ~~~~~~v~vI~ttn~--~~~l~~--~l~r~gR~~~~i~~~~p~~~--~r~~Il~~----~l~~~~~~~~~~~----~~la 377 (431)
.....+|.+|++||. .+.+-. .+.++ |+...|.+|++.+. ++..++++ ++++++.....+. ..+.
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~ 287 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALL 287 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 122468889999873 222222 34331 56667777777553 33334443 3445554433332 3334
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHH
Q psy15151 378 RSTDDFNGAQCKAVCVEAGMIAL 400 (431)
Q Consensus 378 ~~~~g~s~~di~~l~~~A~~~A~ 400 (431)
....-.+.+++++++..++..+.
T Consensus 288 ~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 288 AYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred hCCCCCcHHHHHHHHHHHHHHhc
Confidence 44434467999999999998874
No 161
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.48 E-value=2.2e-13 Score=144.11 Aligned_cols=197 Identities=23% Similarity=0.248 Sum_probs=136.8
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehhhhhHhhhcchH--HHH--------HHHHHHHHhCCCeEEEEcc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGPQLVQMFIGDGA--KLV--------RDAFALAKEKAPAIIFIDE 279 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~~l~~~~~g~~~--~~~--------~~lf~~a~~~~p~vl~iDE 279 (431)
-.+|||.|+||||||++|++++..+.. +|+++........++|... ..+ ..++..+ ..++|||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccc
Confidence 468999999999999999999998754 6888876444444444321 000 0011112 235999999
Q ss_pred ccccccCCCCCCCcCcHHHHHHHHHHHHhhc------CCC--CCCCeEEEEEeCCCC---CCChhhhcCCCcceEEEcC-
Q psy15151 280 LDAIGTKRFDSEKAGDREVQRTMLELLNQLD------GFS--STADIKVIAATNRVD---ILDPALLRSGRLDRKIEFP- 347 (431)
Q Consensus 280 id~l~~~r~~~~~~~~~~~~~~l~~lL~~~~------~~~--~~~~v~vI~ttn~~~---~l~~~l~r~gR~~~~i~~~- 347 (431)
|+.+ ++..+..|+++|++.. +.. ...++.||+|+|..+ .+.++++. ||+.++.+.
T Consensus 93 i~rl-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~ 159 (589)
T TIGR02031 93 ANLL-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLED 159 (589)
T ss_pred hhhC-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCC
Confidence 9998 8889999999997632 211 235788999999865 68899999 999887776
Q ss_pred CCCHHHHHHHHHHHHhcC-------------------------CCCCCCCHHHHHHHc--CCCC-HHHHHHHHHHHHHHH
Q psy15151 348 HPNEEARARIMQIHSRKM-------------------------NVSPDVNYEELSRST--DDFN-GAQCKAVCVEAGMIA 399 (431)
Q Consensus 348 ~p~~~~r~~Il~~~l~~~-------------------------~~~~~~~~~~la~~~--~g~s-~~di~~l~~~A~~~A 399 (431)
+|+.++|.+|++..+... .+++ ..+..|+..+ .|.+ .+--..+++.|...|
T Consensus 160 ~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~-~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~A 238 (589)
T TIGR02031 160 VASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISA-EQVKELVLTAASLGISGHRADLFAVRAAKAHA 238 (589)
T ss_pred CCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCH-HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 457778889887754211 1111 1123333322 2222 344446678888899
Q ss_pred HHhCCCCcCHHHHHHHHHHHHHhhhc
Q psy15151 400 LRRGAAIVTHEDFMDAIMEVQAKKKA 425 (431)
Q Consensus 400 ~~~~~~~It~ed~~~Al~~~~~~~~~ 425 (431)
..+++..|+.+|+..|+.-+..++..
T Consensus 239 al~gr~~V~~~Dv~~a~~lvl~hR~~ 264 (589)
T TIGR02031 239 ALHGRTEVTEEDLKLAVELVLLPRAT 264 (589)
T ss_pred HHhCCCCCCHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999988764
No 162
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.48 E-value=2.7e-13 Score=140.94 Aligned_cols=209 Identities=18% Similarity=0.241 Sum_probs=135.4
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHH-----------cCCceEEe
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ-----------TKSTFLKL 243 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~-----------~~~~~i~i 243 (431)
..|++++|.+..++.+.+.+..... ...+|||+|++||||+++|++++.. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~-----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR-----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 4688999999999999998875433 3478999999999999999999987 45699999
Q ss_pred ehhhhhH-----hhhcchHHH--------HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 244 AGPQLVQ-----MFIGDGAKL--------VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 244 ~~~~l~~-----~~~g~~~~~--------~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
||..+.. .++|...+. ...+|+.+..+ +||||||+.| +...|..|+++|++..
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~L-----------p~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEM-----------PLPLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhC-----------CHHHHHHHHhhhhcCe
Confidence 9986533 234432211 12356665444 9999999999 8899999999998732
Q ss_pred C--C----CCCCCeEEEEEeCCCC-------CCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHHhc----CCCCCC
Q psy15151 311 G--F----SSTADIKVIAATNRVD-------ILDPALLRSGRLD-RKIEFPHPNE--EARARIMQIHSRK----MNVSPD 370 (431)
Q Consensus 311 ~--~----~~~~~v~vI~ttn~~~-------~l~~~l~r~gR~~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~~~ 370 (431)
. . ....++.+|++||..- .+.+.+.. |+. ..|.+|++.. ++...++..++++ .+..
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~-- 426 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQSLAALSAP-- 426 (538)
T ss_pred EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC--
Confidence 1 1 1134678999998531 13334443 442 2555555533 3444566666654 2222
Q ss_pred CCH----------HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q psy15151 371 VNY----------EELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDF 412 (431)
Q Consensus 371 ~~~----------~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~ 412 (431)
... ..|.......|.+++++++.+++..+.......++.+++
T Consensus 427 ~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 427 FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 221 233444444577999999999887643222234554444
No 163
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.47 E-value=3.5e-13 Score=140.24 Aligned_cols=214 Identities=18% Similarity=0.200 Sum_probs=140.7
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhH
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQ 250 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~ 250 (431)
...|++++|.+..++.+.+.+..... ...+|||+|++||||+++|++++... +.||+.++|..+..
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~-----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYAR-----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 35688999999999999988875433 34789999999999999999999864 56999999976533
Q ss_pred -----hhhcchHH--------HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC--C---
Q psy15151 251 -----MFIGDGAK--------LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG--F--- 312 (431)
Q Consensus 251 -----~~~g~~~~--------~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~--~--- 312 (431)
.++|...+ ....+|+.+.. ++||||||+.| +...|..|+++|++... .
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCC
Confidence 23343221 12245555544 49999999999 88999999999986321 1
Q ss_pred -CCCCCeEEEEEeCCCC-------CCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHHhcCCCC--CCCC---HHH-
Q psy15151 313 -SSTADIKVIAATNRVD-------ILDPALLRSGRLD-RKIEFPHPNE--EARARIMQIHSRKMNVS--PDVN---YEE- 375 (431)
Q Consensus 313 -~~~~~v~vI~ttn~~~-------~l~~~l~r~gR~~-~~i~~~~p~~--~~r~~Il~~~l~~~~~~--~~~~---~~~- 375 (431)
....++.+|++||..- .+.+.+.. |+. ..|.+||+.. ++...++..++.+.... ..+. +..
T Consensus 343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred ceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 1124568899987542 23344444 553 4666666644 34555666665543211 1122 222
Q ss_pred ------HHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q psy15151 376 ------LSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMD 414 (431)
Q Consensus 376 ------la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~ 414 (431)
|.......|.+++++++.+++..+.......|+.+++..
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 445555557799999999888765322234677777643
No 164
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.47 E-value=4.3e-13 Score=132.40 Aligned_cols=197 Identities=22% Similarity=0.238 Sum_probs=132.8
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhH--
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQ-- 250 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~-- 250 (431)
-+++++|.+..++.+.+.+..... ...+|||+|++||||+++|++++... +.+|+.++|..+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~-----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 366899999999999998886543 44789999999999999999999865 46999999987532
Q ss_pred ---hhhcchHHH-------HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC------CC
Q psy15151 251 ---MFIGDGAKL-------VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF------SS 314 (431)
Q Consensus 251 ---~~~g~~~~~-------~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~------~~ 314 (431)
.++|..... ....++.+. .++|||||||.| +...|..|+.+++..... ..
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATA-----------PMLVQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccC---CCeEEeCChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 233322110 112344443 359999999999 888999999999763211 11
Q ss_pred CCCeEEEEEeCCC-------CCCChhhhcCCCc-ceEEEcCCCCH--HHHHHHHHHHHhc----CCCC--CCCC---HHH
Q psy15151 315 TADIKVIAATNRV-------DILDPALLRSGRL-DRKIEFPHPNE--EARARIMQIHSRK----MNVS--PDVN---YEE 375 (431)
Q Consensus 315 ~~~v~vI~ttn~~-------~~l~~~l~r~gR~-~~~i~~~~p~~--~~r~~Il~~~l~~----~~~~--~~~~---~~~ 375 (431)
..++.||+||+.. ..+.+.|.. || ...|.+|++.. +++..++..++.. ++.. ..++ +..
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~ 216 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARET 216 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 2468889988753 346677777 77 34677777644 3445556555432 2221 1233 344
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 376 LSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 376 la~~~~g~s~~di~~l~~~A~~~A 399 (431)
|.....-.|.+++++++..|+..+
T Consensus 217 L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 217 LLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhc
Confidence 555555557789999999887654
No 165
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.47 E-value=2.1e-13 Score=146.58 Aligned_cols=213 Identities=19% Similarity=0.256 Sum_probs=138.0
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhh-
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLV- 249 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~- 249 (431)
...|++++|.+..++.+.+.+..... ...+|||+|++||||+++|+++++.. +.||+.++|..+.
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK-----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 45799999999999999888876543 34679999999999999999999875 3699999997653
Q ss_pred ----HhhhcchH----HHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC--CC----C
Q psy15151 250 ----QMFIGDGA----KLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF--SS----T 315 (431)
Q Consensus 250 ----~~~~g~~~----~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~--~~----~ 315 (431)
+.++|... ......|+.+ ..++||||||+.| +...|..|+++|+.-... .+ .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 23444321 0011134333 2459999999999 889999999999763211 11 1
Q ss_pred CCeEEEEEeCCC-------CCCChhhhcCCCc-ceEEEcCCCCH--HHHHHHHHHHHhcC----CCCCCCC---HHHHHH
Q psy15151 316 ADIKVIAATNRV-------DILDPALLRSGRL-DRKIEFPHPNE--EARARIMQIHSRKM----NVSPDVN---YEELSR 378 (431)
Q Consensus 316 ~~v~vI~ttn~~-------~~l~~~l~r~gR~-~~~i~~~~p~~--~~r~~Il~~~l~~~----~~~~~~~---~~~la~ 378 (431)
.++.||+|||.. ..+.+.+.- |+ ...|.+|++.. ++...++..++..+ +....+. +..|..
T Consensus 456 ~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 456 VDVRVIATTTADLAMLVEQNRFSRQLYY--ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred eeEEEEEeccCCHHHHHhcCCChHHHhh--hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 367899999853 223333333 33 23555555543 23444555555432 1111222 445555
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 379 STDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 379 ~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
.....+.+++++++..|...+ ....|+.+|+...+
T Consensus 534 y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 555567799999999877654 34467777776554
No 166
>PHA02244 ATPase-like protein
Probab=99.47 E-value=1.5e-12 Score=127.66 Aligned_cols=125 Identities=26% Similarity=0.311 Sum_probs=88.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhc---chHHHH-HHHHHHHHhCCCeEEEEccccccccC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIG---DGAKLV-RDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g---~~~~~~-~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
.+.++||+||||||||++|+++|..++.+|+.++...-.....| ...... ..++..++ ..++|+|||++.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a--- 192 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK--KGGLFFIDEIDAS--- 192 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh--cCCEEEEeCcCcC---
Confidence 34689999999999999999999999999999985311111111 111111 12333333 3469999999997
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhh-----cC-CCCCCCeEEEEEeCCC-----------CCCChhhhcCCCcceEEEcCCC
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQL-----DG-FSSTADIKVIAATNRV-----------DILDPALLRSGRLDRKIEFPHP 349 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~-----~~-~~~~~~v~vI~ttn~~-----------~~l~~~l~r~gR~~~~i~~~~p 349 (431)
+++++..|..+++.. ++ .....++.+|+|+|.+ ..+++++++ || ..|.|+.|
T Consensus 193 --------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp 261 (383)
T PHA02244 193 --------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYD 261 (383)
T ss_pred --------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCC
Confidence 778888888888641 11 1224688999999973 457899999 99 47999998
Q ss_pred CH
Q psy15151 350 NE 351 (431)
Q Consensus 350 ~~ 351 (431)
+.
T Consensus 262 ~~ 263 (383)
T PHA02244 262 EK 263 (383)
T ss_pred cH
Confidence 84
No 167
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.46 E-value=7.3e-14 Score=126.76 Aligned_cols=146 Identities=31% Similarity=0.431 Sum_probs=73.9
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC------------------
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK------------------ 237 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~------------------ 237 (431)
.|.+|+|++..+..+.-+.. .++++||+||||||||++|+++..-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAa---------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA---------------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH---------------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHc---------------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 37899999999999877665 347999999999999999999998321
Q ss_pred ----------CceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHH
Q psy15151 238 ----------STFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 307 (431)
Q Consensus 238 ----------~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~ 307 (431)
.||....-+.-...++|......-..+..|.. +|||+||+-.+ ++.+...|.+.++
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef-----------~~~vld~Lr~ple 131 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF-----------DRSVLDALRQPLE 131 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS------------HHHHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc-----------CHHHHHHHHHHHH
Confidence 12222222222222333322111122334444 49999999998 7788888888887
Q ss_pred hhcC--------CCCCCCeEEEEEeCC-----------------------CCCCChhhhcCCCcceEEEcCCCCHH
Q psy15151 308 QLDG--------FSSTADIKVIAATNR-----------------------VDILDPALLRSGRLDRKIEFPHPNEE 352 (431)
Q Consensus 308 ~~~~--------~~~~~~v~vI~ttn~-----------------------~~~l~~~l~r~gR~~~~i~~~~p~~~ 352 (431)
.... ...+.++.+|+|+|. ...+...++. |||..+.++..+.+
T Consensus 132 ~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 132 DGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred CCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 6321 122467889999995 1235566777 88888888876654
No 168
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.45 E-value=6.3e-12 Score=120.69 Aligned_cols=193 Identities=16% Similarity=0.203 Sum_probs=123.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCC-ceEE---ee----hhhhhHh---hhcch------HHHHHHHH----HHHHhC
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKS-TFLK---LA----GPQLVQM---FIGDG------AKLVRDAF----ALAKEK 270 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~-~~i~---i~----~~~l~~~---~~g~~------~~~~~~lf----~~a~~~ 270 (431)
+..++|+||+|+|||++++.+++.+.. .+.. ++ ..++... ..|.. ....+.+. .....+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 345889999999999999999998652 2221 11 1122111 12221 11122222 233456
Q ss_pred CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC--CCCC----ChhhhcCCCcceEE
Q psy15151 271 APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR--VDIL----DPALLRSGRLDRKI 344 (431)
Q Consensus 271 ~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~--~~~l----~~~l~r~gR~~~~i 344 (431)
.+.+|+|||++.+ +......+..+.+... .....+.||++... .+.+ ...+.+ |+...+
T Consensus 123 ~~~vliiDe~~~l-----------~~~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 123 KRALLVVDEAQNL-----------TPELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CCeEEEEECcccC-----------CHHHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 6789999999998 3333344433332211 12233334444332 1111 123555 888899
Q ss_pred EcCCCCHHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q psy15151 345 EFPHPNEEARARIMQIHSRKMNVS-----PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 345 ~~~~p~~~~r~~Il~~~l~~~~~~-----~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~ 419 (431)
.+++++.++..+++...+...+.. .+..+..|...+.|.. +.|..+|..+...|..++...|+.+++..+++.+
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999999999999888754432 1223566778888776 6699999999999999999999999999999987
Q ss_pred H
Q psy15151 420 Q 420 (431)
Q Consensus 420 ~ 420 (431)
.
T Consensus 267 ~ 267 (269)
T TIGR03015 267 D 267 (269)
T ss_pred h
Confidence 5
No 169
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.45 E-value=2.5e-13 Score=121.43 Aligned_cols=110 Identities=25% Similarity=0.349 Sum_probs=74.4
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCC----ceEEeehhhhhHh---------hhcchHHHHHHHHHHHHhCCCeEEEE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKS----TFLKLAGPQLVQM---------FIGDGAKLVRDAFALAKEKAPAIIFI 277 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~----~~i~i~~~~l~~~---------~~g~~~~~~~~lf~~a~~~~p~vl~i 277 (431)
|-.++||+||+|||||.+|+++|..+.. +++.++|+++... ..|....++. .... .||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~----~~~~---gVVll 74 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVG----AEEG---GVVLL 74 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHH----HHHH---TEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceee----ccch---hhhhh
Confidence 4467999999999999999999999885 9999999988661 1222222111 1112 39999
Q ss_pred ccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC------CCCCeEEEEEeCCC
Q psy15151 278 DELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS------STADIKVIAATNRV 327 (431)
Q Consensus 278 DEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~------~~~~v~vI~ttn~~ 327 (431)
||||++.+..+.........+++.|+++++...-.. +..++++|+|+|--
T Consensus 75 DEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 75 DEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp ETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred HHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 999998433211112222288999999998742211 23689999999953
No 170
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.45 E-value=6.9e-13 Score=138.82 Aligned_cols=210 Identities=21% Similarity=0.297 Sum_probs=135.6
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLV 249 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~ 249 (431)
....|++++|.+..++.+.+.+..... ...+|||+|++||||+++|++++... ..||+.++|+.+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~-----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM-----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 467899999999999998887764332 34679999999999999999998764 3689999998764
Q ss_pred Hh-----hhcchHH-------HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc--CC---
Q psy15151 250 QM-----FIGDGAK-------LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD--GF--- 312 (431)
Q Consensus 250 ~~-----~~g~~~~-------~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~--~~--- 312 (431)
.. ++|...+ ....+|+.+.. ++||||||+.| +...|..|+++++... ..
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCCC
Confidence 32 3343211 11234555543 49999999999 8899999999998632 11
Q ss_pred -CCCCCeEEEEEeCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHHh----cCCCC-CCCC---H
Q psy15151 313 -SSTADIKVIAATNRV-------DILDPALLRSGRLD-RKIEFPHPNE--EARARIMQIHSR----KMNVS-PDVN---Y 373 (431)
Q Consensus 313 -~~~~~v~vI~ttn~~-------~~l~~~l~r~gR~~-~~i~~~~p~~--~~r~~Il~~~l~----~~~~~-~~~~---~ 373 (431)
....++.||+||+.+ ..+.+.+.. |+. ..|.+|++.. +++..++..++. +.+.. ..+. +
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~ 411 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLN 411 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 112467889988753 235566666 654 3555665543 234444444433 33321 1233 3
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q psy15151 374 EELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDF 412 (431)
Q Consensus 374 ~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~ 412 (431)
..|..+....+.+++++++.+|...+ ....|+.+|+
T Consensus 412 ~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 412 TVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 34444434446688888888887654 3345666553
No 171
>PRK09087 hypothetical protein; Validated
Probab=99.44 E-value=4.5e-12 Score=118.59 Aligned_cols=172 Identities=19% Similarity=0.209 Sum_probs=114.1
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEK 292 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~ 292 (431)
..++|+||+|+|||+|+++++...+.. +++...+... .+..... .+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH-----------HHHhhhc---CeEEEECCCCCCC-------
Confidence 459999999999999999999886554 3333322221 1112222 3899999998621
Q ss_pred cCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHHhcCCC
Q psy15151 293 AGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI---LDPALLRSGRLD--RKIEFPHPNEEARARIMQIHSRKMNV 367 (431)
Q Consensus 293 ~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~r~gR~~--~~i~~~~p~~~~r~~Il~~~l~~~~~ 367 (431)
+ +..+..+++.+.. .+..+||+++..|.. ..+.+++ |+. .++.+.+|+.+.+.+|++.+++..++
T Consensus 102 --~---~~~lf~l~n~~~~---~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 102 --D---ETGLFHLINSVRQ---AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred --C---HHHHHHHHHHHHh---CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1 2446666665432 234445555544443 3578888 774 69999999999999999999876554
Q ss_pred C-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q psy15151 368 S-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 368 ~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~ 419 (431)
. ++..++.|+.... -+.+.+..++......+...+ ..||...+.++++.+
T Consensus 172 ~l~~ev~~~La~~~~-r~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 172 YVDPHVVYYLVSRME-RSLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CCCHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 3 2223677777666 344556666666666665555 448999999998875
No 172
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.42 E-value=3.7e-13 Score=120.00 Aligned_cols=122 Identities=25% Similarity=0.403 Sum_probs=88.2
Q ss_pred ccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhH-----h
Q psy15151 180 IGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQ-----M 251 (431)
Q Consensus 180 i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~-----~ 251 (431)
|+|.+..++++.+.+..... .+.+|||+|++||||+++|+++++.. +.||+.++|+.+.. .
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC-----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 57889999999988876554 34789999999999999999999965 46999999986633 3
Q ss_pred hhcchHH-------HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc--CC----CCCCCe
Q psy15151 252 FIGDGAK-------LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD--GF----SSTADI 318 (431)
Q Consensus 252 ~~g~~~~-------~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~--~~----~~~~~v 318 (431)
++|.... ....+|+.|..+ +||||||+.| ++.+|..|+++|+... .. ....++
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccc
Confidence 4554221 123677777766 9999999999 8999999999999732 11 113588
Q ss_pred EEEEEeCC
Q psy15151 319 KVIAATNR 326 (431)
Q Consensus 319 ~vI~ttn~ 326 (431)
.||++|+.
T Consensus 136 RiI~st~~ 143 (168)
T PF00158_consen 136 RIIASTSK 143 (168)
T ss_dssp EEEEEESS
T ss_pred eEEeecCc
Confidence 99999985
No 173
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.41 E-value=1.5e-12 Score=136.06 Aligned_cols=198 Identities=23% Similarity=0.279 Sum_probs=133.2
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhH--
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQ-- 250 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~-- 250 (431)
.+.+++|.+..++.+.+.+..... .+.+|||+|++||||+++|++++... +.+|+.++|..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~-----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA-----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 678899999999999998886433 45789999999999999999999874 46999999987643
Q ss_pred ---hhhcchHHH-------HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC------CCC
Q psy15151 251 ---MFIGDGAKL-------VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG------FSS 314 (431)
Q Consensus 251 ---~~~g~~~~~-------~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~------~~~ 314 (431)
.++|...+. ....|+.+. .++|||||||.| +.+.|..|+++++.... ...
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCcce
Confidence 233432111 112355443 359999999999 88999999999976321 112
Q ss_pred CCCeEEEEEeCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHHhc----CCCC-CCCC---HHHH
Q psy15151 315 TADIKVIAATNRV-------DILDPALLRSGRLD-RKIEFPHPNE--EARARIMQIHSRK----MNVS-PDVN---YEEL 376 (431)
Q Consensus 315 ~~~v~vI~ttn~~-------~~l~~~l~r~gR~~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~-~~~~---~~~l 376 (431)
..++.||++||.. ..+...|.. |+. ..|.+|++.. ++...++.+++.+ ++.. ..++ +..|
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 3478899999863 235555555 553 2456665543 2344455544433 2211 1233 4455
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHH
Q psy15151 377 SRSTDDFNGAQCKAVCVEAGMIAL 400 (431)
Q Consensus 377 a~~~~g~s~~di~~l~~~A~~~A~ 400 (431)
.....-.|.+++++++.+|+..+.
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhcC
Confidence 555555678999999999988764
No 174
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.41 E-value=4.3e-12 Score=125.06 Aligned_cols=225 Identities=22% Similarity=0.299 Sum_probs=148.8
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeeh--------
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG-------- 245 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~-------- 245 (431)
...|.-++|++..+..|.-....| .-.++||.|+.|||||+++|+||.-+..--+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 567899999999988876554332 34799999999999999999999965432221122
Q ss_pred -----hh-------------------hhHhhhcchHHHH-H-----------------HHHHHHHhCCCeEEEEcccccc
Q psy15151 246 -----PQ-------------------LVQMFIGDGAKLV-R-----------------DAFALAKEKAPAIIFIDELDAI 283 (431)
Q Consensus 246 -----~~-------------------l~~~~~g~~~~~~-~-----------------~lf~~a~~~~p~vl~iDEid~l 283 (431)
.. ++..-.|.++..+ + .++..|. ..|+++||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An---RGIlYvDEvnlL 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN---RGILYVDEVNLL 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc---CCEEEEeccccc
Confidence 11 1111123333311 1 1222333 359999999999
Q ss_pred ccCCCCCCCcCcHHHHHHHHHHHHhh------c--CCCCCCCeEEEEEeCCCC-CCChhhhcCCCcceEEEcCCC-CHHH
Q psy15151 284 GTKRFDSEKAGDREVQRTMLELLNQL------D--GFSSTADIKVIAATNRVD-ILDPALLRSGRLDRKIEFPHP-NEEA 353 (431)
Q Consensus 284 ~~~r~~~~~~~~~~~~~~l~~lL~~~------~--~~~~~~~v~vI~ttn~~~-~l~~~l~r~gR~~~~i~~~~p-~~~~ 353 (431)
+..++..|+..+... + .+..+.++++|+|+|..+ .|.|.|+. ||...|.+..| +.++
T Consensus 157 -----------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~ 223 (423)
T COG1239 157 -----------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEE 223 (423)
T ss_pred -----------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHH
Confidence 788899999988873 2 234457899999999754 48889999 99999999866 6788
Q ss_pred HHHHHHHHHhcCCCCCCCCH-------------------------------HHHHHHc-----CCCCHHHHHHHHHHHHH
Q psy15151 354 RARIMQIHSRKMNVSPDVNY-------------------------------EELSRST-----DDFNGAQCKAVCVEAGM 397 (431)
Q Consensus 354 r~~Il~~~l~~~~~~~~~~~-------------------------------~~la~~~-----~g~s~~di~~l~~~A~~ 397 (431)
|.+|+++.+.- ...++... ..++..+ .| .-+++ .+++.|..
T Consensus 224 rv~Ii~r~~~f-~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g-~radi-~~~r~a~a 300 (423)
T COG1239 224 RVEIIRRRLAF-EAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDG-HRADI-VVVRAAKA 300 (423)
T ss_pred HHHHHHHHHHh-hcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCC-Cchhh-HHHHHHHH
Confidence 99988866542 11111111 1111111 11 11222 33556667
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHHhhhcccCCC
Q psy15151 398 IALRRGAAIVTHEDFMDAIMEVQAKKKANLNYY 430 (431)
Q Consensus 398 ~A~~~~~~~It~ed~~~Al~~~~~~~~~~~~~~ 430 (431)
.|...++..|+.+|+.+|......++....+++
T Consensus 301 ~aa~~Gr~~v~~~Di~~a~~l~l~hR~~~~~~~ 333 (423)
T COG1239 301 LAALRGRTEVEEEDIREAAELALLHRRRRKPFI 333 (423)
T ss_pred HHHhcCceeeehhhHHHHHhhhhhhhhcccccc
Confidence 778889999999999999999998887666554
No 175
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.40 E-value=8.6e-12 Score=130.28 Aligned_cols=194 Identities=22% Similarity=0.276 Sum_probs=127.1
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCc-eEEe---ehhhhhHhhhcch-HHH--H-HHHHHHHHhCCCeEEEEccccccc
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKST-FLKL---AGPQLVQMFIGDG-AKL--V-RDAFALAKEKAPAIIFIDELDAIG 284 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~-~i~i---~~~~l~~~~~g~~-~~~--~-~~lf~~a~~~~p~vl~iDEid~l~ 284 (431)
.++||+|+||||||++|+++++..... |... ++..+........ .+. + ...+..| ..++++|||++.+
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l- 312 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLA---DNGVCCIDEFDKM- 312 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEec---CCCEEEEechhhC-
Confidence 479999999999999999999976543 2221 2211211110000 000 0 0111222 2359999999998
Q ss_pred cCCCCCCCcCcHHHHHHHHHHHHhhc------CC--CCCCCeEEEEEeCCCC-------------CCChhhhcCCCcceE
Q psy15151 285 TKRFDSEKAGDREVQRTMLELLNQLD------GF--SSTADIKVIAATNRVD-------------ILDPALLRSGRLDRK 343 (431)
Q Consensus 285 ~~r~~~~~~~~~~~~~~l~~lL~~~~------~~--~~~~~v~vI~ttn~~~-------------~l~~~l~r~gR~~~~ 343 (431)
+...+..|++.+++-. +. .-+.++.||+|+|+.. .+++++++ |||..
T Consensus 313 ----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi 380 (509)
T smart00350 313 ----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLL 380 (509)
T ss_pred ----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeE
Confidence 7788888999886521 11 1135788999999753 48999999 99986
Q ss_pred EEc-CCCCHHHHHHHHHHHHhcCC-----------------------------CCCCCC---HHHHHH-----H------
Q psy15151 344 IEF-PHPNEEARARIMQIHSRKMN-----------------------------VSPDVN---YEELSR-----S------ 379 (431)
Q Consensus 344 i~~-~~p~~~~r~~Il~~~l~~~~-----------------------------~~~~~~---~~~la~-----~------ 379 (431)
+.+ ..|+.+...+|+++.+.... +.+.+. .+.|.. +
T Consensus 381 ~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~ 460 (509)
T smart00350 381 FVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQS 460 (509)
T ss_pred EEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccccc
Confidence 555 68888888888876442110 000111 111111 1
Q ss_pred ----cCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q psy15151 380 ----TDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 380 ----~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~ 422 (431)
..+.+++.+..+++-|...|..+.+..|+.+|+..|++-+..+
T Consensus 461 ~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~s 507 (509)
T smart00350 461 EARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRES 507 (509)
T ss_pred ccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHHh
Confidence 1245788999999999999999999999999999999987643
No 176
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.40 E-value=8.6e-12 Score=128.50 Aligned_cols=214 Identities=23% Similarity=0.306 Sum_probs=137.2
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC----------------
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS---------------- 238 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~---------------- 238 (431)
..|.++.|+...++.+.-++ ..+.+++|+||||+|||++++.++..+..
T Consensus 188 ~d~~~v~Gq~~~~~al~laa---------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA---------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhheec---------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 36888889887666643221 25578999999999999999999874321
Q ss_pred ------------ceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHH
Q psy15151 239 ------------TFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELL 306 (431)
Q Consensus 239 ------------~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL 306 (431)
||.....+.-...++|.+...-...+..|..+ +|||||++.+ ++..+..|.+.|
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~-----------~~~~~~~L~~~L 318 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF-----------ERRTLDALREPI 318 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC-----------CHHHHHHHHHHH
Confidence 11111111111123333322223456666555 9999999997 778888888888
Q ss_pred Hhhc--------CCCCCCCeEEEEEeCCCC---------------------CCChhhhcCCCcceEEEcCCCCHHHH---
Q psy15151 307 NQLD--------GFSSTADIKVIAATNRVD---------------------ILDPALLRSGRLDRKIEFPHPNEEAR--- 354 (431)
Q Consensus 307 ~~~~--------~~~~~~~v~vI~ttn~~~---------------------~l~~~l~r~gR~~~~i~~~~p~~~~r--- 354 (431)
+.-. ......++.+|+|+|... .++.+++. |||..+.++.|+.++.
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~ 396 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKT 396 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcc
Confidence 6632 111246789999999742 36778888 9999999998853211
Q ss_pred -------H----HHHH---HH-HhcCCCCCCCCHH-------------H-H--HHHcCCCCHHHHHHHHHHHHHHHHHhC
Q psy15151 355 -------A----RIMQ---IH-SRKMNVSPDVNYE-------------E-L--SRSTDDFNGAQCKAVCVEAGMIALRRG 403 (431)
Q Consensus 355 -------~----~Il~---~~-l~~~~~~~~~~~~-------------~-l--a~~~~g~s~~di~~l~~~A~~~A~~~~ 403 (431)
. .+.. .+ .+.-.+...+.-. . + +....|.|.+....+++-|...|..++
T Consensus 397 ~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g 476 (506)
T PRK09862 397 VVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQ 476 (506)
T ss_pred cCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 1 1111 00 0000111111111 1 1 123456788999999999999999999
Q ss_pred CCCcCHHHHHHHHHHH
Q psy15151 404 AAIVTHEDFMDAIMEV 419 (431)
Q Consensus 404 ~~~It~ed~~~Al~~~ 419 (431)
+..|+.+|+.+|+..-
T Consensus 477 ~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 477 SDIITRQHLQEAVSYR 492 (506)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998753
No 177
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=1.1e-11 Score=123.02 Aligned_cols=180 Identities=18% Similarity=0.191 Sum_probs=120.9
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC-------ceEE-e-
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS-------TFLK-L- 243 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~-------~~i~-i- 243 (431)
.+..+.+|+|++.++..+..++... ..+..+||+||+|+|||++|+.+|+.+.+ +... .
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 3568999999999999999887742 13467999999999999999999998654 1110 0
Q ss_pred --ehhh---hhHh----h--hc----c---------hHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCCCcCc
Q psy15151 244 --AGPQ---LVQM----F--IG----D---------GAKLVRDAFALAK----EKAPAIIFIDELDAIGTKRFDSEKAGD 295 (431)
Q Consensus 244 --~~~~---l~~~----~--~g----~---------~~~~~~~lf~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~ 295 (431)
.|.. +... + +. . +...++.+.+... .+.+.|++|||+|.| +
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----------~ 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----------N 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------C
Confidence 1111 1000 0 00 0 1233444443332 345679999999999 6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHH
Q psy15151 296 REVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEE 375 (431)
Q Consensus 296 ~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~ 375 (431)
...++.|+..|++ ...++++|+.|+.++.+.|.+++ |+ ..+.|++|+.++..+++........++ +.....
T Consensus 155 ~~aanaLLk~LEE-----pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~ 225 (351)
T PRK09112 155 RNAANAILKTLEE-----PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEA 225 (351)
T ss_pred HHHHHHHHHHHhc-----CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHH
Confidence 6777777777765 34566777778888999999988 88 699999999999999998743222211 112445
Q ss_pred HHHHcCCCC
Q psy15151 376 LSRSTDDFN 384 (431)
Q Consensus 376 la~~~~g~s 384 (431)
++..+.|..
T Consensus 226 i~~~s~G~p 234 (351)
T PRK09112 226 LLQRSKGSV 234 (351)
T ss_pred HHHHcCCCH
Confidence 566555443
No 178
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.37 E-value=4e-12 Score=134.41 Aligned_cols=133 Identities=23% Similarity=0.386 Sum_probs=90.3
Q ss_pred eEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc----CC------------CCCCCeEEEEEeCCC--CCCChhh
Q psy15151 273 AIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD----GF------------SSTADIKVIAATNRV--DILDPAL 334 (431)
Q Consensus 273 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~----~~------------~~~~~v~vI~ttn~~--~~l~~~l 334 (431)
++|||||++.| ++..+..|+++|+.-. +. .-+.++.||+++|+. ..++|+|
T Consensus 228 GtL~LDei~~L-----------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL 296 (637)
T PRK13765 228 GVLFIDEINTL-----------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPAL 296 (637)
T ss_pred cEEEEeChHhC-----------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHH
Confidence 68999999998 7788899999987522 10 012367899999874 5578999
Q ss_pred hcCCCcc---eEEEcCC---CCHHHHHHHHHHHHhcCCC---CCCCCHH---HHHHH---cCC------CCHHHHHHHHH
Q psy15151 335 LRSGRLD---RKIEFPH---PNEEARARIMQIHSRKMNV---SPDVNYE---ELSRS---TDD------FNGAQCKAVCV 393 (431)
Q Consensus 335 ~r~gR~~---~~i~~~~---p~~~~r~~Il~~~l~~~~~---~~~~~~~---~la~~---~~g------~s~~di~~l~~ 393 (431)
.. ||. ..+.|.. -+.+.+..+++...+.... ...++-+ .|... ..| +..++|..+++
T Consensus 297 ~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r 374 (637)
T PRK13765 297 RS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVR 374 (637)
T ss_pred HH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHH
Confidence 88 875 5666652 2345666666644433321 2234433 23221 111 23689999999
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHH
Q psy15151 394 EAGMIALRRGAAIVTHEDFMDAIME 418 (431)
Q Consensus 394 ~A~~~A~~~~~~~It~ed~~~Al~~ 418 (431)
.|...|..++...|+.+|+.+|+..
T Consensus 375 ~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 375 VAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHHHHHHhhccceecHHHHHHHHHh
Confidence 9999999999999999999988754
No 179
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=1.7e-11 Score=122.37 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=114.1
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce----E-------
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF----L------- 241 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~----i------- 241 (431)
.+..+++|+|++.+++.+..++... ..+..+||+||+|+||+++|.++|+.+-+.- -
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3568899999999999999887752 2456799999999999999999999753210 0
Q ss_pred ----Eeehhhh--hH-h------hh-----cc--------hHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCC
Q psy15151 242 ----KLAGPQL--VQ-M------FI-----GD--------GAKLVRDAFALAK----EKAPAIIFIDELDAIGTKRFDSE 291 (431)
Q Consensus 242 ----~i~~~~l--~~-~------~~-----g~--------~~~~~~~lf~~a~----~~~p~vl~iDEid~l~~~r~~~~ 291 (431)
.-.|+.. +. . ++ +. ....++.+.+.+. .+.|.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 0011100 00 0 00 10 1233455544432 345789999999998
Q ss_pred CcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHH
Q psy15151 292 KAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHS 362 (431)
Q Consensus 292 ~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l 362 (431)
+...++.|+..+++ ...++++|++|+.++.+.|.+++ |+ ..+.|++|+.++..+++....
T Consensus 154 ---~~~aanaLLK~LEe-----pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 154 ---NANAANALLKVLEE-----PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred ---CHHHHHHHHHHHhc-----CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence 77778888888875 34567788899999999999888 87 689999999999999988754
No 180
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.37 E-value=4.4e-11 Score=109.24 Aligned_cols=194 Identities=19% Similarity=0.251 Sum_probs=135.2
Q ss_pred cCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhh
Q psy15151 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQ 247 (431)
Q Consensus 171 ~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~ 247 (431)
..+.+...+|+|.+.+++.+.+....++.-. |..+|||+|..|||||+|+||+.++. +..++.|+-.+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 3446789999999999999998887665533 66899999999999999999998874 45688888776
Q ss_pred hhHhhhcchHHHHHHHHHHHHhCC-CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 248 LVQMFIGDGAKLVRDAFALAKEKA-PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 248 l~~~~~g~~~~~~~~lf~~a~~~~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
+.. +..+++..+..+ +-|||+|++-.= .+.+....|-.+|+.. --..+.||+|.+|+|+
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe----------~gd~~yK~LKs~LeG~-ve~rP~NVl~YATSNR 183 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSFE----------EGDDAYKALKSALEGG-VEGRPANVLFYATSNR 183 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCCC----------CCchHHHHHHHHhcCC-cccCCCeEEEEEecCC
Confidence 643 334556665543 569999997431 1223345565666531 1134679999999998
Q ss_pred CCCCCh--------------------hhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCC---CHHH--HHHHcC
Q psy15151 327 VDILDP--------------------ALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDV---NYEE--LSRSTD 381 (431)
Q Consensus 327 ~~~l~~--------------------~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~---~~~~--la~~~~ 381 (431)
...++. .+.-+.||...+.|++++.++-..|+..+++..+++-+. +.+. .|....
T Consensus 184 RHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg 263 (287)
T COG2607 184 RHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRG 263 (287)
T ss_pred cccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 655431 122245999999999999999999999999988877421 1112 223344
Q ss_pred CCCHHHHHHHHH
Q psy15151 382 DFNGAQCKAVCV 393 (431)
Q Consensus 382 g~s~~di~~l~~ 393 (431)
|.||+--.+.++
T Consensus 264 ~RSGR~A~QF~~ 275 (287)
T COG2607 264 GRSGRVAWQFIR 275 (287)
T ss_pred CCccHhHHHHHH
Confidence 556665555444
No 181
>KOG1942|consensus
Probab=99.35 E-value=5.1e-11 Score=111.49 Aligned_cols=133 Identities=23% Similarity=0.269 Sum_probs=100.7
Q ss_pred CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC-------------CCCCChhhhcCC
Q psy15151 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR-------------VDILDPALLRSG 338 (431)
Q Consensus 272 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~-------------~~~l~~~l~r~g 338 (431)
|.||||||++.| +-+.+.-|...|+ ++-..+||++||+ |..+++.++.
T Consensus 297 PGVLFIDEVhML-----------DiEcFTyL~kalE------S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHML-----------DIECFTYLHKALE------SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred CcceEeeehhhh-----------hhHHHHHHHHHhc------CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 789999999998 6665555555553 3445568888886 5667888888
Q ss_pred CcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q psy15151 339 RLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 339 R~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~ 417 (431)
|+ .+|..-+++.++.++|++.+.+.-++. .+..+..++.....-+.+...+++.-|...|...++..|..+|+.++-.
T Consensus 358 Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~ 436 (456)
T KOG1942|consen 358 RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTE 436 (456)
T ss_pred he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHH
Confidence 77 577777889999999999887655544 2333666777666667777778888888899999999999999999988
Q ss_pred HHHHhhh
Q psy15151 418 EVQAKKK 424 (431)
Q Consensus 418 ~~~~~~~ 424 (431)
.+...+.
T Consensus 437 Lf~Dak~ 443 (456)
T KOG1942|consen 437 LFLDAKR 443 (456)
T ss_pred HHHhchh
Confidence 8776543
No 182
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=1.6e-11 Score=120.71 Aligned_cols=170 Identities=12% Similarity=0.227 Sum_probs=118.1
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc--------eEEeehhh
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST--------FLKLAGPQ 247 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~--------~i~i~~~~ 247 (431)
+|++|+|++..++.+...+... ..++.+||+||+|+|||++|+++|..+.+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 5889999999999998887531 244678999999999999999999975332 22222110
Q ss_pred hhHhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q psy15151 248 LVQMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAA 323 (431)
Q Consensus 248 l~~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~t 323 (431)
. ..-+...++.+.+.+.. +...|++||++|.+ +.+.++.|+..|++ .+.++++|++
T Consensus 70 --~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LEe-----pp~~t~~il~ 129 (313)
T PRK05564 70 --K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIEE-----PPKGVFIILL 129 (313)
T ss_pred --C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCCCeEEEEE
Confidence 0 01123345665554432 34579999999998 66677777777765 4567778888
Q ss_pred eCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCC
Q psy15151 324 TNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDF 383 (431)
Q Consensus 324 tn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~ 383 (431)
|+.++.+.|.+++ |+ ..+.|++|+.++....+...+.. ++ +.....++..+.|.
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g~ 183 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDGI 183 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCCC
Confidence 8889999999999 77 58999999999988888765432 11 12244455555543
No 183
>KOG1969|consensus
Probab=99.35 E-value=1.8e-11 Score=126.68 Aligned_cols=213 Identities=20% Similarity=0.283 Sum_probs=139.1
Q ss_pred cccCCCCCcccccCchHHHHHHHHHhhcc--ccChHHHHh-------------------cCCCCCCCceeeCCCCCchHH
Q psy15151 169 VDERPTEQYSDIGGLDKQIQELIEAVVLP--MTHKEKFVN-------------------LGIQPPKGVLLYGPPGTGKTL 227 (431)
Q Consensus 169 ~~~~~~~~~~~i~G~~~~i~~l~~~i~~~--~~~~~~~~~-------------------~g~~~~~~vLl~GppGtGKT~ 227 (431)
+.+.....|.++.|-+..=+.+.-++... --+...+.+ .+-++.+-+||+||||-|||+
T Consensus 262 Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 262 VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 44445567899999998888887777632 000111111 122344568899999999999
Q ss_pred HHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHH--------hCCCeEEEEccccccccCCCCCCCcCcHHHH
Q psy15151 228 LARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAK--------EKAPAIIFIDELDAIGTKRFDSEKAGDREVQ 299 (431)
Q Consensus 228 lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~--------~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~ 299 (431)
||+.+|++.|..++.||+++-- +...++...+.|- ...|..|++||||-- .+...
