Query psy15151
Match_columns 431
No_of_seqs 477 out of 3352
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:54:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_M 26S protease regulatory 100.0 1.1E-68 3.7E-73 540.7 34.3 415 17-431 14-434 (434)
2 4b4t_J 26S protease regulatory 100.0 2.9E-66 9.8E-71 515.7 41.8 372 34-425 24-395 (405)
3 4b4t_I 26S protease regulatory 100.0 4E-65 1.4E-69 508.6 35.4 359 47-425 71-429 (437)
4 4b4t_K 26S protease regulatory 100.0 2.2E-64 7.5E-69 508.9 38.3 381 30-430 44-427 (428)
5 4b4t_L 26S protease subunit RP 100.0 7.4E-63 2.5E-67 498.5 37.4 360 45-424 68-427 (437)
6 4b4t_H 26S protease regulatory 100.0 1E-60 3.6E-65 481.1 33.2 346 77-422 94-453 (467)
7 3cf2_A TER ATPase, transitiona 100.0 4.7E-46 1.6E-50 400.0 11.4 260 171-430 470-755 (806)
8 3cf2_A TER ATPase, transitiona 100.0 5.9E-44 2E-48 383.7 19.4 281 136-424 167-464 (806)
9 3h4m_A Proteasome-activating n 100.0 6.2E-39 2.1E-43 308.9 28.3 261 165-425 4-264 (285)
10 3cf0_A Transitional endoplasmi 100.0 8.3E-40 2.8E-44 318.3 21.3 254 170-423 7-285 (301)
11 2x8a_A Nuclear valosin-contain 100.0 8.6E-39 3E-43 306.9 21.0 251 171-424 3-269 (274)
12 2ce7_A Cell division protein F 100.0 6.6E-38 2.2E-42 320.8 27.5 249 172-421 10-258 (476)
13 1lv7_A FTSH; alpha/beta domain 100.0 4.3E-37 1.5E-41 292.0 27.9 251 170-421 4-254 (257)
14 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.5E-37 8.7E-42 303.5 23.1 249 170-424 4-304 (322)
15 3eie_A Vacuolar protein sortin 100.0 3.2E-37 1.1E-41 302.9 20.6 250 169-424 9-303 (322)
16 3hu3_A Transitional endoplasmi 100.0 2.8E-36 9.7E-41 310.9 27.7 251 173-426 199-466 (489)
17 2qp9_X Vacuolar protein sortin 100.0 2.1E-36 7.1E-41 300.9 22.1 250 169-424 42-336 (355)
18 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.1E-36 1E-40 286.1 19.4 250 173-423 1-253 (262)
19 2dhr_A FTSH; AAA+ protein, hex 100.0 1.2E-35 4.1E-40 305.7 22.3 249 173-422 26-274 (499)
20 1ixz_A ATP-dependent metallopr 100.0 2.8E-34 9.5E-39 272.2 27.7 246 170-416 8-253 (254)
21 2zan_A Vacuolar protein sortin 100.0 3.7E-35 1.3E-39 300.2 19.3 249 169-423 125-425 (444)
22 1iy2_A ATP-dependent metallopr 100.0 6.4E-33 2.2E-37 266.5 29.3 246 170-416 32-277 (278)
23 2r62_A Cell division protease 100.0 1.5E-36 5.2E-41 289.8 2.5 256 171-427 4-261 (268)
24 3d8b_A Fidgetin-like protein 1 100.0 3.5E-33 1.2E-37 278.0 23.5 262 157-424 63-339 (357)
25 3b9p_A CG5977-PA, isoform A; A 100.0 1.6E-33 5.6E-38 272.8 20.4 251 169-422 12-275 (297)
26 1ypw_A Transitional endoplasmi 100.0 8.9E-36 3.1E-40 324.7 -2.2 252 171-422 470-746 (806)
27 3vfd_A Spastin; ATPase, microt 100.0 3.8E-32 1.3E-36 273.5 21.9 250 169-422 106-368 (389)
28 1ypw_A Transitional endoplasmi 100.0 2E-29 6.9E-34 274.7 23.4 249 171-422 197-462 (806)
29 3t15_A Ribulose bisphosphate c 99.9 1.3E-26 4.4E-31 224.4 18.0 176 208-389 32-221 (293)
30 3syl_A Protein CBBX; photosynt 99.9 2.5E-23 8.4E-28 202.0 17.7 224 177-413 30-280 (309)
31 2c9o_A RUVB-like 1; hexameric 99.9 1.9E-24 6.4E-29 221.8 8.3 110 172-290 31-145 (456)
32 3uk6_A RUVB-like 2; hexameric 99.9 8.5E-23 2.9E-27 203.1 17.2 221 173-420 39-331 (368)
33 3pfi_A Holliday junction ATP-d 99.9 1.3E-21 4.5E-26 192.4 23.6 217 174-420 25-255 (338)
34 1qvr_A CLPB protein; coiled co 99.9 2.6E-24 8.7E-29 236.7 2.0 333 32-402 427-822 (854)
35 1hqc_A RUVB; extended AAA-ATPa 99.9 5.7E-21 1.9E-25 186.5 19.8 216 173-419 7-238 (324)
36 3pxi_A Negative regulator of g 99.9 6.3E-21 2.1E-25 207.3 19.1 231 145-401 463-726 (758)
37 2v1u_A Cell division control p 99.9 5.7E-20 2E-24 183.0 22.7 228 174-422 15-279 (387)
38 1ofh_A ATP-dependent HSL prote 99.8 6.9E-21 2.4E-25 184.3 14.4 242 177-420 14-300 (310)
39 1g8p_A Magnesium-chelatase 38 99.8 1.1E-19 3.9E-24 179.0 21.4 226 171-425 17-328 (350)
40 3m6a_A ATP-dependent protease 99.8 1.5E-21 5.2E-26 204.0 8.1 227 174-418 77-340 (543)
41 3hws_A ATP-dependent CLP prote 99.8 5.7E-20 1.9E-24 182.9 17.1 235 179-415 16-345 (363)
42 1d2n_A N-ethylmaleimide-sensit 99.8 4E-20 1.4E-24 176.5 14.4 223 175-418 30-263 (272)
43 2r44_A Uncharacterized protein 99.8 1.7E-19 5.8E-24 177.0 18.7 222 174-424 23-302 (331)
44 2chg_A Replication factor C sm 99.8 9.1E-19 3.1E-23 160.0 21.8 201 173-417 12-224 (226)
45 4fcw_A Chaperone protein CLPB; 99.8 4.6E-20 1.6E-24 178.9 13.2 207 175-401 14-280 (311)
46 1r6b_X CLPA protein; AAA+, N-t 99.8 4.3E-20 1.5E-24 200.8 13.8 203 176-400 456-716 (758)
47 2qby_B CDC6 homolog 3, cell di 99.8 6.3E-19 2.1E-23 175.8 17.7 213 178-421 20-272 (384)
48 3pvs_A Replication-associated 99.8 4.1E-19 1.4E-23 181.1 16.4 203 174-418 22-243 (447)
49 1l8q_A Chromosomal replication 99.8 1.2E-18 4.1E-23 170.4 18.8 219 173-420 6-241 (324)
50 1g41_A Heat shock protein HSLU 99.8 1.9E-20 6.4E-25 189.2 5.8 170 177-358 14-188 (444)
51 2z4s_A Chromosomal replication 99.8 2.6E-18 9E-23 175.1 20.4 220 172-420 99-333 (440)
52 2qby_A CDC6 homolog 1, cell di 99.8 3.2E-18 1.1E-22 170.0 20.4 226 174-421 16-274 (386)
53 1njg_A DNA polymerase III subu 99.8 6.4E-18 2.2E-22 156.2 20.2 201 174-416 19-248 (250)
54 1um8_A ATP-dependent CLP prote 99.8 1.1E-18 3.9E-23 174.2 16.0 237 178-416 21-362 (376)
55 3te6_A Regulatory protein SIR3 99.8 4.1E-19 1.4E-23 172.5 9.3 215 180-420 22-316 (318)
56 1fnn_A CDC6P, cell division co 99.8 1.1E-17 3.9E-22 166.6 20.0 223 175-420 14-275 (389)
57 1sxj_D Activator 1 41 kDa subu 99.8 1.4E-17 4.7E-22 164.1 19.6 206 173-417 32-261 (353)
58 3bos_A Putative DNA replicatio 99.8 9E-18 3.1E-22 155.9 17.2 206 173-417 23-241 (242)
59 3u61_B DNA polymerase accessor 99.8 4.2E-18 1.4E-22 166.4 15.5 200 174-418 22-236 (324)
60 1jbk_A CLPB protein; beta barr 99.8 1.7E-18 5.7E-23 154.6 11.5 159 174-358 18-194 (195)
61 2bjv_A PSP operon transcriptio 99.8 5E-18 1.7E-22 161.2 14.7 208 175-412 3-250 (265)
62 1in4_A RUVB, holliday junction 99.8 9.2E-17 3.2E-21 157.9 23.8 217 174-420 21-251 (334)
63 1r6b_X CLPA protein; AAA+, N-t 99.7 2.9E-17 9.8E-22 178.5 19.6 221 174-420 182-434 (758)
64 3pxg_A Negative regulator of g 99.7 7.1E-18 2.4E-22 173.3 13.9 206 174-420 176-407 (468)
65 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 1.6E-18 5.6E-23 178.4 8.7 211 178-418 22-284 (500)
66 1sxj_A Activator 1 95 kDa subu 99.7 1.2E-17 4.1E-22 173.7 14.9 222 172-419 33-274 (516)
67 2chq_A Replication factor C sm 99.7 3.4E-17 1.2E-21 158.7 15.1 205 172-416 11-223 (319)
68 1ojl_A Transcriptional regulat 99.7 1.4E-17 4.7E-22 161.7 11.3 206 178-413 2-246 (304)
69 1sxj_B Activator 1 37 kDa subu 99.7 2.8E-16 9.5E-21 152.6 20.5 200 174-417 17-229 (323)
70 2p65_A Hypothetical protein PF 99.7 3.9E-17 1.3E-21 145.3 11.5 152 174-350 18-187 (187)
71 1iqp_A RFCS; clamp loader, ext 99.7 4.1E-16 1.4E-20 151.6 19.7 186 172-396 19-216 (327)
72 3pxi_A Negative regulator of g 99.7 8.8E-17 3E-21 174.7 16.3 189 174-403 176-389 (758)
73 1jr3_A DNA polymerase III subu 99.7 2.5E-16 8.5E-21 156.3 18.1 201 174-416 12-241 (373)
74 1qvr_A CLPB protein; coiled co 99.7 1.1E-16 3.7E-21 176.1 16.6 203 174-402 166-395 (854)
75 3f9v_A Minichromosome maintena 99.7 2.2E-17 7.4E-22 174.2 9.6 226 177-422 294-590 (595)
76 1sxj_C Activator 1 40 kDa subu 99.7 2.5E-15 8.4E-20 147.9 17.6 206 173-417 20-237 (340)
77 3co5_A Putative two-component 99.6 1.5E-16 5E-21 137.1 7.2 132 179-349 5-142 (143)
78 3n70_A Transport activator; si 99.6 2.8E-16 9.6E-21 135.6 9.0 132 179-349 2-144 (145)
79 1sxj_E Activator 1 40 kDa subu 99.6 1E-14 3.4E-19 143.9 20.0 192 170-399 6-244 (354)
80 3k1j_A LON protease, ATP-depen 99.6 2.5E-15 8.4E-20 159.1 12.6 216 172-418 35-374 (604)