T Consensus 342 LAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa-----------~~~~V 404 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA-----------PRAAV 404 (877)
T ss_pred HHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCC-----------cHHHH
Confidence 9999999999999999998632 2233333222221 256889999999974 56667
Q ss_pred HHHHHHHHhh----cCCCC---------C---CCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHh
Q psy15151 300 RTMLELLNQL----DGFSS---------T---ADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSR 363 (431)
Q Consensus 300 ~~l~~lL~~~----~~~~~---------~---~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~ 363 (431)
++++.++..- .|... . -...||+.+|. ...|+|+.---|..+|.|++|...-..+-|+..+.
T Consensus 405 dvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 405 DVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICH 482 (877)
T ss_pred HHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHh
Confidence 7888887731 11111 0 12348899994 44566654325788999999999888877777766
Q ss_pred cCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Q psy15151 364 KMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG 403 (431)
Q Consensus 364 ~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~ 403 (431)
.-++. +|...|...++ ++..||++.++..-..|....
T Consensus 483 rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 483 RENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred hhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhcc
Confidence 55544 33344444433 445789988887777766543
No 184
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.35 E-value=1.5e-11 Score=123.88 Aligned_cols=148 Identities=23% Similarity=0.350 Sum_probs=93.0
Q ss_pred cccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC--ce-----EEeehh---
Q psy15151 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS--TF-----LKLAGP--- 246 (431)
Q Consensus 177 ~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~--~~-----i~i~~~--- 246 (431)
++++.+.+..++.+...+. ..++++|+||||||||++|+.+|..+.. .+ +.+..+
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4566777777777766554 3478999999999999999999997643 12 222221
Q ss_pred -hhhHhhh----cc--hHHHHHHHHHHHHhC--CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhh--------
Q psy15151 247 -QLVQMFI----GD--GAKLVRDAFALAKEK--APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL-------- 309 (431)
Q Consensus 247 -~l~~~~~----g~--~~~~~~~lf~~a~~~--~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~-------- 309 (431)
+++..+. |. ..+.+..+...|... .|.|||||||++.. -..+...+.++|+.-
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan----------i~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN----------LSKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC----------HHHhhhhhhhhccccccccccce
Confidence 2222221 10 011223344556543 47899999999861 123345555555421
Q ss_pred ---------cCCCCCCCeEEEEEeCCCC----CCChhhhcCCCcceEEEcCC-CCHH
Q psy15151 310 ---------DGFSSTADIKVIAATNRVD----ILDPALLRSGRLDRKIEFPH-PNEE 352 (431)
Q Consensus 310 ---------~~~~~~~~v~vI~ttn~~~----~l~~~l~r~gR~~~~i~~~~-p~~~ 352 (431)
..+.-+.++.||+|+|..+ .+|.|++| ||.. |++.+ ++..
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p~~~~~ 362 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEPGFDTP 362 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecCCCChH
Confidence 1234457899999999887 69999999 9954 55554 4443
No 185
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.34 E-value=1e-12 Score=113.45 Aligned_cols=112 Identities=32% Similarity=0.419 Sum_probs=75.8
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH--hhhcchHHH-------HHHHHHHHHhCCCeEEEEccccccc
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ--MFIGDGAKL-------VRDAFALAKEKAPAIIFIDELDAIG 284 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~--~~~g~~~~~-------~~~lf~~a~~~~p~vl~iDEid~l~ 284 (431)
+|+|+||||||||++|+.+|+.++.+++.+.++...+ .++|...-. -..+...++ .+.+++||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 4899999999999999999999999999998865322 222221100 000111111 4579999999997
Q ss_pred cCCCCCCCcCcHHHHHHHHHHHHhhcCC-------C-CCC------CeEEEEEeCCCC----CCChhhhcCCCc
Q psy15151 285 TKRFDSEKAGDREVQRTMLELLNQLDGF-------S-STA------DIKVIAATNRVD----ILDPALLRSGRL 340 (431)
Q Consensus 285 ~~r~~~~~~~~~~~~~~l~~lL~~~~~~-------~-~~~------~v~vI~ttn~~~----~l~~~l~r~gR~ 340 (431)
+++++..|+.+++.-... . ... ++.+|+|+|..+ .+++++++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 788889999998762111 0 111 489999999988 89999999 87
No 186
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.34 E-value=2e-11 Score=111.04 Aligned_cols=148 Identities=20% Similarity=0.216 Sum_probs=97.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCc-------e-EEeehhhhhHh---------hh--cchHHHHHHHHHHHHh--
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKST-------F-LKLAGPQLVQM---------FI--GDGAKLVRDAFALAKE-- 269 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~-------~-i~i~~~~l~~~---------~~--g~~~~~~~~lf~~a~~-- 269 (431)
.+..+||+||+|+|||++|+.++..+... . ...+|..+... .. ..+...++.+.+.+..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 45679999999999999999999985432 0 00011100000 00 0123455555665544
Q ss_pred --CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcC
Q psy15151 270 --KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFP 347 (431)
Q Consensus 270 --~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~ 347 (431)
..+.|++|||+|.+ ..+.++.|+..++. ......+|++||.+..+.+++.+ |+ ..+.|+
T Consensus 93 ~~~~~kviiide~~~l-----------~~~~~~~Ll~~le~-----~~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~ 153 (188)
T TIGR00678 93 QESGRRVVIIEDAERM-----------NEAAANALLKTLEE-----PPPNTLFILITPSPEKLLPTIRS--RC-QVLPFP 153 (188)
T ss_pred ccCCeEEEEEechhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChHhChHHHHh--hc-EEeeCC
Confidence 34679999999998 55556666666643 23466677888888899999998 77 589999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCC
Q psy15151 348 HPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDD 382 (431)
Q Consensus 348 ~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g 382 (431)
+|+.++..+++... ++++ ..+..++..+.|
T Consensus 154 ~~~~~~~~~~l~~~----gi~~-~~~~~i~~~~~g 183 (188)
T TIGR00678 154 PLSEEALLQWLIRQ----GISE-EAAELLLALAGG 183 (188)
T ss_pred CCCHHHHHHHHHHc----CCCH-HHHHHHHHHcCC
Confidence 99999999988876 2332 225555555544
No 187
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.34 E-value=2.3e-11 Score=131.83 Aligned_cols=199 Identities=24% Similarity=0.316 Sum_probs=130.2
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhH
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQ 250 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~ 250 (431)
+..|.+++|.+..++.+.+.+..... ...+|||+|++|||||++|++++... +.+|+.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~-----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQ-----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 35788999999999999888875433 34689999999999999999999864 56999999976532
Q ss_pred -----hhhcchHH-------HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC------C
Q psy15151 251 -----MFIGDGAK-------LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG------F 312 (431)
Q Consensus 251 -----~~~g~~~~-------~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~------~ 312 (431)
.++|.... .....|+.+. .++||||||+.+ +.+.|..|+.+++...- .
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCC
Confidence 23332111 1122344443 359999999999 88999999999976321 1
Q ss_pred CCCCCeEEEEEeCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHHhc----CCCCC-CCC---HH
Q psy15151 313 SSTADIKVIAATNRV-------DILDPALLRSGRLD-RKIEFPHPNE--EARARIMQIHSRK----MNVSP-DVN---YE 374 (431)
Q Consensus 313 ~~~~~v~vI~ttn~~-------~~l~~~l~r~gR~~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~~-~~~---~~ 374 (431)
....++.+|++|+.. ..+...+.. |+. ..|.+|++.. +++..++..++.+ ++... .+. +.
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 113578899999853 123444444 443 2455555533 2333355554433 22211 122 44
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 375 ELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 375 ~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
.|.....-.|.+++++++.+|+..+
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 5555555567799999999988654
No 188
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.32 E-value=4.5e-11 Score=117.71 Aligned_cols=147 Identities=24% Similarity=0.373 Sum_probs=104.4
Q ss_pred cccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC---------------------
Q psy15151 179 DIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK--------------------- 237 (431)
Q Consensus 179 ~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~--------------------- 237 (431)
+++|.+..+..+..++...-. .+..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~-----------~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR-----------LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC-----------CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 567788888888777663211 234699999999999999999999866
Q ss_pred ---CceEEeehhhhhHhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 238 ---STFLKLAGPQLVQMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 238 ---~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
..++.++.++....- .....++.+.+.... +..-|++|||+|.+ +.+.++.++..+.+
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m-----------t~~A~nallk~lEe-- 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL-----------TEDAANALLKTLEE-- 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhcc--
Confidence 355666665432210 123344444444333 34679999999999 66778888888765
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHH
Q psy15151 311 GFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARI 357 (431)
Q Consensus 311 ~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~I 357 (431)
...+..+|++||.+..+-+.+++ |+ ..+.|++|+.......
T Consensus 136 ---p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 136 ---PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred ---CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHH
Confidence 56788899999999999999999 87 5788888655444433
No 189
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=2.3e-11 Score=119.13 Aligned_cols=177 Identities=18% Similarity=0.250 Sum_probs=122.3
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce----------EEeeh
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF----------LKLAG 245 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~----------i~i~~ 245 (431)
.|++|+|++.+++.+...+... ..+..+||+||+|+||+++|.++|..+-+.- ...+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999999988642 1357899999999999999999999743211 01111
Q ss_pred hhhh--------Hh---------hhc--------chHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcH
Q psy15151 246 PQLV--------QM---------FIG--------DGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDR 296 (431)
Q Consensus 246 ~~l~--------~~---------~~g--------~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~ 296 (431)
+++. .. ..| -....++.+.+.+.. +.+.|++||++|.+ +.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 1111 00 000 011245566555443 34689999999998 67
Q ss_pred HHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHH
Q psy15151 297 EVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEEL 376 (431)
Q Consensus 297 ~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~l 376 (431)
..++.|+..|++ .+ +.++|++|+.++.+-|.+++ |+ ..+.|++|+.++..+++......-. .+.+...+
T Consensus 139 ~aaNaLLK~LEE-----Pp-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l 207 (314)
T PRK07399 139 AAANALLKTLEE-----PG-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPEL 207 (314)
T ss_pred HHHHHHHHHHhC-----CC-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHH
Confidence 777888888876 23 55788888899999999999 87 6899999999999999987643111 11224667
Q ss_pred HHHcCCCCHH
Q psy15151 377 SRSTDDFNGA 386 (431)
Q Consensus 377 a~~~~g~s~~ 386 (431)
+..+.|-.+.
T Consensus 208 ~~~a~Gs~~~ 217 (314)
T PRK07399 208 LALAQGSPGA 217 (314)
T ss_pred HHHcCCCHHH
Confidence 7766665443
No 190
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8.2e-11 Score=125.07 Aligned_cols=168 Identities=21% Similarity=0.306 Sum_probs=134.0
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHH----------cCCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ----------TKSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~----------~~~~~i~i 243 (431)
.-.++-++|.++.++++.+.+.+- ..++-+|.|+||+|||.++..+|.. .+..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~RR-------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSRR-------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhcc-------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 567889999999999999987753 3356789999999999999999985 35678888
Q ss_pred ehhhhhH--hhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15151 244 AGPQLVQ--MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321 (431)
Q Consensus 244 ~~~~l~~--~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI 321 (431)
++..++. +|-|+.+..++.+.+.+....+.||||||||.+.+.....+. ..+..+.|.-.|. .+.+.+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPaLA-------RGeL~~I 303 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPALA-------RGELRCI 303 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHHHh-------cCCeEEE
Confidence 9888864 688999999999999999888999999999999877643331 3445566666653 4677899
Q ss_pred EEeCCCCC-----CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCC
Q psy15151 322 AATNRVDI-----LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMN 366 (431)
Q Consensus 322 ~ttn~~~~-----l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~ 366 (431)
++|+..+. -|+||-| || ..|.+..|+.++-..|++-.-..+.
T Consensus 304 GATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE 350 (786)
T COG0542 304 GATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYE 350 (786)
T ss_pred EeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHH
Confidence 99875332 4789999 99 5789999999999999986554443
No 191
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.32 E-value=2.8e-11 Score=117.85 Aligned_cols=101 Identities=24% Similarity=0.261 Sum_probs=63.1
Q ss_pred CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC------------CCCCChhhhcCCC
Q psy15151 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR------------VDILDPALLRSGR 339 (431)
Q Consensus 272 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~------------~~~l~~~l~r~gR 339 (431)
|+||||||+|.| +.+...-|...++. .-..+||++||+ |..++..|+. |
T Consensus 279 pGVLFIDEvHmL-----------DiEcFsfLnralEs------~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML-----------DIECFSFLNRALES------ELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS-----------BHHHHHHHHHHHTS------TT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc-----------cHHHHHHHHHHhcC------CCCcEEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 799999999999 88888877777743 445568999996 5668889998 8
Q ss_pred cceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCCCHHHHHHHH
Q psy15151 340 LDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDFNGAQCKAVC 392 (431)
Q Consensus 340 ~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~s~~di~~l~ 392 (431)
+ .+|...+++.++..+|++.+++.-.+.-+ -.++.|.......+-+..-+++
T Consensus 340 l-lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi 392 (398)
T PF06068_consen 340 L-LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLI 392 (398)
T ss_dssp E-EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCH
T ss_pred c-EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhh
Confidence 8 68899999999999999999987665521 1244444433333434333333
No 192
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.30 E-value=1.4e-10 Score=110.81 Aligned_cols=190 Identities=19% Similarity=0.285 Sum_probs=124.0
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc---------CCceEEeehhh------hhHhh---hcc-------hHHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT---------KSTFLKLAGPQ------LVQMF---IGD-------GAKLVRDAFAL 266 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~---------~~~~i~i~~~~------l~~~~---~g~-------~~~~~~~lf~~ 266 (431)
..++||+|++|.|||++++.++... ..|++.+.++. +.... +|. ....-.++...
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999752 24677776632 21111 111 12223345566
Q ss_pred HHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC--CCCCChhhhcCCCcceEE
Q psy15151 267 AKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR--VDILDPALLRSGRLDRKI 344 (431)
Q Consensus 267 a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~--~~~l~~~l~r~gR~~~~i 344 (431)
.+...+.+|+|||+|.++.. +..-|+.++.+|..+.+ .-.-.++.++|..- .=.-|+.+.+ ||. .+
T Consensus 141 lr~~~vrmLIIDE~H~lLaG--------s~~~qr~~Ln~LK~L~N-eL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~ 208 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAG--------SYRKQREFLNALKFLGN-ELQIPIVGVGTREAYRALRTDPQLAS--RFE-PF 208 (302)
T ss_pred HHHcCCcEEEeechHHHhcc--------cHHHHHHHHHHHHHHhh-ccCCCeEEeccHHHHHHhccCHHHHh--ccC-Cc
Confidence 67777889999999997543 33446777777766532 12233444444321 2234678888 996 45
Q ss_pred EcCCCC-HHHHHHHHHHHHhcCCCCCCCC--H----HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHH
Q psy15151 345 EFPHPN-EEARARIMQIHSRKMNVSPDVN--Y----EELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMD 414 (431)
Q Consensus 345 ~~~~p~-~~~r~~Il~~~l~~~~~~~~~~--~----~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~ 414 (431)
.+|.-. .++...++..+-..+++....+ - ..|...+.|.. +++..+++.|+..|++.|.+.||.+.+..
T Consensus 209 ~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 209 ELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred cCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 555433 3456667777766666653322 2 34556777776 66999999999999999999999998865
No 193
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4e-12 Score=126.88 Aligned_cols=213 Identities=21% Similarity=0.332 Sum_probs=125.9
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC-----------------
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK----------------- 237 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~----------------- 237 (431)
..|.||+|++.+++.+.-+.. .++++||+||||||||++|+.+..-+.
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 479999999999999876655 568999999999999999998877321
Q ss_pred ------------CceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHH
Q psy15151 238 ------------STFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 305 (431)
Q Consensus 238 ------------~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 305 (431)
+||..-.-+.-...++|.+...--.-...|. .+||||||+-.+ ...+.+.|-+=
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH---~GVLFLDElpef-----------~~~iLe~LR~P 306 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAH---NGVLFLDELPEF-----------KRSILEALREP 306 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeec---CCEEEeeccchh-----------hHHHHHHHhCc
Confidence 0111111111111122221100001111222 259999998765 22222222222
Q ss_pred HHhhc--------CCCCCCCeEEEEEeCCC-----------------------CCCChhhhcCCCcceEEEcCCCCHHHH
Q psy15151 306 LNQLD--------GFSSTADIKVIAATNRV-----------------------DILDPALLRSGRLDRKIEFPHPNEEAR 354 (431)
Q Consensus 306 L~~~~--------~~~~~~~v~vI~ttn~~-----------------------~~l~~~l~r~gR~~~~i~~~~p~~~~r 354 (431)
|+... ......++.+|+++|.. ..+...|++ |||..+.++.++..++
T Consensus 307 LE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~ 384 (490)
T COG0606 307 LENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGEL 384 (490)
T ss_pred cccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHh
Confidence 22210 11123567789999952 225557778 9999999998774332
Q ss_pred H--------------HHHHH------HHhcCCCCCC----------------CCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy15151 355 A--------------RIMQI------HSRKMNVSPD----------------VNYEELSRSTDDFNGAQCKAVCVEAGMI 398 (431)
Q Consensus 355 ~--------------~Il~~------~l~~~~~~~~----------------~~~~~la~~~~g~s~~di~~l~~~A~~~ 398 (431)
. .++.. +..+...... .++...+-..-+++.+....+++-|...
T Consensus 385 ~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTi 464 (490)
T COG0606 385 IRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTI 464 (490)
T ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhh
Confidence 1 11111 1111101111 1122233344567888889999999999
Q ss_pred HHHhCCCCcCHHHHHHHHHH
Q psy15151 399 ALRRGAAIVTHEDFMDAIME 418 (431)
Q Consensus 399 A~~~~~~~It~ed~~~Al~~ 418 (431)
|...+...|...|+.+|+..
T Consensus 465 ADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 465 ADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred hcccCcchhhHHHHHHHHhh
Confidence 99999999999999999864
No 194
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.27 E-value=3.6e-11 Score=102.04 Aligned_cols=126 Identities=32% Similarity=0.458 Sum_probs=82.3
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCc---eEEeehhhhhHh--------------hhcchHHHHHHHHHHHHhCCCeE
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKST---FLKLAGPQLVQM--------------FIGDGAKLVRDAFALAKEKAPAI 274 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~---~i~i~~~~l~~~--------------~~g~~~~~~~~lf~~a~~~~p~v 274 (431)
+..++|+||||||||++++.+|..+... ++.++++..... ...........++..++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3679999999999999999999998775 788877654321 11234555677888888887899
Q ss_pred EEEccccccccCCCCCCCcCcHHHHHHHHHH--HHhhcCCCCCCCeEEEEEeCC-CCCCChhhhcCCCcceEEEcCCC
Q psy15151 275 IFIDELDAIGTKRFDSEKAGDREVQRTMLEL--LNQLDGFSSTADIKVIAATNR-VDILDPALLRSGRLDRKIEFPHP 349 (431)
Q Consensus 275 l~iDEid~l~~~r~~~~~~~~~~~~~~l~~l--L~~~~~~~~~~~v~vI~ttn~-~~~l~~~l~r~gR~~~~i~~~~p 349 (431)
|+|||++.+.... ........ ...........+..+|+++|. ....+..+.+ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999984321 11111110 000011123456778899986 3334444444 88888877654
No 195
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.3e-11 Score=114.07 Aligned_cols=132 Identities=23% Similarity=0.355 Sum_probs=89.2
Q ss_pred cccccCchHHHHHHHHHhhccccChHHHHh-cCCC-CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH-hhh
Q psy15151 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVN-LGIQ-PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ-MFI 253 (431)
Q Consensus 177 ~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~-~g~~-~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~-~~~ 253 (431)
-+-++|++.+++.+.-++....++-..... -.+. ...++||.||+|||||+||+.+|..++.||-.-++..+.+ .|+
T Consensus 60 d~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYV 139 (408)
T COG1219 60 DEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYV 139 (408)
T ss_pred hhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcccc
Confidence 345899999988876555432111100000 0011 1257999999999999999999999999999999988754 578
Q ss_pred cchHHHH-HHHHHHH----HhCCCeEEEEccccccccCCCCC---CCcCcHHHHHHHHHHHHh
Q psy15151 254 GDGAKLV-RDAFALA----KEKAPAIIFIDELDAIGTKRFDS---EKAGDREVQRTMLELLNQ 308 (431)
Q Consensus 254 g~~~~~~-~~lf~~a----~~~~p~vl~iDEid~l~~~r~~~---~~~~~~~~~~~l~~lL~~ 308 (431)
|+--.++ -.++..+ .+...+||+|||||+++.+.... .+.+...+|..|+.+++.
T Consensus 140 GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 140 GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 8765543 3333322 11234599999999998776332 234566789999998875
No 196
>KOG1514|consensus
Probab=99.26 E-value=2.8e-10 Score=117.74 Aligned_cols=224 Identities=21% Similarity=0.335 Sum_probs=148.0
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEeehhh
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKLAGPQ 247 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i~~~~ 247 (431)
..+.+.+.....|...+...+... ..+..+++.|-||||||.+++.+-..+ ...|+.+|+-.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~--------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~ 467 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQ--------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR 467 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCC--------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee
Confidence 345677777777777776655431 123478899999999999999988743 24677787754
Q ss_pred hhH----------hhhcchHH------HHHHHHHHH-HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 248 LVQ----------MFIGDGAK------LVRDAFALA-KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 248 l~~----------~~~g~~~~------~~~~lf~~a-~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
+.+ .+-|+... .+..-|... ....++||+|||+|.|+.+. |.+|..+++...
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt 536 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT 536 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc
Confidence 422 12233211 112222211 12447899999999997653 577888887643
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhhc--CCCcc-eEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCH--
Q psy15151 311 GFSSTADIKVIAATNRVDILDPALLR--SGRLD-RKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNG-- 385 (431)
Q Consensus 311 ~~~~~~~v~vI~ttn~~~~l~~~l~r--~gR~~-~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~-- 385 (431)
..+..++||+.+|..+....-+-. +.|++ ..|.|.+++..+..+|+..++.....-.+-..+-++......+|
T Consensus 537 --~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDa 614 (767)
T KOG1514|consen 537 --LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDA 614 (767)
T ss_pred --CCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccH
Confidence 245678888988876643222211 22665 38999999999999999999987633322224444554444444
Q ss_pred HHHHHHHHHHHHHHHHhCC-------CCcCHHHHHHHHHHHHHh
Q psy15151 386 AQCKAVCVEAGMIALRRGA-------AIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 386 ~di~~l~~~A~~~A~~~~~-------~~It~ed~~~Al~~~~~~ 422 (431)
+....+|++|...|..+.. ..|++-|+..|++++...
T Consensus 615 Rraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 615 RRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred HHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 3445779999999887765 568999999999998764
No 197
>KOG2680|consensus
Probab=99.25 E-value=2.7e-10 Score=107.01 Aligned_cols=133 Identities=22% Similarity=0.282 Sum_probs=102.6
Q ss_pred CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC------------CCCCChhhhcCCC
Q psy15151 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR------------VDILDPALLRSGR 339 (431)
Q Consensus 272 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~------------~~~l~~~l~r~gR 339 (431)
|.||||||+|.| +-+.+..|+..|+. .-..++|++||+ |..++-.|+. |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~------d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN------DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh------ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 689999999998 77777777777653 334557888885 5667778887 7
Q ss_pred cceEEEcCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q psy15151 340 LDRKIEFPHPNEEARARIMQIHSRKMNVSPDV-NYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIME 418 (431)
Q Consensus 340 ~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~ 418 (431)
. .+|...+++.++..+|+++.+.+-.+.-+. .++.|......-+.+.--+++..|.+.|.+++...+..+|+.++++.
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHH
Confidence 6 578888999999999999998765544222 24445555555566777788999999999999999999999999999
Q ss_pred HHHhhh
Q psy15151 419 VQAKKK 424 (431)
Q Consensus 419 ~~~~~~ 424 (431)
+...+.
T Consensus 429 FlD~~R 434 (454)
T KOG2680|consen 429 FLDEKR 434 (454)
T ss_pred Hhhhhh
Confidence 887654
No 198
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.25 E-value=3.3e-11 Score=125.09 Aligned_cols=211 Identities=23% Similarity=0.307 Sum_probs=139.0
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHh-
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQM- 251 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~- 251 (431)
.+.+++|.......+...+..... ...+++|.|++|||||++|++++... +.+|+.++|+.+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR-----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc-----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 467899999888888776653222 44679999999999999999999975 469999999866332
Q ss_pred ----hhcchHHHH-------HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC------CC
Q psy15151 252 ----FIGDGAKLV-------RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF------SS 314 (431)
Q Consensus 252 ----~~g~~~~~~-------~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~------~~ 314 (431)
++|...+.. ...|+.+ ..+.||||||+.| +...|..|+++++...-. ..
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 233221110 1122222 2458999999999 888999999999863211 11
Q ss_pred CCCeEEEEEeCCC-------CCCChhhhcCCCc-ceEEEcCCCCH--HHHHHHHHHHHhcC----CCCC-CC---CHHHH
Q psy15151 315 TADIKVIAATNRV-------DILDPALLRSGRL-DRKIEFPHPNE--EARARIMQIHSRKM----NVSP-DV---NYEEL 376 (431)
Q Consensus 315 ~~~v~vI~ttn~~-------~~l~~~l~r~gR~-~~~i~~~~p~~--~~r~~Il~~~l~~~----~~~~-~~---~~~~l 376 (431)
..++.||+||+.. ..+.+.+.. |+ ...|.+|++.. ++...++..++... +... .+ .+..|
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 348 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAAL 348 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 2467899998753 245666776 66 35666666643 34555666555432 2111 12 24555
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 377 SRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 377 a~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
.......+.++++++++++...+ ....|+.+|+...+
T Consensus 349 ~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 349 TRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 66665567799999999888665 45578888886444
No 199
>PRK04132 replication factor C small subunit; Provisional
Probab=99.24 E-value=3e-10 Score=123.07 Aligned_cols=160 Identities=17% Similarity=0.232 Sum_probs=117.7
Q ss_pred CCCCceeeC--CCCCchHHHHHHHHHHc-----CCceEEeehhhhhHhhhcchHHHHHHHHHHHHhC------CCeEEEE
Q psy15151 211 PPKGVLLYG--PPGTGKTLLARACAAQT-----KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK------APAIIFI 277 (431)
Q Consensus 211 ~~~~vLl~G--ppGtGKT~lakala~~~-----~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~------~p~vl~i 277 (431)
|+-+-+..| |++.|||++|+++|+++ +.+++.+|+++.. +...++.+...+... ++.|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 334567789 99999999999999987 4579999998642 223455555433221 2469999
Q ss_pred ccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHH
Q psy15151 278 DELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARI 357 (431)
Q Consensus 278 DEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~I 357 (431)
||+|.| +.+.|+.|+.++++ ...++.+|+++|.+..+.+++++ |+ ..+.|++|+.++....
T Consensus 637 DEaD~L-----------t~~AQnALLk~lEe-----p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 637 DEADAL-----------TQDAQQALRRTMEM-----FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKR 697 (846)
T ss_pred ECcccC-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHH
Confidence 999999 67788888888875 35678899999999999999999 87 6899999999999998
Q ss_pred HHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15151 358 MQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAG 396 (431)
Q Consensus 358 l~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~ 396 (431)
+...+.+.++. ++..+..++..+.|-. +..-++++.++
T Consensus 698 L~~I~~~Egi~i~~e~L~~Ia~~s~GDl-R~AIn~Lq~~~ 736 (846)
T PRK04132 698 LRYIAENEGLELTEEGLQAILYIAEGDM-RRAINILQAAA 736 (846)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence 88877654443 2334667777666543 33444444433
No 200
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=1.3e-10 Score=114.43 Aligned_cols=133 Identities=21% Similarity=0.279 Sum_probs=96.4
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceE--Eeehh--------------hhh--Hh-h--hcchHHHHHHHHHHHHh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFL--KLAGP--------------QLV--QM-F--IGDGAKLVRDAFALAKE 269 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i--~i~~~--------------~l~--~~-~--~g~~~~~~~~lf~~a~~ 269 (431)
.++.+||+||+|+|||++|+++|+.+.+.-- .-.|. ++. .. . -.-+...+|.+.+.+..
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999997543210 00010 000 00 0 01133556666655543
Q ss_pred ----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEE
Q psy15151 270 ----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIE 345 (431)
Q Consensus 270 ----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~ 345 (431)
+...|++||++|.+ +.+.++.|+..|++ .+.++++|++|+.++.+.|.+++ |+ ..+.
T Consensus 101 ~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LEE-----Pp~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~ 161 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLEE-----PSGDTVLLLISHQPSRLLPTIKS--RC-QQQA 161 (328)
T ss_pred ccccCCCeEEEECChhhC-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChhhCcHHHHh--hc-eeee
Confidence 34679999999999 77788888888876 45788899999999999999999 88 4699
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy15151 346 FPHPNEEARARIMQIHS 362 (431)
Q Consensus 346 ~~~p~~~~r~~Il~~~l 362 (431)
|++|+.++..+.+....
T Consensus 162 ~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 162 CPLPSNEESLQWLQQAL 178 (328)
T ss_pred CCCcCHHHHHHHHHHhc
Confidence 99999999888887543
No 201
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=9.2e-11 Score=115.99 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=107.5
Q ss_pred CcccccC-chHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce--EE------eehh
Q psy15151 176 QYSDIGG-LDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF--LK------LAGP 246 (431)
Q Consensus 176 ~~~~i~G-~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~--i~------i~~~ 246 (431)
.|+.|.| ++.+++.+...+... ..++.+||+||+|+|||++|+++|+.+-+.- -. -+|.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3777888 888888888876531 2456789999999999999999999753321 00 0000
Q ss_pred hhhH---------hhhcc--hHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC
Q psy15151 247 QLVQ---------MFIGD--GAKLVRDAFALAK----EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 311 (431)
Q Consensus 247 ~l~~---------~~~g~--~~~~~~~lf~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~ 311 (431)
.+.. ...|. +...++.+.+.+. .+...|++|||+|.+ +.+.++.|+..|++
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~LEE--- 136 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFLEE--- 136 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHhcC---
Confidence 0000 00011 2234555555443 234569999999998 66777888777765
Q ss_pred CCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHH
Q psy15151 312 FSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQI 360 (431)
Q Consensus 312 ~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~ 360 (431)
.+.++++|++|+.+..+.|.+++ |. ..+.|++|+.++..+.+..
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 45678888899889999999999 77 6899999999988777753
No 202
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.8e-11 Score=113.73 Aligned_cols=85 Identities=29% Similarity=0.394 Sum_probs=62.9
Q ss_pred eEEEEccccccccCCCCCC-CcCcHHHHHHHHHHHHhhc-----CCCCCCCeEEEEEe----CCCCCCChhhhcCCCcce
Q psy15151 273 AIIFIDELDAIGTKRFDSE-KAGDREVQRTMLELLNQLD-----GFSSTADIKVIAAT----NRVDILDPALLRSGRLDR 342 (431)
Q Consensus 273 ~vl~iDEid~l~~~r~~~~-~~~~~~~~~~l~~lL~~~~-----~~~~~~~v~vI~tt----n~~~~l~~~l~r~gR~~~ 342 (431)
+||||||||+++.+...++ ..+...+|+-|+-++..-. |......+++|++. ..|+.|-|+|.- ||..
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCce
Confidence 7999999999998775333 4445567888887776421 22223567777764 357788889876 9999
Q ss_pred EEEcCCCCHHHHHHHHH
Q psy15151 343 KIEFPHPNEEARARIMQ 359 (431)
Q Consensus 343 ~i~~~~p~~~~r~~Il~ 359 (431)
.+++..++.++...||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999888874
No 203
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.22 E-value=4.9e-11 Score=122.96 Aligned_cols=207 Identities=18% Similarity=0.234 Sum_probs=129.1
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHh-
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQM- 251 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~- 251 (431)
.+..++|.+..++.+...+.... ....+++|+|++||||+++|++++... +.+|+.++|..+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA-----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 45678899888888877665322 134679999999999999999999864 468999999876332
Q ss_pred ----hhcchHHH-------HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC--C----CC
Q psy15151 252 ----FIGDGAKL-------VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG--F----SS 314 (431)
Q Consensus 252 ----~~g~~~~~-------~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~--~----~~ 314 (431)
++|...+. ....++.+ ..++||||||+.| +...|..|+++++.... . ..
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCcee
Confidence 22221110 01122223 3469999999999 88999999999986321 0 11
Q ss_pred CCCeEEEEEeCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHHhcC----CCC-CCCC---HHHH
Q psy15151 315 TADIKVIAATNRV-------DILDPALLRSGRLD-RKIEFPHPNE--EARARIMQIHSRKM----NVS-PDVN---YEEL 376 (431)
Q Consensus 315 ~~~v~vI~ttn~~-------~~l~~~l~r~gR~~-~~i~~~~p~~--~~r~~Il~~~l~~~----~~~-~~~~---~~~l 376 (431)
..++.+|+||+.. ..+.+.|.. |+. ..|.+|++.. ++...++..++..+ +.. ..+. +..|
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 349 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRAL 349 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--HhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 2467899998864 345555554 543 3555555533 22333455444432 211 1222 4455
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q psy15151 377 SRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDF 412 (431)
Q Consensus 377 a~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~ 412 (431)
.......+.+++++++.+|+..+ ....|+.+|+
T Consensus 350 ~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 350 EAHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 55555567799999999888654 2334555544
No 204
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.20 E-value=3.1e-10 Score=119.94 Aligned_cols=200 Identities=12% Similarity=0.136 Sum_probs=116.0
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEE-eehh---hh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLK-LAGP---QL 248 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~-i~~~---~l 248 (431)
.+..+++++|.++.+..+..++..... +..+...++|+||||||||++++.+|+.++..++. .+.. ..
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~--------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVL--------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhccc--------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 367899999999999999887764211 12244559999999999999999999987765433 1111 00
Q ss_pred hH---------hhh---cchHHHHHHHHHHHH----------hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHH-H
Q psy15151 249 VQ---------MFI---GDGAKLVRDAFALAK----------EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE-L 305 (431)
Q Consensus 249 ~~---------~~~---g~~~~~~~~lf~~a~----------~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~-l 305 (431)
.. ..+ ......++.++..+. .....|||||||+.+.... .. .+..+++ .
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~-------~~-~lq~lLr~~ 222 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD-------TR-ALHEILRWK 222 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh-------HH-HHHHHHHHH
Confidence 00 000 112223334444443 2346799999999875321 22 2222322 2
Q ss_pred HHhhcCCCCCCCeEEEEEeCC-CC--------C------CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCC--C
Q psy15151 306 LNQLDGFSSTADIKVIAATNR-VD--------I------LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNV--S 368 (431)
Q Consensus 306 L~~~~~~~~~~~v~vI~ttn~-~~--------~------l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~--~ 368 (431)
.. ..+.+.+|++++. +. . +.+++++..|+ .+|.|++.+.....+.|...+..... .
T Consensus 223 ~~------e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~ 295 (637)
T TIGR00602 223 YV------SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNG 295 (637)
T ss_pred hh------cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccc
Confidence 21 1234445554441 11 1 33677753355 48999999999988877776654221 1
Q ss_pred CC------CCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 369 PD------VNYEELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 369 ~~------~~~~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
.+ ..+..|+. .+.+|++.++...-+.+
T Consensus 296 ~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 296 EKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSS 328 (637)
T ss_pred cccccCCHHHHHHHHH----hCCChHHHHHHHHHHHH
Confidence 11 12444544 45577777766555543
No 205
>KOG0745|consensus
Probab=99.19 E-value=7.9e-10 Score=108.59 Aligned_cols=96 Identities=32% Similarity=0.512 Sum_probs=72.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH-hhhcchH-HHHHHHHHHH----HhCCCeEEEEccccccccC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ-MFIGDGA-KLVRDAFALA----KEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~-~~~g~~~-~~~~~lf~~a----~~~~p~vl~iDEid~l~~~ 286 (431)
.+|||.||+|+|||+||+.||+-++.||..++|..+.+ .|+|+-. ..+..++..| .+....|+||||+|++..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 47999999999999999999999999999999998854 5777743 3344444333 2233569999999999744
Q ss_pred CCC---CCCcCcHHHHHHHHHHHHh
Q psy15151 287 RFD---SEKAGDREVQRTMLELLNQ 308 (431)
Q Consensus 287 r~~---~~~~~~~~~~~~l~~lL~~ 308 (431)
..+ +.+.+...+|..|+.+++.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 322 2244567889999999875
No 206
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.17 E-value=3.8e-10 Score=110.91 Aligned_cols=167 Identities=17% Similarity=0.169 Sum_probs=109.3
Q ss_pred Ccc-cccCchHHHHHHHHHhhccccChHHHHhcCCC-CCCCceeeCCCCCchHHHHHHHHHHcCC-------ceEEeeh-
Q psy15151 176 QYS-DIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQ-PPKGVLLYGPPGTGKTLLARACAAQTKS-------TFLKLAG- 245 (431)
Q Consensus 176 ~~~-~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~-~~~~vLl~GppGtGKT~lakala~~~~~-------~~i~i~~- 245 (431)
-|+ ++.|+++.+.++.+++..... |.. ..+.++|+||||+|||++|++|++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~ 119 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWN 119 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEec
Confidence 455 899999999999988875432 222 3366899999999999999999998765 6666654
Q ss_pred ---hhhhHhhhcchHHH---------------------------------------------------------------
Q psy15151 246 ---PQLVQMFIGDGAKL--------------------------------------------------------------- 259 (431)
Q Consensus 246 ---~~l~~~~~g~~~~~--------------------------------------------------------------- 259 (431)
+.+.+..++-.+..
T Consensus 120 ~~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~ 199 (361)
T smart00763 120 GEESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDEN 199 (361)
T ss_pred CCCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCC
Confidence 22211111100000
Q ss_pred ---HHHHHH-----HH-----------------HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC--
Q psy15151 260 ---VRDAFA-----LA-----------------KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF-- 312 (431)
Q Consensus 260 ---~~~lf~-----~a-----------------~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~-- 312 (431)
+..+.. .+ .+...+|+-|+|+.+. +.+++..|+.++++..-.
T Consensus 200 ~qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~-----------~~~~l~~LL~~~qE~~v~~~ 268 (361)
T smart00763 200 NQDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKA-----------DIKFLHPLLTATQEGNIKGT 268 (361)
T ss_pred cccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcC-----------CHHHHHHHhhhhhcceEecC
Confidence 010000 00 0011268888888886 888888888888874321
Q ss_pred ----CCCCCeEEEEEeCCCC-------CCChhhhcCCCcceEEEcCCC-CHHHHHHHHHHHHhc
Q psy15151 313 ----SSTADIKVIAATNRVD-------ILDPALLRSGRLDRKIEFPHP-NEEARARIMQIHSRK 364 (431)
Q Consensus 313 ----~~~~~v~vI~ttn~~~-------~l~~~l~r~gR~~~~i~~~~p-~~~~r~~Il~~~l~~ 364 (431)
.-.-+.+||++||..+ ....+|++ |+. .|.+|.| +..+-.+|.+..+..
T Consensus 269 ~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 269 GGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred CcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhcc
Confidence 1123567899999763 45789999 996 7888855 667888888877754
No 207
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.17 E-value=2.2e-10 Score=110.05 Aligned_cols=200 Identities=23% Similarity=0.326 Sum_probs=134.3
Q ss_pred CCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL 248 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l 248 (431)
.+...|+.++|.+...+.+.+......- -...+||.|.+||||-.+||+.+..+ ..||+.++|..+
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~Am-----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKLAM-----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHhhc-----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 3567899999999998888776553211 22569999999999999999988754 569999999866
Q ss_pred hH-----hhhcchH--HHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC------CCCC
Q psy15151 249 VQ-----MFIGDGA--KLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG------FSST 315 (431)
Q Consensus 249 ~~-----~~~g~~~--~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~------~~~~ 315 (431)
.. .++|..+ .....+|+.|..+ .+|+|||..+ ++..|..|+++|+...- ....
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRVGee~Ev~ 332 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRVGEDHEVH 332 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc-----------CHHHHHHHHHHhcCCceeecCCcceEE
Confidence 43 3455544 3345689988776 8999999998 88999999999987321 1123
Q ss_pred CCeEEEEEeCCC-------CCCChhhhcCCCcceEEEcCCCCHHHHHH--------HHHHHHhcCCCC-CCCC---HHHH
Q psy15151 316 ADIKVIAATNRV-------DILDPALLRSGRLDRKIEFPHPNEEARAR--------IMQIHSRKMNVS-PDVN---YEEL 376 (431)
Q Consensus 316 ~~v~vI~ttn~~-------~~l~~~l~r~gR~~~~i~~~~p~~~~r~~--------Il~~~l~~~~~~-~~~~---~~~l 376 (431)
.+|.||+||..+ ..+...+.- |+. +..+..|...+|.+ ++..+..+++.. +..+ +..+
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L 409 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVL 409 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Confidence 578899999753 223333333 442 44555555444422 334455555554 2233 3344
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 377 SRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 377 a~~~~g~s~~di~~l~~~A~~~A 399 (431)
...-..-+.+++.+++.+|+...
T Consensus 410 ~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 410 TRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHcCCCccHHHHHHHHHHHHHHh
Confidence 44444456788999888888665
No 208
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.16 E-value=6.8e-11 Score=102.11 Aligned_cols=126 Identities=26% Similarity=0.449 Sum_probs=86.2
Q ss_pred cCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC---CceEEeehhhhhHhhhcchH
Q psy15151 181 GGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK---STFLKLAGPQLVQMFIGDGA 257 (431)
Q Consensus 181 ~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~---~~~i~i~~~~l~~~~~g~~~ 257 (431)
+|....++++.+.+..... ...+|+|+|++||||+++|++++.... .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~-----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK-----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC-----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHHhC-----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 5778888888888775443 447899999999999999999999755 477777776543
Q ss_pred HHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC-------CC
Q psy15151 258 KLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD-------IL 330 (431)
Q Consensus 258 ~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~-------~l 330 (431)
..+++.+ ..++|||+|+|.| +.+.|..|.+++.... ..++.+|+++..+- .+
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~~l~~l~~~~~~ 120 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQDLEELVEEGRF 120 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC-CCCHHHHSTH
T ss_pred ---HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCCCHHHHhhccch
Confidence 2344444 4559999999999 8889999999998732 45667787776432 24
Q ss_pred ChhhhcCCCcc-eEEEcCC
Q psy15151 331 DPALLRSGRLD-RKIEFPH 348 (431)
Q Consensus 331 ~~~l~r~gR~~-~~i~~~~ 348 (431)
++.|.. |+. ..|.+|+
T Consensus 121 ~~~L~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 121 SPDLYY--RLSQLEIHLPP 137 (138)
T ss_dssp HHHHHH--HCSTCEEEE--
T ss_pred hHHHHH--HhCCCEEeCCC
Confidence 555555 554 3666665
No 209
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.15 E-value=3.6e-10 Score=118.84 Aligned_cols=197 Identities=16% Similarity=0.125 Sum_probs=138.2
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehhhhhHhhhcchH--H--------HHHHHHHHHHhCCCeEEEEccc
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGPQLVQMFIGDGA--K--------LVRDAFALAKEKAPAIIFIDEL 280 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~~l~~~~~g~~~--~--------~~~~lf~~a~~~~p~vl~iDEi 280 (431)
.||+|.|++|||||+++++++.-+.. ||+.+..+.-...++|... . .-..++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 68999999999999999999998754 8888776655555665431 1 11223333333 49999999
Q ss_pred cccccCCCCCCCcCcHHHHHHHHHHHHhh------cCC--CCCCCeEEEEEeCCC---CCCChhhhcCCCcceEEEcCCC
Q psy15151 281 DAIGTKRFDSEKAGDREVQRTMLELLNQL------DGF--SSTADIKVIAATNRV---DILDPALLRSGRLDRKIEFPHP 349 (431)
Q Consensus 281 d~l~~~r~~~~~~~~~~~~~~l~~lL~~~------~~~--~~~~~v~vI~ttn~~---~~l~~~l~r~gR~~~~i~~~~p 349 (431)
..+ ++.++..|++.++.. ++. ....++++|++-|.. ..++++++. ||+..+.++.|
T Consensus 103 n~~-----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERL-----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccC-----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 998 888889999888863 222 234678888875432 348889999 99999999988
Q ss_pred CHHHHH-------HHHH--HHHhcCCCCCCCCHHHHHHH--cCCC-CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q psy15151 350 NEEARA-------RIMQ--IHSRKMNVSPDVNYEELSRS--TDDF-NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 350 ~~~~r~-------~Il~--~~l~~~~~~~~~~~~~la~~--~~g~-s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~ 417 (431)
+..+.. .|.. ..+.+..++. ..+..++.. ..|. +.+--..+++-|...|..+++..|+.+|+.+|+.
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v~~-~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~ 248 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGPPP-EAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAAR 248 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 765432 2332 2223333322 123444332 2343 5566677889999999999999999999999999
Q ss_pred HHHHhhhcc
Q psy15151 418 EVQAKKKAN 426 (431)
Q Consensus 418 ~~~~~~~~~ 426 (431)
.+..++...
T Consensus 249 lvL~hR~~~ 257 (584)
T PRK13406 249 LVLAPRATR 257 (584)
T ss_pred HHHHhhccC
Confidence 999987643
No 210
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.15 E-value=9.1e-12 Score=104.20 Aligned_cols=107 Identities=31% Similarity=0.402 Sum_probs=64.9
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehh-hh-hHhhhcch-----HHH----HHHHHHHHHhCCCeEEEEccccc
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP-QL-VQMFIGDG-----AKL----VRDAFALAKEKAPAIIFIDELDA 282 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~-~l-~~~~~g~~-----~~~----~~~lf~~a~~~~p~vl~iDEid~ 282 (431)
++||.|+||+|||++|+++|...+..|.+|.+. ++ .+...|.. .+. ..-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999999774 33 22233321 000 01112 24999999999
Q ss_pred cccCCCCCCCcCcHHHHHHHHHHHHhhc----C--CCCCCCeEEEEEeCCCC-----CCChhhhcCCCc
Q psy15151 283 IGTKRFDSEKAGDREVQRTMLELLNQLD----G--FSSTADIKVIAATNRVD-----ILDPALLRSGRL 340 (431)
Q Consensus 283 l~~~r~~~~~~~~~~~~~~l~~lL~~~~----~--~~~~~~v~vI~ttn~~~-----~l~~~l~r~gR~ 340 (431)
. .+.+|..+++.+.+.. + ..-..+++||+|-|+.+ .++.+++. ||
T Consensus 74 a-----------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A-----------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C-----------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 6 8889999999999842 2 12245788999999866 47778888 87
No 211
>KOG0991|consensus
Probab=99.14 E-value=5.1e-10 Score=101.81 Aligned_cols=182 Identities=19% Similarity=0.268 Sum_probs=113.6
Q ss_pred ccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC-----ceEEee
Q psy15151 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS-----TFLKLA 244 (431)
Q Consensus 170 ~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~-----~~i~i~ 244 (431)
.+..+..+.||+|.++.+.++.-.... | ...+++|.||||||||+-+.++|+++=. .++.++
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 344467789999999999998765442 1 3357999999999999999999997432 345555
Q ss_pred hhhhhHhhhcchHHHHH---HHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCC
Q psy15151 245 GPQLVQMFIGDGAKLVR---DAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTAD 317 (431)
Q Consensus 245 ~~~l~~~~~g~~~~~~~---~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~ 317 (431)
.|+- .+-..+| ..|.+-+- +.-.||++||+|.+ ....|..|.+.++... ..
T Consensus 86 ASde------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtMEiyS-----~t 143 (333)
T KOG0991|consen 86 ASDE------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTMEIYS-----NT 143 (333)
T ss_pred Cccc------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHHHHHc-----cc
Confidence 5431 1122222 23433322 22359999999998 4455666666665432 33
Q ss_pred eEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHH
Q psy15151 318 IKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCV 393 (431)
Q Consensus 318 v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~ 393 (431)
..+..++|..+.+-..+.+ |+. .+.|...+..+...-+....+.-.+. .+..++.+...++ +|+++.++
T Consensus 144 tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~----GDMRQalN 213 (333)
T KOG0991|consen 144 TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQ----GDMRQALN 213 (333)
T ss_pred chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhcc----chHHHHHH
Confidence 4477888988888777777 663 56677777776655554444332322 2223555555444 34554444
No 212
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.14 E-value=1.4e-09 Score=117.44 Aligned_cols=228 Identities=18% Similarity=0.247 Sum_probs=136.4
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHH--------hcCCCCCCCceeeCCCCCchHHHHHHHHHHcC-------CceEE
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFV--------NLGIQPPKGVLLYGPPGTGKTLLARACAAQTK-------STFLK 242 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~--------~~g~~~~~~vLl~GppGtGKT~lakala~~~~-------~~~i~ 242 (431)
-.|.|.+..+..+.-.+.........+. ...+...-+|||.|+||||||.+|+++++... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 4567777777766554433221100000 01123345899999999999999999998543 34444
Q ss_pred eehhhhhHhhhcc-hHHH--HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc------CC-
Q psy15151 243 LAGPQLVQMFIGD-GAKL--VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD------GF- 312 (431)
Q Consensus 243 i~~~~l~~~~~g~-~~~~--~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~------~~- 312 (431)
+++..... +.+. +... -.+.+..|. .++++|||++.+ +...+..|+++|++-. |.
T Consensus 530 vgLTa~~~-~~d~~tG~~~le~GaLvlAd---gGtL~IDEidkm-----------s~~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 530 VGLTASIK-FNESDNGRAMIQPGAVVLAN---GGVCCIDELDKC-----------HNESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred ccccchhh-hcccccCcccccCCcEEEcC---CCeEEecchhhC-----------CHHHHHHHHHHHhCCEEEEecCCcc
Confidence 44443321 0110 0000 011122222 359999999998 7788899999987632 11
Q ss_pred -CCCCCeEEEEEeCCCC-------------CCChhhhcCCCcceEEE-cCCCCHHHHHHHHHHHHhcC------------
Q psy15151 313 -SSTADIKVIAATNRVD-------------ILDPALLRSGRLDRKIE-FPHPNEEARARIMQIHSRKM------------ 365 (431)
Q Consensus 313 -~~~~~v~vI~ttn~~~-------------~l~~~l~r~gR~~~~i~-~~~p~~~~r~~Il~~~l~~~------------ 365 (431)
.-+.++.||+|+|+.. .|++++++ |||.++. ++.|+.+.=..|..+.++..
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~ 672 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDE 672 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccc
Confidence 1235788999999742 27789999 9998654 45666654333332222100
Q ss_pred ---------------------------------------CCCCCCC---HHHHH----H-Hc------------------
Q psy15151 366 ---------------------------------------NVSPDVN---YEELS----R-ST------------------ 380 (431)
Q Consensus 366 ---------------------------------------~~~~~~~---~~~la----~-~~------------------ 380 (431)
.+.+.+. .+.|. . +.
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~ 752 (915)
T PTZ00111 673 DTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDD 752 (915)
T ss_pred cchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhcccccccccccccccc
Confidence 0011010 01111 1 11
Q ss_pred --------C-----CCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q psy15151 381 --------D-----DFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 381 --------~-----g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~ 422 (431)
. ..+.+.|+++++-|...|..+-+..|+.+|+..|++-+...
T Consensus 753 ~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~s 807 (915)
T PTZ00111 753 DDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSS 807 (915)
T ss_pred ccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHHH
Confidence 1 14689999999999999999999999999999999988754
No 213
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.14 E-value=2.3e-10 Score=118.29 Aligned_cols=209 Identities=23% Similarity=0.306 Sum_probs=128.6
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHh-
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQM- 251 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~- 251 (431)
.+..++|.+.....+.+.+..... ...+++++|++||||+++|++++... +.+|+.++|..+...
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIAL-----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcC-----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH
Confidence 455688888888777766554322 34679999999999999999998864 468999999866332
Q ss_pred ----hhcchHHHH-------HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc----CC--CC
Q psy15151 252 ----FIGDGAKLV-------RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD----GF--SS 314 (431)
Q Consensus 252 ----~~g~~~~~~-------~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~----~~--~~ 314 (431)
++|...+.. ...+..+ ..++||||||+.| +...|..|+++++... +. ..
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 233211100 1122222 2459999999999 8888999999987632 10 11
Q ss_pred CCCeEEEEEeCCC-------CCCChhhhcCCCcceEEEcCCCCHHHHH----HHHHHHHhcC----CCC-CCCC---HHH
Q psy15151 315 TADIKVIAATNRV-------DILDPALLRSGRLDRKIEFPHPNEEARA----RIMQIHSRKM----NVS-PDVN---YEE 375 (431)
Q Consensus 315 ~~~v~vI~ttn~~-------~~l~~~l~r~gR~~~~i~~~~p~~~~r~----~Il~~~l~~~----~~~-~~~~---~~~ 375 (431)
..++.||+|||.. ..+.+.+.. |+. .+.+..|+..+|. .++..++.++ ... ..++ +..
T Consensus 276 ~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 352 (457)
T PRK11361 276 KVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSL 352 (457)
T ss_pred eeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 2468899999853 234444444 442 2444444444443 3444444332 111 1222 344
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q psy15151 376 LSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDA 415 (431)
Q Consensus 376 la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~A 415 (431)
|.......+.+++++++.+|+..+ ....|+.+|+...
T Consensus 353 L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~~ 389 (457)
T PRK11361 353 LTAWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPPQ 389 (457)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChHh
Confidence 555555567799999999887654 3445777776543
No 214
>PRK15115 response regulator GlrR; Provisional
Probab=99.13 E-value=1.9e-10 Score=118.57 Aligned_cols=207 Identities=19% Similarity=0.256 Sum_probs=125.0
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHh---
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQM--- 251 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~--- 251 (431)
..++|....+..+.+.+..... ....++|+|++|||||++|++++... +.+|+.++|..+...
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~ 202 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQ-----------SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLE 202 (444)
T ss_pred hcccccCHHHHHHHHHHHhhcc-----------CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH
Confidence 3577777777766665543222 33579999999999999999999874 479999999865332
Q ss_pred --hhcchHHH-------HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC--CC----CCC
Q psy15151 252 --FIGDGAKL-------VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG--FS----STA 316 (431)
Q Consensus 252 --~~g~~~~~-------~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~--~~----~~~ 316 (431)
++|...+. ...+++.+ ..++|||||||.| +...|..|+.+++.... .. ...
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~~~ 268 (444)
T PRK15115 203 SELFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDIDI 268 (444)
T ss_pred HHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCceeee
Confidence 22221110 01122222 2459999999999 88899999999876321 11 123
Q ss_pred CeEEEEEeCCC-------CCCChhhhcCCCcceEEEcCCCCHHHHH----HHHHHHHhcC----CCC-CCCC---HHHHH
Q psy15151 317 DIKVIAATNRV-------DILDPALLRSGRLDRKIEFPHPNEEARA----RIMQIHSRKM----NVS-PDVN---YEELS 377 (431)
Q Consensus 317 ~v~vI~ttn~~-------~~l~~~l~r~gR~~~~i~~~~p~~~~r~----~Il~~~l~~~----~~~-~~~~---~~~la 377 (431)
++.+|+||+.. ..+.+.+.. |+. .+.+..|+..+|. .++..+++.+ ... ..++ +..|.
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~l~~--~l~-~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 345 (444)
T PRK15115 269 DVRIISATHRDLPKAMARGEFREDLYY--RLN-VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLM 345 (444)
T ss_pred eEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 67899998853 122233332 332 3444445555543 3445444332 111 1122 45566
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q psy15151 378 RSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDA 415 (431)
Q Consensus 378 ~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~A 415 (431)
......+.+++++++..|+..+ ....|+.+++...
T Consensus 346 ~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 380 (444)
T PRK15115 346 TASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQA 380 (444)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhhh
Confidence 6665667799999999887654 3446777766543
No 215
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.13 E-value=2.8e-10 Score=117.92 Aligned_cols=210 Identities=21% Similarity=0.306 Sum_probs=136.8
Q ss_pred cccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHh--
Q psy15151 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQM-- 251 (431)
Q Consensus 177 ~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~-- 251 (431)
...++|.......+...+.... .....+++.|++||||+++|++++... +.+|+.++|..+...
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~ 201 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS-----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI 201 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh-----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH
Confidence 3568888888888877665422 134679999999999999999999864 469999999765332
Q ss_pred ---hhcchHHHH-------HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC------CCC
Q psy15151 252 ---FIGDGAKLV-------RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF------SST 315 (431)
Q Consensus 252 ---~~g~~~~~~-------~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~------~~~ 315 (431)
++|...+.. ...++. ...++||||||+.| +.+.|..|+++++..... ...
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~ 267 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIK 267 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceee
Confidence 223211100 011222 23469999999999 788899999999763211 112
Q ss_pred CCeEEEEEeCCC-------CCCChhhhcCCCcc-eEEEcCCCC--HHHHHHHHHHHHhcC----CCC-CCCC---HHHHH
Q psy15151 316 ADIKVIAATNRV-------DILDPALLRSGRLD-RKIEFPHPN--EEARARIMQIHSRKM----NVS-PDVN---YEELS 377 (431)
Q Consensus 316 ~~v~vI~ttn~~-------~~l~~~l~r~gR~~-~~i~~~~p~--~~~r~~Il~~~l~~~----~~~-~~~~---~~~la 377 (431)
.++.||++|+.. ..+.+.+.. |+. ..|.+|++. .++...++..++... +.. ..++ +..|.
T Consensus 268 ~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 345 (463)
T TIGR01818 268 VDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLK 345 (463)
T ss_pred eeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 367789998753 245556665 554 377777776 456666666655432 211 1222 34455
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 378 RSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 378 ~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
......|.++|++++..|+..+ ....|+.+|+...+
T Consensus 346 ~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 346 QLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 5444456699999999988765 44578888887555
No 216
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.13 E-value=4.2e-10 Score=99.89 Aligned_cols=134 Identities=24% Similarity=0.335 Sum_probs=90.6
Q ss_pred CchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc----------------------
Q psy15151 182 GLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST---------------------- 239 (431)
Q Consensus 182 G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~---------------------- 239 (431)
|++..++.+...+..- ..|..+||+||+|+||+++|+++|..+-..
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 7888888888877642 245679999999999999999999964321
Q ss_pred -eEEeehhhhhHhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCC
Q psy15151 240 -FLKLAGPQLVQMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS 314 (431)
Q Consensus 240 -~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~ 314 (431)
++.++...... .-....++.+...+.. +.+.|++||++|.| +.+.++.|+..|++ .
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LEe-----p 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLEE-----P 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHS-----T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhcC-----C
Confidence 11121111000 0123455655555433 34679999999999 88889999999987 5
Q ss_pred CCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCC
Q psy15151 315 TADIKVIAATNRVDILDPALLRSGRLDRKIEFPHP 349 (431)
Q Consensus 315 ~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p 349 (431)
..++++|++|+.++.+.|.+++ |. ..+.|+++
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 6789999999999999999999 88 56777654
No 217
>PRK08116 hypothetical protein; Validated
Probab=99.11 E-value=9.5e-10 Score=105.57 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=80.5
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhhhcc----hHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMFIGD----GAKLVRDAFALAKEKAPAIIFIDELDAIG 284 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~~g~----~~~~~~~lf~~a~~~~p~vl~iDEid~l~ 284 (431)
+.+++|+|++|||||+||.++++.+ +.+++.++.++++..+... .......+++... ...+|+|||++..-
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999974 6788899988877654321 1111223343333 33599999996521
Q ss_pred cCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC-C----CChhhhcCCCc---ceEEEcCCCCH
Q psy15151 285 TKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD-I----LDPALLRSGRL---DRKIEFPHPNE 351 (431)
Q Consensus 285 ~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~-~----l~~~l~r~gR~---~~~i~~~~p~~ 351 (431)
.....+..|.++++.... .+..+|+|||.+. . ++..+.+ |+ ...|.+..++.
T Consensus 192 ---------~t~~~~~~l~~iin~r~~----~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ---------DTEWAREKVYNIIDSRYR----KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ---------CCHHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 134556778888876431 2334888888642 2 4556666 64 34577777765
No 218
>KOG2227|consensus
Probab=99.11 E-value=3.4e-09 Score=105.31 Aligned_cols=225 Identities=20% Similarity=0.240 Sum_probs=151.3
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC----C-ceEEeehhhhh
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK----S-TFLKLAGPQLV 249 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~----~-~~i~i~~~~l~ 249 (431)
..-..+.|.+...+.+.+++..++... .++++.+.|-||||||.+...+-.... . ..++++|..+.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~---------t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~ 217 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELN---------TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT 217 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcc---------cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc
Confidence 345778999999999999888665433 678999999999999999987766432 2 44788886431
Q ss_pred ------Hh----h----hcchHH-HHHHHHH-HHHhC-CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC
Q psy15151 250 ------QM----F----IGDGAK-LVRDAFA-LAKEK-APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 312 (431)
Q Consensus 250 ------~~----~----~g~~~~-~~~~lf~-~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~ 312 (431)
.+ + .+.+.. .....|+ ..... .+-++++||+|.|+.++ +..|+.++.. ..
T Consensus 218 ~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFew-p~- 284 (529)
T KOG2227|consen 218 EASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFEW-PK- 284 (529)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehhc-cc-
Confidence 11 1 122221 2223332 22222 36799999999997442 2344444433 21
Q ss_pred CCCCCeEEEEEeCCCCCCChhhhc----CCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCC--CHHHHHHHcCCCCHH
Q psy15151 313 SSTADIKVIAATNRVDILDPALLR----SGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDV--NYEELSRSTDDFNGA 386 (431)
Q Consensus 313 ~~~~~v~vI~ttn~~~~l~~~l~r----~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~--~~~~la~~~~g~s~~ 386 (431)
....++++|+.+|..+.-|..|-+ .+--...+.|++++.++..+|+...+......... .+...|....|.+|
T Consensus 285 lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG- 363 (529)
T KOG2227|consen 285 LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG- 363 (529)
T ss_pred CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-
Confidence 235678899999987765543332 12234689999999999999999999876655333 35667778888885
Q ss_pred HHH---HHHHHHHHHHHHhCC----------------CCcCHHHHHHHHHHHHHh
Q psy15151 387 QCK---AVCVEAGMIALRRGA----------------AIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 387 di~---~l~~~A~~~A~~~~~----------------~~It~ed~~~Al~~~~~~ 422 (431)
|++ .+|+.|...|....+ ..|..+++..++.++...
T Consensus 364 DlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s 418 (529)
T KOG2227|consen 364 DLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGS 418 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccC
Confidence 344 568888888877643 236688999999887654
No 219
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.8e-09 Score=106.55 Aligned_cols=132 Identities=20% Similarity=0.258 Sum_probs=95.5
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceE---Eeehh--------------hh--hHhh-------------------
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFL---KLAGP--------------QL--VQMF------------------- 252 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i---~i~~~--------------~l--~~~~------------------- 252 (431)
.++.+||+||+|+||+++|+++|..+.+..- .-.|. ++ +...
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 5688999999999999999999997544210 00110 00 0000
Q ss_pred -hc---------chHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCe
Q psy15151 253 -IG---------DGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADI 318 (431)
Q Consensus 253 -~g---------~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v 318 (431)
-| -....++.+.+.+.. +...|++||++|.+ +.+..+.|+..|++ .+.++
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~t 163 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLEE-----PPPGT 163 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhcC-----CCcCc
Confidence 00 122345655554432 34579999999999 77778888888875 67789
Q ss_pred EEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHH
Q psy15151 319 KVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIH 361 (431)
Q Consensus 319 ~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~ 361 (431)
++|++|+.++.+.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 164 ~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 164 VFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 999999999999999999 88 68999999999988887653
No 220
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=5.9e-09 Score=102.23 Aligned_cols=132 Identities=14% Similarity=0.195 Sum_probs=95.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCce--EEeehh--------------hh--hHhhhc--chHHHHHHHHHHHHh-
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTF--LKLAGP--------------QL--VQMFIG--DGAKLVRDAFALAKE- 269 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~--i~i~~~--------------~l--~~~~~g--~~~~~~~~lf~~a~~- 269 (431)
.++.+||+||+|+||+++|+++|..+-+.- -.-.|. ++ +...-| -+...+|.+.+.+..
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 457899999999999999999999653311 000110 11 000001 134456665555433
Q ss_pred ---CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEc
Q psy15151 270 ---KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEF 346 (431)
Q Consensus 270 ---~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~ 346 (431)
+...|++||++|.| +.+.++.|+..|++ ++.++++|.+|+.++.+.|.+++ |. ..+.|
T Consensus 103 ~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLEE-----Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~ 163 (325)
T PRK06871 103 AQQGGNKVVYIQGAERL-----------TEAAANALLKTLEE-----PRPNTYFLLQADLSAALLPTIYS--RC-QTWLI 163 (325)
T ss_pred cccCCceEEEEechhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChHhCchHHHh--hc-eEEeC
Confidence 44579999999999 77778888888876 67788999999999999999999 88 57899
Q ss_pred CCCCHHHHHHHHHHH
Q psy15151 347 PHPNEEARARIMQIH 361 (431)
Q Consensus 347 ~~p~~~~r~~Il~~~ 361 (431)
++|+.++..+.+...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999888877754
No 221
>PRK12377 putative replication protein; Provisional
Probab=98.98 E-value=5.1e-09 Score=99.01 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=68.2
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhhhcchH--HHHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMFIGDGA--KLVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~~g~~~--~~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
..+++|+||||||||+||.++|+.+ +..++.++.++++..+..... .....++... ....+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~-- 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR-- 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC--
Confidence 3689999999999999999999975 567788888887765432110 0112233333 345699999997642
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
.+...+..|.++++.... ....+|.|||..
T Consensus 177 -------~s~~~~~~l~~ii~~R~~----~~~ptiitSNl~ 206 (248)
T PRK12377 177 -------ETKNEQVVLNQIIDRRTA----SMRSVGMLTNLN 206 (248)
T ss_pred -------CCHHHHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 134556788888887432 234478899954
No 222
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=1.2e-08 Score=99.85 Aligned_cols=131 Identities=21% Similarity=0.272 Sum_probs=93.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCce-E---EeehhhhhHh-------hh-------c------chHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTF-L---KLAGPQLVQM-------FI-------G------DGAKLVRDAFAL 266 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~-i---~i~~~~l~~~-------~~-------g------~~~~~~~~lf~~ 266 (431)
.+..+||+||+|+||+++|.++|..+-+.- . .+.+-.++.. ++ | -....++.+.+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 456799999999999999999998643311 0 0111011100 00 1 123445666555
Q ss_pred HHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcce
Q psy15151 267 AKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDR 342 (431)
Q Consensus 267 a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~ 342 (431)
+.. +...|++||++|.| +....+.|+..|++ ...++++|.+|+.++.+.|.+++ |+ .
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~~~fiL~~~~~~~lLpTIrS--RC-q 165 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAI-----------NRAACNALLKTLEE-----PSPGRYLWLISAQPARLPATIRS--RC-Q 165 (319)
T ss_pred HhhCcccCCcEEEEeccHhhh-----------CHHHHHHHHHHhhC-----CCCCCeEEEEECChhhCchHHHh--hh-e
Confidence 543 33479999999999 77778888888876 56788899999999999999999 88 5
Q ss_pred EEEcCCCCHHHHHHHHHH
Q psy15151 343 KIEFPHPNEEARARIMQI 360 (431)
Q Consensus 343 ~i~~~~p~~~~r~~Il~~ 360 (431)
.+.|++|+.++..+.+..
T Consensus 166 ~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred EeeCCCcCHHHHHHHHHH
Confidence 789999999888777764
No 223
>PRK08181 transposase; Validated
Probab=98.97 E-value=8.1e-09 Score=98.81 Aligned_cols=125 Identities=22% Similarity=0.247 Sum_probs=81.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhHhhhcch-HHHHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQMFIGDG-AKLVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~~~~g~~-~~~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
...+++|+||||||||+||.+++.+ .+..++.+++++++..+.... .......+.... .+.+|+|||++.+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~- 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK- 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC-
Confidence 3468999999999999999999974 467788888888877653211 112223444333 456999999988632
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC----------CChhhhcCCCc---ceEEEcCCCCHHH
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI----------LDPALLRSGRL---DRKIEFPHPNEEA 353 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~----------l~~~l~r~gR~---~~~i~~~~p~~~~ 353 (431)
+...+..|.++++...+. -.+|+|||.+-. +..+++. |+ ...|.|...+...
T Consensus 182 --------~~~~~~~Lf~lin~R~~~-----~s~IiTSN~~~~~w~~~~~D~~~a~aild--RL~h~~~~i~~~g~s~R~ 246 (269)
T PRK08181 182 --------DQAETSVLFELISARYER-----RSILITANQPFGEWNRVFPDPAMTLAAVD--RLVHHATIFEMNVESYRR 246 (269)
T ss_pred --------CHHHHHHHHHHHHHHHhC-----CCEEEEcCCCHHHHHHhcCCccchhhHHH--hhhcCceEEecCCccchh
Confidence 345567888999875431 237888886421 2234444 55 2356666655443
No 224
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=1e-08 Score=101.38 Aligned_cols=131 Identities=13% Similarity=0.097 Sum_probs=93.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCc--eEEeehh--------------hh--hHhhh---cchHHHHHHHHHHHH-
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKST--FLKLAGP--------------QL--VQMFI---GDGAKLVRDAFALAK- 268 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~--~i~i~~~--------------~l--~~~~~---g~~~~~~~~lf~~a~- 268 (431)
.+..+||+||+|+||+++|.++|..+-+. --.-.|. ++ +..-. .-+...+|.+.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 45789999999999999999999975321 0000111 11 00000 012344565555443
Q ss_pred ---hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEE
Q psy15151 269 ---EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIE 345 (431)
Q Consensus 269 ---~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~ 345 (431)
.+...|++||++|.| +.+..+.|+..|++ .+.++++|.+|+.++.+.|.+++ |.. .+.
T Consensus 103 ~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~ 163 (334)
T PRK07993 103 HARLGGAKVVWLPDAALL-----------TDAAANALLKTLEE-----PPENTWFFLACREPARLLATLRS--RCR-LHY 163 (334)
T ss_pred ccccCCceEEEEcchHhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChhhChHHHHh--ccc-ccc
Confidence 345679999999999 77788888888876 67789999999999999999999 884 689
Q ss_pred cCCCCHHHHHHHHHH
Q psy15151 346 FPHPNEEARARIMQI 360 (431)
Q Consensus 346 ~~~p~~~~r~~Il~~ 360 (431)
|++|+.++..+.+..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 164 LAPPPEQYALTWLSR 178 (334)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999888877753
No 225
>KOG0741|consensus
Probab=98.96 E-value=7.4e-09 Score=104.04 Aligned_cols=144 Identities=22% Similarity=0.351 Sum_probs=98.0
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh-cchHHHHHHHHHHHHhCCCeEEEEccccccccCCC
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI-GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~-g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~ 288 (431)
.+-.++||+||||+|||.||..+|..++.||+.+-.++-+-.+. ...-..++.+|+-|.+.+-+||++|+|+.|..--
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v- 614 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV- 614 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc-
Confidence 34468999999999999999999999999999987765433221 1123457899999999999999999999985321
Q ss_pred CCCCcCcHHHHHHHHHHHHh-hcCCCCCC-CeEEEEEeCCCCCCCh-hhhcCCCcceEEEcCCCCH-HHHHHHHHH
Q psy15151 289 DSEKAGDREVQRTMLELLNQ-LDGFSSTA-DIKVIAATNRVDILDP-ALLRSGRLDRKIEFPHPNE-EARARIMQI 360 (431)
Q Consensus 289 ~~~~~~~~~~~~~l~~lL~~-~~~~~~~~-~v~vI~ttn~~~~l~~-~l~r~gR~~~~i~~~~p~~-~~r~~Il~~ 360 (431)
.. .+...+.++|.|-- +......+ +.+|++||.+.+.+.. .+.. .|+..+.+|..+. ++..+++..
T Consensus 615 ---pI-GPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 615 ---PI-GPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred ---cc-CchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 11 23334455544433 33333344 4555666665444332 4455 7888999998866 666776653
No 226
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.95 E-value=3.6e-09 Score=108.93 Aligned_cols=207 Identities=21% Similarity=0.263 Sum_probs=122.1
Q ss_pred cccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhh---
Q psy15151 179 DIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMF--- 252 (431)
Q Consensus 179 ~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~--- 252 (431)
.++|.......+...+.... .....++++|++||||+++|++++... +.+|+.++|..+....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~-----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~ 208 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA-----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES 208 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc-----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH
Confidence 46777777777766554322 134779999999999999999998764 4689999998653322
Q ss_pred --hcchHHHH-------HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC--C----CCCCC
Q psy15151 253 --IGDGAKLV-------RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG--F----SSTAD 317 (431)
Q Consensus 253 --~g~~~~~~-------~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~--~----~~~~~ 317 (431)
+|...+.. ...+.. ...++||||||+.| +...|..|+.+++.... . ....+
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (441)
T PRK10365 209 ELFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTISVD 274 (441)
T ss_pred HhcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCceeeec
Confidence 22211110 011222 23569999999999 78888888888876321 0 11236
Q ss_pred eEEEEEeCCCC-------CCChhhhcCCCc-ceEEEcCCCCH--HHHHHHHHHHHhcC----CCC-CCCC---HHHHHHH
Q psy15151 318 IKVIAATNRVD-------ILDPALLRSGRL-DRKIEFPHPNE--EARARIMQIHSRKM----NVS-PDVN---YEELSRS 379 (431)
Q Consensus 318 v~vI~ttn~~~-------~l~~~l~r~gR~-~~~i~~~~p~~--~~r~~Il~~~l~~~----~~~-~~~~---~~~la~~ 379 (431)
+.+|+||+..- .+.+.|.. |+ ...|.+|++.. ++...++..++.++ ... ..+. +..|...
T Consensus 275 ~rii~~t~~~~~~~~~~~~~~~~l~~--~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (441)
T PRK10365 275 VRLIAATHRDLAAEVNAGRFRQDLYY--RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 (441)
T ss_pred eEEEEeCCCCHHHHHHcCCchHHHHH--HhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 77888887532 12223332 22 23444554432 23344555554432 111 1122 3445554
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q psy15151 380 TDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDA 415 (431)
Q Consensus 380 ~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~A 415 (431)
....+.+++.++++.|+..+ ....|+.+|+...
T Consensus 353 ~wpgN~reL~~~~~~~~~~~---~~~~i~~~~l~~~ 385 (441)
T PRK10365 353 DWPGNIRELENAVERAVVLL---TGEYISERELPLA 385 (441)
T ss_pred CCCCHHHHHHHHHHHHHHhC---CCCccchHhCchh
Confidence 54556788889888877653 3445666666543
No 227
>KOG0990|consensus
Probab=98.93 E-value=9.7e-09 Score=97.71 Aligned_cols=164 Identities=20% Similarity=0.192 Sum_probs=111.5
Q ss_pred cccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh
Q psy15151 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL 248 (431)
Q Consensus 169 ~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l 248 (431)
+...+.....++++.++.+..+.+....+ .-.+.|+|||||||||+...+.|..+-.+.-.-++--.
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~~-------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGMP-------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccCC-------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 34455677889999999988887763321 22389999999999999999999987664111111000
Q ss_pred hH--hhhcc-hHHHHHHHHHHHHh-------CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCe
Q psy15151 249 VQ--MFIGD-GAKLVRDAFALAKE-------KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADI 318 (431)
Q Consensus 249 ~~--~~~g~-~~~~~~~lf~~a~~-------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v 318 (431)
+. .-.|- ..+..-..|...+. ..+..+++||+|.+ ..+.|+.|-+.... ...++
T Consensus 99 lnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----------T~~AQnALRRviek-----~t~n~ 162 (360)
T KOG0990|consen 99 LNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----------TRDAQNALRRVIEK-----YTANT 162 (360)
T ss_pred hhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHh-----------hHHHHHHHHHHHHH-----hccce
Confidence 00 00111 11222345555543 25679999999998 67788888875544 34567
Q ss_pred EEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhc
Q psy15151 319 KVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK 364 (431)
Q Consensus 319 ~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~ 364 (431)
.++..+|.+..+.|++.+ |+. .+.|.+.+.......+.+++..
T Consensus 163 rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 163 RFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRES 205 (360)
T ss_pred EEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhc
Confidence 777889999999999998 884 5677888877777777776654
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=2.1e-08 Score=98.09 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=93.8
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceE-Eeehh--------------hhhHhh---hc--chHHHHHHHHHHHHh-
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFL-KLAGP--------------QLVQMF---IG--DGAKLVRDAFALAKE- 269 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i-~i~~~--------------~l~~~~---~g--~~~~~~~~lf~~a~~- 269 (431)
.+..+||+||.|+||+.+|+++|..+-+.-. .-.|. ++..-. .| -+...++.+.+.+..
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 4578999999999999999999996432110 00110 110000 01 123445655544433
Q ss_pred ---CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEc
Q psy15151 270 ---KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEF 346 (431)
Q Consensus 270 ---~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~ 346 (431)
+...|++||++|.+ +....+.|+..|++ .+.++++|++|+.++.+.|.+++ |+ ..+.|
T Consensus 104 ~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLEE-----Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~ 164 (319)
T PRK06090 104 SQLNGYRLFVIEPADAM-----------NESASNALLKTLEE-----PAPNCLFLLVTHNQKRLLPTIVS--RC-QQWVV 164 (319)
T ss_pred cccCCceEEEecchhhh-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChhhChHHHHh--cc-eeEeC
Confidence 34679999999999 67778888888876 56789999999999999999999 88 58899
Q ss_pred CCCCHHHHHHHHHH
Q psy15151 347 PHPNEEARARIMQI 360 (431)
Q Consensus 347 ~~p~~~~r~~Il~~ 360 (431)
++|+.++..+.+..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (319)
T PRK06090 165 TPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999988887764
No 229
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.91 E-value=8.2e-09 Score=97.36 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=68.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhhhcch---HHHHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMFIGDG---AKLVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~~g~~---~~~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
.+++|+|+||||||+|+.++|..+ +..++.++.++++..+.+.. ......+++... .+.+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 589999999999999999999976 67888888888876543321 111223444433 467999999988621
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
+......+.++++... ..+..+|+|||..
T Consensus 177 --------s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 177 --------SRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred --------CHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 2334467778887632 2234588999954
No 230
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=9.7e-09 Score=101.12 Aligned_cols=130 Identities=20% Similarity=0.300 Sum_probs=93.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCc-------------------------eEEeehhhhhHhhhc-----chHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKST-------------------------FLKLAGPQLVQMFIG-----DGAKLV 260 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~-------------------------~i~i~~~~l~~~~~g-----~~~~~~ 260 (431)
.+..+||+||+|+|||++|+.+|..+.+. |+.+....- ..--| -+-..+
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~i 98 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDAV 98 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHHH
Confidence 56789999999999999999999975321 122211000 00001 124456
Q ss_pred HHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhc
Q psy15151 261 RDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLR 336 (431)
Q Consensus 261 ~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r 336 (431)
|.+.+.+.. +...|+++|+++.+ +...++.++.+|++. ..++.+|++|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep-----~~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEP-----PPQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhC-----cCCCEEEEEeCChHhChHHHHH
Confidence 777666654 33579999999999 888888998888773 2346688899989999999998
Q ss_pred CCCcceEEEcCCCCHHHHHHHHHH
Q psy15151 337 SGRLDRKIEFPHPNEEARARIMQI 360 (431)
Q Consensus 337 ~gR~~~~i~~~~p~~~~r~~Il~~ 360 (431)
|+ ..+.|++|+.++..+.+..
T Consensus 163 --Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hh-hhhcCCCCCHHHHHHHHHh
Confidence 77 5788999999988777753
No 231
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.89 E-value=2.1e-08 Score=98.73 Aligned_cols=123 Identities=20% Similarity=0.283 Sum_probs=78.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhhhcc---hHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMFIGD---GAKLVRDAFALAKEKAPAIIFIDELDAIGT 285 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~~g~---~~~~~~~lf~~a~~~~p~vl~iDEid~l~~ 285 (431)
..+++|+||||||||+||.++|+++ +..+++++..+++..+... ........++... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~- 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK- 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC-
Confidence 3789999999999999999999974 6788889998887755321 1111112233333 34599999997752
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC-CC----CChhhhcCCCcc---eEEEcCCCCH
Q psy15151 286 KRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV-DI----LDPALLRSGRLD---RKIEFPHPNE 351 (431)
Q Consensus 286 ~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~-~~----l~~~l~r~gR~~---~~i~~~~p~~ 351 (431)
.+......|..+++..-. .+..+|+|||.+ .. +++.+.+ |+- ..+.|...+.
T Consensus 260 --------~t~~~~~~Lf~iin~R~~----~~k~tIiTSNl~~~el~~~~~eri~S--RL~~~~~~i~~~G~d~ 319 (329)
T PRK06835 260 --------ITEFSKSELFNLINKRLL----RQKKMIISTNLSLEELLKTYSERISS--RLLGNFTLLKFYGEDI 319 (329)
T ss_pred --------CCHHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHhHHHHH--HHHcCCEEEEecCcCh
Confidence 244566778888887432 122378888853 22 3445555 542 2455554443
No 232
>KOG2035|consensus
Probab=98.88 E-value=1e-07 Score=89.07 Aligned_cols=177 Identities=14% Similarity=0.216 Sum_probs=119.0
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC---CceEEeehhhh-
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK---STFLKLAGPQL- 248 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~---~~~i~i~~~~l- 248 (431)
.+.+++.+.+.++....+..... .- .-.++++|||+|+||-+.+.++-+++- .+-+++....+
T Consensus 8 rpksl~~l~~~~e~~~~Lksl~~-~~------------d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~ 74 (351)
T KOG2035|consen 8 RPKSLDELIYHEELANLLKSLSS-TG------------DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFT 74 (351)
T ss_pred CcchhhhcccHHHHHHHHHHhcc-cC------------CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEe
Confidence 35567778888888777766443 11 124799999999999999999988632 11111111110
Q ss_pred ------------hH--------hhhcchHHH-HHHHHHHHHh---------CCCeEEEEccccccccCCCCCCCcCcHHH
Q psy15151 249 ------------VQ--------MFIGDGAKL-VRDAFALAKE---------KAPAIIFIDELDAIGTKRFDSEKAGDREV 298 (431)
Q Consensus 249 ------------~~--------~~~g~~~~~-~~~lf~~a~~---------~~p~vl~iDEid~l~~~r~~~~~~~~~~~ 298 (431)
.+ .-.|...+. +..+...+.+ ....|++|.|+|.| ..+.
T Consensus 75 tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----------T~dA 143 (351)
T KOG2035|consen 75 TPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----------TRDA 143 (351)
T ss_pred cCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----------hHHH
Confidence 00 012333222 2334433322 23479999999999 7788
Q ss_pred HHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCC-CHHHHH
Q psy15151 299 QRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDV-NYEELS 377 (431)
Q Consensus 299 ~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-~~~~la 377 (431)
|..|-+-++.. .+++.+|+..|....+-+++++ |. ..|.+|.|+.++...++...+++-++.-+. -+..|+
T Consensus 144 Q~aLRRTMEkY-----s~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa 215 (351)
T KOG2035|consen 144 QHALRRTMEKY-----SSNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIA 215 (351)
T ss_pred HHHHHHHHHHH-----hcCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHH
Confidence 88888777653 4677899999999999999999 76 579999999999999999988876665332 245566
Q ss_pred HHcC
Q psy15151 378 RSTD 381 (431)
Q Consensus 378 ~~~~ 381 (431)
+.+.
T Consensus 216 ~kS~ 219 (351)
T KOG2035|consen 216 EKSN 219 (351)
T ss_pred HHhc
Confidence 6544
No 233
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.86 E-value=5.8e-09 Score=97.15 Aligned_cols=182 Identities=21% Similarity=0.351 Sum_probs=98.3
Q ss_pred ccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC---ceEEeeh-h----hhhHh
Q psy15151 180 IGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS---TFLKLAG-P----QLVQM 251 (431)
Q Consensus 180 i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~---~~i~i~~-~----~l~~~ 251 (431)
++|.++.++.|.+.+.. .+...++|+||+|+|||+|++.+...... ..+++.. . .....
T Consensus 1 F~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 1 FFGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 36888899998886653 14578999999999999999999997632 1111111 0 00000
Q ss_pred h-------------h-----------------cchHHHHHHHHHHHHhCC-CeEEEEccccccc-cCCCCCCCcCcHHHH
Q psy15151 252 F-------------I-----------------GDGAKLVRDAFALAKEKA-PAIIFIDELDAIG-TKRFDSEKAGDREVQ 299 (431)
Q Consensus 252 ~-------------~-----------------g~~~~~~~~lf~~a~~~~-p~vl~iDEid~l~-~~r~~~~~~~~~~~~ 299 (431)
. . ......+..+++.+.... ..||+|||++.+. ... ......
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~ 141 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFL 141 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHH
Confidence 0 0 112334555666655543 4899999999996 211 134444
Q ss_pred HHHHHHHHhhcCCCCCCCeEEEEEeCCCCC------CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC---CC
Q psy15151 300 RTMLELLNQLDGFSSTADIKVIAATNRVDI------LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS---PD 370 (431)
Q Consensus 300 ~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~------l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~---~~ 370 (431)
..+..+++. .....++.+|+++..... -...+.. |+.. +.+++.+.++..+++...++.. .. ++
T Consensus 142 ~~l~~~~~~---~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~ 214 (234)
T PF01637_consen 142 KSLRSLLDS---LLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSD 214 (234)
T ss_dssp HHHHHHHHH-------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC-------H
T ss_pred HHHHHHHhh---ccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCH
Confidence 555555544 233455555555443211 1123334 7776 9999999999999999987766 22 34
Q ss_pred CCHHHHHHHcCCCCHHHH
Q psy15151 371 VNYEELSRSTDDFNGAQC 388 (431)
Q Consensus 371 ~~~~~la~~~~g~s~~di 388 (431)
.+++.+...+.|.. +.|
T Consensus 215 ~~~~~i~~~~gG~P-~~l 231 (234)
T PF01637_consen 215 EDIEEIYSLTGGNP-RYL 231 (234)
T ss_dssp HHHHHHHHHHTT-H-HHH
T ss_pred HHHHHHHHHhCCCH-HHH
Confidence 44666777676554 434
No 234
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.85 E-value=5e-08 Score=101.45 Aligned_cols=203 Identities=14% Similarity=0.218 Sum_probs=120.0
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeeh-hhh---
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG-PQL--- 248 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~-~~l--- 248 (431)
.+.+.+++.-..+-++++..++...+. +..+.+-+||+||||||||++++.||++++..+..-.. ..+
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 356778888888899999998874322 11234567889999999999999999998876655321 110
Q ss_pred ---hHhhhcc---hH---HH---HHHH-HHHHH-----------hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 249 ---VQMFIGD---GA---KL---VRDA-FALAK-----------EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 249 ---~~~~~g~---~~---~~---~~~l-f~~a~-----------~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
...+.+. .. .. .... +...+ ...+.||+|+|+-.++... ...+...|.+
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~~~f~~~L~~ 158 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------TSRFREALRQ 158 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------HHHHHHHHHH
Confidence 0011111 00 00 1111 11111 1246799999998764332 2344555555
Q ss_pred HHHhhcCCCCCC-CeEEEEEe-------CCC--------CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcC---
Q psy15151 305 LLNQLDGFSSTA-DIKVIAAT-------NRV--------DILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKM--- 365 (431)
Q Consensus 305 lL~~~~~~~~~~-~v~vI~tt-------n~~--------~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~--- 365 (431)
++.. ... ++++|+|- |.. ..+++.++...++ .+|.|.+-+..-..+.|...+...
T Consensus 159 ~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~ 232 (519)
T PF03215_consen 159 YLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARS 232 (519)
T ss_pred HHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 5543 222 66666661 111 1466777764444 589999999877777666554432
Q ss_pred -----CCCCCCC-HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy15151 366 -----NVSPDVN-YEELSRSTDDFNGAQCKAVCVEAGMIAL 400 (431)
Q Consensus 366 -----~~~~~~~-~~~la~~~~g~s~~di~~l~~~A~~~A~ 400 (431)
....... ++.|+. .+.+||+.++...-+.|.