81 1w5s_A Origin recognition comp 99.6 8.2E-14 2.8E-18 139.8 20.8 232 174-420 18-294 (412)
82 1a5t_A Delta prime, HOLB; zinc 99.5 9.7E-13 3.3E-17 129.2 17.6 171 183-392 7-205 (334)
83 1ny5_A Transcriptional regulat 99.5 3.7E-13 1.3E-17 134.8 13.2 210 177-416 136-384 (387)
84 2gno_A DNA polymerase III, gam 99.4 5.7E-13 2E-17 129.0 13.5 142 182-362 1-152 (305)
85 3kw6_A 26S protease regulatory 99.4 4.5E-13 1.6E-17 102.8 9.1 77 347-423 1-77 (78)
86 2krk_A 26S protease regulatory 99.4 4.4E-13 1.5E-17 104.8 8.2 78 346-423 8-85 (86)
87 3cmw_A Protein RECA, recombina 99.4 1.2E-13 3.9E-18 158.2 6.2 153 173-326 1015-1217(1706)
88 3f8t_A Predicted ATPase involv 99.4 1.2E-11 4.1E-16 124.5 17.1 217 180-422 215-486 (506)
89 3aji_B S6C, proteasome (prosom 99.3 1.7E-12 5.8E-17 100.9 7.0 83 349-431 1-83 (83)
90 3dzd_A Transcriptional regulat 99.3 3.2E-12 1.1E-16 127.1 10.9 195 178-399 129-361 (368)
91 3vlf_B 26S protease regulatory 99.3 5.1E-12 1.7E-16 99.2 8.4 73 350-422 2-74 (88)
92 3ec2_A DNA replication protein 99.3 1.5E-11 5E-16 109.4 10.5 135 174-329 6-145 (180)
93 4akg_A Glutathione S-transfera 99.2 7.2E-11 2.5E-15 140.8 16.8 140 211-365 1266-1434(2695)
94 2wg5_A General control protein 99.2 2.2E-11 7.5E-16 99.0 8.0 101 50-170 8-108 (109)
95 2qen_A Walker-type ATPase; unk 99.2 2E-09 6.9E-14 104.9 21.5 194 170-393 4-247 (350)
96 2fna_A Conserved hypothetical 99.2 1.2E-09 4.3E-14 106.6 19.9 191 170-394 5-252 (357)
97 2dzn_B 26S protease regulatory 99.1 1.6E-11 5.6E-16 95.0 3.2 80 352-431 1-82 (82)
98 2w58_A DNAI, primosome compone 99.1 1.6E-10 5.4E-15 104.5 6.6 103 174-283 21-127 (202)
99 2kjq_A DNAA-related protein; s 99.0 4.7E-10 1.6E-14 96.9 6.9 101 211-342 35-141 (149)
100 4akg_A Glutathione S-transfera 99.0 2E-08 6.8E-13 120.1 21.0 183 212-419 645-857 (2695)
101 2vhj_A Ntpase P4, P4; non- hyd 98.9 2.1E-10 7.3E-15 110.5 2.3 120 209-333 120-241 (331)
102 2qgz_A Helicase loader, putati 98.9 8.6E-10 2.9E-14 106.9 5.0 70 212-283 152-226 (308)
103 2r2a_A Uncharacterized protein 98.8 5.4E-09 1.9E-13 94.6 7.1 127 213-351 6-155 (199)
104 3h43_A Proteasome-activating n 98.8 1.8E-08 6.3E-13 77.7 7.4 76 63-158 2-77 (85)
105 1tue_A Replication protein E1; 98.7 1.2E-08 4E-13 92.0 5.5 114 209-349 55-179 (212)
106 3m9b_A Proteasome-associated A 98.7 7.9E-08 2.7E-12 87.7 9.9 104 35-160 54-157 (251)
107 1jr3_D DNA polymerase III, del 98.6 3.1E-07 1.1E-11 89.9 13.3 175 211-419 17-209 (343)
108 1svm_A Large T antigen; AAA+ f 98.6 3.1E-08 1.1E-12 98.3 5.3 120 207-348 164-284 (377)
109 3cmu_A Protein RECA, recombina 98.5 1.3E-07 4.6E-12 109.8 9.8 123 201-323 1413-1560(2050)
110 3vkg_A Dynein heavy chain, cyt 98.5 1E-06 3.5E-11 106.3 16.4 126 213-359 605-750 (3245)
111 3vkg_A Dynein heavy chain, cyt 98.5 4.9E-07 1.7E-11 109.0 13.5 140 211-364 1303-1471(3245)
112 1ye8_A Protein THEP1, hypothet 98.5 6E-07 2E-11 79.6 10.4 124 214-354 2-168 (178)
113 1u0j_A DNA replication protein 98.4 2.7E-07 9.4E-12 86.7 7.2 120 211-360 103-249 (267)
114 2w0m_A SSO2452; RECA, SSPF, un 98.1 6.8E-06 2.3E-10 74.9 9.3 37 208-244 19-58 (235)
115 1n0w_A DNA repair protein RAD5 98.1 6.6E-06 2.2E-10 75.7 8.4 78 208-285 20-133 (243)
116 1z6t_A APAF-1, apoptotic prote 98.1 4.2E-05 1.4E-09 80.1 15.5 171 176-386 122-323 (591)
117 2cvh_A DNA repair and recombin 98.1 5E-06 1.7E-10 75.3 7.1 39 208-246 16-54 (220)
118 1xp8_A RECA protein, recombina 98.1 8.8E-06 3E-10 80.3 9.0 118 208-325 70-209 (366)
119 3hr8_A Protein RECA; alpha and 98.0 5E-06 1.7E-10 81.7 6.2 117 208-325 57-196 (356)
120 2zr9_A Protein RECA, recombina 98.0 4.8E-06 1.7E-10 81.7 6.1 78 208-285 57-153 (349)
121 2ehv_A Hypothetical protein PH 98.0 1.8E-05 6.1E-10 73.1 9.2 114 208-330 26-185 (251)
122 3sfz_A APAF-1, apoptotic pepti 97.9 7.9E-05 2.7E-09 84.3 14.9 172 175-386 121-323 (1249)
123 1g41_A Heat shock protein HSLU 97.9 4.3E-05 1.5E-09 77.0 11.1 158 257-419 238-433 (444)
124 1u94_A RECA protein, recombina 97.9 1.5E-05 5.2E-10 78.3 7.0 78 208-285 59-155 (356)
125 2z43_A DNA repair and recombin 97.9 1.1E-05 3.8E-10 78.3 5.9 77 208-285 103-217 (324)
126 1v5w_A DMC1, meiotic recombina 97.8 1.9E-05 6.4E-10 77.3 6.3 78 208-285 118-233 (343)
127 1qhx_A CPT, protein (chloramph 97.8 1.8E-05 6.2E-10 69.2 5.1 39 212-250 3-41 (178)
128 3io5_A Recombination and repai 97.8 2.7E-05 9.3E-10 74.7 6.2 78 208-286 25-126 (333)
129 3lda_A DNA repair protein RAD5 97.7 2.9E-05 9.8E-10 77.5 6.3 118 208-326 174-327 (400)
130 4a74_A DNA repair and recombin 97.7 6.5E-05 2.2E-09 68.3 8.2 28 208-235 21-48 (231)
131 2a5y_B CED-4; apoptosis; HET: 97.7 0.00032 1.1E-08 72.9 14.2 165 181-385 131-331 (549)
132 2orw_A Thymidine kinase; TMTK, 97.7 1.2E-05 4.1E-10 71.5 2.3 23 213-235 4-26 (184)
133 3cmu_A Protein RECA, recombina 97.7 3E-05 1E-09 90.5 6.1 126 201-326 718-868 (2050)
134 2dr3_A UPF0273 protein PH0284; 97.7 0.00016 5.4E-09 66.4 9.9 38 208-245 19-59 (247)
135 1pzn_A RAD51, DNA repair and r 97.7 5.2E-05 1.8E-09 74.4 6.8 30 207-236 126-155 (349)
136 3vaa_A Shikimate kinase, SK; s 97.7 2.2E-05 7.6E-10 70.4 3.6 43 210-254 23-65 (199)
137 2iut_A DNA translocase FTSK; n 97.6 0.00059 2E-08 70.6 14.0 75 272-359 344-420 (574)
138 2eyu_A Twitching motility prot 97.6 5.1E-05 1.7E-09 71.3 5.4 72 210-281 23-108 (261)
139 3upu_A ATP-dependent DNA helic 97.6 8.4E-05 2.9E-09 75.6 7.4 49 174-236 20-69 (459)
140 3trf_A Shikimate kinase, SK; a 97.6 3.3E-05 1.1E-09 68.1 3.4 41 212-254 5-45 (185)
141 2b8t_A Thymidine kinase; deoxy 97.6 0.00015 5.1E-09 66.4 7.9 71 212-283 12-101 (223)
142 2p5t_B PEZT; postsegregational 97.6 0.00021 7.1E-09 66.6 9.0 38 211-248 31-68 (253)
143 2r8r_A Sensor protein; KDPD, P 97.6 0.0016 5.5E-08 59.5 14.6 161 213-399 7-208 (228)
144 2i1q_A DNA repair and recombin 97.6 5.3E-05 1.8E-09 73.2 5.0 28 208-235 94-121 (322)
145 2rhm_A Putative kinase; P-loop 97.6 3E-05 1E-09 68.6 2.9 35 209-243 2-36 (193)
146 3jvv_A Twitching mobility prot 97.6 0.00014 4.8E-09 71.4 7.9 98 211-329 122-233 (356)
147 1nlf_A Regulatory protein REPA 97.5 8.2E-05 2.8E-09 70.4 5.3 28 208-235 26-53 (279)
148 3iij_A Coilin-interacting nucl 97.5 6.8E-05 2.3E-09 65.8 3.9 33 211-243 10-42 (180)
149 1kag_A SKI, shikimate kinase I 97.5 0.00024 8.3E-09 61.6 7.4 37 212-250 4-40 (173)
150 2i3b_A HCR-ntpase, human cance 97.5 0.00032 1.1E-08 62.5 8.3 24 213-236 2-25 (189)
151 1zp6_A Hypothetical protein AT 97.4 6.1E-05 2.1E-09 66.6 3.2 40 209-248 6-45 (191)
152 4gp7_A Metallophosphoesterase; 97.4 0.00012 4.1E-09 64.0 4.7 22 210-231 7-28 (171)
153 2ius_A DNA translocase FTSK; n 97.4 0.00057 2E-08 70.1 10.3 75 273-360 299-375 (512)
154 1y63_A LMAJ004144AAA protein; 97.4 7.5E-05 2.6E-09 66.0 3.3 33 211-243 9-42 (184)
155 3kb2_A SPBC2 prophage-derived 97.4 9.4E-05 3.2E-09 64.0 3.8 31 214-244 3-33 (173)
156 2iyv_A Shikimate kinase, SK; t 97.4 9.6E-05 3.3E-09 65.0 3.7 40 213-254 3-42 (184)
157 1gvn_B Zeta; postsegregational 97.4 0.00018 6E-09 68.6 5.6 38 211-248 32-69 (287)
158 2r6a_A DNAB helicase, replicat 97.3 0.00034 1.2E-08 71.0 8.0 39 207-245 198-240 (454)
159 1via_A Shikimate kinase; struc 97.3 9.7E-05 3.3E-09 64.5 3.4 36 213-250 5-40 (175)
160 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00035 1.2E-08 65.4 7.2 38 212-249 4-44 (260)
161 1g5t_A COB(I)alamin adenosyltr 97.3 0.0017 5.7E-08 58.0 11.1 116 213-347 29-178 (196)
162 2zts_A Putative uncharacterize 97.3 0.0007 2.4E-08 62.1 9.0 38 208-245 26-67 (251)
163 2ixe_A Antigen peptide transpo 97.3 0.0012 4.1E-08 62.2 10.6 27 209-235 42-68 (271)