T Consensus 233 ~~~~~~~p~~~~~l~~I~~----~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 233 SSGKNKVPDKQSVLDSIAE----SSNGDIRSAINNLQFWCL 269 (519)
T ss_pred hcCCccCCChHHHHHHHHH----hcCchHHHHHHHHHHHhc
Confidence 1111111 455655 345889998887777776
No 235
>PRK06526 transposase; Provisional
Probab=98.84 E-value=7.5e-09 Score=98.43 Aligned_cols=101 Identities=22% Similarity=0.297 Sum_probs=66.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhHhhhcch-HHHHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQMFIGDG-AKLVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~~~~g~~-~~~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
.+.+++|+||||||||+||.+++.+ .+..++.+++++++..+.... .+.....+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC-
Confidence 3468999999999999999999886 356666777777766543111 11122222222 3467999999998622
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
+......+.++++..... ..+|+|||.+
T Consensus 174 --------~~~~~~~L~~li~~r~~~-----~s~IitSn~~ 201 (254)
T PRK06526 174 --------EPEAANLFFQLVSSRYER-----ASLIVTSNKP 201 (254)
T ss_pred --------CHHHHHHHHHHHHHHHhc-----CCEEEEcCCC
Confidence 445667788888764321 2378888865
No 236
>PRK06921 hypothetical protein; Provisional
Probab=98.81 E-value=4.4e-08 Score=93.96 Aligned_cols=104 Identities=21% Similarity=0.221 Sum_probs=64.0
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc----CCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccc-ccc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDA-IGT 285 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~-l~~ 285 (431)
...+++|+||||||||+|+.++|+++ +..++++...+++..+.... ......+... ....+|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCC
Confidence 35789999999999999999999964 56777888776655432111 1112222333 2356999999954 211
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 286 KRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 286 ~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
. ..........|..+++.... .+..+|+|||.
T Consensus 193 ~-----e~~t~~~~~~lf~iin~R~~----~~k~tIitsn~ 224 (266)
T PRK06921 193 K-----PRATEWQIEQMYSVLNYRYL----NHKPILISSEL 224 (266)
T ss_pred C-----ccCCHHHHHHHHHHHHHHHH----CCCCEEEECCC
Confidence 1 01133344567788877432 11236778885
No 237
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.81 E-value=1e-08 Score=105.80 Aligned_cols=171 Identities=25% Similarity=0.313 Sum_probs=108.2
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcC--CceEEeehhhhhHh-----hhcchHHH--------HHHHHHHHHhCCCeEEE
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTK--STFLKLAGPQLVQM-----FIGDGAKL--------VRDAFALAKEKAPAIIF 276 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~--~~~i~i~~~~l~~~-----~~g~~~~~--------~~~lf~~a~~~~p~vl~ 276 (431)
..++++.|.|||||-.+++++..... .||+.++|..+... ++|..++. .+..++.+.. ..+|
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccH
Confidence 36799999999999999999998654 68999999766443 33332222 2233333433 4999
Q ss_pred EccccccccCCCCCCCcCcHHHHHHHHHHHHhh-----cCCCCCCCeEEEEEeCCCCCCChhhhcCCCcc---------e
Q psy15151 277 IDELDAIGTKRFDSEKAGDREVQRTMLELLNQL-----DGFSSTADIKVIAATNRVDILDPALLRSGRLD---------R 342 (431)
Q Consensus 277 iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~-----~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~---------~ 342 (431)
+|||..| .-..|..|+++|++. .+...+.++.||+||++.= ..+.+.|||- .
T Consensus 413 ldeIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~ 478 (606)
T COG3284 413 LDEIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAF 478 (606)
T ss_pred HHHhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCe
Confidence 9999998 788999999999983 3433456788999998631 2344455553 2
Q ss_pred EEEcCCCCH-HHHHHHHHHHHhcCC-CCCCCC---HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 343 KIEFPHPNE-EARARIMQIHSRKMN-VSPDVN---YEELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 343 ~i~~~~p~~-~~r~~Il~~~l~~~~-~~~~~~---~~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
.|.+|++-. .++...+..++.+.. ..-.++ ...|.....--+-+++.+++..++..+
T Consensus 479 ~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 479 VITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred eeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 555555532 233334444433322 222233 333444444446688888888877655
No 238
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.80 E-value=3e-08 Score=96.86 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=65.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhhhcch-HHHHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMFIGDG-AKLVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~~g~~-~~~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
.+.+++|+||+|||||+|+.++|+++ +.++..+..++++..+.... .......+.... ...+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 45789999999999999999999975 67788888888766543221 111233444443 34599999997641
Q ss_pred CCCCCCcCcHHHH-HHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 287 RFDSEKAGDREVQ-RTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 287 r~~~~~~~~~~~~-~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
.+.... ..|..+++..- ..+..+|+|||.+
T Consensus 231 -------~s~~~~~~ll~~Il~~R~----~~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYRM----QEELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHHH----HCCCeEEEECCCC
Confidence 123333 23444555421 1345589999954
No 239
>PF13173 AAA_14: AAA domain
Probab=98.76 E-value=3.7e-08 Score=83.82 Aligned_cols=120 Identities=23% Similarity=0.292 Sum_probs=73.1
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcC--CceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTK--STFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 290 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~--~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~ 290 (431)
+.++|+||+|||||++++.++.... ..++++++.+.......... +...+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 5689999999999999999998876 77888887665432211111 212222222225679999999997
Q ss_pred CCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhh--hcCCCcceEEEcCCCCHHH
Q psy15151 291 EKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPAL--LRSGRLDRKIEFPHPNEEA 353 (431)
Q Consensus 291 ~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l--~r~gR~~~~i~~~~p~~~~ 353 (431)
++....+..+.+. ..++.+|+|+.....+.... .-.||.. .+++.|++..|
T Consensus 74 -----~~~~~~lk~l~d~------~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 74 -----PDWEDALKFLVDN------GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred -----ccHHHHHHHHHHh------ccCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 2344555555543 13445666655433332211 1235764 78888888765
No 240
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.76 E-value=1.2e-08 Score=92.00 Aligned_cols=101 Identities=22% Similarity=0.305 Sum_probs=65.4
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhHhhhcch-HHHHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQMFIGDG-AKLVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~~~~g~~-~~~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
.+.+++|+||||||||+||.+++.+ .+.++..++.++++..+-... .......+..... +.+|+|||+...-
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~-- 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEP-- 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceee--
Confidence 4578999999999999999999985 477888999998887654221 1112234444443 3599999997531
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
.+......+.++++...+ .. .+|+|||..
T Consensus 122 -------~~~~~~~~l~~ii~~R~~----~~-~tIiTSN~~ 150 (178)
T PF01695_consen 122 -------LSEWEAELLFEIIDERYE----RK-PTIITSNLS 150 (178)
T ss_dssp ---------HHHHHCTHHHHHHHHH----T--EEEEEESS-
T ss_pred -------ecccccccchhhhhHhhc----cc-CeEeeCCCc
Confidence 234556778888887542 12 477799953
No 241
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.76 E-value=1.1e-06 Score=81.72 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=115.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCC---ceEEeehhh-----hhHh----hhcchHHH--------HHHHHHHHHh-CC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKS---TFLKLAGPQ-----LVQM----FIGDGAKL--------VRDAFALAKE-KA 271 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~---~~i~i~~~~-----l~~~----~~g~~~~~--------~~~lf~~a~~-~~ 271 (431)
+-+.++|+.|+|||+++|++...++. ..+.++... +... +-+.+... -+.+.+...+ ..
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r 131 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKR 131 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999977776543 223443322 2211 11211111 1333344444 44
Q ss_pred CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC-CCCh---hhhcCCCcceEEEcC
Q psy15151 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD-ILDP---ALLRSGRLDRKIEFP 347 (431)
Q Consensus 272 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~-~l~~---~l~r~gR~~~~i~~~ 347 (431)
|.++++||++.+ .......+..+.+.-......-.++.|+-..... ..-+ ++.. |++..|+++
T Consensus 132 ~v~l~vdEah~L-----------~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir~~l~ 198 (269)
T COG3267 132 PVVLMVDEAHDL-----------NDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIRIELP 198 (269)
T ss_pred CeEEeehhHhhh-----------ChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEEEecC
Confidence 589999999998 3333344444443322222222344444322111 1111 3445 888889999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCC----CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q psy15151 348 HPNEEARARIMQIHSRKMNVSPD----VNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413 (431)
Q Consensus 348 ~p~~~~r~~Il~~~l~~~~~~~~----~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~ 413 (431)
|.+.++....++++++.-....+ -.+..+...+.| .++-|.++|..|...|...++..|+...+.
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 99999999999999987654433 235567777777 568899999999999999999988876654
No 242
>KOG2170|consensus
Probab=98.76 E-value=1.2e-07 Score=89.61 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=85.9
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC-----CceEEe-----eh--
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK-----STFLKL-----AG-- 245 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~-----~~~i~i-----~~-- 245 (431)
..+.||.-+++.+..++...+.++.. ..|..+-|+|+|||||.++++.||+.+- .+++.. ++
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p------~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNP------RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCC------CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 56889999999999988877766621 2344566899999999999999999642 222211 11
Q ss_pred hhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHh---hcCCCCCCCeEEEE
Q psy15151 246 PQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ---LDGFSSTADIKVIA 322 (431)
Q Consensus 246 ~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~---~~~~~~~~~v~vI~ 322 (431)
...++.|- ......+...+..++.++.+|||+|+| ++.....+--+|+. .++. ...+.++|+
T Consensus 156 ~~~ie~Yk---~eL~~~v~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv-~frkaIFIf 220 (344)
T KOG2170|consen 156 ASKIEDYK---EELKNRVRGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGV-DFRKAIFIF 220 (344)
T ss_pred hHHHHHHH---HHHHHHHHHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhccccccccc-cccceEEEE
Confidence 11122221 222344555666778889999999999 77777788777774 2332 234667788
Q ss_pred EeCCC
Q psy15151 323 ATNRV 327 (431)
Q Consensus 323 ttn~~ 327 (431)
-+|..
T Consensus 221 LSN~g 225 (344)
T KOG2170|consen 221 LSNAG 225 (344)
T ss_pred EcCCc
Confidence 88754
No 243
>PRK09183 transposase/IS protein; Provisional
Probab=98.75 E-value=4.8e-08 Score=93.38 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=67.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhHhhhcc-hHHHHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQMFIGD-GAKLVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~~~~g~-~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
.+.+++|+||||||||+||.+++.. .+..+..+++.++...+... ....+...+... ...+.+++|||++....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~- 178 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF- 178 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC-
Confidence 4578999999999999999999765 46677778887776544211 111233344433 24567999999987522
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
+.+....|+++++..... . .+|+|||.+
T Consensus 179 --------~~~~~~~lf~li~~r~~~---~--s~iiTsn~~ 206 (259)
T PRK09183 179 --------SQEEANLFFQVIAKRYEK---G--SMILTSNLP 206 (259)
T ss_pred --------ChHHHHHHHHHHHHHHhc---C--cEEEecCCC
Confidence 334556788888775431 2 268888864
No 244
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.74 E-value=8.3e-09 Score=102.13 Aligned_cols=225 Identities=23% Similarity=0.220 Sum_probs=118.4
Q ss_pred cccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhh-----hhHh
Q psy15151 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQ-----LVQM 251 (431)
Q Consensus 177 ~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~-----l~~~ 251 (431)
.-.|.|.+..+..+.-.+......... ........-++||.|.||||||.|.+.++.-....+ ++++.. +...
T Consensus 23 aP~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~ 100 (331)
T PF00493_consen 23 APSIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTAS 100 (331)
T ss_dssp SSTTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEE
T ss_pred CCcCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccce
Confidence 346788887776664333222111000 000012345899999999999999998876544333 222211 1000
Q ss_pred -----hhcchHHHH-HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC--------CCCC
Q psy15151 252 -----FIGDGAKLV-RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS--------STAD 317 (431)
Q Consensus 252 -----~~g~~~~~~-~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~--------~~~~ 317 (431)
..|+ -.+ .+.+-.|.. +|++|||+|.+ +.+....|.+.++.-.-.- -+.+
T Consensus 101 ~~~d~~~~~--~~leaGalvlad~---GiccIDe~dk~-----------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar 164 (331)
T PF00493_consen 101 VSRDPVTGE--WVLEAGALVLADG---GICCIDEFDKM-----------KEDDRDALHEAMEQQTISIAKAGIVTTLNAR 164 (331)
T ss_dssp ECCCGGTSS--ECEEE-HHHHCTT---SEEEECTTTT-------------CHHHHHHHHHHHCSCEEECTSSSEEEEE--
T ss_pred eccccccce--eEEeCCchhcccC---ceeeecccccc-----------cchHHHHHHHHHHcCeeccchhhhcccccch
Confidence 0011 000 112223333 59999999998 5556677888887621100 1346
Q ss_pred eEEEEEeCCCC-------------CCChhhhcCCCcceEEEc-CCCCHHHHHHHHHHHHhcCCCCC------------CC
Q psy15151 318 IKVIAATNRVD-------------ILDPALLRSGRLDRKIEF-PHPNEEARARIMQIHSRKMNVSP------------DV 371 (431)
Q Consensus 318 v~vI~ttn~~~-------------~l~~~l~r~gR~~~~i~~-~~p~~~~r~~Il~~~l~~~~~~~------------~~ 371 (431)
..|++++|+.. .+++.+++ |||.++.+ ..++.+.-..+.++.++...... ..
T Consensus 165 ~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~ 242 (331)
T PF00493_consen 165 CSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPI 242 (331)
T ss_dssp -EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT
T ss_pred hhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCcc
Confidence 67999999754 37788999 99988765 56675555555554443221110 11
Q ss_pred C-----------------------HHHHHHHc-------------CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHH
Q psy15151 372 N-----------------------YEELSRST-------------DDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDA 415 (431)
Q Consensus 372 ~-----------------------~~~la~~~-------------~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~A 415 (431)
+ .+.|.... ...+.+.++.+++-|...|..+-+..|+.+|+..|
T Consensus 243 ~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~A 322 (331)
T PF00493_consen 243 SEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEA 322 (331)
T ss_dssp -HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHH
Confidence 1 11111110 12355677899999999998899999999999999
Q ss_pred HHHHHH
Q psy15151 416 IMEVQA 421 (431)
Q Consensus 416 l~~~~~ 421 (431)
+.-+..
T Consensus 323 i~L~~~ 328 (331)
T PF00493_consen 323 IRLFEE 328 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 245
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.71 E-value=1.9e-07 Score=88.91 Aligned_cols=101 Identities=21% Similarity=0.281 Sum_probs=68.0
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhhhcchHH-HH-HHHHHHHHhCCCeEEEEcccccccc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMFIGDGAK-LV-RDAFALAKEKAPAIIFIDELDAIGT 285 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~~g~~~~-~~-~~lf~~a~~~~p~vl~iDEid~l~~ 285 (431)
.+.+++|+||||||||+||-|+++++ |..++.+..++++..+...-.. .. ..+..... ...+|+|||+...-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~~- 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYEP- 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCcc-
Confidence 45899999999999999999999864 6788999999998875432221 11 12222232 34599999998751
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 286 KRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 286 ~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
.+......+.+++..... .... |+|||.+
T Consensus 181 --------~~~~~~~~~~q~I~~r~~----~~~~-~~tsN~~ 209 (254)
T COG1484 181 --------FSQEEADLLFQLISRRYE----SRSL-IITSNLS 209 (254)
T ss_pred --------CCHHHHHHHHHHHHHHHh----hccc-eeecCCC
Confidence 234455667776665332 1222 8999964
No 246
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.68 E-value=4e-07 Score=85.33 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=79.9
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCC
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSE 291 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~ 291 (431)
..+-.++||+|||||+++|.+|..+|.+++.++|++-++ ...+..+|.-+... .+.++|||+++|
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-------- 96 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-------- 96 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS--------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh--------
Confidence 356678999999999999999999999999999987544 33455555444332 359999999999
Q ss_pred CcCcHHHHHHHHHHHHhhc----CC-----------CCCCCeEEEEEeCCC----CCCChhhhcCCCcceEEEcCCCCHH
Q psy15151 292 KAGDREVQRTMLELLNQLD----GF-----------SSTADIKVIAATNRV----DILDPALLRSGRLDRKIEFPHPNEE 352 (431)
Q Consensus 292 ~~~~~~~~~~l~~lL~~~~----~~-----------~~~~~v~vI~ttn~~----~~l~~~l~r~gR~~~~i~~~~p~~~ 352 (431)
+.++...+.+.+..+. .. .-+.++-++.|.|.. ..+++.++. -| +.+.+..||..
T Consensus 97 ---~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~ 170 (231)
T PF12774_consen 97 ---SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS 170 (231)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH
T ss_pred ---hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH
Confidence 7777777776665531 10 012345566777743 457777765 44 78999999887
Q ss_pred HHHHHHH
Q psy15151 353 ARARIMQ 359 (431)
Q Consensus 353 ~r~~Il~ 359 (431)
...+++-
T Consensus 171 ~I~ei~L 177 (231)
T PF12774_consen 171 LIAEILL 177 (231)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 247
>KOG0478|consensus
Probab=98.64 E-value=6.5e-07 Score=92.76 Aligned_cols=196 Identities=24% Similarity=0.327 Sum_probs=114.1
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEe-ehhhhhH--hhh---cchHHHHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKL-AGPQLVQ--MFI---GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i-~~~~l~~--~~~---g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
-+|||+|.||||||-+.+.+++-...-.+.- .++.-+. -|+ +++...+-+- ...--...+|.+|||||++
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLes-GALVLSD~GiCCIDEFDKM--- 538 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLES-GALVLSDNGICCIDEFDKM--- 538 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeec-CcEEEcCCceEEchhhhhh---
Confidence 4799999999999999999999755433221 1110000 000 0000000000 0000122358899999999
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhc------CC--CCCCCeEEEEEeCCCC-------------CCChhhhcCCCcceEE-
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQLD------GF--SSTADIKVIAATNRVD-------------ILDPALLRSGRLDRKI- 344 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~~------~~--~~~~~v~vI~ttn~~~-------------~l~~~l~r~gR~~~~i- 344 (431)
+...+..|.+.+++-. |+ .-+.+.-|++++|+.. .|+|.|++ |||.++
T Consensus 539 --------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIyl 608 (804)
T KOG0478|consen 539 --------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFL 608 (804)
T ss_pred --------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEE
Confidence 4455678888887621 11 1145667999999533 27899999 999854
Q ss_pred EcCCCCHHHHHH----HHHHHHhc----------------------CCCCCCCC---HHHHHH-----Hc----CC---C
Q psy15151 345 EFPHPNEEARAR----IMQIHSRK----------------------MNVSPDVN---YEELSR-----ST----DD---F 383 (431)
Q Consensus 345 ~~~~p~~~~r~~----Il~~~l~~----------------------~~~~~~~~---~~~la~-----~~----~g---~ 383 (431)
.+..||+..=+. |+..|... ..+.+.+. ...+.. +. .| .
T Consensus 609 llD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~ita 688 (804)
T KOG0478|consen 609 LLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITA 688 (804)
T ss_pred EecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccch
Confidence 456777653222 22222221 00111111 111111 00 11 2
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q psy15151 384 NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 384 s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~ 422 (431)
+.++++.+.+.+...|..+....+...|+.+|+.-.+..
T Consensus 689 t~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~a 727 (804)
T KOG0478|consen 689 TPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREA 727 (804)
T ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Confidence 568889999988888888888999999999999887754
No 248
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.63 E-value=3.2e-07 Score=97.19 Aligned_cols=227 Identities=25% Similarity=0.253 Sum_probs=130.5
Q ss_pred cccccCchHHHHHHHHHhhccccChHHHHh-cCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEe-ehhhhhHhhhc
Q psy15151 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVN-LGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL-AGPQLVQMFIG 254 (431)
Q Consensus 177 ~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~-~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i-~~~~l~~~~~g 254 (431)
.-.|.|.+..++.+.-.+-...... ... ..+..--++||.|.||||||.|.+.+++-....++.- .++. -.|
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~--~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKN--LPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAG 358 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCccc--CCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccC
Confidence 4456677776666543332211100 000 0011224799999999999999999998765443321 1111 111
Q ss_pred chHHHHHHHH--HH------HHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC--------CCCCe
Q psy15151 255 DGAKLVRDAF--AL------AKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS--------STADI 318 (431)
Q Consensus 255 ~~~~~~~~lf--~~------a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~--------~~~~v 318 (431)
.+...++.-+ +. +--..++|++|||+|.+ +......+.+.+++-.-.- -+.++
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm-----------~~~dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM-----------NEEDRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC-----------ChHHHHHHHHHHHhcEeeecccceeeecchhh
Confidence 1111111100 00 00123569999999998 5666677877777621111 12455
Q ss_pred EEEEEeCCCC-------------CCChhhhcCCCcceEEEcC-CCCHHHH----HHHHHHHHhcC---------------
Q psy15151 319 KVIAATNRVD-------------ILDPALLRSGRLDRKIEFP-HPNEEAR----ARIMQIHSRKM--------------- 365 (431)
Q Consensus 319 ~vI~ttn~~~-------------~l~~~l~r~gR~~~~i~~~-~p~~~~r----~~Il~~~l~~~--------------- 365 (431)
-|++|+|+.. .+++.|++ |||..+.+. .|+.+.= ..++..|....
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~ 505 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEE 505 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccccc
Confidence 5888888754 27788999 999876665 5555422 23444432100
Q ss_pred ---------------CCCCCCC---HHHHHH-----Hc----------CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q psy15151 366 ---------------NVSPDVN---YEELSR-----ST----------DDFNGAQCKAVCVEAGMIALRRGAAIVTHEDF 412 (431)
Q Consensus 366 ---------------~~~~~~~---~~~la~-----~~----------~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~ 412 (431)
...+.+. .+.|.. +. ...+.+++.++++-|...|..+-+..|+.+|+
T Consensus 506 ~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~ 585 (682)
T COG1241 506 RDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDV 585 (682)
T ss_pred CcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 0111111 111111 11 12478999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q psy15151 413 MDAIMEVQAK 422 (431)
Q Consensus 413 ~~Al~~~~~~ 422 (431)
.+|++-+...
T Consensus 586 ~eAi~lv~~~ 595 (682)
T COG1241 586 DEAIRLVDFS 595 (682)
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 249
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.60 E-value=1.4e-07 Score=80.08 Aligned_cols=72 Identities=22% Similarity=0.365 Sum_probs=48.0
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc--------CCceEEeehhhhhH------hh---h-----c--chHHHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT--------KSTFLKLAGPQLVQ------MF---I-----G--DGAKLVRDAFALA 267 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~--------~~~~i~i~~~~l~~------~~---~-----g--~~~~~~~~lf~~a 267 (431)
.+.++++||||+|||++++.++... ..+++.++++.... .. + + ........+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4679999999999999999999976 67788887764431 10 0 1 1223334455555
Q ss_pred HhCCCeEEEEcccccc
Q psy15151 268 KEKAPAIIFIDELDAI 283 (431)
Q Consensus 268 ~~~~p~vl~iDEid~l 283 (431)
......+|+|||+|.+
T Consensus 84 ~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHCTEEEEEEETTHHH
T ss_pred HhcCCeEEEEeChHhc
Confidence 6665569999999997
No 250
>PF05729 NACHT: NACHT domain
Probab=98.54 E-value=1.1e-06 Score=77.16 Aligned_cols=142 Identities=16% Similarity=0.216 Sum_probs=77.4
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCC---------ceEEeehhhhhHh------------hhcchHHHHHH-HHHHHHhCC
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKS---------TFLKLAGPQLVQM------------FIGDGAKLVRD-AFALAKEKA 271 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~---------~~i~i~~~~l~~~------------~~g~~~~~~~~-lf~~a~~~~ 271 (431)
-++|+|+||+|||++++.++..+.. .++.+.+...... ........... ....+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4789999999999999999985311 1223333222111 11111111222 223344566
Q ss_pred CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCH
Q psy15151 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE 351 (431)
Q Consensus 272 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~ 351 (431)
+.+|+||.+|.+...... .........+.+++.. ....++.+|.|++.. .... +.+...-...+.+++.+.
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~-~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPR-AFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCC-hHHH-HHHhcCCCcEEEECCCCH
Confidence 789999999998543210 0011122333344432 223455566666532 2211 222111125789999999
Q ss_pred HHHHHHHHHHHhc
Q psy15151 352 EARARIMQIHSRK 364 (431)
Q Consensus 352 ~~r~~Il~~~l~~ 364 (431)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988764
No 251
>KOG0480|consensus
Probab=98.54 E-value=7.2e-07 Score=91.79 Aligned_cols=230 Identities=20% Similarity=0.220 Sum_probs=130.5
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh----
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM---- 251 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~---- 251 (431)
.|-.|-|.+..+.-+.-.+--....... ....+...-+|++.|.||||||-+.+++++-+...++...-+.-...
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaa 421 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAA 421 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEE
Confidence 3555666666666554333221111000 11222333579999999999999999999876655443221110000
Q ss_pred hhc--chHHHH--HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc------CC--CCCCCeE
Q psy15151 252 FIG--DGAKLV--RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD------GF--SSTADIK 319 (431)
Q Consensus 252 ~~g--~~~~~~--~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~------~~--~~~~~v~ 319 (431)
.+. ++.... ..++-.| ..+|.+|||+|++ +..-+..+.+.+++-. |. .-+.+..
T Consensus 422 VvkD~esgdf~iEAGALmLA---DnGICCIDEFDKM-----------d~~dqvAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 422 VVKDEESGDFTIEAGALMLA---DNGICCIDEFDKM-----------DVKDQVAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred EEecCCCCceeeecCcEEEc---cCceEEechhccc-----------ChHhHHHHHHHHHhheehheecceEEeecchhh
Confidence 000 000000 0001112 2359999999998 3334566666666521 10 0123455
Q ss_pred EEEEeCCCC-------------CCChhhhcCCCcceE-EEcCCCCHHHHHHHHHHHHhcCC-CC----------------
Q psy15151 320 VIAATNRVD-------------ILDPALLRSGRLDRK-IEFPHPNEEARARIMQIHSRKMN-VS---------------- 368 (431)
Q Consensus 320 vI~ttn~~~-------------~l~~~l~r~gR~~~~-i~~~~p~~~~r~~Il~~~l~~~~-~~---------------- 368 (431)
||+++|+.. .+++++++ |||.. |-+.-|++..=..|-++.+.... ++
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrk 565 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRK 565 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHH
Confidence 888888642 27789999 99974 44567777655554444332110 00
Q ss_pred ---------CCCC---HHHHHH---------------HcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q psy15151 369 ---------PDVN---YEELSR---------------STDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 369 ---------~~~~---~~~la~---------------~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~ 421 (431)
+... -+.|.+ .+.+.+.++++.+++-+...|.-.-+..||.+|+.+|++-++.
T Consensus 566 Yi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 566 YIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKK 645 (764)
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHh
Confidence 0000 001111 1224578999999999998898888999999999999998876
Q ss_pred h
Q psy15151 422 K 422 (431)
Q Consensus 422 ~ 422 (431)
+
T Consensus 646 S 646 (764)
T KOG0480|consen 646 S 646 (764)
T ss_pred h
Confidence 4
No 252
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.54 E-value=2.6e-07 Score=92.18 Aligned_cols=103 Identities=19% Similarity=0.267 Sum_probs=65.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCC-ceEEeehhhhhHhhhcc------hHHHHHHHHHHHHhCCCeEEEEcccc
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKS-TFLKLAGPQLVQMFIGD------GAKLVRDAFALAKEKAPAIIFIDELD 281 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~-~~i~i~~~~l~~~~~g~------~~~~~~~lf~~a~~~~p~vl~iDEid 281 (431)
..+|+|++||||+|+|||+|+-.+.+.+.. .-.++.-.+++...... ....+..+.+.... ...+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 357899999999999999999999998654 33344434443322111 11112233333322 23499999998
Q ss_pred ccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 282 AIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 282 ~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
.- +.....+|..+++.+- ..++++|+|||++
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 73 4444566667777653 3678899999964
No 253
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=4.7e-07 Score=87.15 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=84.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeeh--------hhhhHhh-hc----chHHHHHHHHHHHHh----CCCe
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG--------PQLVQMF-IG----DGAKLVRDAFALAKE----KAPA 273 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~--------~~l~~~~-~g----~~~~~~~~lf~~a~~----~~p~ 273 (431)
.++.+||+||+|+||+.+|.++|..+-+.-..-.| +++..-. .| -+...++.+...+.. +...
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 45789999999999999999999975432100111 1110000 01 123345555554433 3457
Q ss_pred EEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCC
Q psy15151 274 IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 350 (431)
Q Consensus 274 vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~ 350 (431)
|++||++|.+ +.+.++.|+.+|++ .+.++++|..|+.++.+.|.+++ |+ ..+.|+++.
T Consensus 98 v~ii~~ad~m-----------t~~AaNaLLK~LEE-----Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~~ 155 (290)
T PRK05917 98 IYIIHEADRM-----------TLDAISAFLKVLED-----PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPMEE 155 (290)
T ss_pred EEEEechhhc-----------CHHHHHHHHHHhhc-----CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccchh
Confidence 9999999999 77888999999887 66788999999999999999999 87 467777653
No 254
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=4.8e-06 Score=80.42 Aligned_cols=127 Identities=16% Similarity=0.224 Sum_probs=85.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceE-------E-eehhhhhHh------hh---cc--hHHHHHHHHHHHHh--
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFL-------K-LAGPQLVQM------FI---GD--GAKLVRDAFALAKE-- 269 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i-------~-i~~~~l~~~------~~---g~--~~~~~~~lf~~a~~-- 269 (431)
.+..+||+|| +||+++|+++|..+-+.-- . -+|..+... ++ |. .-..+|.+...+..
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 4578999996 6899999999986432110 0 011111000 00 11 23456666555433
Q ss_pred --CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcC
Q psy15151 270 --KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFP 347 (431)
Q Consensus 270 --~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~ 347 (431)
+...|++||++|.+ +....+.|+..|++ ...++++|++|+.++.+-|.+++ |+ ..+.|+
T Consensus 101 ~~~~~kV~II~~ad~m-----------~~~AaNaLLKtLEE-----Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~ 161 (290)
T PRK07276 101 YEGKQQVFIIKDADKM-----------HVNAANSLLKVIEE-----PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHFP 161 (290)
T ss_pred ccCCcEEEEeehhhhc-----------CHHHHHHHHHHhcC-----CCCCeEEEEEECChhhCchHHHH--cc-eeeeCC
Confidence 34579999999999 67777888888876 55678899999999999999999 88 578887
Q ss_pred CCCHHHHHHHHH
Q psy15151 348 HPNEEARARIMQ 359 (431)
Q Consensus 348 ~p~~~~r~~Il~ 359 (431)
+ +.+...+++.
T Consensus 162 ~-~~~~~~~~L~ 172 (290)
T PRK07276 162 K-NEAYLIQLLE 172 (290)
T ss_pred C-cHHHHHHHHH
Confidence 6 5555555554
No 255
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.1e-06 Score=82.84 Aligned_cols=121 Identities=10% Similarity=0.054 Sum_probs=83.2
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehh------hhhHh------h---h--cchHHHHHHHHHHHH----
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP------QLVQM------F---I--GDGAKLVRDAFALAK---- 268 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~------~l~~~------~---~--g~~~~~~~~lf~~a~---- 268 (431)
.++..+||+||+|+||..+|.++|...-+.--.-.|. .+... + . .-....++.+.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3678899999999999999999998643211000111 11000 0 0 112334455444332
Q ss_pred -hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcC
Q psy15151 269 -EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFP 347 (431)
Q Consensus 269 -~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~ 347 (431)
.+...|++|+++|.+ +.+..+.|+.+|++ .+.++++|++|+.++.+.|.+++ |. ..+.|+
T Consensus 85 e~~~~KV~II~~ae~m-----------~~~AaNaLLK~LEE-----Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----------NKQSANSLLKLIEE-----PPKNTYGIFTTRNENNILNTILS--RC-VQYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEECChHhCchHhhh--he-eeeecC
Confidence 134679999999999 77778888888876 67889999999999999999999 87 356677
Q ss_pred CC
Q psy15151 348 HP 349 (431)
Q Consensus 348 ~p 349 (431)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 76
No 256
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.46 E-value=4.7e-07 Score=87.12 Aligned_cols=140 Identities=21% Similarity=0.351 Sum_probs=78.4
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCC-c--eEEeehhhhhHhhhcchHHHHHHHHHHH-----------HhCCCeEEE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKS-T--FLKLAGPQLVQMFIGDGAKLVRDAFALA-----------KEKAPAIIF 276 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~-~--~i~i~~~~l~~~~~g~~~~~~~~lf~~a-----------~~~~p~vl~ 276 (431)
...++||+||+|||||.+++..-..+.. . ...++++.... ...+..+.+.. ..+...|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 4478999999999999999987765443 2 23344432211 11111111100 112347999
Q ss_pred EccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC-------CCCCeEEEEEeCCCC---CCChhhhcCCCcceEEEc
Q psy15151 277 IDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS-------STADIKVIAATNRVD---ILDPALLRSGRLDRKIEF 346 (431)
Q Consensus 277 iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~-------~~~~v~vI~ttn~~~---~l~~~l~r~gR~~~~i~~ 346 (431)
|||+..-.....+ .......|-|+++...-++ .-.++.+|+|+|.+. .+++.|.| .| .++.+
T Consensus 106 iDDlN~p~~d~yg-----tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~ 177 (272)
T PF12775_consen 106 IDDLNMPQPDKYG-----TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNI 177 (272)
T ss_dssp EETTT-S---TTS-------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE-
T ss_pred ecccCCCCCCCCC-----CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEe
Confidence 9999876443322 1123345556665421111 114677889988643 36778887 66 58999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q psy15151 347 PHPNEEARARIMQIHSRK 364 (431)
Q Consensus 347 ~~p~~~~r~~Il~~~l~~ 364 (431)
+.|+.+....|+...+..
T Consensus 178 ~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ---TCCHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhh
Confidence 999999998888876653
No 257
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.44 E-value=9.9e-07 Score=85.57 Aligned_cols=101 Identities=23% Similarity=0.281 Sum_probs=65.3
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCCce-EEeehhhhhHh-------hhcchHHHHHHHHHHHHhCCCeEEEEccc
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKSTF-LKLAGPQLVQM-------FIGDGAKLVRDAFALAKEKAPAIIFIDEL 280 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~~~-i~i~~~~l~~~-------~~g~~~~~~~~lf~~a~~~~p~vl~iDEi 280 (431)
..+++|+.|||+-|+|||+|.-.+...+..+- .++.-..++.. +.|++.-.-...-+.+. ...||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~--~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAA--ETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHh--cCCEEEeeee
Confidence 34789999999999999999999998765533 34443333322 23443111111112222 2359999999
Q ss_pred cccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 281 DAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 281 d~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
+.= +.....+|..|++.+- ..+|++|+|||.
T Consensus 140 ~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~ 170 (367)
T COG1485 140 EVT-----------DIADAMILGRLLEALF----ARGVVLVATSNT 170 (367)
T ss_pred eec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCC
Confidence 872 4455567778888764 358889999996
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.44 E-value=1.1e-06 Score=76.87 Aligned_cols=111 Identities=23% Similarity=0.307 Sum_probs=63.9
Q ss_pred ceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhhh----------------------cc--hHHHHHHHHHHH
Q psy15151 215 VLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMFI----------------------GD--GAKLVRDAFALA 267 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~~----------------------g~--~~~~~~~lf~~a 267 (431)
++|+||||+|||+++..++... +.+++.+++........ .. ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998875 45666665543222110 00 111112234556
Q ss_pred HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 268 KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 268 ~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
....|.+|+|||+..+...........+......+..+++... ..++.+|++++....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCCc
Confidence 6678899999999987543210001112233444555554432 246667777765543
No 259
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.40 E-value=1.6e-06 Score=81.89 Aligned_cols=190 Identities=24% Similarity=0.328 Sum_probs=103.8
Q ss_pred CCCCceeeCCCCCchHHHHHHHHH------HcCCceEEeehhhh-----hHhhhcchHHHHHHHHHHH--------HhCC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAA------QTKSTFLKLAGPQL-----VQMFIGDGAKLVRDAFALA--------KEKA 271 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~------~~~~~~i~i~~~~l-----~~~~~g~~~~~~~~lf~~a--------~~~~ 271 (431)
...++||.||+|.||+.||+.+.. ++..+|+.++|..+ ++-++|+. +..|..+ +...
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghv----kgaftga~~~r~gllrsad 282 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHV----KGAFTGARESREGLLRSAD 282 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhh----ccccccchhhhhhhhccCC
Confidence 456799999999999999999876 57789999999765 33344332 2222111 2223
Q ss_pred CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC--CC----CCCeEEEEEeCC-------CCCCChhhhcCC
Q psy15151 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF--SS----TADIKVIAATNR-------VDILDPALLRSG 338 (431)
Q Consensus 272 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~--~~----~~~v~vI~ttn~-------~~~l~~~l~r~g 338 (431)
...+|+|||..|+. +-|..|+..+++-.-+ .+ ...+-+|+-|.+ ...+...+.-
T Consensus 283 ggmlfldeigelga-----------deqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~a-- 349 (531)
T COG4650 283 GGMLFLDEIGELGA-----------DEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA-- 349 (531)
T ss_pred CceEehHhhhhcCc-----------cHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHH--
Confidence 46999999999843 3456677777663211 11 234445555532 1122233333
Q ss_pred CcceEEEcCCCCHHHHHHHH--------HHHHhcCCCCCCCC----HHHHHHH-----cCCCCHHHHHHHHHHHHHHHHH
Q psy15151 339 RLDRKIEFPHPNEEARARIM--------QIHSRKMNVSPDVN----YEELSRS-----TDDFNGAQCKAVCVEAGMIALR 401 (431)
Q Consensus 339 R~~~~i~~~~p~~~~r~~Il--------~~~l~~~~~~~~~~----~~~la~~-----~~g~s~~di~~l~~~A~~~A~~ 401 (431)
|+. ...|..|...+|.+=+ ..+.+..+-.-..+ -..++-. ...-+-+++.+-+.+.+..|
T Consensus 350 rin-lwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatla-- 426 (531)
T COG4650 350 RIN-LWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLA-- 426 (531)
T ss_pred hhh-eeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHh--
Confidence 442 4566667666655422 12222111110011 1111111 11124466666666665555
Q ss_pred hCCCCcCHHHHHHHHHHHHH
Q psy15151 402 RGAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 402 ~~~~~It~ed~~~Al~~~~~ 421 (431)
....||.+-+.+-+..++.
T Consensus 427 -d~grit~~~ve~ei~rlr~ 445 (531)
T COG4650 427 -DSGRITLDVVEDEINRLRY 445 (531)
T ss_pred -cCCceeHHHHHHHHHHHHH
Confidence 5566888777777766654
No 260
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=9e-06 Score=79.10 Aligned_cols=125 Identities=9% Similarity=0.093 Sum_probs=89.2
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCC-----------c--eEEeehhhhhHhhhcchHHHHHHHHHHHHh-----CCCe
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKS-----------T--FLKLAGPQLVQMFIGDGAKLVRDAFALAKE-----KAPA 273 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~-----------~--~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~-----~~p~ 273 (431)
++.+||+|+.|.||+.+|+.++..+-+ | ++.++... . .-+...++.+.+.+.. +.+.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~--~i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---K--DLSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---C--cCCHHHHHHHHHHhccCCcccCCce
Confidence 467889999999999999999997622 1 22222000 0 0122345555544422 3567
Q ss_pred EEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHH
Q psy15151 274 IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 353 (431)
Q Consensus 274 vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~ 353 (431)
|++||++|.+ +...++.|+..|++ .+.++++|++|+.++.+-|.+++ |+ ..+.|++|+.++
T Consensus 93 vvII~~~e~m-----------~~~a~NaLLK~LEE-----Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~ 153 (299)
T PRK07132 93 ILIIKNIEKT-----------SNSLLNALLKTIEE-----PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQK 153 (299)
T ss_pred EEEEeccccc-----------CHHHHHHHHHHhhC-----CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHH
Confidence 9999999998 55667778777776 56778888888888999999998 77 579999999988
Q ss_pred HHHHHHH
Q psy15151 354 RARIMQI 360 (431)
Q Consensus 354 r~~Il~~ 360 (431)
..+.+..
T Consensus 154 l~~~l~~ 160 (299)
T PRK07132 154 ILAKLLS 160 (299)
T ss_pred HHHHHHH
Confidence 8877654
No 261
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.39 E-value=6.2e-06 Score=94.73 Aligned_cols=178 Identities=19% Similarity=0.315 Sum_probs=102.0
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce---EEeehh---
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF---LKLAGP--- 246 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~---i~i~~~--- 246 (431)
+...+++++|.+..++++...+... ....+.+-|+||+|+||||||+++++.....| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~-----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLE-----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccc-----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccc
Confidence 4567889999999999998766432 12446789999999999999999988754332 111110
Q ss_pred ---hh-------------------hHhhhcch---HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHH
Q psy15151 247 ---QL-------------------VQMFIGDG---AKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRT 301 (431)
Q Consensus 247 ---~l-------------------~~~~~g~~---~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~ 301 (431)
.. .....+.. ...+. .....-...+.+|+||+++.. + .
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~-~~~~~L~~krvLLVLDdv~~~-------------~---~ 310 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLG-AMEERLKHRKVLIFIDDLDDQ-------------D---V 310 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHH-HHHHHHhCCeEEEEEeCCCCH-------------H---H
Confidence 00 00000000 00001 111222355779999998753 1 1
Q ss_pred HHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCH----HHHH
Q psy15151 302 MLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNY----EELS 377 (431)
Q Consensus 302 l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~----~~la 377 (431)
+ +.+....... ..+..||+||... .+.+....+.++.++.|+.++..+++..++-+.... ..++ ..++
T Consensus 311 l-~~L~~~~~~~-~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv 382 (1153)
T PLN03210 311 L-DALAGQTQWF-GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVA 382 (1153)
T ss_pred H-HHHHhhCccC-CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHH
Confidence 2 2222211111 2334567777643 333333567889999999999999998876543222 2222 3456
Q ss_pred HHcCCCCHH
Q psy15151 378 RSTDDFNGA 386 (431)
Q Consensus 378 ~~~~g~s~~ 386 (431)
..+.|..-+
T Consensus 383 ~~c~GLPLA 391 (1153)
T PLN03210 383 LRAGNLPLG 391 (1153)
T ss_pred HHhCCCcHH
Confidence 677777643
No 262
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.36 E-value=2.8e-06 Score=94.83 Aligned_cols=135 Identities=19% Similarity=0.277 Sum_probs=99.2
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhh------hhHhhhcchHHHH----HHHHHHHHhCCCeEEEEcccc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQ------LVQMFIGDGAKLV----RDAFALAKEKAPAIIFIDELD 281 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~------l~~~~~g~~~~~~----~~lf~~a~~~~p~vl~iDEid 281 (431)
..++||.||+.+|||++...+|...+..|++++-.+ ++..|+....+.+ +-+.+..|++ ..|++||+.
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--yWIVLDELN 965 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--YWIVLDELN 965 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--cEEEeeccc
Confidence 357999999999999999999999999999998754 3333432222211 3345555555 389999998
Q ss_pred ccccCCCCCCCcCcHHHHHHHHHHHHhhcC---------CCCCCCeEEEEEeCCCCC------CChhhhcCCCcceEEEc
Q psy15151 282 AIGTKRFDSEKAGDREVQRTMLELLNQLDG---------FSSTADIKVIAATNRVDI------LDPALLRSGRLDRKIEF 346 (431)
Q Consensus 282 ~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~---------~~~~~~v~vI~ttn~~~~------l~~~l~r~gR~~~~i~~ 346 (431)
.. ..++...|.++|+.-.. .....++.+++|-|+|.. +..||++ || ..++|
T Consensus 966 LA-----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hF 1031 (4600)
T COG5271 966 LA-----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHF 1031 (4600)
T ss_pred cC-----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhhc
Confidence 74 67888999999986321 123457778888887643 7789999 99 57888
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15151 347 PHPNEEARARIMQIHS 362 (431)
Q Consensus 347 ~~p~~~~r~~Il~~~l 362 (431)
..-..++...|+...+
T Consensus 1032 ddipedEle~ILh~rc 1047 (4600)
T COG5271 1032 DDIPEDELEEILHGRC 1047 (4600)
T ss_pred ccCcHHHHHHHHhccC
Confidence 8888888888887554
No 263
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.35 E-value=1.1e-06 Score=79.07 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=37.7
Q ss_pred ccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc---eEEeehhhh
Q psy15151 180 IGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST---FLKLAGPQL 248 (431)
Q Consensus 180 i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~---~i~i~~~~l 248 (431)
++|.+++++++...+. .... ..+..++|+|++|+|||++++++....... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~---------~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQS---------GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS--------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHHc---------CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6899999999999885 2222 245889999999999999999988754332 666655443
No 264
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.33 E-value=2.5e-05 Score=75.46 Aligned_cols=168 Identities=19% Similarity=0.240 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHH--cCCce---EEeehhh------hhHh-
Q psy15151 184 DKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ--TKSTF---LKLAGPQ------LVQM- 251 (431)
Q Consensus 184 ~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~--~~~~~---i~i~~~~------l~~~- 251 (431)
+..+++|.+.+.... ...+.+.|+|++|+|||+||+.+++. ....| +.++.+. +...
T Consensus 2 e~~~~~l~~~L~~~~-----------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS-----------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTTT-----------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-----------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 456677776665321 24577999999999999999999987 33332 2233221 1111
Q ss_pred --hhcc----------hHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15151 252 --FIGD----------GAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIK 319 (431)
Q Consensus 252 --~~g~----------~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~ 319 (431)
.++. .......+.+.. ...+++|+||+++.. ..+..+...+.. ...+..
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~--~~~~~k 131 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDE----------------EDLEELREPLPS--FSSGSK 131 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SH----------------HHH-------HC--HHSS-E
T ss_pred cccccccccccccccccccccccchhhh-ccccceeeeeeeccc----------------cccccccccccc--cccccc
Confidence 1111 122233344443 344899999999874 122222211111 123456
Q ss_pred EEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCC---C-CCCCHHHHHHHcCCCCH
Q psy15151 320 VIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNV---S-PDVNYEELSRSTDDFNG 385 (431)
Q Consensus 320 vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~---~-~~~~~~~la~~~~g~s~ 385 (431)
||.||...... .... .....+.++.++.++-.+++......... . .+.....|+..+.|...
T Consensus 132 ilvTTR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 197 (287)
T PF00931_consen 132 ILVTTRDRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPL 197 (287)
T ss_dssp EEEEESCGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HH
T ss_pred ccccccccccc-cccc---ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 77787653221 1111 11578999999999999999988754331 1 12224678888877653
No 265
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.31 E-value=1.7e-06 Score=71.13 Aligned_cols=23 Identities=43% Similarity=0.839 Sum_probs=20.4
Q ss_pred ceeeCCCCCchHHHHHHHHHHcC
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~ 237 (431)
|.|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998644
No 266
>KOG2228|consensus
Probab=98.31 E-value=6.4e-06 Score=79.31 Aligned_cols=164 Identities=20% Similarity=0.284 Sum_probs=104.6
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHH---HcCCceEEeehhhhhH--
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAA---QTKSTFLKLAGPQLVQ-- 250 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~---~~~~~~i~i~~~~l~~-- 250 (431)
.+-.+.|..+.-+.+.+.+...+.+. -..++++.||.|+|||++....-. +.+..|+.+.....+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~g---------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~d 92 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHG---------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTD 92 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhc---------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhh
Confidence 45567788888888877777654443 558999999999999988765533 4566665543321111
Q ss_pred -------------------hhhcchHHHHHHHHHHHHhC-----CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHH
Q psy15151 251 -------------------MFIGDGAKLVRDAFALAKEK-----APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELL 306 (431)
Q Consensus 251 -------------------~~~g~~~~~~~~lf~~a~~~-----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL 306 (431)
+.+|.....+..+++....+ .+.|.++||||..++. .-|..+..++
T Consensus 93 k~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlf 162 (408)
T KOG2228|consen 93 KIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHH
Confidence 11233333444444444332 2456668899998543 3456667777
Q ss_pred HhhcCCCCCCCeEEEEEeCCCCC---CChhhhcCCCcceE-EEcC-CCCHHHHHHHHHHHH
Q psy15151 307 NQLDGFSSTADIKVIAATNRVDI---LDPALLRSGRLDRK-IEFP-HPNEEARARIMQIHS 362 (431)
Q Consensus 307 ~~~~~~~~~~~v~vI~ttn~~~~---l~~~l~r~gR~~~~-i~~~-~p~~~~r~~Il~~~l 362 (431)
+.... ...++.||+.|.+-+. +.....+ ||... |.++ +.+..+...+++..+
T Consensus 163 Disqs--~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQS--ARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhh--cCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 76442 4678889999887665 4457777 99875 5554 446788888888766
No 267
>KOG1970|consensus
Probab=98.26 E-value=3.2e-05 Score=78.90 Aligned_cols=205 Identities=14% Similarity=0.183 Sum_probs=108.0
Q ss_pred CCCcccccCchHHHHHHHHHhhcc-ccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehh------
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLP-MTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP------ 246 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~-~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~------ 246 (431)
+...+++.--.+-+.++..++... ...+.+ ..+-+||+||+|||||+.++.++.++|..++.-.-+
T Consensus 78 P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l-------~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~ 150 (634)
T KOG1970|consen 78 PRTLEELAVHKKKISEVKQWLKQVAEFTPKL-------GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEP 150 (634)
T ss_pred cccHHHHhhhHHhHHHHHHHHHHHHHhccCC-------CceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccc
Confidence 455666666667777777776611 111111 335688999999999999999999988776653311
Q ss_pred -hh------hHhhhcchHHHHHHHHHHHH------------hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHH
Q psy15151 247 -QL------VQMFIGDGAKLVRDAFALAK------------EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 307 (431)
Q Consensus 247 -~l------~~~~~g~~~~~~~~lf~~a~------------~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~ 307 (431)
.+ ....++..-.........+. ...+.+|++||+-..+... +.+.++.+++++.
T Consensus 151 ~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d-------~~~~f~evL~~y~ 223 (634)
T KOG1970|consen 151 ENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD-------DSETFREVLRLYV 223 (634)
T ss_pred ccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh-------hHHHHHHHHHHHH
Confidence 00 00000000001111111221 1336699999997765431 2333333333333
Q ss_pred hhcCCCCCCCeEEEEEeC--CCCCCCh------hhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC---C-CHHH
Q psy15151 308 QLDGFSSTADIKVIAATN--RVDILDP------ALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD---V-NYEE 375 (431)
Q Consensus 308 ~~~~~~~~~~v~vI~ttn--~~~~l~~------~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~---~-~~~~ 375 (431)
.. ...++ ||+.|+ .++..++ .+.-..|+ ..|.|.|-...-.++.+...++....... + +...
T Consensus 224 s~----g~~Pl-If~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~ 297 (634)
T KOG1970|consen 224 SI----GRCPL-IFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAE 297 (634)
T ss_pred hc----CCCcE-EEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHH
Confidence 21 12233 333333 2222222 12112255 37899999988888888777664333211 1 1223
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 376 LSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 376 la~~~~g~s~~di~~l~~~A~~~A 399 (431)
+-..+. -+++||+.+++..-+.+
T Consensus 298 v~~i~~-~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 298 VELICQ-GSGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHHH-hcCccHHHHHhHhhhhc
Confidence 333333 35578998888777765
No 268
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.24 E-value=3e-06 Score=78.23 Aligned_cols=78 Identities=18% Similarity=0.361 Sum_probs=52.1
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhh-hHhhh---c-------------------chHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQL-VQMFI---G-------------------DGAKLVR 261 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l-~~~~~---g-------------------~~~~~~~ 261 (431)
|++.+.-++++||||+|||+++..++.. .+...+++++.++ ...+. . +....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 6778888999999999999999998864 3556777777541 11000 0 0011133
Q ss_pred HHHHHHHhCCCeEEEEcccccccc
Q psy15151 262 DAFALAKEKAPAIIFIDELDAIGT 285 (431)
Q Consensus 262 ~lf~~a~~~~p~vl~iDEid~l~~ 285 (431)
.+...+....+.+|+||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 344445556789999999998753
No 269
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.21 E-value=2.2e-05 Score=78.75 Aligned_cols=191 Identities=16% Similarity=0.175 Sum_probs=96.4
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH----cCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ----TKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~----~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
...++++.||+|||||+++.+++.. .| -.++.+.++..... ..+.. -..+.+|+|||+..+--.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~-------~~lg~--v~~~DlLI~DEvgylp~~ 275 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST-------RQIGL--VGRWDVVAFDEVATLKFA 275 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------HHHhh--hccCCEEEEEcCCCCcCC
Confidence 4578999999999999999998776 23 33344444433211 11111 234569999999986332
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhc---CCCC-CCCeEEEEEeCCCCC-------------C-----ChhhhcCCCcce--
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQLD---GFSS-TADIKVIAATNRVDI-------------L-----DPALLRSGRLDR-- 342 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~~---~~~~-~~~v~vI~ttn~~~~-------------l-----~~~l~r~gR~~~-- 342 (431)
+ ..+...+|...+.... +... ..+.-+++..|-... + |.||+. ||..
T Consensus 276 ~-------~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~DsAflD--RiH~yi 346 (449)
T TIGR02688 276 K-------PKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMRDSAFLD--RIHGYL 346 (449)
T ss_pred c-------hHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCCcchhhcCcccccccCChhhhhhHHHH--hhhccC
Confidence 2 4445555655554321 1000 122334443343211 2 334554 5431
Q ss_pred -EEEcCCCCHHH-------HHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH-HHhCCCCcCHHHH
Q psy15151 343 -KIEFPHPNEEA-------RARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIA-LRRGAAIVTHEDF 412 (431)
Q Consensus 343 -~i~~~~p~~~~-------r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A-~~~~~~~It~ed~ 412 (431)
-.++|....+- ..+.+...++.+.-. -.-.++.......+++.+|..++-+...... +.--...++.++|
T Consensus 347 PGWeipk~~~e~~t~~yGl~~DylsE~l~~lR~~~~~~~~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee~ 426 (449)
T TIGR02688 347 PGWEIPKIRKEMFSNGYGFVVDYFAEALRELREREYADIVDRHFSLSPNLNTRDVIAVKKTFSGLMKILFPHGTITKEEF 426 (449)
T ss_pred CCCcCccCCHHHcccCCcchHHHHHHHHHHHHhhHHHHhhhhheecCCCcchhhHHHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 22333333322 122233233322211 0001223333446678899888766443322 2233466999999
Q ss_pred HHHHHHHHHh
Q psy15151 413 MDAIMEVQAK 422 (431)
Q Consensus 413 ~~Al~~~~~~ 422 (431)
.+.++-....
T Consensus 427 ~~~l~~Ale~ 436 (449)
T TIGR02688 427 TECLEPALEG 436 (449)
T ss_pred HHHHHHHHHH
Confidence 9888765543
No 270
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.19 E-value=7.1e-06 Score=91.73 Aligned_cols=136 Identities=20% Similarity=0.283 Sum_probs=95.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH--hhhcch-----HHH--H--HHHHHHHHhCCCeEEEEcc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ--MFIGDG-----AKL--V--RDAFALAKEKAPAIIFIDE 279 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~--~~~g~~-----~~~--~--~~lf~~a~~~~p~vl~iDE 279 (431)
..+++||-|.||+|||+|..++|+..|..+++++.++-.. .++|.. .+. . ...+..++.+ ..|++||
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G--~WVlLDE 1619 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG--GWVLLDE 1619 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC--CEEEeeh
Confidence 5578999999999999999999999999999999875321 122221 111 1 1234445554 4899999
Q ss_pred ccccccCCCCCCCcCcHHHHHHHHHHHHhhc---------CCCCCCCeEEEEEeCCC------CCCChhhhcCCCcceEE
Q psy15151 280 LDAIGTKRFDSEKAGDREVQRTMLELLNQLD---------GFSSTADIKVIAATNRV------DILDPALLRSGRLDRKI 344 (431)
Q Consensus 280 id~l~~~r~~~~~~~~~~~~~~l~~lL~~~~---------~~~~~~~v~vI~ttn~~------~~l~~~l~r~gR~~~~i 344 (431)
+... +..+..-|...|+... .+....++.|++|-|+. ..++..|++ ||. +|
T Consensus 1620 iNLa-----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV 1685 (4600)
T COG5271 1620 INLA-----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VV 1685 (4600)
T ss_pred hhhh-----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eE
Confidence 9875 5556666777776521 22345678888888864 348899999 995 67
Q ss_pred EcCCCCHHHHHHHHHHHH
Q psy15151 345 EFPHPNEEARARIMQIHS 362 (431)
Q Consensus 345 ~~~~p~~~~r~~Il~~~l 362 (431)
.+..++.++...|.....
T Consensus 1686 ~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred EecccccchHHHHHHhhC
Confidence 788888877777766544
No 271
>KOG0477|consensus
Probab=98.16 E-value=9.4e-06 Score=83.45 Aligned_cols=191 Identities=23% Similarity=0.280 Sum_probs=105.2
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHH-----H------HHHHHHHhCCCeEEEEcccc
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLV-----R------DAFALAKEKAPAIIFIDELD 281 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~-----~------~lf~~a~~~~p~vl~iDEid 281 (431)
-++||+|.||||||-+.|.+++-....++.-.-.. .-+|-+.... + +.+-.|. .+|.+|||+|
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGA---SavGLTa~v~KdPvtrEWTLEaGALVLAD---kGvClIDEFD 556 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGA---SAVGLTAYVRKDPVTREWTLEAGALVLAD---KGVCLIDEFD 556 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEeccCCc---cccceeEEEeeCCccceeeeccCeEEEcc---CceEEeehhh
Confidence 36999999999999999999997665554321100 0001100000 0 0111122 3599999999
Q ss_pred ccccCCCCCCCcCcHHHHHHHHHHHHhhc------CC--CCCCCeEEEEEeCCCC-------------CCChhhhcCCCc
Q psy15151 282 AIGTKRFDSEKAGDREVQRTMLELLNQLD------GF--SSTADIKVIAATNRVD-------------ILDPALLRSGRL 340 (431)
Q Consensus 282 ~l~~~r~~~~~~~~~~~~~~l~~lL~~~~------~~--~~~~~v~vI~ttn~~~-------------~l~~~l~r~gR~ 340 (431)
++-... ...+-+.+++-. |+ .-..++.||+|+|+.. .+...+++ ||
T Consensus 557 KMndqD-----------RtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlS--RF 623 (854)
T KOG0477|consen 557 KMNDQD-----------RTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--RF 623 (854)
T ss_pred hhcccc-----------cchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhh--hc
Confidence 984321 111222222200 00 0124566899999721 24456777 99
Q ss_pred ceEEEcC---CCCHHHH--HHHHHHHHhcCCCC--------------------------------------CCCCHHHHH
Q psy15151 341 DRKIEFP---HPNEEAR--ARIMQIHSRKMNVS--------------------------------------PDVNYEELS 377 (431)
Q Consensus 341 ~~~i~~~---~p~~~~r--~~Il~~~l~~~~~~--------------------------------------~~~~~~~la 377 (431)
|....+. .|-.+++ ..++..|.+..+-. ...|.+.++
T Consensus 624 DiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s 703 (854)
T KOG0477|consen 624 DILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKIS 703 (854)
T ss_pred ceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHH
Confidence 9766664 2222332 33444444321111 112222332
Q ss_pred HH---------cCC---CCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q psy15151 378 RS---------TDD---FNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 378 ~~---------~~g---~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~ 422 (431)
.. ..| .+.+-|..+++-+...|...-+..|+.+|+..|+.-+..+
T Consensus 704 ~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldS 760 (854)
T KOG0477|consen 704 SVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDS 760 (854)
T ss_pred HHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHH
Confidence 21 112 1557788888888888877788889999999999877654
No 272
>KOG0482|consensus
Probab=98.15 E-value=7.2e-06 Score=82.48 Aligned_cols=224 Identities=21% Similarity=0.245 Sum_probs=124.6
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhcCC--CCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcc
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGI--QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGD 255 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~--~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~ 255 (431)
-.|.|.++.++.|.-.+.-..... ..-|+ ...-+|+|.|.||+.||-|.+++.+-.....+.-.- -++.+|-
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~---~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGr---GSSGVGL 415 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKS---PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGR---GSSGVGL 415 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCC---CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCC---CCCcccc
Confidence 346677777776654443221111 01122 222368999999999999999998865444332211 0112222
Q ss_pred hHHHHHH-----------HHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhh------cCC--CCCC
Q psy15151 256 GAKLVRD-----------AFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL------DGF--SSTA 316 (431)
Q Consensus 256 ~~~~~~~-----------lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~------~~~--~~~~ 316 (431)
+....+. .+-.|. .+|.+|||+|++... ....+.+++++- .|+ .-+.
T Consensus 416 TAAVmkDpvTgEM~LEGGALVLAD---~GICCIDEfDKM~e~-----------DRtAIHEVMEQQTISIaKAGI~TtLNA 481 (721)
T KOG0482|consen 416 TAAVMKDPVTGEMVLEGGALVLAD---GGICCIDEFDKMDES-----------DRTAIHEVMEQQTISIAKAGINTTLNA 481 (721)
T ss_pred chhhhcCCCCCeeEeccceEEEcc---CceEeehhhhhhhhh-----------hhHHHHHHHHhhhhhhhhhccccchhh
Confidence 2222111 111122 358999999998432 123344444431 111 1235
Q ss_pred CeEEEEEeCCCC-------------CCChhhhcCCCcceEEEc-CCCCHHHHHHHHHH----HHhcCCCC---CCCCH--
Q psy15151 317 DIKVIAATNRVD-------------ILDPALLRSGRLDRKIEF-PHPNEEARARIMQI----HSRKMNVS---PDVNY-- 373 (431)
Q Consensus 317 ~v~vI~ttn~~~-------------~l~~~l~r~gR~~~~i~~-~~p~~~~r~~Il~~----~l~~~~~~---~~~~~-- 373 (431)
++.|++++|+.. .|+.+|++ |||..+-+ ..|+.+.-..+.++ |..+..-. ..++.
T Consensus 482 R~sILaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~ 559 (721)
T KOG0482|consen 482 RTSILAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNL 559 (721)
T ss_pred hHHhhhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHH
Confidence 666888888632 37889999 99974444 46665443333332 22111111 01111
Q ss_pred ----------------HHHHHH--------------c---CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q psy15151 374 ----------------EELSRS--------------T---DDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 374 ----------------~~la~~--------------~---~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~ 420 (431)
..++.. . ..-+++-+-.+++.+...|..+-...|..+|+.+|++.+.
T Consensus 560 mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 560 MRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 111110 0 1226788889999988889888889999999999999887
Q ss_pred Hhh
Q psy15151 421 AKK 423 (431)
Q Consensus 421 ~~~ 423 (431)
-++
T Consensus 640 ~sK 642 (721)
T KOG0482|consen 640 MSK 642 (721)
T ss_pred hhh
Confidence 554
No 273
>KOG1968|consensus
Probab=98.12 E-value=8.5e-06 Score=89.06 Aligned_cols=163 Identities=18% Similarity=0.302 Sum_probs=104.8
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh-----hcc--hHHHHHHHH-----HHHHhCCCeEEEEccccc
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF-----IGD--GAKLVRDAF-----ALAKEKAPAIIFIDELDA 282 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~-----~g~--~~~~~~~lf-----~~a~~~~p~vl~iDEid~ 282 (431)
++++||||+|||+.+..+|.+++..++.+|.+..-++. +|. ....+...| .........||+|||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 68999999999999999999999999999987553332 111 112222222 001112234999999999
Q ss_pred cccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHH
Q psy15151 283 IGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHS 362 (431)
Q Consensus 283 l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l 362 (431)
+... ++.....+.++.. .....+|+++|........-+. |-...+.|+.|+...+..-+...+
T Consensus 440 ~~~~--------dRg~v~~l~~l~~-------ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~ 502 (871)
T KOG1968|consen 440 MFGE--------DRGGVSKLSSLCK-------KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSIC 502 (871)
T ss_pred ccch--------hhhhHHHHHHHHH-------hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhh
Confidence 8541 3333344444443 2344588899877766654444 555679999999999888777665
Q ss_pred hcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy15151 363 RKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMI 398 (431)
Q Consensus 363 ~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~ 398 (431)
..-.+. .+-.++.+.. ++++||++++..-.++
T Consensus 503 ~se~~ki~~~~l~~~s~----~~~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 503 KSEGIKISDDVLEEISK----LSGGDIRQIIMQLQFW 535 (871)
T ss_pred cccceecCcHHHHHHHH----hcccCHHHHHHHHhhh
Confidence 543322 2233666666 4478888777665555
No 274
>PF14516 AAA_35: AAA-like domain
Probab=98.12 E-value=0.0004 Score=68.91 Aligned_cols=172 Identities=18% Similarity=0.178 Sum_probs=96.0
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHh-------h-----------hcc-------------h
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQM-------F-----------IGD-------------G 256 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~-------~-----------~g~-------------~ 256 (431)
++..+.+.||..+|||++...+.+.+ +...+.+++..+.+. + ++- +
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 56788999999999999999887653 556666666433110 0 000 1
Q ss_pred HHHHHHHHHHH---HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC----CCCCeEEEEEeCCCCC
Q psy15151 257 AKLVRDAFALA---KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS----STADIKVIAATNRVDI 329 (431)
Q Consensus 257 ~~~~~~lf~~a---~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~----~~~~v~vI~ttn~~~~ 329 (431)
.......|+.. ....|-||+|||||.+.... .+..-++.+|....... ...++.+|++......
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~---------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP---------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY 180 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc---------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc
Confidence 11122233321 22468899999999996431 22233444444322111 1233444444332222
Q ss_pred CChhh-hcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Q psy15151 330 LDPAL-LRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEA 395 (431)
Q Consensus 330 l~~~l-~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A 395 (431)
+.... .+|-.+...|.++..+.++...+++.+-.. ..... ++.|...+.|.. .=+..+|...
T Consensus 181 ~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~-~~~l~~~tgGhP-~Lv~~~~~~l 243 (331)
T PF14516_consen 181 IILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQ-LEQLMDWTGGHP-YLVQKACYLL 243 (331)
T ss_pred cccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHH-HHHHHHHHCCCH-HHHHHHHHHH
Confidence 22211 233345568889999999999988876432 22222 778888887754 4344444433
No 275
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.09 E-value=1.6e-05 Score=81.82 Aligned_cols=79 Identities=25% Similarity=0.423 Sum_probs=56.8
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhh------hcc--------hHHHHHHHHHHHHhC
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMF------IGD--------GAKLVRDAFALAKEK 270 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~------~g~--------~~~~~~~lf~~a~~~ 270 (431)
|+.++..++|+||||+|||+|+..++... +..+++++..+-.... +|. .+..+..+++.+...
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 67788889999999999999999998754 5677777765433221 111 112245566777777
Q ss_pred CCeEEEEccccccccC
Q psy15151 271 APAIIFIDELDAIGTK 286 (431)
Q Consensus 271 ~p~vl~iDEid~l~~~ 286 (431)
.|.+|+||.+..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999988654
No 276
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.08 E-value=4.1e-05 Score=71.91 Aligned_cols=110 Identities=15% Similarity=0.255 Sum_probs=62.7
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhH----hh--hcc-----------------------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQ----MF--IGD----------------------- 255 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~----~~--~g~----------------------- 255 (431)
|++++..+++.||||||||+++..++.. .+...++++..+-.. .. +|.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 4667788999999999999997655442 245555555432111 10 000
Q ss_pred --hHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 256 --GAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 256 --~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
....+..+...+....|.++++||+-.+.... .++...+.+.+++..+.. . +..+++|++..
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~------~d~~~~~~l~~~l~~l~~---~-g~tvi~t~~~~ 163 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISND------ASEVAVNDLMAFFKRISS---L-NKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCC------cchHHHHHHHHHHHHHHh---C-CCEEEEEeccc
Confidence 12223344555555578899999998864221 123333556666665432 2 33566677644
No 277
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.07 E-value=9.5e-06 Score=75.29 Aligned_cols=98 Identities=22% Similarity=0.274 Sum_probs=52.0
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh-Hh-----h----hcchHHHHHHHHHHHH--hCCCeEEEEcc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV-QM-----F----IGDGAKLVRDAFALAK--EKAPAIIFIDE 279 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~-~~-----~----~g~~~~~~~~lf~~a~--~~~p~vl~iDE 279 (431)
+..+||||+||+|||++|+.++.. ..++..+++.-. .. . ...+-..+.+.+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 466999999999999999999731 223333332100 00 0 0011112222223222 24578999999
Q ss_pred cccccc------CCCC-C---CCcCcHHHHHHHHHHHHhhcC
Q psy15151 280 LDAIGT------KRFD-S---EKAGDREVQRTMLELLNQLDG 311 (431)
Q Consensus 280 id~l~~------~r~~-~---~~~~~~~~~~~l~~lL~~~~~ 311 (431)
|+.+.. .+.. + ...+-..+...++.+|+.+..
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~ 131 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE 131 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 998754 1211 1 112233445566666666643
No 278
>KOG2543|consensus
Probab=98.06 E-value=6.2e-05 Score=73.77 Aligned_cols=162 Identities=20% Similarity=0.245 Sum_probs=96.1
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh----
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM---- 251 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~---- 251 (431)
.-..+.+.+.++..+...+.. ..+ ..|..+.|||.+|||||.+++.+.+.++.+.+.++|-+.+.-
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~-~~~---------~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~ll 73 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGN-NSC---------TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILL 73 (438)
T ss_pred cccCccchHHHHHHHHHHhCC-CCc---------ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHH
Confidence 345678899999998876542 111 145678999999999999999999999999999988654321
Q ss_pred ------h-----hcchH----HHH---HHHHHH---HHh-CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhh
Q psy15151 252 ------F-----IGDGA----KLV---RDAFAL---AKE-KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL 309 (431)
Q Consensus 252 ------~-----~g~~~----~~~---~~lf~~---a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~ 309 (431)
. .|... ..+ -.+|.+ +.+ ...-.|++|.+|.+-. .+......+.++-..+
T Consensus 74 e~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD--------~~a~ll~~l~~L~el~ 145 (438)
T KOG2543|consen 74 EKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD--------MDAILLQCLFRLYELL 145 (438)
T ss_pred HHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc--------cchHHHHHHHHHHHHh
Confidence 1 11111 111 112222 111 2345789999999832 1333333343333322
Q ss_pred cCCCCCCCeEEEEEeCCCCCCChhhhcCCCcc-eEEEcCCCCHHHHHHHHHHH
Q psy15151 310 DGFSSTADIKVIAATNRVDILDPALLRSGRLD-RKIEFPHPNEEARARIMQIH 361 (431)
Q Consensus 310 ~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~-~~i~~~~p~~~~r~~Il~~~ 361 (431)
....+.||...-..... -..+-|-++ ..++||.|+.++...|+..-
T Consensus 146 ----~~~~i~iils~~~~e~~--y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 146 ----NEPTIVIILSAPSCEKQ--YLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ----CCCceEEEEeccccHHH--hhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22344444443322211 122223333 48999999999999998754
No 279
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.06 E-value=4e-05 Score=69.08 Aligned_cols=104 Identities=18% Similarity=0.195 Sum_probs=58.9
Q ss_pred CceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhHhh------hcc-----------------------hH----
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQMF------IGD-----------------------GA---- 257 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~~~------~g~-----------------------~~---- 257 (431)
.++++||||||||+++..++.. .+.+.++++..+-...+ +|. ..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 3789999999999999988664 35566666542211110 010 00
Q ss_pred -HHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 258 -KLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 258 -~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
.....+...+....|.+|+||++..+... ........+..++..+.. .++.+|++++...
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~~ 141 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEecccc
Confidence 11233444555667899999999887431 012233444555555432 2455666665443
No 280
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.06 E-value=2e-05 Score=77.25 Aligned_cols=118 Identities=25% Similarity=0.315 Sum_probs=68.5
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhHh----hhc------------chHHHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQM----FIG------------DGAKLVRDAFALAK 268 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~~----~~g------------~~~~~~~~lf~~a~ 268 (431)
|++.++-+.++||||||||+||-.++.. .+...++++..+-... .+| ..+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 5667788999999999999999988753 4667777766332111 001 11222222333445
Q ss_pred hCCCeEEEEccccccccCCCCCCCcC--cHHHH-HHHHHHHHhhcCCCCCCCeEEEEEeC
Q psy15151 269 EKAPAIIFIDELDAIGTKRFDSEKAG--DREVQ-RTMLELLNQLDGFSSTADIKVIAATN 325 (431)
Q Consensus 269 ~~~p~vl~iDEid~l~~~r~~~~~~~--~~~~~-~~l~~lL~~~~~~~~~~~v~vI~ttn 325 (431)
...+.+|+||-+-.+.+...-....+ +...+ +.+.+.|..+.......++.+|+|..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67789999999999876321111111 11122 33445555544444456777777654
No 281
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.06 E-value=0.00022 Score=72.39 Aligned_cols=123 Identities=18% Similarity=0.191 Sum_probs=72.2
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCc
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKA 293 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~ 293 (431)
-++++||.+||||++++.+.......++.++..+........ ...-..+..+.......||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 799999999999999999998876655665554443322111 11111222222224469999999985
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHH
Q psy15151 294 GDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 356 (431)
Q Consensus 294 ~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~ 356 (431)
++..+.+..+.+... .++++.+++...-....+-.-+||. ..+.+.|.+..+...
T Consensus 107 --~~W~~~lk~l~d~~~-----~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 --PDWERALKYLYDRGN-----LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --hhHHHHHHHHHcccc-----ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 455566666665421 1333333332211112222235684 688888999988865
No 282
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.04 E-value=1.9e-05 Score=73.83 Aligned_cols=40 Identities=25% Similarity=0.427 Sum_probs=32.5
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehh
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGP 246 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~ 246 (431)
-|++.+.-++|+||||+|||++|..+|.. .+...+++++.
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 36667778999999999999999999874 35677777765
No 283
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.02 E-value=2e-05 Score=79.10 Aligned_cols=79 Identities=25% Similarity=0.434 Sum_probs=55.3
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhh------hcc--------hHHHHHHHHHHHHhC
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMF------IGD--------GAKLVRDAFALAKEK 270 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~------~g~--------~~~~~~~lf~~a~~~ 270 (431)
|+.++.-++|+|+||+|||+|+..+|... +..+++++..+-.... +|. ....+..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 56777889999999999999999998753 3467777654322211 111 122345566777777
Q ss_pred CCeEEEEccccccccC
Q psy15151 271 APAIIFIDELDAIGTK 286 (431)
Q Consensus 271 ~p~vl~iDEid~l~~~ 286 (431)
.|.+|+||+|..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999988644
No 284
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.01 E-value=6.4e-05 Score=65.31 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
....++++|+||+|||+++.-++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34579999999999999999999854
No 285
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.01 E-value=2.1e-05 Score=65.91 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=42.8
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.-.+|.||.-+++.+..++...+..+.. ..|.-+-|+||||||||++++.||+.
T Consensus 23 L~~~l~GQhla~~~v~~ai~~~l~~~~p------~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 23 LQRNLFGQHLAVEVVVNAIKGHLANPNP------RKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHcCCCC------CCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4567899999999999999877665411 23344559999999999999999997
No 286
>KOG2383|consensus
Probab=98.00 E-value=3.1e-05 Score=76.25 Aligned_cols=161 Identities=19% Similarity=0.272 Sum_probs=89.8
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcCCc--eEEeehhhhhHhh----------hcc-----hH----HHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTKST--FLKLAGPQLVQMF----------IGD-----GA----KLVRDAFALAK 268 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~~~--~i~i~~~~l~~~~----------~g~-----~~----~~~~~lf~~a~ 268 (431)
.+|+|++|||.-|||||+|.-.+...+... --++...+++... .|. .. .-+.-+-+...
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa 191 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIA 191 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHHh
Confidence 368999999999999999999888654321 1122233332211 010 00 00111111111
Q ss_pred hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC-CCCCChhhhcCCCcceEEEcC
Q psy15151 269 EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR-VDILDPALLRSGRLDRKIEFP 347 (431)
Q Consensus 269 ~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~-~~~l~~~l~r~gR~~~~i~~~ 347 (431)
....+|+|||+..- +-...-+|.+++..+- ..++++++|+|+ |+.|-..-+. +...+|
T Consensus 192 -~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQ-----R~~F~P 250 (467)
T KOG2383|consen 192 -EEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQ-----RENFIP 250 (467)
T ss_pred -hhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchh-----hhhhhh
Confidence 12369999999763 3333455667776653 358899999996 3444332222 111222
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHc-CC--C-CHHHHHHHHHHHHH
Q psy15151 348 HPNEEARARIMQIHSRKMNVSPDVNYEELSRST-DD--F-NGAQCKAVCVEAGM 397 (431)
Q Consensus 348 ~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~-~g--~-s~~di~~l~~~A~~ 397 (431)
-..+++.++.-..+.+.+|....+... .+ | +..|...++.+...
T Consensus 251 ------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 251 ------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred ------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH
Confidence 346777778777788888877333221 11 2 33377777777664
No 287
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.00 E-value=3.8e-05 Score=75.22 Aligned_cols=118 Identities=25% Similarity=0.305 Sum_probs=68.6
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhHh----hhc------------chHHHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQM----FIG------------DGAKLVRDAFALAK 268 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~~----~~g------------~~~~~~~~lf~~a~ 268 (431)
|++++..++|+||||||||+||-.++.. .+...+++++.+.... .+| ..+..+..+...++
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 5667788999999999999998877654 3566777766432221 011 11222333334455
Q ss_pred hCCCeEEEEccccccccCCCCCCC--cCcHHHH-HHHHHHHHhhcCCCCCCCeEEEEEeC
Q psy15151 269 EKAPAIIFIDELDAIGTKRFDSEK--AGDREVQ-RTMLELLNQLDGFSSTADIKVIAATN 325 (431)
Q Consensus 269 ~~~p~vl~iDEid~l~~~r~~~~~--~~~~~~~-~~l~~lL~~~~~~~~~~~v~vI~ttn 325 (431)
...+.+|+||-+-.+.+...-... ..+...+ +.+.++|..+.......++.+|+|..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 677899999999998754211111 0111122 33335555444444556777777754
No 288
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.99 E-value=8.1e-05 Score=70.63 Aligned_cols=115 Identities=14% Similarity=0.197 Sum_probs=65.8
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCc------eEEe------ehhhhhHhh--------hcchHHH-H---HHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKST------FLKL------AGPQLVQMF--------IGDGAKL-V---RDAFAL 266 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~------~i~i------~~~~l~~~~--------~g~~~~~-~---~~lf~~ 266 (431)
.+..++|.||+|+|||++++.+++..... ++.+ +..++.... .+.+... + ..++..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999876542 2231 112222222 2222211 1 122222
Q ss_pred H----HhCCCeEEEEccccccccCCCC--------CCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q psy15151 267 A----KEKAPAIIFIDELDAIGTKRFD--------SEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN 325 (431)
Q Consensus 267 a----~~~~p~vl~iDEid~l~~~r~~--------~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn 325 (431)
+ ..+...+||+||+.++...-.+ ...+.++.+...+-+++.........+.+.++.|+.
T Consensus 95 a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~ 165 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATAL 165 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeehe
Confidence 2 2355789999999987432211 122335556666667776544433466777775544
No 289
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.97 E-value=1.8e-05 Score=73.72 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=22.8
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++.-+-|.||+|||||||.+.+|.-
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667889999999999999999983
No 290
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.97 E-value=1.9e-05 Score=82.63 Aligned_cols=107 Identities=30% Similarity=0.421 Sum_probs=68.3
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHHHc-------CCc----eEEee------------------------hhhhh--
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQT-------KST----FLKLA------------------------GPQLV-- 249 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~~~-------~~~----~i~i~------------------------~~~l~-- 249 (431)
+.++++.++|+.||+|||||+|.|++|.-. ..| .+.+. ..++.
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~v 493 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAV 493 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHH
Confidence 345688999999999999999999999831 111 11110 01111
Q ss_pred ----------Hhhhcc--------hHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC
Q psy15151 250 ----------QMFIGD--------GAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 311 (431)
Q Consensus 250 ----------~~~~g~--------~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~ 311 (431)
+.+-+. .....+-.|..+--+.|.++||||.-.. -+++.+..|+++++.
T Consensus 494 L~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA----------LDe~~e~~l~q~l~~--- 560 (604)
T COG4178 494 LHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA----------LDEETEDRLYQLLKE--- 560 (604)
T ss_pred HHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc----------cChHHHHHHHHHHHh---
Confidence 110000 1222355677777789999999998653 266777888888876
Q ss_pred CCCCCCeEEEEEeCCCC
Q psy15151 312 FSSTADIKVIAATNRVD 328 (431)
Q Consensus 312 ~~~~~~v~vI~ttn~~~ 328 (431)
.-.++.||..+.++.
T Consensus 561 --~lp~~tvISV~Hr~t 575 (604)
T COG4178 561 --ELPDATVISVGHRPT 575 (604)
T ss_pred --hCCCCEEEEeccchh
Confidence 225666787777654
No 291
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.96 E-value=0.00037 Score=68.64 Aligned_cols=82 Identities=22% Similarity=0.247 Sum_probs=52.7
Q ss_pred CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC---------------CCChhh
Q psy15151 270 KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD---------------ILDPAL 334 (431)
Q Consensus 270 ~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~---------------~l~~~l 334 (431)
..+-||+|||+|++ +++....+++.+..+- ...++++|.+.+... ......
T Consensus 171 ~~~iViiIDdLDR~-----------~~~~i~~~l~~ik~~~---~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~y 236 (325)
T PF07693_consen 171 KKRIVIIIDDLDRC-----------SPEEIVELLEAIKLLL---DFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREY 236 (325)
T ss_pred CceEEEEEcchhcC-----------CcHHHHHHHHHHHHhc---CCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHH
Confidence 34679999999998 4444444555555543 337788888776310 111233
Q ss_pred hcCCCcceEEEcCCCCHHHHHHHHHHHHhcCC
Q psy15151 335 LRSGRLDRKIEFPHPNEEARARIMQIHSRKMN 366 (431)
Q Consensus 335 ~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~ 366 (431)
+.. -|+..+.+|+|+..+...++...+....
T Consensus 237 LeK-iiq~~~~lP~~~~~~~~~~~~~~~~~~~ 267 (325)
T PF07693_consen 237 LEK-IIQVPFSLPPPSPSDLERYLNELLESLE 267 (325)
T ss_pred HHh-hcCeEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 321 4677899999999998888887755433
No 292
>KOG0481|consensus
Probab=97.92 E-value=3.9e-05 Score=77.46 Aligned_cols=225 Identities=21% Similarity=0.257 Sum_probs=120.9
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchH
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGA 257 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~ 257 (431)
-.|.|.++.++.+.-.+-...... +-..+.+...-+|||.|.|||.|+-|.|.+-.-....++.-.- -+.-.|-+.
T Consensus 331 PSIfG~~DiKkAiaClLFgGsrK~-LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGK---GSSAAGLTA 406 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFGGSRKR-LPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGK---GSSAAGLTA 406 (729)
T ss_pred chhcCchhHHHHHHHHhhcCcccc-CCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCC---Cccccccee
Confidence 346777777777654332111100 0000111122369999999999999999887643322221100 000001110
Q ss_pred HHHH-----------HHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHh----h--cCCC--CCCCe
Q psy15151 258 KLVR-----------DAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ----L--DGFS--STADI 318 (431)
Q Consensus 258 ~~~~-----------~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~----~--~~~~--~~~~v 318 (431)
..++ ...-.|. .+|++|||+|++- .+..-.+.+.+++ + .|+. -+.+.
T Consensus 407 SV~RD~~tReFylEGGAMVLAD---gGVvCIDEFDKMr-----------e~DRVAIHEAMEQQTISIAKAGITT~LNSRt 472 (729)
T KOG0481|consen 407 SVIRDPSTREFYLEGGAMVLAD---GGVVCIDEFDKMR-----------EDDRVAIHEAMEQQTISIAKAGITTTLNSRT 472 (729)
T ss_pred eEEecCCcceEEEecceEEEec---CCEEEeehhhccC-----------chhhhHHHHHHHhhhHHHhhhcceeeecchh
Confidence 0000 0001122 3599999999982 2222233333332 1 1111 24566
Q ss_pred EEEEEeCCCC-----------C--CChhhhcCCCcceEEEcCCCCHHHHH-----HHHHHHHhcCCCC--------CCCC
Q psy15151 319 KVIAATNRVD-----------I--LDPALLRSGRLDRKIEFPHPNEEARA-----RIMQIHSRKMNVS--------PDVN 372 (431)
Q Consensus 319 ~vI~ttn~~~-----------~--l~~~l~r~gR~~~~i~~~~p~~~~r~-----~Il~~~l~~~~~~--------~~~~ 372 (431)
-|++++|... . +-|.+++ |||.++.+..-..+++- .++..|..+.+.. ..+.
T Consensus 473 SVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~ 550 (729)
T KOG0481|consen 473 SVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIP 550 (729)
T ss_pred hhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCccc
Confidence 6888888632 2 4478899 99998888765444433 3444444311111 1111
Q ss_pred HHHHHHH------------------------------------------cCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Q psy15151 373 YEELSRS------------------------------------------TDDFNGAQCKAVCVEAGMIALRRGAAIVTHE 410 (431)
Q Consensus 373 ~~~la~~------------------------------------------~~g~s~~di~~l~~~A~~~A~~~~~~~It~e 410 (431)
++.+-+. +-..+.++++++++-+...|..+-....|..
T Consensus 551 ~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~ 630 (729)
T KOG0481|consen 551 IEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEA 630 (729)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHH
Confidence 2111110 0012568899999999888988888899999
Q ss_pred HHHHHHHHHHHh
Q psy15151 411 DFMDAIMEVQAK 422 (431)
Q Consensus 411 d~~~Al~~~~~~ 422 (431)
|+.+|++.++-+
T Consensus 631 hV~EA~RLF~vS 642 (729)
T KOG0481|consen 631 HVEEALRLFQVS 642 (729)
T ss_pred HHHHHHHHHhHh
Confidence 999999998765
No 293
>PHA00729 NTP-binding motif containing protein
Probab=97.89 E-value=2e-05 Score=73.09 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~ 237 (431)
.+++|+|+||||||++|.+++..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999864
No 294
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.88 E-value=8.8e-06 Score=68.01 Aligned_cols=31 Identities=29% Similarity=0.632 Sum_probs=27.1
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEEeeh
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAG 245 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~i~~ 245 (431)
|+|.||||+||||+|+.||+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999877765544
No 295
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.88 E-value=5e-05 Score=71.45 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=30.6
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeeh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAG 245 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~ 245 (431)
|++.+..++++||||||||+++..++.. .+...++++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 6778889999999999999999999754 3556666654
No 296
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.87 E-value=6e-05 Score=70.01 Aligned_cols=118 Identities=20% Similarity=0.307 Sum_probs=64.3
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh----hHhhhcc-------------------hHHHH
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL----VQMFIGD-------------------GAKLV 260 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l----~~~~~g~-------------------~~~~~ 260 (431)
-|++++..++++|+||+|||+++..+|... +.+.++++.... +....+. ....+
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAI 93 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHH
Confidence 366777889999999999999999998753 456666654321 1111110 01112
Q ss_pred HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 261 RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 261 ~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
..+...+. ..+.+|+||-+-.+.....+.. .........+.+++..+..+....++.+|++...