164 2ze6_A Isopentenyl transferase 97.3 0.00016 5.4E-09 67.6 4.0 33 214-246 3-35 (253)
165 2cdn_A Adenylate kinase; phosp 97.3 0.00016 5.3E-09 64.7 3.7 32 212-243 20-51 (201)
166 1zuh_A Shikimate kinase; alpha 97.2 0.00014 4.9E-09 62.9 3.3 41 212-254 7-47 (168)
167 3t61_A Gluconokinase; PSI-biol 97.2 0.00021 7.1E-09 63.9 4.3 32 212-243 18-49 (202)
168 3cmw_A Protein RECA, recombina 97.2 0.00042 1.4E-08 80.1 7.6 118 209-326 1428-1567(1706)
169 2c95_A Adenylate kinase 1; tra 97.2 0.00011 3.9E-09 65.0 2.4 33 211-243 8-40 (196)
170 3tui_C Methionine import ATP-b 97.2 0.00027 9.3E-09 69.4 5.1 52 264-328 174-225 (366)
171 3lw7_A Adenylate kinase relate 97.2 0.00016 5.3E-09 62.4 3.0 29 214-243 3-31 (179)
172 1aky_A Adenylate kinase; ATP:A 97.2 0.00017 5.9E-09 65.4 3.4 33 211-243 3-35 (220)
173 1e6c_A Shikimate kinase; phosp 97.2 0.00019 6.5E-09 62.2 3.5 30 213-242 3-32 (173)
174 1tev_A UMP-CMP kinase; ploop, 97.2 0.00015 5E-09 64.0 2.8 36 212-249 3-38 (196)
175 3cm0_A Adenylate kinase; ATP-b 97.2 0.00015 5.3E-09 63.6 2.8 36 212-249 4-39 (186)
176 1zd8_A GTP:AMP phosphotransfer 97.2 0.00015 5.2E-09 66.2 2.7 33 211-243 6-38 (227)
177 3e1s_A Exodeoxyribonuclease V, 97.2 0.00034 1.1E-08 73.2 5.6 31 213-243 205-238 (574)
178 4g1u_C Hemin import ATP-bindin 97.2 0.0002 7E-09 67.4 3.6 26 210-235 35-60 (266)
179 3gfo_A Cobalt import ATP-bindi 97.1 0.00027 9.3E-09 66.8 4.4 54 264-330 154-207 (275)
180 3rlf_A Maltose/maltodextrin im 97.1 0.00022 7.7E-09 70.4 3.9 26 210-235 27-52 (381)
181 2ff7_A Alpha-hemolysin translo 97.1 0.00056 1.9E-08 63.6 6.2 26 210-235 33-58 (247)
182 1vpl_A ABC transporter, ATP-bi 97.1 0.00049 1.7E-08 64.4 5.8 27 209-235 38-64 (256)
183 2ewv_A Twitching motility prot 97.1 0.00021 7.3E-09 70.6 3.4 74 208-281 132-219 (372)
184 1kht_A Adenylate kinase; phosp 97.1 0.00018 6.1E-09 63.3 2.5 25 213-237 4-28 (192)
185 2vli_A Antibiotic resistance p 97.1 0.00022 7.4E-09 62.5 3.0 30 212-241 5-34 (183)
186 3dl0_A Adenylate kinase; phosp 97.1 0.00024 8.1E-09 64.2 3.3 30 214-243 2-31 (216)
187 1knq_A Gluconate kinase; ALFA/ 97.1 0.00025 8.4E-09 61.8 3.2 31 212-242 8-38 (175)
188 3fb4_A Adenylate kinase; psych 97.1 0.00025 8.5E-09 64.0 3.3 30 214-243 2-31 (216)
189 3bh0_A DNAB-like replicative h 97.1 0.0012 4.2E-08 63.5 8.4 38 207-244 63-103 (315)
190 2fz4_A DNA repair protein RAD2 97.1 0.0017 5.7E-08 59.8 9.0 33 213-245 109-141 (237)
191 4eun_A Thermoresistant glucoki 97.1 0.00033 1.1E-08 62.6 4.0 35 211-247 28-62 (200)
192 3be4_A Adenylate kinase; malar 97.1 0.00018 6.2E-09 65.3 2.3 32 212-243 5-36 (217)
193 2pt5_A Shikimate kinase, SK; a 97.1 0.00026 9E-09 61.0 3.3 30 214-243 2-31 (168)
194 3umf_A Adenylate kinase; rossm 97.1 0.00026 8.9E-09 64.5 3.4 40 210-251 27-66 (217)
195 2bwj_A Adenylate kinase 5; pho 97.1 0.00021 7.2E-09 63.4 2.7 37 212-250 12-48 (199)
196 2q6t_A DNAB replication FORK h 97.1 0.00087 3E-08 67.8 7.5 39 207-245 195-237 (444)
197 1ly1_A Polynucleotide kinase; 97.1 0.00043 1.5E-08 60.2 4.6 34 213-248 3-37 (181)
198 3tlx_A Adenylate kinase 2; str 97.1 0.00025 8.4E-09 65.7 3.1 33 211-243 28-60 (243)
199 1zak_A Adenylate kinase; ATP:A 97.1 0.0002 6.9E-09 65.1 2.5 32 211-242 4-35 (222)
200 1ak2_A Adenylate kinase isoenz 97.1 0.00029 1E-08 64.6 3.5 32 212-243 16-47 (233)
201 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00014 4.7E-09 71.1 1.3 30 213-242 25-54 (359)
202 1qf9_A UMP/CMP kinase, protein 97.0 0.00025 8.5E-09 62.4 2.8 32 212-243 6-37 (194)
203 1ukz_A Uridylate kinase; trans 97.0 0.00027 9.4E-09 63.1 3.0 31 213-243 16-46 (203)
204 3fvq_A Fe(3+) IONS import ATP- 97.0 0.00043 1.5E-08 67.9 4.5 26 210-235 28-53 (359)
205 2yyz_A Sugar ABC transporter, 97.0 0.00046 1.6E-08 67.7 4.7 26 210-235 27-52 (359)
206 3uie_A Adenylyl-sulfate kinase 97.0 0.00047 1.6E-08 61.6 4.3 38 211-248 24-64 (200)
207 3dm5_A SRP54, signal recogniti 97.0 0.0017 5.8E-08 65.3 8.7 195 211-421 99-342 (443)
208 2pez_A Bifunctional 3'-phospho 97.0 0.0005 1.7E-08 60.1 4.3 38 211-248 4-44 (179)
209 1z47_A CYSA, putative ABC-tran 97.0 0.00039 1.3E-08 68.1 3.9 26 210-235 39-64 (355)
210 2it1_A 362AA long hypothetical 97.0 0.00044 1.5E-08 67.9 4.3 26 210-235 27-52 (362)
211 1vt4_I APAF-1 related killer D 97.0 0.0037 1.3E-07 68.9 11.8 43 181-235 131-173 (1221)
212 3sr0_A Adenylate kinase; phosp 97.0 0.00045 1.5E-08 62.4 3.7 34 215-250 3-36 (206)
213 1tf7_A KAIC; homohexamer, hexa 96.9 0.0026 8.9E-08 65.7 9.7 110 208-327 277-417 (525)
214 3nh6_A ATP-binding cassette SU 96.9 0.00089 3E-08 64.2 5.8 27 209-235 77-103 (306)
215 1nks_A Adenylate kinase; therm 96.9 0.00045 1.6E-08 60.7 3.4 35 214-248 3-40 (194)
216 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00086 2.9E-08 65.1 5.7 72 211-282 170-251 (330)
217 3thx_B DNA mismatch repair pro 96.9 0.002 7E-08 70.5 9.1 109 209-330 670-799 (918)
218 3crm_A TRNA delta(2)-isopenten 96.9 0.00046 1.6E-08 66.6 3.6 33 213-245 6-38 (323)
219 3gd7_A Fusion complex of cysti 96.9 0.00083 2.8E-08 66.7 5.4 25 210-234 45-69 (390)
220 2v54_A DTMP kinase, thymidylat 96.9 0.00059 2E-08 60.7 3.9 34 211-244 3-37 (204)
221 3d31_A Sulfate/molybdate ABC t 96.9 0.00058 2E-08 66.7 4.2 26 210-235 24-49 (348)
222 2qor_A Guanylate kinase; phosp 96.9 0.00092 3.2E-08 59.9 5.1 29 209-237 9-37 (204)
223 1cke_A CK, MSSA, protein (cyti 96.9 0.00067 2.3E-08 61.5 4.1 30 213-242 6-35 (227)
224 1jjv_A Dephospho-COA kinase; P 96.9 0.0011 3.9E-08 59.2 5.5 33 214-249 4-36 (206)
225 1e4v_A Adenylate kinase; trans 96.8 0.00046 1.6E-08 62.4 2.8 30 214-243 2-31 (214)
226 2pbr_A DTMP kinase, thymidylat 96.8 0.0008 2.7E-08 59.2 4.3 30 215-244 3-35 (195)
227 3nwj_A ATSK2; P loop, shikimat 96.8 0.00051 1.8E-08 64.0 3.0 32 212-243 48-79 (250)
228 1vma_A Cell division protein F 96.8 0.0097 3.3E-07 57.0 12.0 73 210-282 102-197 (306)
229 2bbw_A Adenylate kinase 4, AK4 96.8 0.00079 2.7E-08 62.2 4.1 30 212-241 27-56 (246)
230 2nq2_C Hypothetical ABC transp 96.8 0.0037 1.3E-07 58.2 8.6 26 210-235 29-54 (253)
231 1v43_A Sugar-binding transport 96.8 0.0022 7.6E-08 63.2 7.4 26 210-235 35-60 (372)
232 2jaq_A Deoxyguanosine kinase; 96.8 0.00072 2.4E-08 60.0 3.5 29 214-242 2-30 (205)
233 3kl4_A SRP54, signal recogniti 96.8 0.0069 2.4E-07 60.8 11.0 195 211-421 96-342 (433)
234 2if2_A Dephospho-COA kinase; a 96.7 0.00055 1.9E-08 61.1 2.6 35 214-251 3-37 (204)
235 2xb4_A Adenylate kinase; ATP-b 96.7 0.00085 2.9E-08 61.1 3.7 34 215-250 3-36 (223)
236 2wwf_A Thymidilate kinase, put 96.7 0.00042 1.4E-08 62.1 1.6 30 211-240 9-38 (212)
237 3b6e_A Interferon-induced heli 96.7 0.0078 2.7E-07 53.5 9.9 23 213-235 49-71 (216)
238 3r20_A Cytidylate kinase; stru 96.7 0.00099 3.4E-08 61.3 3.9 31 212-242 9-39 (233)
239 2z0h_A DTMP kinase, thymidylat 96.7 0.0012 4E-08 58.3 4.2 30 215-244 3-35 (197)
240 1nn5_A Similar to deoxythymidy 96.7 0.00048 1.6E-08 61.8 1.6 28 211-238 8-35 (215)
241 3a8t_A Adenylate isopentenyltr 96.7 0.00064 2.2E-08 65.9 2.5 35 213-247 41-75 (339)
242 1tf7_A KAIC; homohexamer, hexa 96.6 0.0053 1.8E-07 63.3 9.3 113 209-330 36-188 (525)
243 3foz_A TRNA delta(2)-isopenten 96.6 0.00094 3.2E-08 63.9 3.4 35 212-246 10-44 (316)
244 1kgd_A CASK, peripheral plasma 96.6 0.001 3.5E-08 58.4 3.3 27 211-237 4-30 (180)
245 2xau_A PRE-mRNA-splicing facto 96.6 0.0042 1.4E-07 67.2 8.7 61 173-235 70-132 (773)
246 3thx_A DNA mismatch repair pro 96.6 0.005 1.7E-07 67.6 9.3 24 211-234 661-684 (934)
247 2grj_A Dephospho-COA kinase; T 96.6 0.0024 8.3E-08 56.9 5.6 38 213-252 13-50 (192)
248 3ake_A Cytidylate kinase; CMP 96.6 0.0011 3.7E-08 59.1 3.3 31 214-244 4-34 (208)
249 2plr_A DTMP kinase, probable t 96.6 0.001 3.5E-08 59.3 3.0 28 212-239 4-31 (213)
250 1q57_A DNA primase/helicase; d 96.5 0.003 1E-07 64.8 6.8 38 208-245 238-279 (503)
251 2j41_A Guanylate kinase; GMP, 96.5 0.0012 4E-08 58.8 3.3 27 210-236 4-30 (207)
252 3bgw_A DNAB-like replicative h 96.5 0.0043 1.5E-07 62.7 7.7 38 208-245 193-233 (444)
253 1uf9_A TT1252 protein; P-loop, 96.5 0.00093 3.2E-08 59.3 2.5 37 212-251 8-44 (203)
254 3tau_A Guanylate kinase, GMP k 96.5 0.0015 5.1E-08 58.8 3.9 27 211-237 7-33 (208)
255 1uj2_A Uridine-cytidine kinase 96.5 0.0012 4.2E-08 61.2 3.3 39 212-250 22-68 (252)
256 3tr0_A Guanylate kinase, GMP k 96.5 0.0013 4.3E-08 58.6 3.3 28 210-237 5-32 (205)
257 2yvu_A Probable adenylyl-sulfa 96.5 0.0021 7.1E-08 56.5 4.6 38 211-248 12-52 (186)
258 4a82_A Cystic fibrosis transme 96.5 0.0028 9.7E-08 66.2 6.4 27 209-235 364-390 (578)
259 1t6n_A Probable ATP-dependent 96.5 0.037 1.2E-06 49.5 13.1 24 212-235 51-74 (220)
260 1lvg_A Guanylate kinase, GMP k 96.5 0.0013 4.3E-08 58.8 3.2 27 211-237 3-29 (198)
261 4e22_A Cytidylate kinase; P-lo 96.5 0.0016 5.5E-08 60.5 3.9 31 211-241 26-56 (252)
262 1ex7_A Guanylate kinase; subst 96.5 0.002 6.9E-08 57.1 4.4 26 213-238 2-27 (186)
263 3b5x_A Lipid A export ATP-bind 96.5 0.004 1.4E-07 65.2 7.3 27 209-235 366-392 (582)
264 1vht_A Dephospho-COA kinase; s 96.5 0.0012 4.3E-08 59.5 3.0 30 212-242 4-33 (218)
265 1w36_D RECD, exodeoxyribonucle 96.4 0.0045 1.6E-07 65.1 7.4 23 213-235 165-187 (608)
266 3exa_A TRNA delta(2)-isopenten 96.4 0.0016 5.3E-08 62.5 3.5 34 213-246 4-37 (322)
267 1m7g_A Adenylylsulfate kinase; 96.4 0.0017 5.9E-08 58.4 3.6 38 211-248 24-65 (211)
268 2qt1_A Nicotinamide riboside k 96.4 0.00093 3.2E-08 59.8 1.8 32 211-242 20-52 (207)
269 1w4r_A Thymidine kinase; type 96.4 0.0029 9.8E-08 56.4 4.9 69 212-283 20-103 (195)
270 3qf4_B Uncharacterized ABC tra 96.4 0.0043 1.5E-07 65.1 7.0 28 208-235 377-404 (598)
271 2gxq_A Heat resistant RNA depe 96.4 0.015 5.1E-07 51.4 9.6 19 212-230 38-56 (207)
272 3zvl_A Bifunctional polynucleo 96.4 0.0033 1.1E-07 62.9 5.7 32 211-242 257-288 (416)
273 3d3q_A TRNA delta(2)-isopenten 96.3 0.0017 5.8E-08 63.0 3.2 33 213-245 8-40 (340)
274 2h92_A Cytidylate kinase; ross 96.3 0.0021 7.1E-08 58.0 3.6 31 213-243 4-34 (219)
275 1z6g_A Guanylate kinase; struc 96.3 0.0019 6.6E-08 58.6 3.4 28 209-236 20-47 (218)
276 3llm_A ATP-dependent RNA helic 96.3 0.0076 2.6E-07 55.1 7.4 22 212-233 76-97 (235)
277 3b60_A Lipid A export ATP-bind 96.3 0.004 1.4E-07 65.1 6.1 27 209-235 366-392 (582)
278 4a1f_A DNAB helicase, replicat 96.3 0.011 3.8E-07 57.3 8.8 37 208-244 42-81 (338)
279 1q3t_A Cytidylate kinase; nucl 96.3 0.0024 8.2E-08 58.5 3.9 32 211-242 15-46 (236)
280 4etp_A Kinesin-like protein KA 96.3 0.017 6E-07 57.3 10.3 45 32-76 14-58 (403)
281 2bdt_A BH3686; alpha-beta prot 96.3 0.0022 7.6E-08 56.4 3.5 34 214-248 4-37 (189)
282 3ney_A 55 kDa erythrocyte memb 96.3 0.0032 1.1E-07 56.3 4.3 27 211-237 18-44 (197)
283 2qmh_A HPR kinase/phosphorylas 96.2 0.0018 6E-08 58.0 2.4 33 212-245 34-66 (205)
284 3qf4_A ABC transporter, ATP-bi 96.2 0.004 1.4E-07 65.2 5.5 27 209-235 366-392 (587)
285 4f4c_A Multidrug resistance pr 96.2 0.0068 2.3E-07 69.4 7.8 29 208-236 440-468 (1321)
286 3u06_A Protein claret segregat 96.2 0.01 3.5E-07 59.1 8.1 19 211-229 138-156 (412)
287 1htw_A HI0065; nucleotide-bind 96.2 0.0023 8E-08 55.1 3.0 28 209-236 30-57 (158)
288 3a00_A Guanylate kinase, GMP k 96.2 0.0024 8.4E-08 56.2 3.1 25 213-237 2-26 (186)
289 1xx6_A Thymidine kinase; NESG, 96.2 0.0091 3.1E-07 53.1 6.9 71 212-283 8-93 (191)
290 1ltq_A Polynucleotide kinase; 96.2 0.0015 5.1E-08 62.0 1.9 34 213-248 3-37 (301)
291 3c8u_A Fructokinase; YP_612366 96.2 0.0018 6.1E-08 58.2 2.2 27 211-237 21-47 (208)
292 3eph_A TRNA isopentenyltransfe 96.1 0.002 6.7E-08 63.9 2.5 33 213-245 3-35 (409)
293 1wb9_A DNA mismatch repair pro 96.1 0.019 6.5E-07 62.1 10.4 25 211-235 606-630 (800)
294 2f6r_A COA synthase, bifunctio 96.1 0.002 6.7E-08 61.0 2.3 34 213-249 76-109 (281)
295 1qde_A EIF4A, translation init 96.1 0.042 1.4E-06 49.2 11.2 18 212-229 51-68 (224)
296 2px0_A Flagellar biosynthesis 96.1 0.0065 2.2E-07 57.9 6.0 35 211-245 104-142 (296)
297 1s96_A Guanylate kinase, GMP k 96.1 0.0028 9.4E-08 57.7 3.2 29 209-237 13-41 (219)
298 1rz3_A Hypothetical protein rb 96.1 0.0053 1.8E-07 54.7 4.9 36 211-246 21-59 (201)
299 2v9p_A Replication protein E1; 96.1 0.003 1E-07 60.5 3.4 34 207-240 121-154 (305)
300 1znw_A Guanylate kinase, GMP k 96.1 0.0029 9.9E-08 56.7 3.1 28 210-237 18-45 (207)
301 2oap_1 GSPE-2, type II secreti 96.1 0.0037 1.3E-07 64.2 4.2 71 211-281 259-343 (511)
302 4f4c_A Multidrug resistance pr 96.0 0.0067 2.3E-07 69.4 6.5 27 208-234 1101-1127(1321)
303 3asz_A Uridine kinase; cytidin 96.0 0.0022 7.6E-08 57.4 2.0 27 211-237 5-31 (211)
304 2axn_A 6-phosphofructo-2-kinas 96.0 0.016 5.3E-07 59.8 8.4 39 212-250 35-76 (520)
305 3j16_B RLI1P; ribosome recycli 96.0 0.021 7.3E-07 59.8 9.6 25 211-235 102-126 (608)
306 2yhs_A FTSY, cell division pro 95.9 0.048 1.7E-06 55.4 11.7 28 209-236 290-317 (503)
307 1vec_A ATP-dependent RNA helic 95.9 0.043 1.5E-06 48.4 10.2 19 212-230 40-58 (206)
308 1cr0_A DNA primase/helicase; R 95.9 0.0033 1.1E-07 59.6 2.7 29 207-235 30-58 (296)
309 2jeo_A Uridine-cytidine kinase 95.9 0.0031 1E-07 58.2 2.4 29 211-239 24-52 (245)
310 1sky_E F1-ATPase, F1-ATP synth 95.9 0.04 1.4E-06 55.6 10.6 25 211-235 150-174 (473)
311 4aby_A DNA repair protein RECN 95.8 0.029 9.9E-07 55.6 9.6 56 269-346 311-368 (415)
312 3ozx_A RNAse L inhibitor; ATP 95.8 0.018 6.3E-07 59.4 8.3 54 261-327 393-446 (538)
313 2v3c_C SRP54, signal recogniti 95.8 0.01 3.5E-07 59.6 6.1 35 211-245 98-135 (432)
314 3fdi_A Uncharacterized protein 95.8 0.0049 1.7E-07 55.2 3.3 30 213-242 7-36 (201)
315 3lnc_A Guanylate kinase, GMP k 95.7 0.0025 8.6E-08 58.1 1.2 27 210-236 25-52 (231)
316 3ice_A Transcription terminati 95.7 0.043 1.5E-06 54.0 9.9 117 211-327 173-325 (422)
317 1ewq_A DNA mismatch repair pro 95.7 0.022 7.4E-07 61.4 8.2 24 212-235 576-599 (765)
318 2va8_A SSO2462, SKI2-type heli 95.7 0.036 1.2E-06 59.2 10.0 23 210-232 44-66 (715)
319 1hv8_A Putative ATP-dependent 95.6 0.044 1.5E-06 52.6 9.7 22 213-234 45-66 (367)
320 3ozx_A RNAse L inhibitor; ATP 95.6 0.027 9.3E-07 58.2 8.6 49 263-326 148-196 (538)
321 3e70_C DPA, signal recognition 95.6 0.014 4.8E-07 56.4 6.0 27 210-236 127-153 (328)
322 3b9q_A Chloroplast SRP recepto 95.6 0.0069 2.4E-07 57.9 3.7 28 209-236 97-124 (302)
323 1j8m_F SRP54, signal recogniti 95.6 0.017 5.7E-07 55.1 6.4 72 212-283 98-192 (297)
324 4b3f_X DNA-binding protein smu 95.6 0.014 4.8E-07 61.8 6.3 36 183-233 191-226 (646)
325 3bor_A Human initiation factor 95.6 0.027 9.4E-07 51.3 7.6 19 212-230 67-85 (237)
326 2xxa_A Signal recognition part 95.5 0.02 6.9E-07 57.5 7.1 73 211-283 99-195 (433)
327 2pl3_A Probable ATP-dependent 95.5 0.045 1.6E-06 49.5 8.9 19 212-230 62-80 (236)
328 3gmt_A Adenylate kinase; ssgci 95.5 0.0078 2.7E-07 55.1 3.6 36 213-250 9-44 (230)
329 4eaq_A DTMP kinase, thymidylat 95.5 0.0067 2.3E-07 55.5 3.2 27 211-237 25-51 (229)
330 2o8b_B DNA mismatch repair pro 95.5 0.02 6.9E-07 63.6 7.5 22 212-233 789-810 (1022)
331 3iuy_A Probable ATP-dependent 95.5 0.026 8.8E-07 50.9 7.1 19 212-230 57-75 (228)
332 1x6v_B Bifunctional 3'-phospho 95.5 0.0085 2.9E-07 62.9 4.3 37 212-248 52-91 (630)
333 2j37_W Signal recognition part 95.5 0.015 5.1E-07 59.5 6.0 73 211-283 100-195 (504)