T Consensus 94 ~~~~~~~~-~~~~lvvIDsi~~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~ 157 (218)
T cd01394 94 QETETFAD-EKVDLVVVDSATALYRLELGDD-DTTIKNYRELAKQLTFLLWLARKHDVAVVITNQV 157 (218)
T ss_pred HHHHHHHh-cCCcEEEEechHHhhhHHhcCc-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 22322232 3378999999998853211111 0112223334444433333334456777777654
No 297
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.86 E-value=5.4e-05 Score=72.66 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=44.3
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCC----------ceEEee-hhhhhHhhh-------cc------hHHHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKS----------TFLKLA-GPQLVQMFI-------GD------GAKLVRDAFALAK 268 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~----------~~i~i~-~~~l~~~~~-------g~------~~~~~~~lf~~a~ 268 (431)
.+++|.||+|+|||++.++++..... .+..++ ..++...+. |. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999997532 222222 123322111 11 1111334667777
Q ss_pred hCCCeEEEEcccc
Q psy15151 269 EKAPAIIFIDELD 281 (431)
Q Consensus 269 ~~~p~vl~iDEid 281 (431)
...|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999964
No 298
>KOG1051|consensus
Probab=97.85 E-value=0.00015 Score=78.97 Aligned_cols=162 Identities=23% Similarity=0.299 Sum_probs=110.9
Q ss_pred cccccCc-hHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEeeh
Q psy15151 177 YSDIGGL-DKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKLAG 245 (431)
Q Consensus 177 ~~~i~G~-~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i~~ 245 (431)
.+-++|. ++.++++.+.+.+- ..++-+|.|.||+|||.++.-+|+.. ...++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~Rr-------------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRK-------------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhcc-------------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 5667777 88888888876642 33678999999999999999999852 234566666
Q ss_pred hhhh--HhhhcchHHHHHHHHHHHH-hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEE
Q psy15151 246 PQLV--QMFIGDGAKLVRDAFALAK-EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIA 322 (431)
Q Consensus 246 ~~l~--~~~~g~~~~~~~~lf~~a~-~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ 322 (431)
..++ .++-|+.+..++.+...+. .+...||||||++.+.+.... .+..+..+.|.-+| ..+.+.+|+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~---~~~~d~~nlLkp~L-------~rg~l~~IG 321 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN---YGAIDAANLLKPLL-------ARGGLWCIG 321 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc---chHHHHHHhhHHHH-------hcCCeEEEe
Confidence 5443 3456778888888888887 456778999999999776533 11222223333333 234488898
Q ss_pred EeCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhc
Q psy15151 323 ATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK 364 (431)
Q Consensus 323 ttn~~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~ 364 (431)
||..-. .-+|++-+ ||+ .+.++.|+.+....|+......
T Consensus 322 atT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 322 ATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 876322 25789999 996 5668888877766666654433
No 299
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.84 E-value=6.6e-05 Score=65.74 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=25.8
Q ss_pred hcCCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 206 NLGIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 206 ~~g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++.+.++..++|.||+|||||+|.|++|.-
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 344567788999999999999999999983
No 300
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.84 E-value=9.3e-05 Score=73.81 Aligned_cols=114 Identities=15% Similarity=0.205 Sum_probs=63.0
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCC-----ceEEeehhh-------hhHhh---------hcchHHHHH---HHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKS-----TFLKLAGPQ-------LVQMF---------IGDGAKLVR---DAFAL 266 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~-----~~i~i~~~~-------l~~~~---------~g~~~~~~~---~lf~~ 266 (431)
.+...+|.||||+|||+|++.+++.... ..+.+...+ +.... ...+...++ .+++.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999986532 212111111 11111 111222222 22333
Q ss_pred HH----hCCCeEEEEccccccccCCCC--------CCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q psy15151 267 AK----EKAPAIIFIDELDAIGTKRFD--------SEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT 324 (431)
Q Consensus 267 a~----~~~p~vl~iDEid~l~~~r~~--------~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt 324 (431)
|. .+...+||||||++++..... ...+-++.+...+-.++.........+.+.+|+|.
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 32 345679999999997543211 11233444555555666654444445677777764
No 301
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.81 E-value=1.8e-05 Score=70.33 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=30.7
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
+++..++|+|+||||||++|+.+|..++.+++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46678999999999999999999999998887543
No 302
>PRK08118 topology modulation protein; Reviewed
Probab=97.80 E-value=4.3e-05 Score=68.11 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=30.1
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeeh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG 245 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~ 245 (431)
..|++.||||+||||+|+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 358999999999999999999999999888875
No 303
>PHA02624 large T antigen; Provisional
Probab=97.77 E-value=7.3e-05 Score=78.05 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=72.4
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCC
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 287 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r 287 (431)
|++..+.++|+||||||||+++.+|++.++...+.++++.--+. |...-.....+++||++-.-+-..
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 55556689999999999999999999999777777876532111 211111122389999986433211
Q ss_pred CCCCCcCcHHHHHHHHHHHHhhcCC-C------CCC-----CeEEEEEeCCCCCCChhhhcCCCcceEEEcCC
Q psy15151 288 FDSEKAGDREVQRTMLELLNQLDGF-S------STA-----DIKVIAATNRVDILDPALLRSGRLDRKIEFPH 348 (431)
Q Consensus 288 ~~~~~~~~~~~~~~l~~lL~~~~~~-~------~~~-----~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~ 348 (431)
.+-..+.. ..-+..+-+.+||. . ... -...|.|||. ..++..+.- ||-.++.|.+
T Consensus 495 ~~Lp~G~~---~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQG---MNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccCCcccc---cchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 11000000 01122334445554 1 011 1226778884 557777877 9988888864
No 304
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.77 E-value=0.00054 Score=76.97 Aligned_cols=154 Identities=17% Similarity=0.245 Sum_probs=87.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehh--h-----hhHhh---h-----cc---------------hHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP--Q-----LVQMF---I-----GD---------------GAKLVR 261 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~--~-----l~~~~---~-----g~---------------~~~~~~ 261 (431)
.+-++++||+|.|||+++..++...+ ++..++.. + +...+ + +. ....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 35689999999999999999987666 55544332 1 11110 0 00 001122
Q ss_pred HHHHHHHh-CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCCh-hhhcCCC
Q psy15151 262 DAFALAKE-KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDP-ALLRSGR 339 (431)
Q Consensus 262 ~lf~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~-~l~r~gR 339 (431)
.++..... ..|.+|+|||+|.+ .++.+...+..++... ..++.+|++|.....+.- .+.-.
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~----------~~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~-- 173 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLI----------TNPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR-- 173 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcC----------CChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc--
Confidence 33333333 67899999999998 2344445566666542 345556556654222221 22211
Q ss_pred cceEEEcC----CCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHH
Q psy15151 340 LDRKIEFP----HPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGA 386 (431)
Q Consensus 340 ~~~~i~~~----~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~ 386 (431)
+..+.+. +.+.++..+++...+. ..++ ......|...|.|+..+
T Consensus 174 -~~~~~l~~~~l~f~~~e~~~ll~~~~~-~~~~-~~~~~~l~~~t~Gwp~~ 221 (903)
T PRK04841 174 -DQLLEIGSQQLAFDHQEAQQFFDQRLS-SPIE-AAESSRLCDDVEGWATA 221 (903)
T ss_pred -CcceecCHHhCCCCHHHHHHHHHhccC-CCCC-HHHHHHHHHHhCChHHH
Confidence 2234444 7788999998876543 2222 23467788888877633
No 305
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.76 E-value=1.9e-05 Score=81.93 Aligned_cols=62 Identities=18% Similarity=0.310 Sum_probs=46.0
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC-CceEEe
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK-STFLKL 243 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~-~~~i~i 243 (431)
.-|+++.|+++.++++.+.+....... + .....++|.||||+|||+||++||+.+. .+++.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl------~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~ 135 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGL------E-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVL 135 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhc------C-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceee
Confidence 357899999999999998875432211 1 1335788999999999999999999653 244444
No 306
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.74 E-value=0.00012 Score=65.71 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=67.8
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCCc-------------eEEeehhhhhHhh----------hcch--HHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKST-------------FLKLAGPQLVQMF----------IGDG--AKLVRDA 263 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~~-------------~i~i~~~~l~~~~----------~g~~--~~~~~~l 263 (431)
+.++..+.|.||+|+|||+|.+++....+.. +..+.-.+++..+ ...- ....+-.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~ 97 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVK 97 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHH
Confidence 4567788999999999999999997432211 1121111111111 0111 1112334
Q ss_pred HHHHHhCC--CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcc
Q psy15151 264 FALAKEKA--PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLD 341 (431)
Q Consensus 264 f~~a~~~~--p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~ 341 (431)
+..+-... |.++++||--.- -+......+.+++..+. . .+..||++|+..+. .+ ..|
T Consensus 98 laral~~~~~p~llLlDEPt~~----------LD~~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~-----~~--~~d 156 (176)
T cd03238 98 LASELFSEPPGTLFILDEPSTG----------LHQQDINQLLEVIKGLI---D-LGNTVILIEHNLDV-----LS--SAD 156 (176)
T ss_pred HHHHHhhCCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHH---h-CCCEEEEEeCCHHH-----HH--hCC
Confidence 44555566 899999997653 26666677777777653 1 24457777776542 23 456
Q ss_pred eEEEcC
Q psy15151 342 RKIEFP 347 (431)
Q Consensus 342 ~~i~~~ 347 (431)
+++.+.
T Consensus 157 ~i~~l~ 162 (176)
T cd03238 157 WIIDFG 162 (176)
T ss_pred EEEEEC
Confidence 666664
No 307
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.73 E-value=0.00017 Score=66.13 Aligned_cols=106 Identities=14% Similarity=0.256 Sum_probs=58.0
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH-----cCCce-------------EEeehhhhhHh---hhcchHHHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ-----TKSTF-------------LKLAGPQLVQM---FIGDGAKLVRDAFALAK 268 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~-----~~~~~-------------i~i~~~~l~~~---~~g~~~~~~~~lf~~a~ 268 (431)
..+.-++|.||+|+|||+++|.++.. .|.++ ..+...+-+.. ........+..+++.+.
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~ 102 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAK 102 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhcc
Confidence 34567899999999999999999853 33321 11111111100 00111133455666555
Q ss_pred hCCCeEEEEccccccccCCCCCCCcCcHHHHH-HHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 269 EKAPAIIFIDELDAIGTKRFDSEKAGDREVQR-TMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 269 ~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~-~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
...|.++++||.-.-. ++.... .+..++..+.. .+..+|++|...+.
T Consensus 103 ~~~p~llllDEp~~gl----------D~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~ 150 (199)
T cd03283 103 KGEPVLFLLDEIFKGT----------NSRERQAASAAVLKFLKN----KNTIGIISTHDLEL 150 (199)
T ss_pred CCCCeEEEEecccCCC----------CHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHH
Confidence 4578999999975421 222222 23345555431 24567788876544
No 308
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.71 E-value=0.00018 Score=63.80 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=65.4
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehhhh--------hHhhhcc----h-HHHHHHHHHHHHhCCCe
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGPQL--------VQMFIGD----G-AKLVRDAFALAKEKAPA 273 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~~l--------~~~~~g~----~-~~~~~~lf~~a~~~~p~ 273 (431)
+.++..+.|.||+|+|||+|.+.++..... --+.++...+ ....++. + ....+-.+..+-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 457788999999999999999999985321 1122322111 1111111 1 12233455666667899
Q ss_pred EEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 274 IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 274 vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
++++||--.- -+......+.+++..+.. .+..+|++|+..+
T Consensus 103 illlDEP~~~----------LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~ 143 (163)
T cd03216 103 LLILDEPTAA----------LTPAEVERLFKVIRRLRA----QGVAVIFISHRLD 143 (163)
T ss_pred EEEEECCCcC----------CCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH
Confidence 9999997643 266677778888876531 2345677777544
No 309
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.71 E-value=0.00011 Score=63.09 Aligned_cols=37 Identities=27% Similarity=0.549 Sum_probs=29.4
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
|++.||||+|||++|+.++..++ ...++...+.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 68999999999999999999988 45566655555443
No 310
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.71 E-value=0.0008 Score=63.18 Aligned_cols=132 Identities=18% Similarity=0.266 Sum_probs=77.0
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCce--EEeehhhhhHh---hh-----cc-----h-HHH----HHHHHHHHH--
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTF--LKLAGPQLVQM---FI-----GD-----G-AKL----VRDAFALAK-- 268 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~--i~i~~~~l~~~---~~-----g~-----~-~~~----~~~lf~~a~-- 268 (431)
.+-.+++.|++|||||++++.+.......| +.+-++..... ++ .. . +.. ...+-+...
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 456899999999999999999987654322 22222211111 10 00 0 000 111111111
Q ss_pred -h---CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEE
Q psy15151 269 -E---KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKI 344 (431)
Q Consensus 269 -~---~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i 344 (431)
. .++.+|+||++..- ..-...+.+++.. ...-++.+|.++.....+++.++. -++..+
T Consensus 92 ~~~k~~~~~LiIlDD~~~~------------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i 153 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK------------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFI 153 (241)
T ss_pred cccCCCCCeEEEEeCCCCc------------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEE
Confidence 1 23679999997431 1112445666654 234578899999999999999877 777777
Q ss_pred EcCCCCHHHHHHHHHHH
Q psy15151 345 EFPHPNEEARARIMQIH 361 (431)
Q Consensus 345 ~~~~p~~~~r~~Il~~~ 361 (431)
.++ .+...+..|++..
T Consensus 154 ~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNM 169 (241)
T ss_pred Eec-CcHHHHHHHHHhc
Confidence 775 4666666555543
No 311
>PRK04296 thymidine kinase; Provisional
Probab=97.70 E-value=0.00034 Score=63.68 Aligned_cols=70 Identities=21% Similarity=0.162 Sum_probs=40.3
Q ss_pred CceeeCCCCCchHHHHHHHHHHc---CCceEEeeh----hhh---hHhhhcchH-----HHHHHHHHHH--HhCCCeEEE
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQT---KSTFLKLAG----PQL---VQMFIGDGA-----KLVRDAFALA--KEKAPAIIF 276 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~---~~~~i~i~~----~~l---~~~~~g~~~-----~~~~~lf~~a--~~~~p~vl~ 276 (431)
-.+++||+|+|||+++..++... +..++.+.. ... +....|... .....++..+ ....+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887753 444444432 110 001112110 1122333333 334678999
Q ss_pred Ecccccc
Q psy15151 277 IDELDAI 283 (431)
Q Consensus 277 iDEid~l 283 (431)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999876
No 312
>PRK07261 topology modulation protein; Provisional
Probab=97.69 E-value=7.5e-05 Score=66.81 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=29.0
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehh
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP 246 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~ 246 (431)
.+++.|+||+||||+|+.++..++.+++..+.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 478999999999999999999999888777653
No 313
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.69 E-value=0.00022 Score=61.83 Aligned_cols=101 Identities=22% Similarity=0.268 Sum_probs=60.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehh---hhhHhhhcchHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGP---QLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAI 283 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~---~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l 283 (431)
+.++..+.|.||+|+|||+|+++++..... --+.++.. .++..+. .....+-.+..+-...|.++++||-..-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 356778899999999999999999986421 11222211 0000011 1112233345555677899999997653
Q ss_pred ccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 284 GTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 284 ~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
-+......+.+++..+ +..+|++|+..+
T Consensus 101 ----------LD~~~~~~l~~~l~~~-------~~til~~th~~~ 128 (144)
T cd03221 101 ----------LDLESIEALEEALKEY-------PGTVILVSHDRY 128 (144)
T ss_pred ----------CCHHHHHHHHHHHHHc-------CCEEEEEECCHH
Confidence 2556666777777654 125777777544
No 314
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.69 E-value=0.00092 Score=68.47 Aligned_cols=193 Identities=12% Similarity=0.167 Sum_probs=95.1
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhh-------Hh--------hhcc-----hHHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLV-------QM--------FIGD-----GAKLVRDAFALA 267 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~-------~~--------~~g~-----~~~~~~~lf~~a 267 (431)
+|..++|+|++|+|||+++..+|..+ +..+..+++..+- .. +.+. ....+...++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 56789999999999999999998864 3444444443220 00 1111 112233444444
Q ss_pred HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC-CCCCCh--hhhcCCCcceEE
Q psy15151 268 KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR-VDILDP--ALLRSGRLDRKI 344 (431)
Q Consensus 268 ~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~-~~~l~~--~l~r~gR~~~~i 344 (431)
... .+|+||....+.. +......+..+... .....+++++.+.. .+.++. .+...-.++ -+
T Consensus 174 ~~~--DvVIIDTAGr~~~---------d~~lm~El~~l~~~----~~pdevlLVvda~~gq~av~~a~~F~~~l~i~-gv 237 (437)
T PRK00771 174 KKA--DVIIVDTAGRHAL---------EEDLIEEMKEIKEA----VKPDEVLLVIDATIGQQAKNQAKAFHEAVGIG-GI 237 (437)
T ss_pred hcC--CEEEEECCCcccc---------hHHHHHHHHHHHHH----hcccceeEEEeccccHHHHHHHHHHHhcCCCC-EE
Confidence 443 6999999877521 11222222222221 12334444444332 222221 111110122 34
Q ss_pred EcCCCCHHHHHH-HHHHHH-hcCCC---------C--CCCCHHHHHHHcCCCCHHHHHHHHHHHHHH---------HHHh
Q psy15151 345 EFPHPNEEARAR-IMQIHS-RKMNV---------S--PDVNYEELSRSTDDFNGAQCKAVCVEAGMI---------ALRR 402 (431)
Q Consensus 345 ~~~~p~~~~r~~-Il~~~l-~~~~~---------~--~~~~~~~la~~~~g~s~~di~~l~~~A~~~---------A~~~ 402 (431)
.+...|...+.- ++.... .+.++ + ...+.+.++.+.-|. +|+..++..|... +.+-
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~~~~~~~~~~~~~ 315 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEALDEEEEEKDVEKM 315 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455555544332 222111 11111 1 234567777777554 4666666644332 1111
Q ss_pred CCCCcCHHHHHHHHHHHHH
Q psy15151 403 GAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 403 ~~~~It~ed~~~Al~~~~~ 421 (431)
.....+.+||.+-++.++.
T Consensus 316 ~~~~f~l~d~~~q~~~~~k 334 (437)
T PRK00771 316 MKGKFTLKDMYKQLEAMNK 334 (437)
T ss_pred HcCCcCHHHHHHHHHHHHh
Confidence 2456899999998887764
No 315
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.69 E-value=0.0004 Score=65.49 Aligned_cols=39 Identities=31% Similarity=0.350 Sum_probs=29.9
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeeh
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAG 245 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~ 245 (431)
=|++++..+|++||||+|||++|-.++.. .+.+.+++..
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 37788899999999999999999876553 3555555543
No 316
>PRK09354 recA recombinase A; Provisional
Probab=97.69 E-value=0.00014 Score=71.90 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=51.0
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhHh------------hh----cchHHHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQM------------FI----GDGAKLVRDAFALAK 268 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~~------------~~----g~~~~~~~~lf~~a~ 268 (431)
|++.++.++|+||||||||+||-.++.. .+...++++..+-... ++ ...+..+..+-..++
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 5667788999999999999999987653 4667777766432111 00 011222222223445
Q ss_pred hCCCeEEEEcccccccc
Q psy15151 269 EKAPAIIFIDELDAIGT 285 (431)
Q Consensus 269 ~~~p~vl~iDEid~l~~ 285 (431)
...+.+|+||=+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 66789999999999875
No 317
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.68 E-value=0.00015 Score=66.41 Aligned_cols=67 Identities=24% Similarity=0.372 Sum_probs=41.7
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCC----ceEEeeh-hhhhH---------hhhcchHHHHHHHHHHHHhCCCeEEEEcc
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKS----TFLKLAG-PQLVQ---------MFIGDGAKLVRDAFALAKEKAPAIIFIDE 279 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~----~~i~i~~-~~l~~---------~~~g~~~~~~~~lf~~a~~~~p~vl~iDE 279 (431)
-++|.||+|+|||+++++++..... .++.+.. .++.. .-+|.........+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999887542 2222211 12111 01122222344455566667799999999
Q ss_pred c
Q psy15151 280 L 280 (431)
Q Consensus 280 i 280 (431)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 318
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.67 E-value=7.3e-05 Score=68.25 Aligned_cols=123 Identities=21% Similarity=0.189 Sum_probs=59.1
Q ss_pred ceeeCCCCCchHHHHHHH-HHH---cCCceEEeehhhhh----HhhhcchHH-------------HHHHHHHHHHhCCCe
Q psy15151 215 VLLYGPPGTGKTLLARAC-AAQ---TKSTFLKLAGPQLV----QMFIGDGAK-------------LVRDAFALAKEKAPA 273 (431)
Q Consensus 215 vLl~GppGtGKT~lakal-a~~---~~~~~i~i~~~~l~----~~~~g~~~~-------------~~~~lf~~a~~~~p~ 273 (431)
.+++|.||+|||+.|-.. ... .+.+++. +...+- ....+.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999988655 332 3555443 433221 111011000 001111111111457
Q ss_pred EEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCC
Q psy15151 274 IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHP 349 (431)
Q Consensus 274 vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p 349 (431)
+|+|||++.+.+.+..... .....+ +++... ...+.-||++|..+..+++.+++ ..+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~~----~~~~~~-~~l~~h----Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK----KVPEII-EFLAQH----RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T--------HHH-HGGGGC----CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccccc----cchHHH-HHHHHh----CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 9999999999888733111 112233 444442 34567799999999999999987 88777776544
No 319
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.67 E-value=0.00026 Score=73.09 Aligned_cols=78 Identities=27% Similarity=0.376 Sum_probs=54.1
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhh------hcch--------HHHHHHHHHHHHhC
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMF------IGDG--------AKLVRDAFALAKEK 270 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~------~g~~--------~~~~~~lf~~a~~~ 270 (431)
|+.++.-++|+|+||+|||+|+..++... +...++++..+-.... +|.. +..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 67788889999999999999999997753 3466777664332211 1111 11234556666777
Q ss_pred CCeEEEEcccccccc
Q psy15151 271 APAIIFIDELDAIGT 285 (431)
Q Consensus 271 ~p~vl~iDEid~l~~ 285 (431)
.|.+|+||.|..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998754
No 320
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.00028 Score=64.91 Aligned_cols=71 Identities=21% Similarity=0.322 Sum_probs=47.5
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcC--------CceEEeeh-hhhhHhhhcch-------------HHHHHHHHHHHHhC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTK--------STFLKLAG-PQLVQMFIGDG-------------AKLVRDAFALAKEK 270 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~--------~~~i~i~~-~~l~~~~~g~~-------------~~~~~~lf~~a~~~ 270 (431)
.+.|+.||||||||++.|-+|.-+. ..+..++. +++.....|.+ .-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 4689999999999999999998532 22333443 33333222222 11224466788889
Q ss_pred CCeEEEEcccccc
Q psy15151 271 APAIIFIDELDAI 283 (431)
Q Consensus 271 ~p~vl~iDEid~l 283 (431)
.|-|+++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999764
No 321
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.66 E-value=0.00014 Score=68.25 Aligned_cols=117 Identities=20% Similarity=0.308 Sum_probs=64.5
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---------CCceEEeehhhhh--Hhh------hc----------------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---------KSTFLKLAGPQLV--QMF------IG---------------- 254 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---------~~~~i~i~~~~l~--~~~------~g---------------- 254 (431)
|++++.-+.|+||||+|||+++..++... +...++++..+-. ..+ .+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 67777889999999999999999998542 2466677654310 000 00
Q ss_pred ---chHHHHHHHHHHHHhC-CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q psy15151 255 ---DGAKLVRDAFALAKEK-APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN 325 (431)
Q Consensus 255 ---~~~~~~~~lf~~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn 325 (431)
+....+..+-...... .+.+|+||-+..+......... ...+-.+.+.+++..+..+....++.||+|..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRG-ELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 0011112222333445 7899999999987532111110 01222344555555544333445666666643
No 322
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00015 Score=68.42 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 261 RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 261 ~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
|-+++.|-...|.++++||--. +-+...+..+.++|.++.. . +..|++.|.....+
T Consensus 147 RV~lARAL~~~p~lllLDEP~~----------gvD~~~~~~i~~lL~~l~~---e-g~tIl~vtHDL~~v 202 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFT----------GVDVAGQKEIYDLLKELRQ---E-GKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCcHHh
Confidence 4456777778899999999543 2366777889999988753 3 56688888765543
No 323
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00038 Score=64.82 Aligned_cols=136 Identities=10% Similarity=0.032 Sum_probs=95.8
Q ss_pred CCCceeeCCCC-CchHHHHHHHHHHcCC--------c-eEEeehhhhhHhh-hcchHHHHHHHHHHHH----hCCCeEEE
Q psy15151 212 PKGVLLYGPPG-TGKTLLARACAAQTKS--------T-FLKLAGPQLVQMF-IGDGAKLVRDAFALAK----EKAPAIIF 276 (431)
Q Consensus 212 ~~~vLl~GppG-tGKT~lakala~~~~~--------~-~i~i~~~~l~~~~-~g~~~~~~~~lf~~a~----~~~p~vl~ 276 (431)
.+.+||.|..+ +||..++..++..+.. | +..+....-..+. -.-+...+|.+.+.+. .+...|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 36799999998 9999999988876432 1 2222211000000 0013344565555443 34567999
Q ss_pred EccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHH
Q psy15151 277 IDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 356 (431)
Q Consensus 277 iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~ 356 (431)
|+++|.+ ..+..+.|+..|++ ++.++++|.+|+.+..+.|.+++ |+ ..+.|+.|+...-.+
T Consensus 95 I~~ae~m-----------t~~AANALLKtLEE-----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 95 IYSAELM-----------NLNAANSCLKILED-----APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNE 155 (263)
T ss_pred EechHHh-----------CHHHHHHHHHhhcC-----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHH
Confidence 9999999 77778888888876 56788899999999999999999 88 678999999988888
Q ss_pred HHHHHHhcCC
Q psy15151 357 IMQIHSRKMN 366 (431)
Q Consensus 357 Il~~~l~~~~ 366 (431)
.....+....
T Consensus 156 ~~~~~~~p~~ 165 (263)
T PRK06581 156 LYSQFIQPIA 165 (263)
T ss_pred HHHHhccccc
Confidence 7776665443
No 324
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.64 E-value=4.6e-05 Score=67.95 Aligned_cols=23 Identities=35% Similarity=0.706 Sum_probs=20.1
Q ss_pred CceeeCCCCCchHHHHHHHHHHc
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~ 236 (431)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47999999999999999999876
No 325
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00018 Score=65.56 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 261 RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 261 ~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
|-.+..|....|.|++|||.-.. -+++....++.++..+.
T Consensus 144 RVAIARALaM~P~vmLFDEPTSA----------LDPElv~EVL~vm~~LA 183 (240)
T COG1126 144 RVAIARALAMDPKVMLFDEPTSA----------LDPELVGEVLDVMKDLA 183 (240)
T ss_pred HHHHHHHHcCCCCEEeecCCccc----------CCHHHHHHHHHHHHHHH
Confidence 44556666778999999998764 38888888777777654
No 326
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.62 E-value=0.00019 Score=66.99 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=64.1
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---C------CceEEeehhhhh-----Hhh---hc---------------c
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---K------STFLKLAGPQLV-----QMF---IG---------------D 255 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---~------~~~i~i~~~~l~-----~~~---~g---------------~ 255 (431)
|++++.-+.|+||||+|||+++..+|... + ...+++++..-. ... .+ .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 67778889999999999999999998752 2 455666654211 000 00 0
Q ss_pred hHHHHHHHHHHH----HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q psy15151 256 GAKLVRDAFALA----KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN 325 (431)
Q Consensus 256 ~~~~~~~lf~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn 325 (431)
....+...+... ....+.+|+||-+..+......... ...+-...+.+++..+..+....++.||++..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~-~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRG-MLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCc-hHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 111111222222 2456789999999987543211110 01122234445555444443445666666653
No 327
>PRK13948 shikimate kinase; Provisional
Probab=97.62 E-value=0.00021 Score=64.62 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=34.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIG 254 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g 254 (431)
++..|+|.|.+|+|||++++.+|..++.+|+..| .++....|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 5688999999999999999999999999998665 34444444
No 328
>PHA02774 E1; Provisional
Probab=97.61 E-value=0.00022 Score=74.22 Aligned_cols=38 Identities=26% Similarity=0.567 Sum_probs=29.5
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEE-eeh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLK-LAG 245 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~-i~~ 245 (431)
|.+..+.++|+||||||||++|-+|++.++...+. +|.
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 33334689999999999999999999998655443 553
No 329
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.60 E-value=0.0004 Score=61.74 Aligned_cols=103 Identities=33% Similarity=0.432 Sum_probs=62.0
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCC---c--------eEEeeh-hhh-----hHhh----hcc-h-HHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKS---T--------FLKLAG-PQL-----VQMF----IGD-G-AKLVRDAFA 265 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~---~--------~i~i~~-~~l-----~~~~----~g~-~-~~~~~~lf~ 265 (431)
+.++..+.|.||+|+|||+|++.++..... . +.++.. ..+ .+.. ... + ....+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence 457778999999999999999999985321 0 111100 000 0000 011 1 112233455
Q ss_pred HHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 266 LAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 266 ~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
.+-...|.++++||--.- -+......+.+++..+ +..+|++|+..+
T Consensus 104 ral~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 104 RLLLHKPKFVFLDEATSA----------LDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred HHHHcCCCEEEEECCccc----------cCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 555678899999997653 2666677777877764 245777777653
No 330
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.59 E-value=0.00025 Score=66.30 Aligned_cols=109 Identities=25% Similarity=0.327 Sum_probs=62.8
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHHH---c-CCceEEeehhhhhHh--------------h--------h-------
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQ---T-KSTFLKLAGPQLVQM--------------F--------I------- 253 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~~---~-~~~~i~i~~~~l~~~--------------~--------~------- 253 (431)
=|++++..+|+.||||||||+++..++.. . +.+.+++...+-... + +
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 36778889999999999999999987653 2 677666654321110 0 0
Q ss_pred ----cchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q psy15151 254 ----GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN 325 (431)
Q Consensus 254 ----g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn 325 (431)
.........+.+.+....+.+++||-+..+.... ........+..+...+. ..++.+|+++.
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~------~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYD------DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS------SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC------CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 0122333445555566677899999999982221 12223334444544442 24455566655
No 331
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.59 E-value=0.00013 Score=66.72 Aligned_cols=33 Identities=39% Similarity=0.523 Sum_probs=23.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHH---cCCceEEeeh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAG 245 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~ 245 (431)
+.+++.||||||||++++.+... .+..++.+..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 45778899999999999998764 3445555544
No 332
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.59 E-value=0.00082 Score=61.53 Aligned_cols=74 Identities=7% Similarity=-0.004 Sum_probs=42.6
Q ss_pred eEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q psy15151 342 RKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 342 ~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~ 421 (431)
..+.+..++.+..+.-+........ .+...+..++. -..|+.+=......|...+-+.|+..+++++++.+..
T Consensus 121 ~~i~l~v~d~e~lr~Rl~~R~~~~~--~~~p~~~~~~~-----~~~ir~i~~~l~~~a~~~~i~~i~~~~~~~~~~~~~~ 193 (197)
T PRK12339 121 RAFYLYIRDAELHRSRLADRINYTH--KNSPGKRLAEH-----LPEYRTIMDYSIADARGYNIKVIDTDNYREARNPLLD 193 (197)
T ss_pred EEEEEEeCCHHHHHHHHHHHhhccc--CCCcHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHHH
Confidence 3455555666665444444433222 12223333332 2345555455556677778889999999999998765
Q ss_pred h
Q psy15151 422 K 422 (431)
Q Consensus 422 ~ 422 (431)
.
T Consensus 194 ~ 194 (197)
T PRK12339 194 P 194 (197)
T ss_pred H
Confidence 3
No 333
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.59 E-value=0.00026 Score=65.74 Aligned_cols=67 Identities=36% Similarity=0.458 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCc
Q psy15151 261 RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRL 340 (431)
Q Consensus 261 ~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~ 340 (431)
|-.+..|-.+.|.+|+-||--.- -+.+....++.++..+. ...+..||+.|. |+.+.. +.
T Consensus 150 RVAIARAL~~~P~iilADEPTgn----------LD~~t~~~V~~ll~~~~---~~~g~tii~VTH-----d~~lA~--~~ 209 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGN----------LDSKTAKEVLELLRELN---KERGKTIIMVTH-----DPELAK--YA 209 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCcccc----------CChHHHHHHHHHHHHHH---HhcCCEEEEEcC-----CHHHHH--hC
Confidence 33455556678999999995322 24455566677776653 233556777777 355666 77
Q ss_pred ceEEEcC
Q psy15151 341 DRKIEFP 347 (431)
Q Consensus 341 ~~~i~~~ 347 (431)
|++|.+.
T Consensus 210 dr~i~l~ 216 (226)
T COG1136 210 DRVIELK 216 (226)
T ss_pred CEEEEEe
Confidence 8877764
No 334
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.58 E-value=0.00018 Score=77.77 Aligned_cols=65 Identities=31% Similarity=0.352 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCc
Q psy15151 261 RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRL 340 (431)
Q Consensus 261 ~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~ 340 (431)
+-++.++--..|.||++||.-.-. |++....+.+-|..+. .+..+|..|.++..+ + +.
T Consensus 617 rlalARaLl~~P~ILlLDEaTSaL----------D~~sE~~I~~~L~~~~-----~~~T~I~IaHRl~ti-----~--~a 674 (709)
T COG2274 617 RLALARALLSKPKILLLDEATSAL----------DPETEAIILQNLLQIL-----QGRTVIIIAHRLSTI-----R--SA 674 (709)
T ss_pred HHHHHHHhccCCCEEEEeCccccc----------CHhHHHHHHHHHHHHh-----cCCeEEEEEccchHh-----h--hc
Confidence 334455555789999999986532 5666677777776653 224467777765544 3 67
Q ss_pred ceEEEcC
Q psy15151 341 DRKIEFP 347 (431)
Q Consensus 341 ~~~i~~~ 347 (431)
|+++.+.
T Consensus 675 drIiVl~ 681 (709)
T COG2274 675 DRIIVLD 681 (709)
T ss_pred cEEEEcc
Confidence 7766664
No 335
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00064 Score=68.52 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=66.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC-------Cc--eEEeehhhh-----hHhh---h------cchHHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK-------ST--FLKLAGPQL-----VQMF---I------GDGAKLVRDAFALA 267 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~-------~~--~i~i~~~~l-----~~~~---~------g~~~~~~~~lf~~a 267 (431)
.|..++|+||+|+|||+++..+|..+. .. ++.+|+... ...| . ......+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 356799999999999999999987542 23 444444211 1111 1 11222333333333
Q ss_pred HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCC-CCeEEEEEeCCCCCCChhhhcCCCc-ceEEE
Q psy15151 268 KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSST-ADIKVIAATNRVDILDPALLRSGRL-DRKIE 345 (431)
Q Consensus 268 ~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~-~~v~vI~ttn~~~~l~~~l~r~gR~-~~~i~ 345 (431)
....+|+||.+..+.. +......+..+++. .... ..++|+-+|.....+...+.+-..+ ...+.
T Consensus 253 --~~~DlVLIDTaGr~~~---------~~~~l~el~~~l~~---~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I 318 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK---------DFMKLAEMKELLNA---CGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVI 318 (388)
T ss_pred --CCCCEEEEcCCCCCcc---------CHHHHHHHHHHHHh---cCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 4567999999988621 22112233344433 2223 2344455555444454333321111 12555
Q ss_pred cCCCCHHHHHH
Q psy15151 346 FPHPNEEARAR 356 (431)
Q Consensus 346 ~~~p~~~~r~~ 356 (431)
|.-.|...+.-
T Consensus 319 ~TKlDet~~~G 329 (388)
T PRK12723 319 FTKLDETTCVG 329 (388)
T ss_pred EEeccCCCcch
Confidence 66666654443
No 336
>PRK04040 adenylate kinase; Provisional
Probab=97.56 E-value=0.00058 Score=62.05 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
+..++++|+||||||++++.+++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35689999999999999999999983
No 337
>PRK13695 putative NTPase; Provisional
Probab=97.55 E-value=0.0012 Score=59.03 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.2
Q ss_pred CceeeCCCCCchHHHHHHHHHHc
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~ 236 (431)
.++|.|++|+|||++++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988764
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.55 E-value=0.00043 Score=62.28 Aligned_cols=106 Identities=21% Similarity=0.208 Sum_probs=62.3
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehhh--hhHhhhcch-HHHHHHHHHHHHhCCCeEEEEccccccc
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGPQ--LVQMFIGDG-AKLVRDAFALAKEKAPAIIFIDELDAIG 284 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~~--l~~~~~g~~-~~~~~~lf~~a~~~~p~vl~iDEid~l~ 284 (431)
.++..+.|.||+|+|||+|++.++..... --+.++... +......-+ ....+-.+..+-...|.++++||--.-
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~- 101 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAY- 101 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCccc-
Confidence 46678899999999999999999985321 112222211 000000011 112233445555677899999997653
Q ss_pred cCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 285 TKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 285 ~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
-+......+..++..+.. ..+..+|++|...+
T Consensus 102 ---------LD~~~~~~l~~~l~~~~~---~~~~tiiivsH~~~ 133 (177)
T cd03222 102 ---------LDIEQRLNAARAIRRLSE---EGKKTALVVEHDLA 133 (177)
T ss_pred ---------CCHHHHHHHHHHHHHHHH---cCCCEEEEEECCHH
Confidence 266666777777766421 22245677777543
No 339
>KOG3928|consensus
Probab=97.55 E-value=0.0024 Score=63.37 Aligned_cols=50 Identities=12% Similarity=0.097 Sum_probs=34.9
Q ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCCC----CCCHHHHHHHcCCCCHHHHHHHHH
Q psy15151 343 KIEFPHPNEEARARIMQIHSRKMNVSP----DVNYEELSRSTDDFNGAQCKAVCV 393 (431)
Q Consensus 343 ~i~~~~p~~~~r~~Il~~~l~~~~~~~----~~~~~~la~~~~g~s~~di~~l~~ 393 (431)
.|+++.++.+|-..++..+++.--+.. +....++--.+ +.+|+.++.+|.
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 588899999999999998876533332 22344554444 678888888774
No 340
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.55 E-value=0.00012 Score=72.88 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=45.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCC----ceEEee-hhhhhH---------hhhcchHHHHHHHHHHHHhCCCeEEE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKS----TFLKLA-GPQLVQ---------MFIGDGAKLVRDAFALAKEKAPAIIF 276 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~----~~i~i~-~~~l~~---------~~~g~~~~~~~~lf~~a~~~~p~vl~ 276 (431)
+...+++.||+|+|||++++++...... .++.+. ..++.. .-+|.........+..+.+..|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 4467899999999999999999886542 233331 122211 11232222345566667778899999
Q ss_pred Ecccc
Q psy15151 277 IDELD 281 (431)
Q Consensus 277 iDEid 281 (431)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99984
No 341
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.52 E-value=0.00046 Score=63.36 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~ 234 (431)
++..++|+||.|+|||++.+.++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 446799999999999999999994
No 342
>PRK06762 hypothetical protein; Provisional
Probab=97.52 E-value=0.00033 Score=62.03 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=32.2
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~ 252 (431)
.-++|+|+||+|||++|+.++..++..++.++...+...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l 42 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM 42 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh
Confidence 4688999999999999999999986667777766655433
No 343
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.51 E-value=0.00054 Score=61.20 Aligned_cols=106 Identities=21% Similarity=0.202 Sum_probs=59.6
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH-----hh------------hcchHHHHHHHHHHHHhCCCeEEE
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ-----MF------------IGDGAKLVRDAFALAKEKAPAIIF 276 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~-----~~------------~g~~~~~~~~lf~~a~~~~p~vl~ 276 (431)
.+|+.||||+|||++|..++...+.+.+++....... .. .-+.+..+..++... ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 4899999999999999999999887777766543211 10 001111233333321 13356899
Q ss_pred EccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 277 IDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 277 iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
||-+..+......... .......+..+++.+.. .+..+|+++|.
T Consensus 82 ID~Lt~~~~n~l~~~~--~~~~~~~l~~li~~L~~----~~~tvVlVs~E 125 (170)
T PRK05800 82 VDCLTTWVTNLLFEEG--EEAIAAEIDALLAALQQ----LPAKIILVTNE 125 (170)
T ss_pred ehhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHc----CCCCEEEEEcC
Confidence 9999887543321100 12233445556665543 22335666663
No 344
>PRK10536 hypothetical protein; Provisional
Probab=97.51 E-value=0.0011 Score=62.77 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=35.9
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
...+..|.+.......+..++.. ..-+++.||+|||||+||.+++.+
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~al~~---------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKAIES---------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred hcCCccccCCCHHHHHHHHHHhc---------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 45566677777777777665542 246899999999999999999884
No 345
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.51 E-value=0.00064 Score=56.96 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=20.4
Q ss_pred CCceeeCCCCCchHHHHHHHHHHc
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~ 236 (431)
++++++||+|+|||+++-.++...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999988887754
No 346
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.00049 Score=63.92 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=36.6
Q ss_pred HHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 262 DAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 262 ~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
-.+..|-...|.+|++||.-..+ +..+|..++.+|..+.. ..+..+|+.|...
T Consensus 150 iaIARAL~~~PklLIlDEptSaL----------D~siQa~IlnlL~~l~~---~~~lt~l~IsHdl 202 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTSAL----------DVSVQAQILNLLLELKK---ERGLTYLFISHDL 202 (252)
T ss_pred HHHHHHhccCCCEEEecCchhhh----------cHHHHHHHHHHHHHHHH---hcCceEEEEeCcH
Confidence 34555556679999999976643 66788888888877642 3455577777643
No 347
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.50 E-value=0.00047 Score=66.24 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=29.5
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc----CCceEEeeh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAG 245 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~ 245 (431)
|+.++..++|.||||+|||+++..++... +..++.++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 56677889999999999999999887652 555555544
No 348
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.49 E-value=0.00065 Score=60.61 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=60.5
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh----h-------------hcchHHHHHHHHHHHHhCCCeEEEE
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM----F-------------IGDGAKLVRDAFALAKEKAPAIIFI 277 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~----~-------------~g~~~~~~~~lf~~a~~~~p~vl~i 277 (431)
+|++|++|+|||++|..++...+.+.+++....-... . ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999887777777655422110 0 012233333333222 14669999
Q ss_pred ccccccccCCCCCCCcC-cHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 278 DELDAIGTKRFDSEKAG-DREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 278 DEid~l~~~r~~~~~~~-~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
|-+..+...-...+... ...+...+..+++.+.. .++.+|+++|.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~----~~~~~viVsnE 125 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN----KPGTLILVSNE 125 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc----CCCcEEEEECC
Confidence 99988765442211100 12233445556665543 23345666773
No 349
>PRK05973 replicative DNA helicase; Provisional
Probab=97.48 E-value=0.00079 Score=63.25 Aligned_cols=38 Identities=34% Similarity=0.368 Sum_probs=29.9
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeeh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAG 245 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~ 245 (431)
|++++..+++.|+||+|||+++-.++.. .|.+.++++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 6778888999999999999999887764 3556555544
No 350
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.48 E-value=0.00092 Score=60.03 Aligned_cols=106 Identities=21% Similarity=0.225 Sum_probs=63.8
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehhhhh------Hh---h----------------hcc-h-HHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGPQLV------QM---F----------------IGD-G-AKL 259 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~~l~------~~---~----------------~g~-~-~~~ 259 (431)
+.++..+.|.||+|+|||+|++.++..... --+.++...+. .. | ... + ...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~ 104 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER 104 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence 457788999999999999999999985321 11222221110 00 0 000 0 111
Q ss_pred HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 260 VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 260 ~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
.+-.+..+-...|.++++||--.- -+......+.+++..+. . +..+|++|+.++.