334 1c9k_A COBU, adenosylcobinamid 95.5 0.0064 2.2E-07 53.5 2.8 32 215-247 2-33 (180)
335 1q0u_A Bstdead; DEAD protein, 95.5 0.045 1.6E-06 49.0 8.6 18 213-230 42-59 (219)
336 1ls1_A Signal recognition part 95.5 0.024 8.4E-07 53.8 7.0 73 211-283 97-192 (295)
337 2iw3_A Elongation factor 3A; a 95.4 0.025 8.4E-07 62.3 7.8 26 209-234 458-483 (986)
338 3tif_A Uncharacterized ABC tra 95.4 0.0042 1.4E-07 57.1 1.4 27 209-235 28-54 (235)
339 1zu4_A FTSY; GTPase, signal re 95.4 0.026 9E-07 54.3 6.9 36 210-245 103-141 (320)
340 2cbz_A Multidrug resistance-as 95.4 0.0045 1.5E-07 57.0 1.4 27 209-235 28-54 (237)
341 2og2_A Putative signal recogni 95.3 0.0091 3.1E-07 58.5 3.6 28 209-236 154-181 (359)
342 1gtv_A TMK, thymidylate kinase 95.3 0.0031 1.1E-07 56.4 0.1 23 215-237 3-25 (214)
343 1a7j_A Phosphoribulokinase; tr 95.3 0.0077 2.6E-07 57.2 2.8 36 213-248 6-44 (290)
344 3bk7_A ABC transporter ATP-bin 95.2 0.039 1.3E-06 57.8 8.4 26 210-235 380-405 (607)
345 3g5u_A MCG1178, multidrug resi 95.2 0.014 4.9E-07 66.6 5.3 28 208-235 412-439 (1284)
346 1p9r_A General secretion pathw 95.2 0.019 6.6E-07 57.3 5.6 27 211-237 166-192 (418)
347 1np6_A Molybdopterin-guanine d 95.2 0.011 3.6E-07 51.8 3.2 26 211-236 5-30 (174)
348 1m8p_A Sulfate adenylyltransfe 95.2 0.033 1.1E-06 58.0 7.5 38 212-249 396-437 (573)
349 1s2m_A Putative ATP-dependent 95.2 0.063 2.1E-06 52.5 9.2 21 213-233 59-79 (400)
350 3tbk_A RIG-I helicase domain; 95.1 0.23 7.8E-06 50.5 13.7 23 213-235 20-42 (555)
351 1b0u_A Histidine permease; ABC 95.1 0.0059 2E-07 57.1 1.5 26 210-235 30-55 (262)
352 2pcj_A ABC transporter, lipopr 95.1 0.0042 1.4E-07 56.7 0.4 26 210-235 28-53 (224)
353 3aez_A Pantothenate kinase; tr 95.1 0.0095 3.2E-07 57.2 2.9 28 210-237 88-115 (312)
354 1sgw_A Putative ABC transporte 95.1 0.0057 2E-07 55.4 1.3 26 210-235 33-58 (214)
355 2i4i_A ATP-dependent RNA helic 95.1 0.092 3.1E-06 51.5 10.2 18 212-229 52-69 (417)
356 1xti_A Probable ATP-dependent 95.1 0.28 9.6E-06 47.5 13.6 23 212-234 45-67 (391)
357 3dkp_A Probable ATP-dependent 95.1 0.082 2.8E-06 48.1 9.1 18 212-229 66-83 (245)
358 3g5u_A MCG1178, multidrug resi 95.0 0.027 9.2E-07 64.3 6.8 26 209-234 1056-1081(1284)
359 2zu0_C Probable ATP-dependent 95.0 0.0079 2.7E-07 56.4 2.0 26 210-235 44-69 (267)
360 3p32_A Probable GTPase RV1496/ 95.0 0.041 1.4E-06 53.6 7.2 25 212-236 79-103 (355)
361 2ghi_A Transport protein; mult 95.0 0.0066 2.2E-07 56.7 1.4 27 209-235 43-69 (260)
362 2onk_A Molybdate/tungstate ABC 95.0 0.0075 2.6E-07 55.6 1.8 26 209-235 22-47 (240)
363 3fe2_A Probable ATP-dependent 95.0 0.077 2.6E-06 48.3 8.7 19 212-230 66-84 (242)
364 2qm8_A GTPase/ATPase; G protei 95.0 0.035 1.2E-06 53.8 6.6 25 211-235 54-78 (337)
365 1mv5_A LMRA, multidrug resista 95.0 0.0057 2E-07 56.5 1.0 27 209-235 25-51 (243)
366 3j16_B RLI1P; ribosome recycli 95.0 0.063 2.2E-06 56.2 9.0 22 214-235 380-401 (608)
367 2v6i_A RNA helicase; membrane, 95.0 0.07 2.4E-06 53.4 9.0 17 213-229 3-19 (431)
368 2ffh_A Protein (FFH); SRP54, s 95.0 0.064 2.2E-06 53.6 8.6 73 211-283 97-192 (425)
369 3b85_A Phosphate starvation-in 95.0 0.0055 1.9E-07 55.3 0.8 25 211-235 21-45 (208)
370 3hdt_A Putative kinase; struct 95.0 0.012 4E-07 53.7 3.0 30 213-242 15-44 (223)
371 2olj_A Amino acid ABC transpor 95.0 0.0069 2.4E-07 56.7 1.5 26 210-235 48-73 (263)
372 1rj9_A FTSY, signal recognitio 95.0 0.012 4E-07 56.3 3.1 26 211-236 101-126 (304)
373 3lxx_A GTPase IMAP family memb 95.0 0.032 1.1E-06 50.9 5.9 23 213-235 30-52 (239)
374 1g6h_A High-affinity branched- 95.0 0.006 2E-07 56.9 1.0 51 266-330 166-216 (257)
375 3ber_A Probable ATP-dependent 95.0 0.074 2.5E-06 48.9 8.5 19 212-230 80-98 (249)
376 2zj8_A DNA helicase, putative 94.9 0.05 1.7E-06 58.1 8.3 20 211-230 38-57 (720)
377 2d2e_A SUFC protein; ABC-ATPas 94.9 0.0071 2.4E-07 56.1 1.4 26 210-235 27-52 (250)
378 2pze_A Cystic fibrosis transme 94.9 0.0063 2.1E-07 55.7 1.0 26 210-235 32-57 (229)
379 1odf_A YGR205W, hypothetical 3 94.9 0.016 5.4E-07 55.0 3.8 27 211-237 30-56 (290)
380 2j9r_A Thymidine kinase; TK1, 94.9 0.055 1.9E-06 48.8 7.1 30 214-243 30-62 (214)
381 1ji0_A ABC transporter; ATP bi 94.9 0.0064 2.2E-07 56.0 0.9 26 210-235 30-55 (240)
382 1sq5_A Pantothenate kinase; P- 94.8 0.011 3.7E-07 56.6 2.5 27 211-237 79-105 (308)
383 1bif_A 6-phosphofructo-2-kinas 94.8 0.14 4.8E-06 51.8 10.9 37 212-248 39-78 (469)
384 2yz2_A Putative ABC transporte 94.8 0.0077 2.6E-07 56.4 1.4 52 265-330 150-201 (266)
385 2qi9_C Vitamin B12 import ATP- 94.8 0.007 2.4E-07 56.2 1.0 27 210-236 24-50 (249)
386 3tqc_A Pantothenate kinase; bi 94.8 0.024 8.2E-07 54.6 4.7 26 212-237 92-117 (321)
387 3tqf_A HPR(Ser) kinase; transf 94.7 0.011 3.6E-07 51.7 1.9 29 212-241 16-44 (181)
388 3pey_A ATP-dependent RNA helic 94.7 0.13 4.4E-06 49.8 9.9 22 211-232 43-64 (395)
389 2ihy_A ABC transporter, ATP-bi 94.7 0.0078 2.7E-07 56.8 1.0 26 210-235 45-70 (279)
390 3h1t_A Type I site-specific re 94.7 0.043 1.5E-06 57.1 6.7 23 213-235 199-221 (590)
391 3t1o_A Gliding protein MGLA; G 94.6 0.065 2.2E-06 46.4 6.9 24 213-236 15-38 (198)
392 2ged_A SR-beta, signal recogni 94.6 0.028 9.6E-07 48.9 4.5 25 211-235 47-71 (193)
393 2gza_A Type IV secretion syste 94.6 0.0081 2.8E-07 58.9 1.0 73 210-282 173-263 (361)
394 1wrb_A DJVLGB; RNA helicase, D 94.6 0.055 1.9E-06 49.6 6.7 18 213-230 61-78 (253)
395 3ux8_A Excinuclease ABC, A sub 94.6 0.059 2E-06 57.2 7.8 54 272-346 565-618 (670)
396 2j0s_A ATP-dependent RNA helic 94.6 0.086 2.9E-06 51.7 8.5 22 212-233 74-95 (410)
397 3vkw_A Replicase large subunit 94.6 0.037 1.3E-06 55.5 5.7 23 213-235 162-184 (446)
398 3ly5_A ATP-dependent RNA helic 94.5 0.078 2.7E-06 49.1 7.6 18 213-230 92-109 (262)
399 1g29_1 MALK, maltose transport 94.5 0.011 3.6E-07 58.3 1.4 26 210-235 27-52 (372)
400 1xjc_A MOBB protein homolog; s 94.4 0.021 7.2E-07 49.6 3.1 24 213-236 5-28 (169)
401 3i5x_A ATP-dependent RNA helic 94.4 0.22 7.5E-06 51.2 11.4 17 212-228 111-127 (563)
402 3kta_A Chromosome segregation 94.4 0.019 6.6E-07 49.8 2.9 25 213-237 27-51 (182)
403 3lxw_A GTPase IMAP family memb 94.4 0.046 1.6E-06 50.3 5.5 24 212-235 21-44 (247)
404 3fmo_B ATP-dependent RNA helic 94.3 0.1 3.4E-06 49.5 8.0 19 211-229 130-148 (300)
405 3eiq_A Eukaryotic initiation f 94.3 0.11 3.8E-06 50.8 8.6 20 212-231 77-96 (414)
406 3cr8_A Sulfate adenylyltranfer 94.3 0.012 4E-07 61.0 1.4 39 211-249 368-410 (552)
407 2f9l_A RAB11B, member RAS onco 94.3 0.02 7E-07 50.4 2.8 23 213-235 6-28 (199)
408 1p5z_B DCK, deoxycytidine kina 94.2 0.0098 3.3E-07 55.3 0.5 27 211-237 23-49 (263)
409 1nrj_B SR-beta, signal recogni 94.2 0.025 8.6E-07 50.4 3.3 26 211-236 11-36 (218)
410 2ocp_A DGK, deoxyguanosine kin 94.2 0.02 6.8E-07 52.4 2.6 25 213-237 3-27 (241)
411 1oxx_K GLCV, glucose, ABC tran 94.2 0.0092 3.2E-07 58.3 0.3 26 210-235 29-54 (353)
412 2bbs_A Cystic fibrosis transme 94.2 0.012 4E-07 56.0 0.9 27 209-235 61-87 (290)
413 1lw7_A Transcriptional regulat 94.2 0.016 5.6E-07 56.7 2.0 28 212-239 170-197 (365)
414 3e2i_A Thymidine kinase; Zn-bi 94.1 0.19 6.4E-06 45.3 8.8 22 213-234 29-51 (219)
415 3sop_A Neuronal-specific septi 94.1 0.017 5.9E-07 54.1 2.1 22 214-235 4-25 (270)
416 3tmk_A Thymidylate kinase; pho 94.1 0.036 1.2E-06 50.1 4.2 29 211-239 4-32 (216)
417 4a2p_A RIG-I, retinoic acid in 94.1 0.41 1.4E-05 48.7 12.7 22 213-234 23-44 (556)
418 1oix_A RAS-related protein RAB 94.1 0.02 6.9E-07 50.2 2.4 23 214-236 31-53 (191)