T Consensus 105 qrv~laral~~~p~~lllDEP~~~----------LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~ 159 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVG----------LDPITERQLLSLIFEVL----K-DKTLIWITHHLTG 159 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCccc----------CCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHH
Confidence 233445555678899999997653 26666777888887652 2 3457777775543
No 351
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.48 E-value=0.00099 Score=63.73 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=28.7
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEee
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLA 244 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~ 244 (431)
|++++..++++||||||||++|-.++.. .+.+.++++
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 6678888999999999999999988663 344555554
No 352
>PRK10867 signal recognition particle protein; Provisional
Probab=97.48 E-value=0.0044 Score=63.39 Aligned_cols=195 Identities=16% Similarity=0.213 Sum_probs=99.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc----CCceEEeehhhhhH----------hh-----h-----cchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAGPQLVQ----------MF-----I-----GDGAKLVRDAFAL 266 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~~~l~~----------~~-----~-----g~~~~~~~~lf~~ 266 (431)
+|..++|.||+|+|||+++..+|..+ +..+..+++..+-. .. + ..+........+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 46789999999999999888777642 55555555532110 00 1 1223333455666
Q ss_pred HHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC-CCCC--hhhhcCCCcceE
Q psy15151 267 AKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV-DILD--PALLRSGRLDRK 343 (431)
Q Consensus 267 a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~-~~l~--~~l~r~gR~~~~ 343 (431)
++...+.+|++|=...+.. +......+..+.+. ..+..+++|+.+... +.++ ..+...-.++ -
T Consensus 179 a~~~~~DvVIIDTaGrl~~---------d~~lm~eL~~i~~~----v~p~evllVlda~~gq~av~~a~~F~~~~~i~-g 244 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHI---------DEELMDELKAIKAA----VNPDEILLVVDAMTGQDAVNTAKAFNEALGLT-G 244 (433)
T ss_pred HHhcCCCEEEEeCCCCccc---------CHHHHHHHHHHHHh----hCCCeEEEEEecccHHHHHHHHHHHHhhCCCC-E
Confidence 6667788999999876521 22222333333332 233344444433221 1111 1223211222 3
Q ss_pred EEcCCCCHHHHHHHHHHHHh--cCCC---------C--CCCCHHHHHHHcCCCCHHHHHHHHHHHHHH---------HHH
Q psy15151 344 IEFPHPNEEARARIMQIHSR--KMNV---------S--PDVNYEELSRSTDDFNGAQCKAVCVEAGMI---------ALR 401 (431)
Q Consensus 344 i~~~~p~~~~r~~Il~~~l~--~~~~---------~--~~~~~~~la~~~~g~s~~di~~l~~~A~~~---------A~~ 401 (431)
+.+...|...+.-.+-.... +.++ + ...+.+.++.+.-|. +|+..++..|... +.+
T Consensus 245 iIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgm--gD~~~l~e~~~~~~~~~~~~~~~~~ 322 (433)
T PRK10867 245 VILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGM--GDVLSLIEKAQEVVDEEKAEKLAKK 322 (433)
T ss_pred EEEeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCC--CChHHHHHHHHHhhCHHHHHHHHHH
Confidence 44455554443322221111 1111 1 234466777777544 4677776654432 111
Q ss_pred hCCCCcCHHHHHHHHHHHHH
Q psy15151 402 RGAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 402 ~~~~~It~ed~~~Al~~~~~ 421 (431)
-.....|.+||..-++.++.
T Consensus 323 ~~~g~f~l~d~~~q~~~~~k 342 (433)
T PRK10867 323 LKKGKFDLEDFLEQLQQMKK 342 (433)
T ss_pred HHhCCCCHHHHHHHHHHHHh
Confidence 12346899999988887764
No 353
>PRK13947 shikimate kinase; Provisional
Probab=97.48 E-value=9.7e-05 Score=65.74 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=28.9
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeeh
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAG 245 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~ 245 (431)
+|+|.|+||||||++++.+|+.++.+|+..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 58999999999999999999999999876553
No 354
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.47 E-value=0.00072 Score=64.87 Aligned_cols=93 Identities=14% Similarity=0.247 Sum_probs=57.8
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC---ceEEee-hhhhhHh
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS---TFLKLA-GPQLVQM 251 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~---~~i~i~-~~~l~~~ 251 (431)
.+.+++-..++++.+...+.. +...++|.||+|+|||++++++...... .++.+. ..++.-.
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 456666566666666555442 3356899999999999999999776532 344432 2222110
Q ss_pred -----hhc-chHHHHHHHHHHHHhCCCeEEEEccccc
Q psy15151 252 -----FIG-DGAKLVRDAFALAKEKAPAIIFIDELDA 282 (431)
Q Consensus 252 -----~~g-~~~~~~~~lf~~a~~~~p~vl~iDEid~ 282 (431)
.+. ........+...+.+..|.+|+++|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 011 1112345566677778899999999964
No 355
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.47 E-value=0.00048 Score=64.89 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=30.8
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc----CCceEEeeh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAG 245 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~ 245 (431)
|+.++.-++|.|+||+|||+++..++... +.+++++++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 77788889999999999999999887642 667666653
No 356
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.46 E-value=0.00091 Score=61.32 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.4
Q ss_pred CC-CCceeeCCCCCchHHHHHHHH
Q psy15151 211 PP-KGVLLYGPPGTGKTLLARACA 233 (431)
Q Consensus 211 ~~-~~vLl~GppGtGKT~lakala 233 (431)
++ +.++|+||.|+|||++.+.++
T Consensus 26 ~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 26 ENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CCceEEEEECCCCCChHHHHHHHH
Confidence 44 359999999999999999998
No 357
>PRK03839 putative kinase; Provisional
Probab=97.46 E-value=9.5e-05 Score=66.54 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=27.7
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3889999999999999999999998886654
No 358
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.00087 Score=59.81 Aligned_cols=107 Identities=27% Similarity=0.375 Sum_probs=63.7
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCCc--eEEeehhhhh-------Hh----------hhc-------ch-HHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKST--FLKLAGPQLV-------QM----------FIG-------DG-AKLVR 261 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~~--~i~i~~~~l~-------~~----------~~g-------~~-~~~~~ 261 (431)
+.++..+.|.||+|+|||+|.+.++...... -+.+++..+. .. ++. -+ ....+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 3577889999999999999999999853210 1222221100 00 000 01 11122
Q ss_pred HHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 262 DAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 262 ~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
-.+..+-...|.++++||--.- -+......+.+++..+. . +..+|++|+.++.+
T Consensus 105 l~la~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 158 (171)
T cd03228 105 IAIARALLRDPPILILDEATSA----------LDPETEALILEALRALA----K-GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHhc----C-CCEEEEEecCHHHH
Confidence 3345555578899999997642 25566677777777653 1 25677888865544
No 359
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.45 E-value=0.00076 Score=62.57 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=56.8
Q ss_pred CCceeeCCCCCchHHHHHHHHH-----HcCCceE--------------EeehhhhhHhhhcchHHHHHHHH-HHHHhCCC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAA-----QTKSTFL--------------KLAGPQLVQMFIGDGAKLVRDAF-ALAKEKAP 272 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~-----~~~~~~i--------------~i~~~~l~~~~~g~~~~~~~~lf-~~a~~~~p 272 (431)
+.++|+||.|+|||++.|.++. ..|.... .++..+-+..........++.+. ..+....+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 6799999999999999999983 2333221 11111111111111122222222 22233568
Q ss_pred eEEEEccccccccCCCCCCCcCcH-HHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCCh
Q psy15151 273 AIIFIDELDAIGTKRFDSEKAGDR-EVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDP 332 (431)
Q Consensus 273 ~vl~iDEid~l~~~r~~~~~~~~~-~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~ 332 (431)
++++|||+..-. ++ +....+..++..+.. ....+..+|++|...+....
T Consensus 110 slvllDE~~~gt----------d~~~~~~~~~ail~~l~~-~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 110 SLVLIDEFGKGT----------DTEDGAGLLIATIEHLLK-RGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred cEEEeccccCCC----------CHHHHHHHHHHHHHHHHh-cCCCCcEEEEEcChHHHHHh
Confidence 999999987631 22 233444455555422 11234467888876655433
No 360
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.45 E-value=0.00011 Score=63.89 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=31.2
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhc
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIG 254 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g 254 (431)
+|+|+|+||+|||++|+.+|..++.+++..+ .+.....|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHcC
Confidence 4789999999999999999999998877554 44444444
No 361
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.45 E-value=0.0004 Score=70.95 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=62.4
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEee----hhhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLA----GPQLV 249 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~----~~~l~ 249 (431)
...+++++........+...+.. |.+-+|+.||+|+|||++..++.+.++.+...+- .-++.
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~ 299 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ 299 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee
Confidence 45678888888888888877763 4456888999999999999999998765544221 11111
Q ss_pred Hh-----hhcch-HHHHHHHHHHHHhCCCeEEEEccccc
Q psy15151 250 QM-----FIGDG-AKLVRDAFALAKEKAPAIIFIDELDA 282 (431)
Q Consensus 250 ~~-----~~g~~-~~~~~~lf~~a~~~~p~vl~iDEid~ 282 (431)
-. .+... .-.....+....+..|.||++.||-.
T Consensus 300 ~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 300 LPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred cCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 11 11110 00123345566678899999999964
No 362
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.44 E-value=0.00057 Score=67.13 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=64.3
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---------cCCceEEeehhhh---------hHhhhcc--------------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---------TKSTFLKLAGPQL---------VQMFIGD-------------- 255 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---------~~~~~i~i~~~~l---------~~~~~g~-------------- 255 (431)
|++.+.-+.|+||||+|||.++..+|-. .+...++++..+- ...+ |.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~-g~d~~~~l~~i~~~~~ 170 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERF-GVDPDAVLDNILYARA 170 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHc-CCChHHhcCcEEEecC
Confidence 6777788899999999999999987742 2346677765431 1111 11
Q ss_pred --hH---HHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q psy15151 256 --GA---KLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT 324 (431)
Q Consensus 256 --~~---~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt 324 (431)
.+ ..+..+........+.+|+||-|-.+....... .+.-.+-+..+.+++..+..+....++.||+|.
T Consensus 171 ~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 171 YTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 11 111222223344568899999999886542211 111122233355555544444445566666653
No 363
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.44 E-value=0.00065 Score=68.15 Aligned_cols=115 Identities=16% Similarity=0.226 Sum_probs=63.0
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcCCc------eEEeeh------hhhhHhh--------hcchHHH-H---HHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTKST------FLKLAG------PQLVQMF--------IGDGAKL-V---RDAFA 265 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~~~------~i~i~~------~~l~~~~--------~g~~~~~-~---~~lf~ 265 (431)
..+..++|.||||+|||++++.+++..... ++.+.. .++.... ++.++.. + ..+.+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 366779999999999999999999974322 222221 1122211 2222222 1 12222
Q ss_pred HH----HhCCCeEEEEccccccccCCCC--------CCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q psy15151 266 LA----KEKAPAIIFIDELDAIGTKRFD--------SEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT 324 (431)
Q Consensus 266 ~a----~~~~p~vl~iDEid~l~~~r~~--------~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt 324 (431)
.+ ..+...||||||+++++..... ...+-++.+...+-.++.........+.+.+|+|.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G~~~s~G~~~~~~~~~~~~~~~a~~~~~~GSiT~~~Tv 316 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 316 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcCCCCCCCcChhhhcccHHHHhhcCCCCCCcchhheEEE
Confidence 22 2345679999999987532110 11334555555556666554444345556666654
No 364
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.44 E-value=0.0013 Score=61.40 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=62.3
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhHh--------------hhcc-------hH------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQM--------------FIGD-------GA------ 257 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~~--------------~~g~-------~~------ 257 (431)
|++++..+++.|+||+|||+++..++.. .+.+.++++..+-... +.+. ..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 6778888999999999999999988753 3556666655322111 0000 00
Q ss_pred --HHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 258 --KLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 258 --~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
.....+...+....+..++||-+..+-.. ...+.+....+..++..+. ..++.++++++.
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-----~~~~~~~r~~l~~l~~~lk----~~~~tvll~s~~ 153 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-----FDDDAERRTELFRFYSSLR----ETGVTTILTSEA 153 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-----cCCHHHHHHHHHHHHHHHH----hCCCEEEEEEcc
Confidence 11112223344556788999998876211 0113334455566666653 234556666653
No 365
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00079 Score=59.08 Aligned_cols=107 Identities=30% Similarity=0.363 Sum_probs=63.6
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCCc--eEEeehhhhh-------Hhhhc----chHH-HHHHHHHHHHhCCCeE
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKST--FLKLAGPQLV-------QMFIG----DGAK-LVRDAFALAKEKAPAI 274 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~~--~i~i~~~~l~-------~~~~g----~~~~-~~~~lf~~a~~~~p~v 274 (431)
+.++..+.|.||+|+|||+|+++++...... -+.++..... ...++ -+.+ ..+-.+..+-...|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 3466789999999999999999999864321 2233332111 11111 1111 2223344555566889
Q ss_pred EEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 275 IFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 275 l~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
+++||...- -+......+.+++..+.. . +..+|++|+..+.
T Consensus 102 ~ilDEp~~~----------lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~ 142 (157)
T cd00267 102 LLLDEPTSG----------LDPASRERLLELLRELAE---E-GRTVIIVTHDPEL 142 (157)
T ss_pred EEEeCCCcC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHH
Confidence 999998753 255556677777766432 2 3457777775443
No 366
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00041 Score=61.48 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=29.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeeh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG 245 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~ 245 (431)
.+++|.|++|+|||++.+++|+.++.+|+-.|.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 579999999999999999999999999976653
No 367
>PRK00625 shikimate kinase; Provisional
Probab=97.43 E-value=0.00011 Score=65.77 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=28.2
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
.|+|.|.||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999998887665
No 368
>KOG3347|consensus
Probab=97.42 E-value=0.00011 Score=62.86 Aligned_cols=31 Identities=35% Similarity=0.644 Sum_probs=27.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
.+||++|-||||||+++..+|..++.+++.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 5799999999999999999999988877655
No 369
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.42 E-value=0.00013 Score=65.52 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=31.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
++-++|.|+||+|||++|+.++..++.+++.++...+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~ 39 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI 39 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHH
Confidence 35689999999999999999999988888776655443
No 370
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.42 E-value=0.001 Score=59.51 Aligned_cols=105 Identities=25% Similarity=0.391 Sum_probs=63.1
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehhhh--------hHh--h-------hc--------chHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGPQL--------VQM--F-------IG--------DGAKLVRD 262 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~~l--------~~~--~-------~g--------~~~~~~~~ 262 (431)
.++..+.|.||+|+|||+|++.++..... --+.++...+ ... + +. ......+-
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHH
Confidence 46677999999999999999999985321 0122221110 000 0 00 01112334
Q ss_pred HHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 263 AFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 263 lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
.+..+-...|.++++||--.- -+......+.+++..+.. .+..+|++|+..+
T Consensus 106 ~la~al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~ 157 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSH----------LDVEGERALNQAIAALKA----AGATRIVIAHRPE 157 (173)
T ss_pred HHHHHHhcCCCEEEEECCccc----------cCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 455666678999999997643 266667778888876532 2345777777543
No 371
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.42 E-value=0.00071 Score=60.91 Aligned_cols=108 Identities=26% Similarity=0.334 Sum_probs=63.4
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehhhh--------h-------------------Hhhhcc-h-H
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGPQL--------V-------------------QMFIGD-G-A 257 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~~l--------~-------------------~~~~g~-~-~ 257 (431)
+.++..+.|.||+|+|||+|++.++..... --+.+++..+ . ...... + .
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 457778999999999999999999985321 1122222110 0 000000 1 1
Q ss_pred HHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 258 KLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 258 ~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
...+-.+..+-...|.++++||--.- -+......+.+++..+.. ..+..+|++|+.++.
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~----------LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~ 160 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSH----------LDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 11223345555577899999997642 255666777777776532 113457777776543
No 372
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.41 E-value=0.00031 Score=68.60 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=47.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC-----CceEEee-hhhhhH-------hhhcchHHHHHHHHHHHHhCCCeEEEE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK-----STFLKLA-GPQLVQ-------MFIGDGAKLVRDAFALAKEKAPAIIFI 277 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~-----~~~i~i~-~~~l~~-------~~~g~~~~~~~~lf~~a~~~~p~vl~i 277 (431)
..+++++.||+|+|||++++++..... ..++.+. ..++.- -..+........++..+.+..|..|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 447899999999999999999998752 2233332 112210 001112224567778888889999999
Q ss_pred ccccc
Q psy15151 278 DELDA 282 (431)
Q Consensus 278 DEid~ 282 (431)
.|+-.
T Consensus 211 GEiR~ 215 (299)
T TIGR02782 211 GEVRG 215 (299)
T ss_pred eccCC
Confidence 99853
No 373
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00071 Score=67.74 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.0
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
..+..++|.||+|+|||+++..||..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35578999999999999999999975
No 374
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.40 E-value=0.00065 Score=73.68 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=65.1
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHH---HcCCceEEeehhhhhH----hhhcc------------hHHHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAA---QTKSTFLKLAGPQLVQ----MFIGD------------GAKLVRDAFALAK 268 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~---~~~~~~i~i~~~~l~~----~~~g~------------~~~~~~~lf~~a~ 268 (431)
|++++..++++||||||||+|+-.++. ..+...++++..+-.. .-+|- .+..+..+-..++
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 566778899999999999999976544 3455666666543222 00111 1222222223345
Q ss_pred hCCCeEEEEccccccccCCCCCCCc--CcHHHH-HHHHHHHHhhcCCCCCCCeEEEEEe
Q psy15151 269 EKAPAIIFIDELDAIGTKRFDSEKA--GDREVQ-RTMLELLNQLDGFSSTADIKVIAAT 324 (431)
Q Consensus 269 ~~~p~vl~iDEid~l~~~r~~~~~~--~~~~~~-~~l~~lL~~~~~~~~~~~v~vI~tt 324 (431)
...+.+|+||-+..+.....-.+.. .....+ +.+.++|..+.......++.+|+|-
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5678999999999998522111111 112223 2234555544433344566666663
No 375
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00081 Score=60.12 Aligned_cols=106 Identities=24% Similarity=0.311 Sum_probs=63.1
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehhhh-------h----------Hhhhc--------ch-HHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGPQL-------V----------QMFIG--------DG-AKLV 260 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~~l-------~----------~~~~g--------~~-~~~~ 260 (431)
+.++..+.|.||+|+|||+|++.++..... --+.++...+ . .-+.+ -+ ....
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~q 102 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQ 102 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHH
Confidence 346678999999999999999999985321 0111111100 0 00001 01 1112
Q ss_pred HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 261 RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 261 ~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
+-.+..+-...|.++++||-..- -+......+.+++..+.. . +..+|++|+.++
T Consensus 103 rv~laral~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~~~~---~-g~tiii~th~~~ 156 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSG----------LDPESRREFWELLRELKK---E-GKTILLSSHILE 156 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEECCCHH
Confidence 33455666678999999997653 266677788888877532 2 345677776543
No 376
>PRK04328 hypothetical protein; Provisional
Probab=97.38 E-value=0.0021 Score=61.15 Aligned_cols=38 Identities=32% Similarity=0.389 Sum_probs=28.8
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeeh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAG 245 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~ 245 (431)
|++++..+|++||||||||+|+-.++.. .+.+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 6778889999999999999998876653 3445555543
No 377
>PRK13949 shikimate kinase; Provisional
Probab=97.36 E-value=0.00015 Score=64.82 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=29.1
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
..|+|.||||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35899999999999999999999998887766
No 378
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.36 E-value=0.00015 Score=65.19 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=28.3
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~ 251 (431)
+++.||||+|||++|+.+|...+. ..+++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHH
Confidence 689999999999999999999875 45555555543
No 379
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.36 E-value=0.00077 Score=61.05 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=53.4
Q ss_pred ceeeCCCCCchHHHHHHHHH-----HcCCce--------------EEeehhhhhHhhhcchHHHHHHHHHHHHh-CCCeE
Q psy15151 215 VLLYGPPGTGKTLLARACAA-----QTKSTF--------------LKLAGPQLVQMFIGDGAKLVRDAFALAKE-KAPAI 274 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~-----~~~~~~--------------i~i~~~~l~~~~~g~~~~~~~~lf~~a~~-~~p~v 274 (431)
++|+||.|+|||++.|.++- +.|.+. ..+...+......+.....++++...+.. ..|.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 233211 12222222222222222333333322222 36899
Q ss_pred EEEccccccccCCCCCCCcCcHHH-HHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 275 IFIDELDAIGTKRFDSEKAGDREV-QRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 275 l~iDEid~l~~~r~~~~~~~~~~~-~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
+++||+..-. ++.. ...+..++..+.. ..+..+|++|+..+
T Consensus 82 lllDEp~~g~----------d~~~~~~~~~~~l~~l~~---~~~~~iii~TH~~~ 123 (185)
T smart00534 82 VLLDELGRGT----------STYDGVAIAAAVLEYLLE---KIGALTLFATHYHE 123 (185)
T ss_pred EEEecCCCCC----------CHHHHHHHHHHHHHHHHh---cCCCeEEEEecHHH
Confidence 9999987631 3332 2233344544321 12445777887654
No 380
>PRK14532 adenylate kinase; Provisional
Probab=97.36 E-value=0.00015 Score=65.72 Aligned_cols=37 Identities=22% Similarity=0.440 Sum_probs=29.5
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~ 252 (431)
.++|.||||+|||++|+.+|+..+..+ +++.+++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHHH
Confidence 489999999999999999999988655 4555555543
No 381
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.35 E-value=0.00059 Score=68.45 Aligned_cols=70 Identities=26% Similarity=0.378 Sum_probs=46.2
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcC-----CceEEeehh-hhh-----------HhhhcchHHHHHHHHHHHHhCCCeEE
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTK-----STFLKLAGP-QLV-----------QMFIGDGAKLVRDAFALAKEKAPAII 275 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~-----~~~i~i~~~-~l~-----------~~~~g~~~~~~~~lf~~a~~~~p~vl 275 (431)
..+|+.||+|+|||++++++..... ..++.+.-+ ++. +.-+|............+.+..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 5689999999999999999988652 234444221 221 11123222234556667777899999
Q ss_pred EEccccc
Q psy15151 276 FIDELDA 282 (431)
Q Consensus 276 ~iDEid~ 282 (431)
++.|+-.
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999854
No 382
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.35 E-value=0.00017 Score=69.32 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=45.0
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCc---eEEee-hhhhhHh------hh-cchHHHHHHHHHHHHhCCCeEEEEcc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKST---FLKLA-GPQLVQM------FI-GDGAKLVRDAFALAKEKAPAIIFIDE 279 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~---~i~i~-~~~l~~~------~~-g~~~~~~~~lf~~a~~~~p~vl~iDE 279 (431)
..+.+++.||+|+|||++++++....... ++.+. ..++.-. +. .........++..+.+..|.+|+++|
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigE 205 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGE 205 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESC
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccc
Confidence 35789999999999999999999875433 33332 2222111 00 11223355677778888899999999
Q ss_pred ccc
Q psy15151 280 LDA 282 (431)
Q Consensus 280 id~ 282 (431)
+-.
T Consensus 206 iR~ 208 (270)
T PF00437_consen 206 IRD 208 (270)
T ss_dssp E-S
T ss_pred cCC
Confidence 965
No 383
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.35 E-value=0.00041 Score=65.69 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.2
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++.+.-+-|.||.|||||||.|+++.-
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 345667889999999999999999983
No 384
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.35 E-value=0.00098 Score=60.98 Aligned_cols=102 Identities=24% Similarity=0.416 Sum_probs=58.0
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc---CCc--eEEeehhhh-----hHh---hhc----------chHHHHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT---KST--FLKLAGPQL-----VQM---FIG----------DGAKLVRDAFALAK 268 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~---~~~--~i~i~~~~l-----~~~---~~g----------~~~~~~~~lf~~a~ 268 (431)
|+-++|.||+|+|||+.+--+|..+ +.. ++..+.... +.. .+| .........++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4568999999999999988888753 332 333333211 111 111 12233455666666
Q ss_pred hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 269 EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 269 ~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
.....+||||=..... .+.+....+..+++.+ .+..+.+++.++.
T Consensus 81 ~~~~D~vlIDT~Gr~~---------~d~~~~~el~~~~~~~----~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP---------RDEELLEELKKLLEAL----NPDEVHLVLSATM 125 (196)
T ss_dssp HTTSSEEEEEE-SSSS---------THHHHHHHHHHHHHHH----SSSEEEEEEEGGG
T ss_pred hcCCCEEEEecCCcch---------hhHHHHHHHHHHhhhc----CCccceEEEeccc
Confidence 6666799999976531 1334445565666654 3445666666553
No 385
>PTZ00202 tuzin; Provisional
Probab=97.34 E-value=0.0068 Score=61.39 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=47.1
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehh
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP 246 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~ 246 (431)
...+++|.+....++...+... ....+.-+.|.||+|||||++++.+....+.+.+.+|..
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~----------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRL----------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhcc----------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 3568899999999998776521 112345678999999999999999999888776666654
No 386
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.34 E-value=0.00077 Score=66.88 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=64.9
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---------CCceEEeehhhh------hHh--hhcch--------------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---------KSTFLKLAGPQL------VQM--FIGDG-------------- 256 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---------~~~~i~i~~~~l------~~~--~~g~~-------------- 256 (431)
|++.+.-..|+||||||||.|+..+|-.. +...++++...- ... -+|..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 67777888999999999999999887421 245677766331 110 01111
Q ss_pred --H---HHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q psy15151 257 --A---KLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT 324 (431)
Q Consensus 257 --~---~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt 324 (431)
. ..+..+.......++.+|+||-|-.+........ +...+-+..|.+++..+.......++.||+|.
T Consensus 202 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~r-g~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 202 TYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGR-GELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 1 1112222334446688999999998865432211 11123344455655554443344566666654
No 387
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.34 E-value=0.002 Score=64.18 Aligned_cols=114 Identities=16% Similarity=0.249 Sum_probs=63.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCC-----ceEE--ee-----hhhhhHhh---hc-----chH-HHHH---HHHH-
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKS-----TFLK--LA-----GPQLVQMF---IG-----DGA-KLVR---DAFA- 265 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~-----~~i~--i~-----~~~l~~~~---~g-----~~~-~~~~---~lf~- 265 (431)
.+...+|.||||||||++++.+++.... .++. |. ..++.... ++ ++. ..++ .+.+
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 4467899999999999999999986533 1222 21 12222221 11 111 1111 1112
Q ss_pred ---HHHhCCCeEEEEccccccccCCCC--------CCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q psy15151 266 ---LAKEKAPAIIFIDELDAIGTKRFD--------SEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT 324 (431)
Q Consensus 266 ---~a~~~~p~vl~iDEid~l~~~r~~--------~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt 324 (431)
....+...+|++|++.+++..... ...+-++.+...+-.++..-......+.+.+|+|.
T Consensus 212 Ae~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~s~~~~~~rl~~~A~~~~~~GSiT~i~Tv 281 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARALQRPKRLFGAARNIEEGGSLTIIATA 281 (380)
T ss_pred HHHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcChHHHhhhHHHHHhcCCCCCCcchhheEEE
Confidence 223355679999999987542111 11345666667777777765544444556566554
No 388
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.33 E-value=0.00038 Score=63.48 Aligned_cols=139 Identities=20% Similarity=0.229 Sum_probs=60.7
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCc
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKA 293 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~ 293 (431)
-++|+||+|||||.+|=++|+.++.|++..|.-.......-.+.+.... .. ..-+ =++|||-..- .
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~---el-~~~~-RiyL~~r~l~---------~ 68 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPS---EL-KGTR-RIYLDDRPLS---------D 68 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SG---GG-TT-E-EEES----GG---------G
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHH---HH-cccc-eeeecccccc---------C
Confidence 3689999999999999999999999999998766555432222211100 01 1112 3788864432 1
Q ss_pred CcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhc---CCCcc-eEEEcCCCCHHHHHHHHHHHHhcCCCC
Q psy15151 294 GDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLR---SGRLD-RKIEFPHPNEEARARIMQIHSRKMNVS 368 (431)
Q Consensus 294 ~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r---~gR~~-~~i~~~~p~~~~r~~Il~~~l~~~~~~ 368 (431)
+.-........+++.++.....+.+ |+-.-..+.+..-..+ ...|. .+..++.|+.+.-..-.+.+.+++...
T Consensus 69 G~i~a~ea~~~Li~~v~~~~~~~~~--IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p 145 (233)
T PF01745_consen 69 GIINAEEAHERLISEVNSYSAHGGL--ILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRP 145 (233)
T ss_dssp -S--HHHHHHHHHHHHHTTTTSSEE--EEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS-
T ss_pred CCcCHHHHHHHHHHHHHhccccCce--EEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCC
Confidence 1222223444455555555553333 3332222221111111 01222 366677888877666555555554433
No 389
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.32 E-value=0.00056 Score=67.73 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=47.8
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEe-ehhhhhH-----------hh--hcchHHHHHHHHHHHHhCCCeE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKL-AGPQLVQ-----------MF--IGDGAKLVRDAFALAKEKAPAI 274 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i-~~~~l~~-----------~~--~g~~~~~~~~lf~~a~~~~p~v 274 (431)
...++++.|++|+|||++++++...... .++.+ +..++.- .. .|...-....++..+.+..|.+
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 5588999999999999999999986542 22222 1112210 00 1111223466788888899999
Q ss_pred EEEccccc
Q psy15151 275 IFIDELDA 282 (431)
Q Consensus 275 l~iDEid~ 282 (431)
|++.|+-.
T Consensus 239 IivGEiR~ 246 (332)
T PRK13900 239 IIVGELRG 246 (332)
T ss_pred EEEEecCC
Confidence 99999854
No 390
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.00031 Score=63.19 Aligned_cols=34 Identities=32% Similarity=0.610 Sum_probs=27.1
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
.|+|.||||+||||+|+.||+. .++..++...+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4899999999999999999999 445566654443
No 391
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.31 E-value=0.00068 Score=61.44 Aligned_cols=71 Identities=25% Similarity=0.386 Sum_probs=45.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehh-hhhHh---hh----------cchHHHHHHHHHHHHhCCCeE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGP-QLVQM---FI----------GDGAKLVRDAFALAKEKAPAI 274 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~-~l~~~---~~----------g~~~~~~~~lf~~a~~~~p~v 274 (431)
.+..++|.||+|+|||+++++++..... ..+.+... ++... .+ +........++..+.+..|.+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 5678999999999999999999986432 22222111 11000 00 111223456666777788999
Q ss_pred EEEcccc
Q psy15151 275 IFIDELD 281 (431)
Q Consensus 275 l~iDEid 281 (431)
++++|+-
T Consensus 104 i~igEir 110 (186)
T cd01130 104 IIVGEVR 110 (186)
T ss_pred EEEEccC
Confidence 9999984
No 392
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.31 E-value=0.0015 Score=60.89 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.5
Q ss_pred CCCCceeeCCCCCchHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~ 234 (431)
++..++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999987
No 393
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.30 E-value=0.00088 Score=65.76 Aligned_cols=74 Identities=19% Similarity=0.329 Sum_probs=47.0
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEee-hhhhhHh-------h-----hcchHHHHHHHHHHHHhCCCe
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLA-GPQLVQM-------F-----IGDGAKLVRDAFALAKEKAPA 273 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~-~~~l~~~-------~-----~g~~~~~~~~lf~~a~~~~p~ 273 (431)
+....++++.||+|+|||+++++++..... ..+.+. ..++.-. . .+...-....++..+.+..|.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 346689999999999999999999986532 222221 1111000 0 011112345677777788899
Q ss_pred EEEEccccc
Q psy15151 274 IIFIDELDA 282 (431)
Q Consensus 274 vl~iDEid~ 282 (431)
+|++||+-.
T Consensus 221 ~ii~gE~r~ 229 (308)
T TIGR02788 221 RIILGELRG 229 (308)
T ss_pred eEEEeccCC
Confidence 999999853
No 394
>PRK06217 hypothetical protein; Validated
Probab=97.30 E-value=0.00021 Score=64.61 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=27.9
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
.|+|.|+||+|||++++.|++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876654
No 395
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00069 Score=61.32 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.1
Q ss_pred ceeeCCCCCchHHHHHHHHHHcC
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~ 237 (431)
++|+|+||+|||++|+.+|..+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999754
No 396
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.30 E-value=0.0027 Score=59.32 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=29.0
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeeh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAG 245 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~ 245 (431)
|++++..++++||||+|||+++..++.. .+.+.+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6778889999999999999999987643 2445555543
No 397
>PLN02200 adenylate kinase family protein
Probab=97.30 E-value=0.00047 Score=64.92 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=32.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~ 252 (431)
.+..+++.||||+|||++|+.+|..++.+ .+++.+++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~~ 81 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRRE 81 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHHH
Confidence 45678999999999999999999998754 56776666543
No 398
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.29 E-value=0.001 Score=65.51 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=63.4
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---------CCceEEeehhhh------hHh--hhcchH-------------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---------KSTFLKLAGPQL------VQM--FIGDGA------------- 257 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---------~~~~i~i~~~~l------~~~--~~g~~~------------- 257 (431)
|++.+..++|+||||+|||.+|-.+|... +...+++++.+- .+. .+|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 57777889999999999999999998652 235677765431 000 011100
Q ss_pred ------HHHHHHHHHHHh-CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q psy15151 258 ------KLVRDAFALAKE-KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN 325 (431)
Q Consensus 258 ------~~~~~lf~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn 325 (431)
..+..+...+.. ..+.+|+||=|-.+........ ....+-+..+.+++..+.......++.+|+|..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGR-GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 011122223333 4567999999998754321111 011112333444444443333345666666654
No 399
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.29 E-value=0.0018 Score=59.72 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~ 234 (431)
.+.-++|.||+|+|||++.+.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346689999999999999999974
No 400
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.29 E-value=0.0013 Score=60.02 Aligned_cols=127 Identities=22% Similarity=0.281 Sum_probs=74.4
Q ss_pred ccChHHHHhcC--CCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehh----hhhHh-----------------
Q psy15151 198 MTHKEKFVNLG--IQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGP----QLVQM----------------- 251 (431)
Q Consensus 198 ~~~~~~~~~~g--~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~----~l~~~----------------- 251 (431)
..+.++-.++| ++.+.-+++.|+.|||||.|+..++.- .+....++... +++..
T Consensus 12 ~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l 91 (235)
T COG2874 12 SGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRL 91 (235)
T ss_pred CCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhccee
Confidence 34444445554 566667889999999999999999872 12222222211 11100
Q ss_pred ------------hhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeE
Q psy15151 252 ------------FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIK 319 (431)
Q Consensus 252 ------------~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~ 319 (431)
......+.+..+.+..+.....||+||-+..++... + ...+++++..+..+...+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~-------~---~~~vl~fm~~~r~l~d~gKv- 160 (235)
T COG2874 92 LFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD-------S---EDAVLNFMTFLRKLSDLGKV- 160 (235)
T ss_pred EEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc-------c---HHHHHHHHHHHHHHHhCCCE-
Confidence 001123345556666677778899999999875432 1 23455666665555555555
Q ss_pred EEEEeCCCCCCChhhhc
Q psy15151 320 VIAATNRVDILDPALLR 336 (431)
Q Consensus 320 vI~ttn~~~~l~~~l~r 336 (431)
||.|. +|+.++.+..-
T Consensus 161 IilTv-hp~~l~e~~~~ 176 (235)
T COG2874 161 IILTV-HPSALDEDVLT 176 (235)
T ss_pred EEEEe-ChhhcCHHHHH
Confidence 33444 56778776655
No 401
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.29 E-value=0.0002 Score=62.23 Aligned_cols=28 Identities=25% Similarity=0.580 Sum_probs=24.7
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
++|.|+||+|||++|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998776554
No 402
>PRK14531 adenylate kinase; Provisional
Probab=97.28 E-value=0.00022 Score=64.41 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=26.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
..++++||||+|||++++.+|...+.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4599999999999999999999998776543
No 403
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.28 E-value=0.00022 Score=62.99 Aligned_cols=28 Identities=32% Similarity=0.568 Sum_probs=24.5
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
++|.||||+|||++|+.++..++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866543
No 404
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.27 E-value=0.00083 Score=61.28 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=24.0
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 347778999999999999999999984
No 405
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.26 E-value=0.0015 Score=58.25 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=18.4
Q ss_pred CCceeeCCCCCchHH-HHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTL-LARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~-lakala~~ 235 (431)
..+++.||+|+|||+ ++..+...
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~ 48 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEA 48 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHH
Confidence 679999999999999 55555554
No 406
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.26 E-value=0.0025 Score=71.86 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=100.0
Q ss_pred cCCCCCCCceeeCCCCCchHHH-HHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHH---Hh------CC-----
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLL-ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALA---KE------KA----- 271 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~l-akala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a---~~------~~----- 271 (431)
..+...++++++||||+|||++ +-++-++.-..++.+|-+.... ++..++-+-+.. .. .+
T Consensus 1489 ~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK 1563 (3164)
T COG5245 1489 EALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVK 1563 (3164)
T ss_pred HHHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchh
Confidence 3345668999999999999986 4566666667777776542211 111221111110 00 00
Q ss_pred CeEEEEccccccccCCCCCCCcCcHHHHHHHH-HHHHhhcCCCC--------CCCeEEEEEeCCCCCCC-----hhhhcC
Q psy15151 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTML-ELLNQLDGFSS--------TADIKVIAATNRVDILD-----PALLRS 337 (431)
Q Consensus 272 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~-~lL~~~~~~~~--------~~~v~vI~ttn~~~~l~-----~~l~r~ 337 (431)
-.|||.|||. | +....-. ++.+ -.++ +++. -.|+.+ -.++++.+++|++.... ..+.|
T Consensus 1564 ~lVLFcDeIn-L-p~~~~y~---~~~v-I~FlR~l~e-~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r- 1635 (3164)
T COG5245 1564 DLVLFCDEIN-L-PYGFEYY---PPTV-IVFLRPLVE-RQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR- 1635 (3164)
T ss_pred heEEEeeccC-C-ccccccC---CCce-EEeeHHHHH-hcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc-
Confidence 1499999998 3 2221111 1111 1223 3333 344433 25788999999876533 34443
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-------------CCCH--------HHHHHHcCCCCHHHHHHHHHHHH
Q psy15151 338 GRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-------------DVNY--------EELSRSTDDFNGAQCKAVCVEAG 396 (431)
Q Consensus 338 gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-------------~~~~--------~~la~~~~g~s~~di~~l~~~A~ 396 (431)
| ...+....|.......|...++.+..+-- .+.+ ....+.-.+|+|+++-..++...
T Consensus 1636 -~-~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~ 1713 (3164)
T COG5245 1636 -K-PVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIF 1713 (3164)
T ss_pred -C-ceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHH
Confidence 2 34677889998888888887665422211 0100 11112225789999988877555
Q ss_pred HHHHHh
Q psy15151 397 MIALRR 402 (431)
Q Consensus 397 ~~A~~~ 402 (431)
..|..+
T Consensus 1714 ~yaeT~ 1719 (3164)
T COG5245 1714 GYAETR 1719 (3164)
T ss_pred hHHhcC
Confidence 555433
No 407
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.0024 Score=58.07 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=60.8
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcC----CceEEeehhh-----------------hhH-----hh--h-----cch
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTK----STFLKLAGPQ-----------------LVQ-----MF--I-----GDG 256 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~----~~~i~i~~~~-----------------l~~-----~~--~-----g~~ 256 (431)
.++..+.|.||+|+|||+|++.++.... .--+.++... +.. .. + .-+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LS 110 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLS 110 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCC
Confidence 4667889999999999999999996311 0011111100 000 00 0 001
Q ss_pred HH-HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 257 AK-LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 257 ~~-~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
.+ ..+-.+..+-...|.++++||-..- -+......+.+++..+.. . +..+|++|+.++
T Consensus 111 gGe~qrv~la~al~~~p~vlllDEP~~~----------LD~~~~~~l~~~l~~~~~---~-~~tiiivtH~~~ 169 (192)
T cd03232 111 VEQRKRLTIGVELAAKPSILFLDEPTSG----------LDSQAAYNIVRFLKKLAD---S-GQAILCTIHQPS 169 (192)
T ss_pred HHHhHHHHHHHHHhcCCcEEEEeCCCcC----------CCHHHHHHHHHHHHHHHH---c-CCEEEEEEcCCh
Confidence 11 1122344555567899999997653 266677778888876532 2 345777777543
No 408
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.25 E-value=0.00073 Score=62.27 Aligned_cols=27 Identities=37% Similarity=0.588 Sum_probs=23.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346778999999999999999999984
No 409
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.25 E-value=0.0003 Score=65.98 Aligned_cols=33 Identities=24% Similarity=0.577 Sum_probs=28.1
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
|..++|.||||+|||++|+.+|+..+.+++.++
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 355999999999999999999999987665543
No 410
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.24 E-value=0.00026 Score=64.22 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=28.2
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~ 251 (431)
|+|.||||+|||++|+.||...+..++ +..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHHH
Confidence 799999999999999999999876654 44445443
No 411
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.24 E-value=0.0013 Score=66.08 Aligned_cols=101 Identities=20% Similarity=0.319 Sum_probs=58.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCC---ceEEeehhhhhHhhh-cchHHHHHHHHH-------------------HH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKS---TFLKLAGPQLVQMFI-GDGAKLVRDAFA-------------------LA 267 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~---~~i~i~~~~l~~~~~-g~~~~~~~~lf~-------------------~a 267 (431)
.+..+++.||.|||||++.+++...+.. .++.+..+......+ |. ..+...|. ..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G--~T~hs~f~i~~~~~~~~~~~~~~~~~~~~ 98 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGG--RTIHSFFGIPINNNEKSQCKISKNSRLRE 98 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCC--cchHHhcCccccccccccccccccchhhh
Confidence 5678999999999999999999886543 344443333333333 11 01111110 01
Q ss_pred HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC----CCCCCeEEEEEe
Q psy15151 268 KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF----SSTADIKVIAAT 324 (431)
Q Consensus 268 ~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~----~~~~~v~vI~tt 324 (431)
....-.+|+||||-.+ +......+.+.|..+... ..-+++.||+..
T Consensus 99 ~l~~~~~lIiDEism~-----------~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vil~G 148 (364)
T PF05970_consen 99 RLRKADVLIIDEISMV-----------SADMLDAIDRRLRDIRKSKDSDKPFGGKQVILFG 148 (364)
T ss_pred hhhhheeeecccccch-----------hHHHHHHHHHhhhhhhcccchhhhcCcceEEeeh
Confidence 1122359999999887 555666666666665443 123566666654
No 412
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.24 E-value=0.0014 Score=64.32 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=31.3
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---------CCceEEeehhh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---------KSTFLKLAGPQ 247 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---------~~~~i~i~~~~ 247 (431)
|++.+.-++++||||+|||+++-.+|... +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56677778999999999999999998652 23677777644
No 413
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.23 E-value=0.00033 Score=62.70 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=30.2
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeeh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG 245 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~ 245 (431)
...|+|.||+|+|||++++.+|..++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999988877664
No 414
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.23 E-value=0.019 Score=57.98 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=47.8
Q ss_pred eEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC---CCChhhhcCCCcceEEEcCCC
Q psy15151 273 AIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD---ILDPALLRSGRLDRKIEFPHP 349 (431)
Q Consensus 273 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~---~l~~~l~r~gR~~~~i~~~~p 349 (431)
.||+||.+..-... +..+...|.++-..+- ..+---||+.|+... .|..++-+ |.-+.|.+...
T Consensus 150 PVVVIdnF~~k~~~--------~~~iy~~laeWAa~Lv---~~nIAHVIFlT~dv~~~k~LskaLPn--~vf~tI~L~Da 216 (431)
T PF10443_consen 150 PVVVIDNFLHKAEE--------NDFIYDKLAEWAASLV---QNNIAHVIFLTDDVSYSKPLSKALPN--RVFKTISLSDA 216 (431)
T ss_pred CEEEEcchhccCcc--------cchHHHHHHHHHHHHH---hcCccEEEEECCCCchhhhHHHhCCC--CceeEEeecCC
Confidence 49999999763211 2334444444433321 112222555554433 34455544 77789999999
Q ss_pred CHHHHHHHHHHHHhcC
Q psy15151 350 NEEARARIMQIHSRKM 365 (431)
Q Consensus 350 ~~~~r~~Il~~~l~~~ 365 (431)
+.+.-+.++..++...
T Consensus 217 s~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 217 SPESAKQYVLSQLDED 232 (431)
T ss_pred CHHHHHHHHHHHhccc
Confidence 9999889888888653
No 415
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.23 E-value=0.0019 Score=58.15 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=60.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehh--------------------h-----hhH------hh-hc
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGP--------------------Q-----LVQ------MF-IG 254 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~--------------------~-----l~~------~~-~g 254 (431)
+.++..+.|.||+|+|||+|++.++..... --+.+++. + +.. .. .+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS 102 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH
Confidence 346678999999999999999999985321 00111110 0 000 00 00
Q ss_pred --chHHH-HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 255 --DGAKL-VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 255 --~~~~~-~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
-+.+. .+-.+..+-...|.++++||--.- -+......+.+++..+.. . +..+|++|+..