419 2npi_A Protein CLP1; CLP1-PCF1 94.1 0.019 6.6E-07 58.1 2.5 28 208-235 134-161 (460)
420 2pjz_A Hypothetical protein ST 94.1 0.014 4.7E-07 54.6 1.3 27 209-236 28-54 (263)
421 2dyk_A GTP-binding protein; GT 94.0 0.027 9.1E-07 47.2 2.9 22 214-235 3-24 (161)
422 1fuu_A Yeast initiation factor 94.0 0.13 4.6E-06 49.8 8.3 18 213-230 59-76 (394)
423 2p67_A LAO/AO transport system 94.0 0.083 2.9E-06 51.1 6.7 25 211-235 55-79 (341)
424 3fht_A ATP-dependent RNA helic 94.0 0.15 5.1E-06 49.8 8.7 18 212-229 64-81 (412)
425 2ykg_A Probable ATP-dependent 94.0 0.26 8.7E-06 52.1 11.1 22 213-234 29-50 (696)
426 2gk6_A Regulator of nonsense t 94.0 0.04 1.4E-06 58.0 4.7 23 213-235 196-218 (624)
427 3v9p_A DTMP kinase, thymidylat 93.9 0.027 9.2E-07 51.4 2.8 25 212-236 25-49 (227)
428 1z2a_A RAS-related protein RAB 93.9 0.029 9.8E-07 47.3 2.8 23 213-235 6-28 (168)
429 2fwr_A DNA repair protein RAD2 93.9 0.052 1.8E-06 54.7 5.2 34 213-246 109-142 (472)
430 2orv_A Thymidine kinase; TP4A 93.9 0.43 1.5E-05 43.4 10.7 68 213-283 20-102 (234)
431 4i1u_A Dephospho-COA kinase; s 93.9 0.031 1.1E-06 50.4 3.1 31 213-244 10-40 (210)
432 1wp9_A ATP-dependent RNA helic 93.8 0.098 3.4E-06 51.9 7.1 32 214-245 25-60 (494)
433 3def_A T7I23.11 protein; chlor 93.8 0.071 2.4E-06 49.4 5.6 24 212-235 36-59 (262)
434 3sqw_A ATP-dependent RNA helic 93.8 0.34 1.2E-05 50.1 11.4 18 212-229 60-77 (579)
435 3l9o_A ATP-dependent RNA helic 93.8 0.16 5.3E-06 57.1 9.2 24 211-234 198-221 (1108)
436 2wji_A Ferrous iron transport 93.8 0.029 1E-06 47.7 2.7 23 213-235 4-26 (165)
437 2qag_B Septin-6, protein NEDD5 93.8 0.028 9.4E-07 56.2 2.8 25 211-235 39-65 (427)
438 1kao_A RAP2A; GTP-binding prot 93.8 0.032 1.1E-06 46.8 2.9 23 213-235 4-26 (167)
439 2db3_A ATP-dependent RNA helic 93.7 0.2 6.8E-06 50.0 9.1 18 211-228 92-109 (434)
440 2zej_A Dardarin, leucine-rich 93.7 0.025 8.7E-07 49.1 2.2 21 214-234 4-24 (184)
441 1upt_A ARL1, ADP-ribosylation 93.7 0.032 1.1E-06 47.2 2.8 25 211-235 6-30 (171)
442 4edh_A DTMP kinase, thymidylat 93.6 0.027 9.1E-07 50.9 2.2 26 212-237 6-31 (213)
443 2lkc_A Translation initiation 93.6 0.036 1.2E-06 47.3 3.0 25 211-235 7-31 (178)
444 1u8z_A RAS-related protein RAL 93.6 0.035 1.2E-06 46.6 2.8 23 213-235 5-27 (168)
445 1ek0_A Protein (GTP-binding pr 93.6 0.035 1.2E-06 46.7 2.8 23 213-235 4-26 (170)
446 3fmp_B ATP-dependent RNA helic 93.6 0.13 4.6E-06 51.7 7.6 19 211-229 130-148 (479)
447 1z0j_A RAB-22, RAS-related pro 93.6 0.036 1.2E-06 46.7 2.9 23 213-235 7-29 (170)
448 1g8f_A Sulfate adenylyltransfe 93.5 0.028 9.6E-07 57.5 2.5 27 212-238 395-421 (511)
449 2nzj_A GTP-binding protein REM 93.5 0.035 1.2E-06 47.2 2.7 23 213-235 5-27 (175)
450 2ce2_X GTPase HRAS; signaling 93.5 0.031 1E-06 46.8 2.3 22 214-235 5-26 (166)
451 2dpy_A FLII, flagellum-specifi 93.5 0.05 1.7E-06 54.7 4.2 29 211-239 156-184 (438)
452 1wms_A RAB-9, RAB9, RAS-relate 93.5 0.037 1.3E-06 47.1 2.9 23 213-235 8-30 (177)
453 1z08_A RAS-related protein RAB 93.5 0.039 1.3E-06 46.6 2.9 23 213-235 7-29 (170)
454 3o8b_A HCV NS3 protease/helica 93.4 0.47 1.6E-05 50.0 11.6 32 212-243 232-263 (666)
455 2gks_A Bifunctional SAT/APS ki 93.4 0.096 3.3E-06 54.1 6.3 38 212-249 372-412 (546)
456 2wjg_A FEOB, ferrous iron tran 93.4 0.034 1.2E-06 48.1 2.5 23 213-235 8-30 (188)
457 1ky3_A GTP-binding protein YPT 93.4 0.04 1.4E-06 47.1 2.9 24 212-235 8-31 (182)
458 2erx_A GTP-binding protein DI- 93.4 0.036 1.2E-06 46.7 2.6 23 213-235 4-26 (172)
459 1gm5_A RECG; helicase, replica 93.3 0.35 1.2E-05 52.1 10.7 24 211-234 388-411 (780)
460 2obl_A ESCN; ATPase, hydrolase 93.3 0.044 1.5E-06 53.3 3.4 29 211-239 70-98 (347)
461 1c1y_A RAS-related protein RAP 93.3 0.042 1.4E-06 46.2 2.8 23 213-235 4-26 (167)
462 1r2q_A RAS-related protein RAB 93.3 0.042 1.4E-06 46.2 2.8 23 213-235 7-29 (170)
463 3lv8_A DTMP kinase, thymidylat 93.3 0.038 1.3E-06 50.8 2.7 25 212-236 27-51 (236)
464 2f1r_A Molybdopterin-guanine d 93.3 0.019 6.5E-07 50.0 0.6 25 213-237 3-27 (171)
465 1pui_A ENGB, probable GTP-bind 93.3 0.015 5.1E-07 51.5 -0.0 28 208-235 22-49 (210)
466 1r8s_A ADP-ribosylation factor 93.3 0.042 1.4E-06 46.1 2.8 22 214-235 2-23 (164)
467 2p5s_A RAS and EF-hand domain 93.2 0.036 1.2E-06 48.7 2.4 25 211-235 27-51 (199)
468 2p6r_A Afuhel308 helicase; pro 93.2 0.077 2.6E-06 56.5 5.4 20 212-231 40-59 (702)
469 3q85_A GTP-binding protein REM 93.2 0.04 1.4E-06 46.5 2.7 21 214-234 4-24 (169)
470 1g16_A RAS-related protein SEC 93.2 0.036 1.2E-06 46.7 2.3 23 213-235 4-26 (170)
471 1f2t_A RAD50 ABC-ATPase; DNA d 93.2 0.043 1.5E-06 46.5 2.7 24 213-236 24-47 (149)
472 2hxs_A RAB-26, RAS-related pro 93.2 0.043 1.5E-06 46.8 2.7 23 213-235 7-29 (178)
473 2gj8_A MNME, tRNA modification 93.1 0.029 9.9E-07 48.3 1.6 24 212-235 4-27 (172)
474 3bc1_A RAS-related protein RAB 93.1 0.044 1.5E-06 47.3 2.8 23 213-235 12-34 (195)
475 3m91_A Proteasome-associated A 93.1 0.46 1.6E-05 32.2 7.1 43 34-76 8-50 (51)
476 3iev_A GTP-binding protein ERA 93.1 0.14 4.8E-06 48.7 6.5 24 212-235 10-33 (308)
477 2wjy_A Regulator of nonsense t 93.1 0.068 2.3E-06 57.9 4.7 23 213-235 372-394 (800)
478 4dsu_A GTPase KRAS, isoform 2B 93.1 0.047 1.6E-06 47.0 2.9 23 213-235 5-27 (189)
479 2f7s_A C25KG, RAS-related prot 93.1 0.43 1.5E-05 42.0 9.4 23 213-235 26-48 (217)
480 1z0f_A RAB14, member RAS oncog 93.0 0.048 1.7E-06 46.4 2.8 23 213-235 16-38 (179)
481 2vp4_A Deoxynucleoside kinase; 93.0 0.028 9.7E-07 51.1 1.4 25 211-235 19-43 (230)
482 3con_A GTPase NRAS; structural 92.9 0.049 1.7E-06 47.2 2.8 23 213-235 22-44 (190)
483 1svi_A GTP-binding protein YSX 92.9 0.047 1.6E-06 47.4 2.7 25 211-235 22-46 (195)
484 2oil_A CATX-8, RAS-related pro 92.9 0.049 1.7E-06 47.3 2.8 23 213-235 26-48 (193)
485 3clv_A RAB5 protein, putative; 92.9 0.051 1.7E-06 47.2 2.9 24 212-235 7-30 (208)
486 2atv_A RERG, RAS-like estrogen 92.9 0.048 1.6E-06 47.7 2.7 25 211-235 27-51 (196)
487 2efe_B Small GTP-binding prote 92.8 0.054 1.8E-06 46.3 2.9 23 213-235 13-35 (181)
488 2a9k_A RAS-related protein RAL 92.8 0.053 1.8E-06 46.5 2.8 23 213-235 19-41 (187)
489 2y8e_A RAB-protein 6, GH09086P 92.8 0.044 1.5E-06 46.6 2.3 23 213-235 15-37 (179)
490 2www_A Methylmalonic aciduria 92.8 0.091 3.1E-06 51.1 4.8 24 212-235 74-97 (349)
491 3tw8_B RAS-related protein RAB 92.8 0.049 1.7E-06 46.4 2.6 22 213-234 10-31 (181)
492 4ag6_A VIRB4 ATPase, type IV s 92.8 0.099 3.4E-06 51.4 5.1 34 211-244 34-70 (392)
493 4a2q_A RIG-I, retinoic acid in 92.8 0.96 3.3E-05 48.8 13.3 23 213-235 264-286 (797)
494 3q72_A GTP-binding protein RAD 92.8 0.045 1.5E-06 46.1 2.3 22 213-234 3-24 (166)
495 2fn4_A P23, RAS-related protei 92.8 0.046 1.6E-06 46.6 2.4 23 213-235 10-32 (181)
496 1m7b_A RND3/RHOE small GTP-bin 92.8 0.045 1.6E-06 47.3 2.3 23 213-235 8-30 (184)
497 3ld9_A DTMP kinase, thymidylat 92.8 0.053 1.8E-06 49.3 2.8 27 212-238 21-47 (223)
498 3kkq_A RAS-related protein M-R 92.7 0.057 2E-06 46.4 2.8 23 213-235 19-41 (183)
499 2e87_A Hypothetical protein PH 92.7 0.36 1.2E-05 46.8 8.9 25 211-235 166-190 (357)
500 2rcn_A Probable GTPase ENGC; Y 92.6 0.054 1.9E-06 52.9 2.9 27 211-237 214-240 (358)
No 1
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-68 Score=540.69 Aligned_cols=415 Identities=69% Similarity=1.088 Sum_probs=357.7
Q ss_pred cccchhhHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCc
Q psy15151 17 GEESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDT 96 (431)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (431)
+.+.+.+++.++..++++.|.+.++.++..++.++.+++.+.+.++++++..++++..++.+|+.++++.+.+|......
T Consensus 14 ~~~~l~~ei~~~~~~~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p~~v~~~~e~~d~~~~~~ 93 (434)
T 4b4t_M 14 GDDELDQEILNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIED 93 (434)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCEEEECCC--------
T ss_pred CcchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhhhhhhccchhhh
Confidence 45677888888888889999999999999999999999999999999999999999999999999999999887643211
Q ss_pred ------cccccccccccccCCcEEEEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcc
Q psy15151 97 ------EEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVD 170 (431)
Q Consensus 97 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 170 (431)
...+..........+..++++.++++.+++.+.+.++++.++||+.|++++.++.++..+|...++.+..|...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~ 173 (434)
T 4b4t_M 94 KENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVD 173 (434)
T ss_dssp -------------------CCSEEEEEETTSCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEE
T ss_pred hccchhhhhhhhhhhhhcccCceEEEEcCCCCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccC
Confidence 22233444555566788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 171 ~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
+.|+++|++|+|++++++.|.+.+.+|+.+|+.|.++|+++|+|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 251 MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 251 ~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
+|+|++++.++.+|..|+..+||||||||+|.++++|.++..+++.+..+++.++|+.++++.+..+|+||+|||+|+.+
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999999999998888888889999999999999999999999999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Q psy15151 331 DPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHE 410 (431)
Q Consensus 331 ~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~e 410 (431)
||+++||||||+.|+|+.|+.++|.+||+.+++++.+..++++..||..|.||||+||.++|++|++.|+++++..|+.+
T Consensus 334 D~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~ 413 (434)
T 4b4t_M 334 DPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHE 413 (434)
T ss_dssp CTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHH
T ss_pred CHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCC
Q psy15151 411 DFMDAIMEVQAKKKANLNYYA 431 (431)
Q Consensus 411 d~~~Al~~~~~~~~~~~~~~~ 431 (431)
||..|+++++++++..+.|||
T Consensus 414 Df~~Al~~v~~~~~~~i~~Ya 434 (434)
T 4b4t_M 414 DFVEGISEVQARKSKSVSFYA 434 (434)
T ss_dssp HHHHHHHSCSSSCCCCCCCCC
T ss_pred HHHHHHHHHhCCCCcCccccC
Confidence 999999999999999999997
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-66 Score=515.71 Aligned_cols=372 Identities=44% Similarity=0.731 Sum_probs=353.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccCCcE
Q psy15151 34 NSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKC 113 (431)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (431)
..++++++.++....+.+.+++.+.+.+++++..++++++.++..|..++++.+.++. ..
T Consensus 24 ~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~--------------------~~ 83 (405)
T 4b4t_J 24 EQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSD--------------------KK 83 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTT--------------------SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecC--------------------Ce
Confidence 3466777777777777888888888888899999999999999999999999999887 36
Q ss_pred EEEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHH
Q psy15151 114 AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEA 193 (431)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~ 193 (431)
.+++.+.++.+++.+.+.++.+.++||+.|.+++.++.+...+|...++.+..|...+.|+++|+||+|++++++.|.+.
T Consensus 84 ~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~ 163 (405)
T 4b4t_J 84 VLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEV 163 (405)
T ss_dssp EEEEESSSCEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHH
T ss_pred EEEEeCCCCEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHHH
Confidence 78888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCe
Q psy15151 194 VVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPA 273 (431)
Q Consensus 194 i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~ 273 (431)
+.+|+.+|+.|.++|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|+..+||
T Consensus 164 v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~ 243 (405)
T 4b4t_J 164 IELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPS 243 (405)
T ss_dssp THHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHH
Q psy15151 274 IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 353 (431)
Q Consensus 274 vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~ 353 (431)
||||||||.++++|.+...+++.+..+++.++|+.++++....+|+||+|||+|+.+||+++||||||+.|+|++|+.++
T Consensus 244 IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~ 323 (405)
T 4b4t_J 244 IIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAA 323 (405)
T ss_dssp EEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred eEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHH
Confidence 99999999999999888777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhc
Q psy15151 354 RARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKA 425 (431)
Q Consensus 354 r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~~ 425 (431)
|.+||+.+++++++..++|+..||..|.||||+||.++|++|++.|+++++..|+++||..|++++.++...
T Consensus 324 R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 324 RAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp HHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999876543
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-65 Score=508.55 Aligned_cols=359 Identities=47% Similarity=0.787 Sum_probs=341.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccCCcEEEEecCCCceEEE
Q psy15151 47 MKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFL 126 (431)
Q Consensus 47 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (431)
+++++-+.++.++.++++.++.++++++++..|+.++++.+.+|. ..++++.++++.+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~--------------------~~~iv~~~~~~~~~v 130 (437)
T 4b4t_I 71 LEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDD--------------------DHAIVTSPTMPDYYV 130 (437)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEEECTT--------------------SEEEEECSSSCCCEE
T ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHHHhhcCCCceeEEEEEEecC--------------------CEEEEEcCCCCEEEE
Confidence 446666666777888889999999999999999999999999998 488999999999999
Q ss_pred eecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHh
Q psy15151 127 PVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVN 206 (431)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~ 206 (431)
.+.+.++++.++||+.|.+++.++.+++.++...++.+..|.+.+.|+++|+||+|++++++.|.+.+.+|+.+|+.|..
T Consensus 131 ~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~ 210 (437)
T 4b4t_I 131 SILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEE 210 (437)
T ss_dssp ECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred ecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
+|+++|+|+|||||||||||++|+++|++++.+|+.+++++++++|+|++++.++.+|..|+..+||||||||||.++.+
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~ 290 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTK 290 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCC
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCC
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMN 366 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~ 366 (431)
|.+++..++.+..+++.++|+.++++....+++||+|||+++.|||+++||||||+.|+|+.|+.++|.+||+.+++++.
T Consensus 291 R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~ 370 (437)
T 4b4t_I 291 RYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN 370 (437)
T ss_dssp CSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC
Confidence 98888778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhc
Q psy15151 367 VSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKA 425 (431)
Q Consensus 367 ~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~~ 425 (431)
+..++|++.||..+.||||+||.++|++|++.|+++++..|+++||..|++++.++...
T Consensus 371 l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 371 LSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp BCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHCC
T ss_pred CCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999999999999999999999999999999999987543
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-64 Score=508.93 Aligned_cols=381 Identities=38% Similarity=0.704 Sum_probs=359.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCcccccccccccccc
Q psy15151 30 TDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQR 109 (431)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (431)
..+++.++++++.+++.|..|.+.++++.+.+++++..++++++.++..|+.++++.+.+|.
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~------------------ 105 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQ------------------ 105 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCEEEEEEEEEEET------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeEEEEEccC------------------
Confidence 35677889999999999999999999999999999999999999999999999999999987
Q ss_pred CCcEEEEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHH
Q psy15151 110 KGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQE 189 (431)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~ 189 (431)
...+++.++++.+++.+.+.++.+.+.||+.|.+++.++.++..+|.+.++.+..|.+.+.|+++|+||+|++++++.
T Consensus 106 --~~~iv~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~ 183 (428)
T 4b4t_K 106 --NTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQE 183 (428)
T ss_dssp --TEEEEEETTSCEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHH
T ss_pred --CeeEEecCCCCEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHh
Q psy15151 190 LIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKE 269 (431)
Q Consensus 190 l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~ 269 (431)
|.+.+..|+.+|+.|..+|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|..|+.
T Consensus 184 l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~ 263 (428)
T 4b4t_K 184 IREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARE 263 (428)
T ss_dssp HHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcC-C
Q psy15151 270 KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFP-H 348 (431)
Q Consensus 270 ~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~-~ 348 (431)
.+||||||||+|.++.+|.+....++.+..+++.++|+.++++....+++||+|||+++.+||+++||||||+.|+|| +
T Consensus 264 ~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~l 343 (428)
T 4b4t_K 264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSL 343 (428)
T ss_dssp TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSS
T ss_pred cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCC
Confidence 999999999999999999887777788889999999999999999999999999999999999999999999999997 8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh--hhcc
Q psy15151 349 PNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAK--KKAN 426 (431)
Q Consensus 349 p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~--~~~~ 426 (431)
|+.++|..||+.+++++.+..++|+..||..|.||||+||.++|++|++.|+++++..|+.+||.+|+...... ....
T Consensus 344 Pd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~~~~~~~~ 423 (428)
T 4b4t_K 344 RDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDK 423 (428)
T ss_dssp CCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSCSCCCSSC
T ss_pred CCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhCccCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886543 2355
Q ss_pred cCCC
Q psy15151 427 LNYY 430 (431)
Q Consensus 427 ~~~~ 430 (431)
++||
T Consensus 424 ~d~y 427 (428)
T 4b4t_K 424 FDFY 427 (428)
T ss_dssp CCSC
T ss_pred hhhh
Confidence 6787
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-63 Score=498.51 Aligned_cols=360 Identities=40% Similarity=0.665 Sum_probs=339.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccCCcEEEEecCCCceE
Q psy15151 45 KIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTY 124 (431)
Q Consensus 45 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (431)
..++.++..+++..+.++++....+++++.++..+..+|++.+.++. ...+++.+.++.+
T Consensus 68 ~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~vg~~~~~~~~--------------------~~~iv~~~~g~~~ 127 (437)
T 4b4t_L 68 RRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSE--------------------EKYIVKASSGPRY 127 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEECSSS--------------------SCEEEEETTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeheeeecC--------------------CcEEEEECCCCEE
Confidence 34555666666666777777888888999999999999999998887 3678888889999
Q ss_pred EEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHH
Q psy15151 125 FLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKF 204 (431)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~ 204 (431)
++.+.+.++...++||+.|.+++.++.++..+|...++.+..|.+.+.|+++|++|+|++++++.|.+.+.+|+.+|+.|
T Consensus 128 ~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f 207 (437)
T 4b4t_L 128 IVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIF 207 (437)
T ss_dssp EECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHH
T ss_pred EEecccccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy15151 205 VNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIG 284 (431)
Q Consensus 205 ~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~ 284 (431)
..+|+.+|+|+|||||||||||++|+++|++++.+|+.+++++++++|+|+++..++.+|..|+...||||||||||.++
T Consensus 208 ~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~ 287 (437)
T 4b4t_L 208 QRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIG 287 (437)
T ss_dssp HHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSS
T ss_pred HhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhc
Q psy15151 285 TKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK 364 (431)
Q Consensus 285 ~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~ 364 (431)
.+|.+.+...+.+..+++.++|+.++++....+++||+|||+|+.+||+++||||||+.|+|+.|+.++|.+||+.++++
T Consensus 288 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (437)
T 4b4t_L 288 GRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK 367 (437)
T ss_dssp CCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT
T ss_pred cccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC
Confidence 99988777778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhh
Q psy15151 365 MNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 365 ~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~ 424 (431)
+....++|+..|+..|.||||+||.++|++|++.|+++++..|+.+||..|++++.+.++
T Consensus 368 ~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 368 VKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp SCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTCC
T ss_pred CCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999988644
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-60 Score=481.07 Aligned_cols=346 Identities=43% Similarity=0.733 Sum_probs=313.6
Q ss_pred cCCceeeeeeecccCCCCCc--------------cccccccccccccCCcEEEEecCCCceEEEeecccccccCCCCCCe
Q psy15151 77 NLPYLVSNVIELLDVDPQDT--------------EEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDL 142 (431)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (431)
..|++++++.+.+....... .............+....+++.+.+..|++.+...++.+.++||+.