T Consensus 103 ~~LS~G~~qrl~la~al~~~p~llllDEP~~~----------LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~ 164 (182)
T cd03215 103 SLLSGGNQQKVVLARWLARDPRVLILDEPTRG----------VDVGAKAEIYRLIRELAD---A-GKAVLLISSEL 164 (182)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEECCCCcC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCH
Confidence 01111 122344555577899999997653 266677778888877532 1 34577777754
No 416
>PRK06547 hypothetical protein; Provisional
Probab=97.22 E-value=0.00027 Score=63.31 Aligned_cols=34 Identities=41% Similarity=0.439 Sum_probs=29.0
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
++..|++.|++|+|||++|+.+++.++.+++..+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 4567889999999999999999999887776554
No 417
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.22 E-value=0.018 Score=58.87 Aligned_cols=195 Identities=15% Similarity=0.221 Sum_probs=98.4
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc----CCceEEeehhhhhH-------hh--------h--c--c-hHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAGPQLVQ-------MF--------I--G--D-GAKLVRDAFAL 266 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~~~l~~-------~~--------~--g--~-~~~~~~~lf~~ 266 (431)
+|..+++.||+|+|||+++..+|..+ +..+..++|..+-. .+ + + . +.......++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 45779999999999999988887652 44555565542210 00 1 1 1 12333455666
Q ss_pred HHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC-CCC--hhhhcCCCcceE
Q psy15151 267 AKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD-ILD--PALLRSGRLDRK 343 (431)
Q Consensus 267 a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~-~l~--~~l~r~gR~~~~ 343 (431)
+....+.+|++|=...+.. +......+..+... .....+++|+-++... .+. ..+...-.++ -
T Consensus 178 ~~~~~~DvVIIDTaGr~~~---------d~~l~~eL~~i~~~----~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~-g 243 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQI---------DEELMEELAAIKEI----LNPDEILLVVDAMTGQDAVNTAKTFNERLGLT-G 243 (428)
T ss_pred HHhcCCCEEEEeCCCcccc---------CHHHHHHHHHHHHh----hCCceEEEEEeccchHHHHHHHHHHHhhCCCC-E
Confidence 6666778999998776521 22223333333332 2233444444333221 111 1222211233 3
Q ss_pred EEcCCCCHHHHHHHHHHHHh--cCCC---------C--CCCCHHHHHHHcCCCCHHHHHHHHHHHHHH---------HHH
Q psy15151 344 IEFPHPNEEARARIMQIHSR--KMNV---------S--PDVNYEELSRSTDDFNGAQCKAVCVEAGMI---------ALR 401 (431)
Q Consensus 344 i~~~~p~~~~r~~Il~~~l~--~~~~---------~--~~~~~~~la~~~~g~s~~di~~l~~~A~~~---------A~~ 401 (431)
+.+...|...+.-.+..... +.++ + ...+.+.++.+.-|. +|+..++..|... +.+
T Consensus 244 iIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg~--gD~~~l~e~~~~~~~~~~~~~~~~~ 321 (428)
T TIGR00959 244 VVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGM--GDILSLVEKAQEVVDEEEAKKLAEK 321 (428)
T ss_pred EEEeCccCcccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhCC--CChHHHHHHHHHhhCHHHHHHHHHH
Confidence 33555554443332222211 1111 0 223456677766544 4666666644332 111
Q ss_pred hCCCCcCHHHHHHHHHHHHH
Q psy15151 402 RGAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 402 ~~~~~It~ed~~~Al~~~~~ 421 (431)
-.....|.+||.+-++.+..
T Consensus 322 ~~~~~f~l~d~~~q~~~~~k 341 (428)
T TIGR00959 322 MKKGQFDLEDFLEQLRQIKK 341 (428)
T ss_pred HHhCCCCHHHHHHHHHHHHh
Confidence 12346889999988887764
No 418
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.22 E-value=0.00027 Score=60.83 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=27.6
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
+.+.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999987776
No 419
>PRK14530 adenylate kinase; Provisional
Probab=97.22 E-value=0.00028 Score=65.46 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=26.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
..|+|.||||+|||++++.||..++.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3699999999999999999999998766543
No 420
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.20 E-value=0.00088 Score=63.02 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=24.0
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457788999999999999999999974
No 421
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.19 E-value=0.0022 Score=61.31 Aligned_cols=73 Identities=22% Similarity=0.358 Sum_probs=49.5
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCC----ceEEeeh-hhh---------hHhhhcchHHHHHHHHHHHHhCCCeEEE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKS----TFLKLAG-PQL---------VQMFIGDGAKLVRDAFALAKEKAPAIIF 276 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~----~~i~i~~-~~l---------~~~~~g~~~~~~~~lf~~a~~~~p~vl~ 276 (431)
+.+-||++||+|+|||+...++-...+. +++.+.- -++ .+.-+|.-.......+..|.+..|.||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 4456888999999999999888886553 3444322 122 2233455555555666777788899999
Q ss_pred Ecccccc
Q psy15151 277 IDELDAI 283 (431)
Q Consensus 277 iDEid~l 283 (431)
+-|+-.+
T Consensus 204 vGEmRD~ 210 (353)
T COG2805 204 VGEMRDL 210 (353)
T ss_pred EeccccH
Confidence 9998654
No 422
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.0032 Score=58.65 Aligned_cols=64 Identities=22% Similarity=0.276 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhc
Q psy15151 261 RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLR 336 (431)
Q Consensus 261 ~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r 336 (431)
+-++..|--..|.+|++||--.- -+......+++.+.++.. ..+..-+|+.|.+.+.++|-+-+
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~G----------LDl~~re~ll~~l~~~~~--~~~~~~ll~VtHh~eEi~~~~th 242 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQG----------LDLIAREQLLNRLEELAA--SPGAPALLFVTHHAEEIPPCFTH 242 (257)
T ss_pred HHHHHHHHhcCCCEEEecCcccc----------CChHHHHHHHHHHHHHhc--CCCCceEEEEEcchhhcccccce
Confidence 34567777788999999995431 133344466666666543 23445578888888888775544
No 423
>PTZ00035 Rad51 protein; Provisional
Probab=97.18 E-value=0.0014 Score=65.17 Aligned_cols=114 Identities=21% Similarity=0.269 Sum_probs=63.1
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---------CCceEEeehhhh---------hHhhhcc--------------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---------KSTFLKLAGPQL---------VQMFIGD-------------- 255 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---------~~~~i~i~~~~l---------~~~~~g~-------------- 255 (431)
|++.+.-+.|+||||+|||+++..++... +...++++.... ...+ |.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~-g~~~~~~l~nI~~~~~ 192 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERF-GLDPEDVLDNIAYARA 192 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHh-CCChHhHhhceEEEcc
Confidence 67777888999999999999999987532 334556665331 1110 11
Q ss_pred --hHH---HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q psy15151 256 --GAK---LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAA 323 (431)
Q Consensus 256 --~~~---~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~t 323 (431)
.+. .+..+........+.+|+||=|-.++....... +...+-+..+.+++..+.......++.||+|
T Consensus 193 ~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 193 YNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGR-GELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 011 111122223345678999999998765421111 1111223445556555544334456666655
No 424
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.18 E-value=0.00087 Score=65.90 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=46.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC-----CceEEee-hhhhhHh------hhcchHHHHHHHHHHHHhCCCeEEEEc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK-----STFLKLA-GPQLVQM------FIGDGAKLVRDAFALAKEKAPAIIFID 278 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~-----~~~i~i~-~~~l~~~------~~g~~~~~~~~lf~~a~~~~p~vl~iD 278 (431)
...++++.|++|+|||++++++..... ..++.+. ..++.-. +.....-....++..+.+..|..|++.
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivG 222 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVG 222 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEe
Confidence 347899999999999999999998641 2233322 2222110 111112235567777888999999999
Q ss_pred ccc
Q psy15151 279 ELD 281 (431)
Q Consensus 279 Eid 281 (431)
|+-
T Consensus 223 EiR 225 (323)
T PRK13833 223 EVR 225 (323)
T ss_pred ecC
Confidence 984
No 425
>PLN02674 adenylate kinase
Probab=97.18 E-value=0.00047 Score=65.08 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=30.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~ 251 (431)
++..++|.||||+||||+|+.||...+.+ .+++.+++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~GdllR~ 68 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDMLRA 68 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHHHH
Confidence 44679999999999999999999998854 4555555443
No 426
>PRK14974 cell division protein FtsY; Provisional
Probab=97.17 E-value=0.0025 Score=63.05 Aligned_cols=73 Identities=26% Similarity=0.351 Sum_probs=44.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh-------hHhh---hc----------chHHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL-------VQMF---IG----------DGAKLVRDAFALA 267 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l-------~~~~---~g----------~~~~~~~~lf~~a 267 (431)
.|..++|.||||+|||+++..+|..+ +..+..+++..+ ...+ .| .....+....+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 35679999999999999888888753 334433443211 1111 11 1112233444455
Q ss_pred HhCCCeEEEEcccccc
Q psy15151 268 KEKAPAIIFIDELDAI 283 (431)
Q Consensus 268 ~~~~p~vl~iDEid~l 283 (431)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5556679999999876
No 427
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.00069 Score=64.95 Aligned_cols=26 Identities=42% Similarity=0.611 Sum_probs=23.0
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~ 234 (431)
++.+.-+-|+||+|+||||+.|.||.
T Consensus 25 i~~Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 25 IKSGELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred ecCCcEEEEECCCCCcHHHHHHHHhC
Confidence 34567789999999999999999998
No 428
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.17 E-value=0.00092 Score=61.75 Aligned_cols=27 Identities=41% Similarity=0.496 Sum_probs=23.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346778999999999999999999984
No 429
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.16 E-value=0.0012 Score=64.86 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=35.0
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcc
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGD 255 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~ 255 (431)
.++..|+|.|++|||||++++.+|..++.+|+.++ ..+....|.
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D--~~i~~~~G~ 174 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN--REIEREAGL 174 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH--HHHHHHhCC
Confidence 46788999999999999999999999999998544 344433343
No 430
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.16 E-value=0.002 Score=58.69 Aligned_cols=105 Identities=24% Similarity=0.329 Sum_probs=61.7
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHc--CCc--eEEeehhh------------------hhH-----hh------h-c
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQT--KST--FLKLAGPQ------------------LVQ-----MF------I-G 254 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~--~~~--~i~i~~~~------------------l~~-----~~------~-g 254 (431)
+.++..+.|.||+|+|||+|.+.++... ... -+.++... +.. .. . .
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~ 111 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG 111 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhcc
Confidence 3467789999999999999999999865 210 11111100 000 00 0 0
Q ss_pred chHH-HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 255 DGAK-LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 255 ~~~~-~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
-+.+ ..+-.+..+-...|.++++||-..- -+......+.+++..+.. . +..+|++|..+
T Consensus 112 LS~G~~qrv~laral~~~p~illlDEP~~~----------LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~ 171 (194)
T cd03213 112 LSGGERKRVSIALELVSNPSLLFLDEPTSG----------LDSSSALQVMSLLRRLAD---T-GRTIICSIHQP 171 (194)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcC----------CCHHHHHHHHHHHHHHHh---C-CCEEEEEecCc
Confidence 1111 1122344555567899999997653 266677778888877532 2 34567777654
No 431
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0025 Score=58.15 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=21.2
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~ 234 (431)
+...-.-|.||+|||||++.|++-.
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHh
Confidence 3456678999999999999999976
No 432
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.15 E-value=0.0004 Score=61.85 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=28.6
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
..++|.|++|+|||++++.+|..++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46899999999999999999999999987654
No 433
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.15 E-value=0.0033 Score=56.40 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 262 DAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 262 ~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
-....|--+.|.+|+-||--- .-+++....++++++++.. .+..|+++|...+.
T Consensus 146 vaIARAiV~~P~vLlADEPTG----------NLDp~~s~~im~lfeeinr----~GtTVl~ATHd~~l 199 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTG----------NLDPDLSWEIMRLFEEINR----LGTTVLMATHDLEL 199 (223)
T ss_pred HHHHHHHccCCCeEeecCCCC----------CCChHHHHHHHHHHHHHhh----cCcEEEEEeccHHH
Confidence 345556667899999999532 1277777888888888653 34557777765433
No 434
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.15 E-value=0.002 Score=56.92 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~ 234 (431)
.++..++.||.|+|||++.++++-
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999865
No 435
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.14 E-value=0.001 Score=65.54 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=63.3
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc------C---CceEEeehhhh---------hHhhhcch-------------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT------K---STFLKLAGPQL---------VQMFIGDG------------- 256 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~------~---~~~i~i~~~~l---------~~~~~g~~------------- 256 (431)
|++++.-+.++||||+|||+++..++... + ...++++..+. ...+ +..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~-~~~~~~~l~~i~~~~~ 170 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERY-GLNPEDVLDNVAYARA 170 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHc-CCChHHhhccEEEEec
Confidence 67777888999999999999999987521 1 24566665441 1110 110
Q ss_pred ---HH---HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q psy15151 257 ---AK---LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT 324 (431)
Q Consensus 257 ---~~---~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt 324 (431)
.. .+..+........+.+|+||=|-.++....... .....-+..|.+++..+..+....++.||+|.
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 171 YNTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred CChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 00 112222223345688999999998854321111 01112233455555555444444566666653
No 436
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.14 E-value=0.00084 Score=61.48 Aligned_cols=111 Identities=21% Similarity=0.342 Sum_probs=62.2
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCC
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 287 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r 287 (431)
|......++|.|+-|+|||++++.|+.. ++.-+.... ........ +... -|+.+||++.+.
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------~~kd~~~~----l~~~--~iveldEl~~~~--- 108 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------DDKDFLEQ----LQGK--WIVELDELDGLS--- 108 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccC------CCcHHHHH----HHHh--HheeHHHHhhcc---
Confidence 4445567889999999999999999655 111110000 01111111 1121 289999999973
Q ss_pred CCCCCcCcHHHHHHHHHHHHhhc-CC---------CCCCCeEEEEEeCCCCCCC-hhhhcCCCcceEEEcCC
Q psy15151 288 FDSEKAGDREVQRTMLELLNQLD-GF---------SSTADIKVIAATNRVDILD-PALLRSGRLDRKIEFPH 348 (431)
Q Consensus 288 ~~~~~~~~~~~~~~l~~lL~~~~-~~---------~~~~~v~vI~ttn~~~~l~-~~l~r~gR~~~~i~~~~ 348 (431)
......+-.++..-. .. ..+...++|+|||..+-|. +.--| || ..|.+..
T Consensus 109 --------k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 109 --------KKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred --------hhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 222355556665411 11 1124567899999877554 33445 77 3444443
No 437
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0048 Score=61.89 Aligned_cols=96 Identities=23% Similarity=0.235 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh----h---Hhh-
Q psy15151 184 DKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL----V---QMF- 252 (431)
Q Consensus 184 ~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l----~---~~~- 252 (431)
...+..+.+.+...+..+..+ ...++.++|.||+|+|||+++..||..+ +..+..+++..+ . ..+
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~ya 292 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHh
Confidence 445555555554333332111 1235779999999999999999999754 233333433211 1 111
Q ss_pred --------hcchHHHHHHHHHHHHh-CCCeEEEEcccccc
Q psy15151 253 --------IGDGAKLVRDAFALAKE-KAPAIIFIDELDAI 283 (431)
Q Consensus 253 --------~g~~~~~~~~lf~~a~~-~~p~vl~iDEid~l 283 (431)
....+..+...+..+.. ....+||||-....
T Consensus 293 e~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 293 KTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred hhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 11234445555555543 24679999987764
No 438
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.14 E-value=0.0004 Score=68.93 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=47.6
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEee-hhhhhHh------------hhcchHHHHHHHHHHHHhCCCeE
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLA-GPQLVQM------------FIGDGAKLVRDAFALAKEKAPAI 274 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~-~~~l~~~------------~~g~~~~~~~~lf~~a~~~~p~v 274 (431)
....++++.||+|+|||+++++++..... .++.+. ..++.-. ..|...-....++..+.+..|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 36689999999999999999999986532 222221 1121100 00111223456778888889999
Q ss_pred EEEccccc
Q psy15151 275 IFIDELDA 282 (431)
Q Consensus 275 l~iDEid~ 282 (431)
|++.|+-.
T Consensus 240 IivGEiR~ 247 (344)
T PRK13851 240 ILLGEMRD 247 (344)
T ss_pred EEEEeeCc
Confidence 99999843
No 439
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.13 E-value=0.00089 Score=61.53 Aligned_cols=27 Identities=37% Similarity=0.471 Sum_probs=23.8
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346678999999999999999999984
No 440
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.13 E-value=0.001 Score=61.65 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=23.7
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346677999999999999999999984
No 441
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.13 E-value=0.005 Score=54.85 Aligned_cols=32 Identities=34% Similarity=0.351 Sum_probs=25.4
Q ss_pred ceeeCCCCCchHHHHHHHHHHc---CCceEEeehh
Q psy15151 215 VLLYGPPGTGKTLLARACAAQT---KSTFLKLAGP 246 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~---~~~~i~i~~~ 246 (431)
+++.||||+|||+++..++..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6889999999999999998764 5556666654
No 442
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.0018 Score=58.19 Aligned_cols=107 Identities=28% Similarity=0.391 Sum_probs=62.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCCc--eEEeehhhh---------hHh-----------hhc----------ch
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKST--FLKLAGPQL---------VQM-----------FIG----------DG 256 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~~--~i~i~~~~l---------~~~-----------~~g----------~~ 256 (431)
+.++..+.|.||+|+|||+|+++++...... -+.++...+ ... +.+ -+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 3466778899999999999999999753210 111111000 000 000 11
Q ss_pred -HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 257 -AKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 257 -~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
....+-.+..+-...|.++++||--.- -+...+..+.+++..+.. ..+..+|++|+.++
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~----------LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~ 162 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSA----------LDPITRREVRALLKSLQA---QLGITVVLVTHDLD 162 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 112233455566678899999997653 266777788888877532 22345677776543
No 443
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.13 E-value=0.0018 Score=59.09 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=23.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 446778999999999999999999984
No 444
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00078 Score=62.61 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.7
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346677999999999999999999984
No 445
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.13 E-value=0.0015 Score=69.84 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=24.5
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++++..+.|.||+|+|||||++.++..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 467788999999999999999999984
No 446
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.12 E-value=0.01 Score=52.09 Aligned_cols=132 Identities=15% Similarity=0.196 Sum_probs=78.5
Q ss_pred eCCCCCchHHHHHHHHHHcC-CceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcH
Q psy15151 218 YGPPGTGKTLLARACAAQTK-STFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 296 (431)
Q Consensus 218 ~GppGtGKT~lakala~~~~-~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~ 296 (431)
.+.+|||||+++.+|++-.+ +.. +.-.++..+ ...+.+..+.+.+......+||.|==.+....
T Consensus 5 IAtiGCGKTTva~aL~~LFg~wgH--vQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~re---------- 69 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGEWGH--VQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRE---------- 69 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCCCCc--cccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHH----------
Confidence 47899999999999999887 433 332233222 34555666666664445569999976654222
Q ss_pred HHHHHHHHHHHhhcC--CCCCCCeEEEEEeCCCCCCCh--------hhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCC
Q psy15151 297 EVQRTMLELLNQLDG--FSSTADIKVIAATNRVDILDP--------ALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMN 366 (431)
Q Consensus 297 ~~~~~l~~lL~~~~~--~~~~~~v~vI~ttn~~~~l~~--------~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~ 366 (431)
...+...+..+.. .....++.+|+-.=..+.-.+ .++.+|-=...|.....+......|+.-+++.+.
T Consensus 70 --R~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 70 --RKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred --HHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 2445555544322 223456777776543333222 2333232334777777778888888888877654
No 447
>KOG0058|consensus
Probab=97.12 E-value=0.0008 Score=71.21 Aligned_cols=28 Identities=36% Similarity=0.579 Sum_probs=24.9
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHH
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~ 234 (431)
+.++|+..+-|.||+|.|||++|..+-+
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3467888999999999999999998877
No 448
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.12 E-value=0.0034 Score=58.63 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~ 234 (431)
.+.-++|.||.|+|||++.+.++-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 445689999999999999999875
No 449
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.11 E-value=0.0011 Score=61.58 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.6
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346677999999999999999999984
No 450
>KOG1808|consensus
Probab=97.11 E-value=0.00068 Score=78.65 Aligned_cols=131 Identities=21% Similarity=0.319 Sum_probs=85.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhh------hhHhhhcchHH----HHHHHHHHHHhCCCeEEEEccccc
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQ------LVQMFIGDGAK----LVRDAFALAKEKAPAIIFIDELDA 282 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~------l~~~~~g~~~~----~~~~lf~~a~~~~p~vl~iDEid~ 282 (431)
..+||-||+|+|||.+++.+|...+..+++++-.+ ++..|+....+ .-.-+...++.+ +.+++||+..
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G--~~~vlD~lnl 518 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNG--DWIVLDELNL 518 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhC--CEEEeccccc
Confidence 47999999999999999999999999999986543 33333322211 123455666665 5999999988
Q ss_pred cccCCCCCCCcCcHHHHHHHHHHHHhhcC---------CCCCCCeEEEEEeCCCCC------CChhhhcCCCcceEEEcC
Q psy15151 283 IGTKRFDSEKAGDREVQRTMLELLNQLDG---------FSSTADIKVIAATNRVDI------LDPALLRSGRLDRKIEFP 347 (431)
Q Consensus 283 l~~~r~~~~~~~~~~~~~~l~~lL~~~~~---------~~~~~~v~vI~ttn~~~~------l~~~l~r~gR~~~~i~~~ 347 (431)
. +.++...|.++++.-.. +....+.++++|-|.+.. +..++++ ||. .++|.
T Consensus 519 a-----------~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~--rf~-e~~f~ 584 (1856)
T KOG1808|consen 519 A-----------PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRN--RFI-ELHFD 584 (1856)
T ss_pred c-----------chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccc--cch-hhhhh
Confidence 5 67788889998886221 122345666777777644 3445665 664 34444
Q ss_pred CCCHHHHHHHHH
Q psy15151 348 HPNEEARARIMQ 359 (431)
Q Consensus 348 ~p~~~~r~~Il~ 359 (431)
....++...|+.
T Consensus 585 ~~~e~e~~~i~~ 596 (1856)
T KOG1808|consen 585 DIGEEELEEILE 596 (1856)
T ss_pred hcCchhhhhhhc
Confidence 444444444444
No 451
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.0097 Score=60.32 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=41.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc----CCceEEeehhhh-------hHhh---hcc---hHHHHHHHHHHHHhCCCe
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAGPQL-------VQMF---IGD---GAKLVRDAFALAKEKAPA 273 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~~~l-------~~~~---~g~---~~~~~~~lf~~a~~~~p~ 273 (431)
.+..++|.||+|+|||+++..+|... +..+..+++..+ ...| .|- .......+.+.+......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 34568899999999999999999743 333333433221 1111 111 112233444455555678
Q ss_pred EEEEccccc
Q psy15151 274 IIFIDELDA 282 (431)
Q Consensus 274 vl~iDEid~ 282 (431)
+|+||=...
T Consensus 302 ~VLIDTaGr 310 (432)
T PRK12724 302 LILIDTAGY 310 (432)
T ss_pred EEEEeCCCC
Confidence 999997543
No 452
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.0004 Score=60.45 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=25.7
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
+-+.|||||||||+|+.+|..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999998875
No 453
>PRK13946 shikimate kinase; Provisional
Probab=97.10 E-value=0.00042 Score=62.70 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=30.6
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeeh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG 245 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~ 245 (431)
+..|+|.|++|+|||++++.+|..++.+|+..+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4679999999999999999999999999877664
No 454
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.10 E-value=0.0021 Score=58.95 Aligned_cols=106 Identities=21% Similarity=0.273 Sum_probs=62.2
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHc--C--CceEEeehhhh-------------------------------hHhhh
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQT--K--STFLKLAGPQL-------------------------------VQMFI 253 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~--~--~~~i~i~~~~l-------------------------------~~~~~ 253 (431)
+.++..+.|.||+|+|||+|++.++... . .--+.++...+ ...+.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~ 102 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVN 102 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcc
Confidence 3477889999999999999999999862 1 11122221100 00000
Q ss_pred cc-hHH-HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 254 GD-GAK-LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 254 g~-~~~-~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
.. +.+ ..+-.+..+-...|.++++||--.- -+......+.++|..+.. . +..+|++|+.++
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~----------LD~~~~~~l~~~L~~~~~---~-~~tiii~sh~~~ 165 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSG----------LDIDALRLVAEVINKLRE---E-GKSVLIITHYQR 165 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHH
Confidence 01 111 1223345555577899999997542 266667777788776531 1 345677777554
No 455
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0029 Score=63.02 Aligned_cols=100 Identities=24% Similarity=0.413 Sum_probs=68.9
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHcC--CceEEeehhhhhHhh------hc--------chHHHHHHHHHHHHhCC
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQTK--STFLKLAGPQLVQMF------IG--------DGAKLVRDAFALAKEKA 271 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~~--~~~i~i~~~~l~~~~------~g--------~~~~~~~~lf~~a~~~~ 271 (431)
|+-++.-+|+-|.||.|||+|.-.++..+. .+.+++.+.+-.... +| ..+..+..+.+.+....
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 345667789999999999999888887643 378888886543321 12 13445677888888899
Q ss_pred CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHH
Q psy15151 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 307 (431)
Q Consensus 272 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~ 307 (431)
|.+++||-|..+....-++..+.-..+...-..+++
T Consensus 169 p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~ 204 (456)
T COG1066 169 PDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMR 204 (456)
T ss_pred CCEEEEeccceeecccccCCCCcHHHHHHHHHHHHH
Confidence 999999999999776655444433334344444443
No 456
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.10 E-value=0.0029 Score=66.07 Aligned_cols=77 Identities=26% Similarity=0.250 Sum_probs=53.8
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhh------hc----------------------ch
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMF------IG----------------------DG 256 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~------~g----------------------~~ 256 (431)
|++++..+|+.||||+|||+|+-.++... +.+.+++...+-.+.+ +| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 67788899999999999999999888743 4455666543221111 01 01
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccc
Q psy15151 257 AKLVRDAFALAKEKAPAIIFIDELDAIG 284 (431)
Q Consensus 257 ~~~~~~lf~~a~~~~p~vl~iDEid~l~ 284 (431)
...+..+.+.+....|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 3445666677777789999999998763
No 457
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.00033 Score=68.88 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=22.2
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~ 234 (431)
..+.-+.|.||+||||||+.|.||.
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3556689999999999999999998
No 458
>PRK14528 adenylate kinase; Provisional
Probab=97.09 E-value=0.00043 Score=62.78 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=26.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
+.+++.||||+|||++|+.++...+.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999998776543
No 459
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.09 E-value=0.002 Score=56.20 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=27.8
Q ss_pred ceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh
Q psy15151 215 VLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL 248 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l 248 (431)
++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999987 556666765444
No 460
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.08 E-value=0.0013 Score=60.30 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 347788999999999999999999984
No 461
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.08 E-value=0.00088 Score=67.10 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=22.9
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||+|.+.+|..
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 46667889999999999999999984
No 462
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.08 E-value=0.0015 Score=64.81 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=66.1
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---------CCceEEeehhhh---------hHhhhcc--------------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---------KSTFLKLAGPQL---------VQMFIGD-------------- 255 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---------~~~~i~i~~~~l---------~~~~~g~-------------- 255 (431)
|++++.-+.++|+||+|||.+|..+|... +...++++..+- ...+ |.
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~-~~~~~~~l~~i~~~~~ 197 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERF-GLNGADVLENVAYARA 197 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHc-CCChhhhccceEEEec
Confidence 66777888999999999999999887431 235677766441 1111 10
Q ss_pred --hHH---HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q psy15151 256 --GAK---LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN 325 (431)
Q Consensus 256 --~~~---~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn 325 (431)
... .+..+........+.+|+||=|-.++....... +.....+..|.+++..+..+....++.||+|..
T Consensus 198 ~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~-g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 198 YNTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGR-GELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 011 111222233456788999999998865321111 111122344666666655444456676666643
No 463
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.07 E-value=0.032 Score=54.75 Aligned_cols=119 Identities=18% Similarity=0.114 Sum_probs=61.3
Q ss_pred CCeEEEEccccccccCCCC---CCCcCcHHHHHHHHHHHHhhcCCCC-CCCeEE--EEEeCC---CC--CCChhhhcCCC
Q psy15151 271 APAIIFIDELDAIGTKRFD---SEKAGDREVQRTMLELLNQLDGFSS-TADIKV--IAATNR---VD--ILDPALLRSGR 339 (431)
Q Consensus 271 ~p~vl~iDEid~l~~~r~~---~~~~~~~~~~~~l~~lL~~~~~~~~-~~~v~v--I~ttn~---~~--~l~~~l~r~gR 339 (431)
.|.++-+|++..++....- ....-++.-......+++.+.+... .++.+| +.+|.. +. .++.++....-
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 5778889999999876311 1112233333333333333222222 233333 444432 22 34444443111
Q ss_pred ------cc-------------eEEEcCCCCHHHHHHHHHHHHhcCCCCCCCC---HHHHHHHcCCCCHHHHH
Q psy15151 340 ------LD-------------RKIEFPHPNEEARARIMQIHSRKMNVSPDVN---YEELSRSTDDFNGAQCK 389 (431)
Q Consensus 340 ------~~-------------~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~---~~~la~~~~g~s~~di~ 389 (431)
|. ..|.++.++.+|...+++.+...--+....+ ..+--..+.+.+++++.
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 11 2689999999999999998876544443222 22222234456777764
No 464
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.07 E-value=0.0041 Score=65.00 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=30.2
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH----cCCceEEeeh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ----TKSTFLKLAG 245 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~----~~~~~i~i~~ 245 (431)
|++++..+|+.||||||||++|..++.+ .+.+.+++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~ 58 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF 58 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 6778899999999999999999988543 2556666654
No 465
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.07 E-value=0.00098 Score=58.11 Aligned_cols=35 Identities=29% Similarity=0.493 Sum_probs=28.9
Q ss_pred eeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 217 LYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 217 l~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
|.||||+|||++|+.||...+ +..+++.+++...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHHH
Confidence 579999999999999999986 56677777766554
No 466
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.07 E-value=0.0011 Score=70.95 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.4
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
.++++..+.|.||+|+|||||++.+++..
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35688899999999999999999998853
No 467
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.07 E-value=0.0058 Score=53.79 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=62.5
Q ss_pred CceeeCCCCCchHHHHHHHHHH---cCCceEE---eehh----hh--hHhh-------h--------cchHH---HHHHH
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQ---TKSTFLK---LAGP----QL--VQMF-------I--------GDGAK---LVRDA 263 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~---~~~~~i~---i~~~----~l--~~~~-------~--------g~~~~---~~~~l 263 (431)
-+.+|+++|.|||++|-.+|-. .|..+.. +.+. +. +..+ . ..... ..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 4778899999999999988764 2322222 1211 11 1110 0 01111 11223
Q ss_pred H----HHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCC
Q psy15151 264 F----ALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGR 339 (431)
Q Consensus 264 f----~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR 339 (431)
+ +.+....+.+|+||||-....-.. -....+.++|+. .+.+.-||+|... .+++++. +
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gl--------i~~~~v~~ll~~-----rp~~~evIlTGr~---~p~~l~e--~ 145 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGL--------LDVEEVVDLLKA-----KPEDLELVLTGRN---APKELIE--A 145 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCC--------CCHHHHHHHHHc-----CCCCCEEEEECCC---CCHHHHH--h
Confidence 3 333446789999999977643321 011345555543 3445668888764 5567766 6
Q ss_pred cceEEEcC
Q psy15151 340 LDRKIEFP 347 (431)
Q Consensus 340 ~~~~i~~~ 347 (431)
.|.+-++.
T Consensus 146 AD~VTEm~ 153 (159)
T cd00561 146 ADLVTEMR 153 (159)
T ss_pred Cceeeecc
Confidence 66655543
No 468
>PRK14527 adenylate kinase; Provisional
Probab=97.07 E-value=0.00046 Score=62.75 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=27.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
.+.-+++.||||+|||++|+.+|...+...+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 456799999999999999999999988655443
No 469
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.06 E-value=0.0011 Score=61.20 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=23.7
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346677999999999999999999984
No 470
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.06 E-value=0.00088 Score=67.53 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||+|.+.||..
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl 63 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGF 63 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 46677899999999999999999983
No 471
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.06 E-value=0.0014 Score=64.62 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=46.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc-----CCceEEe-ehhhhhH---h---hhcchHHHHHHHHHHHHhCCCeEEEEc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT-----KSTFLKL-AGPQLVQ---M---FIGDGAKLVRDAFALAKEKAPAIIFID 278 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~-----~~~~i~i-~~~~l~~---~---~~g~~~~~~~~lf~~a~~~~p~vl~iD 278 (431)
...++++.|++|+|||+++++++... ...++.+ +..++.- . +.....-....++..+.+..|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 45789999999999999999999863 1222222 1122210 0 111112235677888888999999999
Q ss_pred cccc
Q psy15151 279 ELDA 282 (431)
Q Consensus 279 Eid~ 282 (431)
|+-.
T Consensus 227 EiR~ 230 (319)
T PRK13894 227 EVRG 230 (319)
T ss_pred ccCC
Confidence 9853
No 472
>PRK10436 hypothetical protein; Provisional
Probab=97.05 E-value=0.0016 Score=67.14 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=60.0
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC---ceEEee-hhhhhH
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS---TFLKLA-GPQLVQ 250 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~---~~i~i~-~~~l~~ 250 (431)
.++++++-.+.+++.+...+.. +.+.+|+.||+|+||||+..++....+. .++.+- ..++.-
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~~--------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQQ--------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHHh--------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 4677877777777777766542 4567899999999999999887776543 233332 122211
Q ss_pred h-----hhcc-hHHHHHHHHHHHHhCCCeEEEEccccc
Q psy15151 251 M-----FIGD-GAKLVRDAFALAKEKAPAIIFIDELDA 282 (431)
Q Consensus 251 ~-----~~g~-~~~~~~~lf~~a~~~~p~vl~iDEid~ 282 (431)
. .++. ........+..+.+..|.||++.||-.
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 1 1111 112345566677778899999999853
No 473
>PRK13764 ATPase; Provisional
Probab=97.05 E-value=0.00064 Score=71.93 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=42.1
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCC---ceEEe-ehhhhh-----HhhhcchHHHHHHHHHHHHhCCCeEEEEcccc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKS---TFLKL-AGPQLV-----QMFIGDGAKLVRDAFALAKEKAPAIIFIDELD 281 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~---~~i~i-~~~~l~-----~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid 281 (431)
...++|++||||+||||++++++..... .+..+ +..++. ..+. ............+.+..|.+|++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 4578999999999999999999987542 22222 111221 1110 000111223333346679999999985
Q ss_pred c
Q psy15151 282 A 282 (431)
Q Consensus 282 ~ 282 (431)
.
T Consensus 335 d 335 (602)
T PRK13764 335 K 335 (602)
T ss_pred C
Confidence 3
No 474
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.05 E-value=0.0013 Score=60.60 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346678999999999999999999974
No 475
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0009 Score=66.22 Aligned_cols=24 Identities=46% Similarity=0.559 Sum_probs=20.8
Q ss_pred CCCCceeeCCCCCchHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~ 234 (431)
++.-+-|.||+||||||+.|.||.
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 444466999999999999999998
No 476
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0015 Score=61.85 Aligned_cols=91 Identities=25% Similarity=0.275 Sum_probs=56.9
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcCCc--eEEeehh--------h-----------------hhHhhhcchHHH--H
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTKST--FLKLAGP--------Q-----------------LVQMFIGDGAKL--V 260 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~~~--~i~i~~~--------~-----------------l~~~~~g~~~~~--~ 260 (431)
..+..+-|.|++||||||++|.+..-.... -+.+++. + +..+|..+-.+. .
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 466789999999999999999999853311 1222211 1 111122222222 2
Q ss_pred HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 261 RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 261 ~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
|-.+..|....|.+|+.||.-..+ +..++..++.+|..+.
T Consensus 117 Ri~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq 156 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQ 156 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHH
Confidence 334556666789999999988763 5566777777776654
No 477
>PRK02496 adk adenylate kinase; Provisional
Probab=97.04 E-value=0.00049 Score=62.12 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=25.9
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
.++|.||||+|||++|+.||..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999988665543
No 478
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.04 E-value=0.0034 Score=57.35 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=30.2
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
.+.++|++|+|||++++.+++..|.+++ ++.++....+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~ 40 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREAL 40 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHH
Confidence 4789999999999999999998787766 5555554444
No 479
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.04 E-value=0.0011 Score=65.28 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=40.8
Q ss_pred cccCchHHHHHHHHHhhccccChHHHHhcCCCC-CCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 179 DIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQP-PKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 179 ~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~-~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
++.|+++.+.++.+.+...... ... .+-++|.||+|+|||++++.|-+-+.
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g--------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQG--------LEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhc--------cCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 7999999999999988764332 222 24578899999999999999988654
No 480
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.04 E-value=0.0018 Score=61.46 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=27.0
Q ss_pred ceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh
Q psy15151 215 VLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL 248 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l 248 (431)
|+|.|+||+|||++|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999876 455666655433
No 481
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.04 E-value=0.0012 Score=60.52 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.8
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|.+.++..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346778999999999999999999984
No 482
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.03 E-value=0.0012 Score=61.15 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.8
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 346778999999999999999999984
No 483
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.03 E-value=0.00053 Score=63.39 Aligned_cols=34 Identities=29% Similarity=0.529 Sum_probs=27.6
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
|++.||||+|||++|+.||...+.+.+. +.+++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7899999999999999999998866554 444443
No 484
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.03 E-value=0.00056 Score=61.63 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=28.2
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
.-+++.||||+|||++|+.++..++.. .+++.+++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~--~~~~g~~~~ 39 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFT--HLSTGDLLR 39 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCc--EEeHHHHHH
Confidence 357899999999999999999998754 455555443
No 485
>PRK06696 uridine kinase; Validated
Probab=97.02 E-value=0.0011 Score=62.01 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=31.5
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLV 249 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~ 249 (431)
.+.-|.+.|+||+||||+|+.|+..+ +.+++.+.+.++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 34678899999999999999999987 5677776665553
No 486
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.02 E-value=0.0017 Score=64.23 Aligned_cols=41 Identities=27% Similarity=0.162 Sum_probs=33.9
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~ 252 (431)
...+.|.|+||+|||+|++.++...+.+++.-.+.++....
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~ 202 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEK 202 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHh
Confidence 35799999999999999999999999888766666555443
No 487
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.0014 Score=60.90 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.6
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346677899999999999999999984
No 488
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.02 E-value=0.0015 Score=61.19 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.7
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||+|++.++..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 346678999999999999999999974
No 489
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.00045 Score=60.84 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=25.9
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
.++++|.||||||++++.|+ .++...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 8887776654
No 490
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.01 E-value=0.0035 Score=61.12 Aligned_cols=53 Identities=26% Similarity=0.426 Sum_probs=36.3
Q ss_pred HHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 265 ALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 265 ~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
..+--+.|.++|+||--. +-++.....+.+++..+. ..++..|+++|..++.+
T Consensus 148 a~aL~~~P~lliLDEPt~----------GLDp~~~~~~~~~l~~l~---~~g~~tvlissH~l~e~ 200 (293)
T COG1131 148 ALALLHDPELLILDEPTS----------GLDPESRREIWELLRELA---KEGGVTILLSTHILEEA 200 (293)
T ss_pred HHHHhcCCCEEEECCCCc----------CCCHHHHHHHHHHHHHHH---hCCCcEEEEeCCcHHHH
Confidence 444456789999999654 236677777888887764 23446788888876543
No 491
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.01 E-value=0.0022 Score=62.85 Aligned_cols=136 Identities=23% Similarity=0.293 Sum_probs=76.3
Q ss_pred chHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHH
Q psy15151 183 LDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRD 262 (431)
Q Consensus 183 ~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~ 262 (431)
..+.+..+.+.+...+... .....-++|+|+.|+|||++++.+..-+|.....+..+..+..+ +..
T Consensus 54 d~~~~~~l~~~lg~~L~~~-------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~~------ 119 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGN-------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QEH------ 119 (304)
T ss_pred CHHHHHHHHHHHhHHhcCC-------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cCC------
Confidence 3345666666655444332 12446789999999999999999998887655443333323321 111
Q ss_pred HHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC----------CCCCCeEEEEEeCCCCCC--
Q psy15151 263 AFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF----------SSTADIKVIAATNRVDIL-- 330 (431)
Q Consensus 263 lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~----------~~~~~v~vI~ttn~~~~l-- 330 (431)
-|..+.-....+++.||++.- .+ .+ ...+-.+... +.+ .-.....+|++||..-.+
T Consensus 120 ~f~~a~l~gk~l~~~~E~~~~--~~------~~---~~~lK~lt~g-d~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~ 187 (304)
T TIGR01613 120 RFGLARLEGKRAVIGDEVQKG--YR------DD---ESTFKSLTGG-DTITARFKNKDPFEFTPKFTLVQSTNHLPRIRG 187 (304)
T ss_pred CchhhhhcCCEEEEecCCCCC--cc------cc---HHhhhhhhcC-CeEEeecccCCcEEEEEeeEEEEEcCCCCccCC
Confidence 133333344568999998742 00 01 1233333321 111 112346688889875444
Q ss_pred -ChhhhcCCCcceEEEcC
Q psy15151 331 -DPALLRSGRLDRKIEFP 347 (431)
Q Consensus 331 -~~~l~r~gR~~~~i~~~ 347 (431)
+.++.| |+ .+|.|+
T Consensus 188 ~~~a~~R--R~-~vi~f~ 202 (304)
T TIGR01613 188 FDGGIKR--RL-RIIPFT 202 (304)
T ss_pred CChhhee--eE-EEEecc
Confidence 457888 77 466664
No 492
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.99 E-value=0.0025 Score=68.10 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.9
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++++..+.|.||+|+|||+|++.++..
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~ 389 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRA 389 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3467888999999999999999999984
No 493
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.99 E-value=0.0021 Score=68.88 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=24.3
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.+.||+|+|||||++.++..
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457788999999999999999999984
No 494
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.99 E-value=0.0058 Score=58.84 Aligned_cols=73 Identities=27% Similarity=0.414 Sum_probs=43.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh-------hHhh---hc----------chHHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL-------VQMF---IG----------DGAKLVRDAFALA 267 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l-------~~~~---~g----------~~~~~~~~lf~~a 267 (431)
+++.++|.||+|+|||+++..+|..+ +..+.-+++..+ +..| .| .....+...+..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 45778899999999999999998754 444444444311 1111 01 1112222334445
Q ss_pred HhCCCeEEEEcccccc
Q psy15151 268 KEKAPAIIFIDELDAI 283 (431)
Q Consensus 268 ~~~~p~vl~iDEid~l 283 (431)
....+.+|+||=...+
T Consensus 151 ~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 151 KARNIDVVLIDTAGRL 166 (272)
T ss_pred HHCCCCEEEEeCCCCC
Confidence 5566789999987665
No 495
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.99 E-value=0.0026 Score=59.08 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.5
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+++..+-+.||+|||||+|.|.+...
T Consensus 32 ~~Gei~~iiGgSGsGKStlLr~I~Gl 57 (263)
T COG1127 32 PRGEILAILGGSGSGKSTLLRLILGL 57 (263)
T ss_pred cCCcEEEEECCCCcCHHHHHHHHhcc
Confidence 45667889999999999999999883
No 496
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.99 E-value=0.0044 Score=55.73 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=27.8
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
|.|+|++|+|||++++.+++ .|.++ +++.++.....
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~--i~~D~~~~~~~ 37 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPV--IDADKIAHEVY 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCE--EecCHHHHhhh
Confidence 67999999999999999998 67655 45555555443
No 497
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.99 E-value=0.0023 Score=67.66 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=24.7
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++++..+.+.||+|+|||+|++.++..
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3467788999999999999999999983
No 498
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.99 E-value=0.0019 Score=68.89 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=24.3
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++++..+.+.|++|+|||||++.++..
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 457788999999999999999999884
No 499
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.99 E-value=0.0013 Score=56.20 Aligned_cols=29 Identities=31% Similarity=0.237 Sum_probs=25.8
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKST 239 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~ 239 (431)
++..++|.|+.|+|||+++|.+++.++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 55678999999999999999999998753
No 500
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.99 E-value=0.00063 Score=63.12 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=26.2
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
.|+++||||+|||++|+.||...+.+.+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999998666554
Done!