T Consensus 94 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~ 173 (467)
T 4b4t_H 94 EHPLQVARCTKIIKGNGESDETTTDNNNSGNSNSNSNQQSTDADEDDEDAKYVINLKQIAKFVVGLGERVSPTDIEEGMR 173 (467)
T ss_dssp -CCSSSEEEEECCCC--------------------------------CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCE
T ss_pred ccchhHhhhHhHhccccccccccccccccccccccccccCccccccCCCCcEEEEecCCCeEEEecCCcCCHHHCCCCCE
Confidence 45778888887765421110 0111122223344556778899999999999999999999999999
Q ss_pred EEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCC
Q psy15151 143 VGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPG 222 (431)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppG 222 (431)
|++++.++.++..+|...++.+..|.+.+.|+++|+||+|++++++.|.+.|.+|+.+|+.|.++|+.+|+|+|||||||
T Consensus 174 v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPG 253 (467)
T 4b4t_H 174 VGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPG 253 (467)
T ss_dssp ECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTT
T ss_pred EEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHH
Q psy15151 223 TGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTM 302 (431)
Q Consensus 223 tGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 302 (431)
||||++|+++|++++.+|+.+++++++++|+|++++.++.+|..|+..+||||||||+|.++.+|.+...+.+....+++
T Consensus 254 TGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l 333 (467)
T 4b4t_H 254 TGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTM 333 (467)
T ss_dssp SSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHH
T ss_pred CcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777788889999
Q ss_pred HHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCC
Q psy15151 303 LELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDD 382 (431)
Q Consensus 303 ~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g 382 (431)
+++|+.++++....+++||+|||+++.|||+++||||||++|+|+.|+.++|.+||+.+++++.+..++++..|+..|.|
T Consensus 334 ~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~G 413 (467)
T 4b4t_H 334 LELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPN 413 (467)
T ss_dssp HHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCS
T ss_pred HHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q psy15151 383 FNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 383 ~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~ 422 (431)
|+|+||.++|++|++.|+++++..|+.+||..|++++...
T Consensus 414 fSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 414 STGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999864
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.7e-46 Score=399.96 Aligned_cols=260 Identities=38% Similarity=0.702 Sum_probs=195.7
Q ss_pred cCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 171 ~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
..|.+.|++|+|++++++.+.+.+.+|+.+|+.|.++|+.+++++|||||||||||++|+++|.+++.+|+.++++++++
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 251 MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 251 ~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
+|+|++++.++.+|+.|+...||||||||||.++++|+......+....+++.+||.+|+++....+|+||+|||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 99999999999999999999999999999999999986554444445567889999999999888999999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------
Q psy15151 331 DPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG------- 403 (431)
Q Consensus 331 ~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~------- 403 (431)
||+++||||||++|+|++|+.++|.+||+.++++.++..++|+..|+..+.||||+||.++|++|++.|+++.
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~ 709 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 709 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred ------------------CCCcCHHHHHHHHHHHHHhhh-cccCCC
Q psy15151 404 ------------------AAIVTHEDFMDAIMEVQAKKK-ANLNYY 430 (431)
Q Consensus 404 ------------------~~~It~ed~~~Al~~~~~~~~-~~~~~~ 430 (431)
...|+++||.+|++.++++-+ ..+.+|
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y 755 (806)
T 3cf2_A 710 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKY 755 (806)
T ss_dssp ------------------CCC----CCTTTC---------------
T ss_pred hhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHH
Confidence 125899999999999998743 334444
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.9e-44 Score=383.75 Aligned_cols=281 Identities=38% Similarity=0.638 Sum_probs=247.2
Q ss_pred CCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCc
Q psy15151 136 KLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGV 215 (431)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~v 215 (431)
.+.|...+.+..+|.+.+..-+... .......|.++|++|+|++++++.|.+.+.+|+.+|+.|..+|+.+|++|
T Consensus 167 ~~~P~~~~~v~~~T~i~~~~~~~~~-----~~~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GI 241 (806)
T 3cf2_A 167 ETDPSPYCIVAPDTVIHCEGEPIKR-----EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGI 241 (806)
T ss_dssp EESSSSEEECCTTSBCCBCSCCBCC-----CTTSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEE
T ss_pred EEeCCCCeEECCCcEEEEeccccCc-----ccccccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeE
Confidence 4566677777777766554333211 11233457899999999999999999999999999999999999999999
Q ss_pred eeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCc
Q psy15151 216 LLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGD 295 (431)
Q Consensus 216 Ll~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~ 295 (431)
|||||||||||++|+++|++++.+|+.++++++++++.|+++..++.+|+.|+.+.|+||||||||.|+++|.+......
T Consensus 242 LL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~ 321 (806)
T 3cf2_A 242 LLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVE 321 (806)
T ss_dssp EEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999866544333
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHH
Q psy15151 296 REVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEE 375 (431)
Q Consensus 296 ~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~ 375 (431)
.+++.+++..++++....+|+||+|||+++.+|++++|+|||++.|+++.|+..+|.+||+.+++++.+..++++..
T Consensus 322 ---~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~ 398 (806)
T 3cf2_A 322 ---RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQ 398 (806)
T ss_dssp ---HHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHH
T ss_pred ---HHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHH
Confidence 35667777788887778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCcCHHHHHHHHHHHHHhhh
Q psy15151 376 LSRSTDDFNGAQCKAVCVEAGMIALRRG-----------------AAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 376 la~~~~g~s~~di~~l~~~A~~~A~~~~-----------------~~~It~ed~~~Al~~~~~~~~ 424 (431)
||..|.||+|+||.++|++|++.|.++. ...|+.+||..|+..+.+...
T Consensus 399 lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCccc
Confidence 9999999999999999999999998773 235788999999998887644
No 9
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.2e-39 Score=308.94 Aligned_cols=261 Identities=58% Similarity=0.961 Sum_probs=244.6
Q ss_pred hhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 165 KAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 165 ~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
..+.+...|...|++|+|++++++.+.+.+..++.+++.|..+|+.++.++||+||||||||++|+++|+.++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 4 KAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVV 83 (285)
T ss_dssp -CEEEESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred ccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 34456677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q psy15151 245 GPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT 324 (431)
Q Consensus 245 ~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt 324 (431)
++++...+.|.....++.+|..+....|+||||||+|.++.++.+....++.+.+..+.++++.+++.....+++||+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 163 (285)
T 3h4m_A 84 GSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGAT 163 (285)
T ss_dssp GGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEEC
T ss_pred hHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999998887776677888899999999999888777899999999
Q ss_pred CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC
Q psy15151 325 NRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA 404 (431)
Q Consensus 325 n~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~ 404 (431)
|.++.+++++++++||+..+.+++|+.++|.+|++.+++...+..+.++..++..+.|+++++|..+|+.|...|..++.
T Consensus 164 n~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~ 243 (285)
T 3h4m_A 164 NRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELR 243 (285)
T ss_dssp SCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988888888999999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHhhhc
Q psy15151 405 AIVTHEDFMDAIMEVQAKKKA 425 (431)
Q Consensus 405 ~~It~ed~~~Al~~~~~~~~~ 425 (431)
..|+.+||.+|+.++...+..
T Consensus 244 ~~I~~~d~~~al~~~~~~~~~ 264 (285)
T 3h4m_A 244 DYVTMDDFRKAVEKIMEKKKV 264 (285)
T ss_dssp SSBCHHHHHHHHHHHHHHHCC
T ss_pred CcCCHHHHHHHHHHHHhcccc
Confidence 999999999999999876543
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=8.3e-40 Score=318.33 Aligned_cols=254 Identities=39% Similarity=0.701 Sum_probs=224.1
Q ss_pred ccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 170 ~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
...|.+.|++|+|++++++.+.+.+..|+.+|+.|..+|+.++.++||+||||||||++|+++|+.++.+|+.++++++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 250 QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 250 ~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
+.++|.....++.+|..++...|+||||||+|.++..+............+.+.+++..+++.....+++||+|||+++.
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 99999999999999999999999999999999998765432211111112345556666666666778999999999999
Q ss_pred CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------
Q psy15151 330 LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG------ 403 (431)
Q Consensus 330 l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~------ 403 (431)
++++++|+|||+..+++++|+.++|.+|++.++++..+..++++..++..+.||+|+||.++|++|++.|.++.
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~ 246 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 246 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999998888888999999999999999999999999999887652
Q ss_pred -------------------CCCcCHHHHHHHHHHHHHhh
Q psy15151 404 -------------------AAIVTHEDFMDAIMEVQAKK 423 (431)
Q Consensus 404 -------------------~~~It~ed~~~Al~~~~~~~ 423 (431)
...|+.+||..|++.++++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 247 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp -------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred hhhhcccccccccccccccCCccCHHHHHHHHHHcCCCC
Confidence 13689999999999987653
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.6e-39 Score=306.92 Aligned_cols=251 Identities=37% Similarity=0.651 Sum_probs=210.9
Q ss_pred cCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 171 ~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
..|.++|++|+|++++++.+.+.+..|+.+++.|..+++.++++++|+||||||||+|++++|...+.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 251 MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 251 ~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
.+.|+....++.+|+.++...|+++|+||+|.++..+..... ....+.+.+++..+++......++++++||+|+.+
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~---~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET---GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc---hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 888988999999999998889999999999998776532211 11224567788888887777889999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhc---CCCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHhC--
Q psy15151 331 DPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK---MNVSPDVNYEELSRST--DDFNGAQCKAVCVEAGMIALRRG-- 403 (431)
Q Consensus 331 ~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~---~~~~~~~~~~~la~~~--~g~s~~di~~l~~~A~~~A~~~~-- 403 (431)
|++++||||||+.|+++.|+.++|.+|++.++++ .....++++..++..+ .||+|+||.++|++|++.|+++.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999854 3455789999999864 59999999999999999998752
Q ss_pred ---------CCCcCHHHHHHHHHHHHHhhh
Q psy15151 404 ---------AAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 404 ---------~~~It~ed~~~Al~~~~~~~~ 424 (431)
...|+++||..|+++++++..
T Consensus 240 ~~~~~~~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 240 RQKSGNEKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp ----------CCBCHHHHHHHHTTCCCCC-
T ss_pred hccccccccCCeecHHHHHHHHHHhcCCCC
Confidence 346999999999999887643
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=6.6e-38 Score=320.84 Aligned_cols=249 Identities=45% Similarity=0.724 Sum_probs=224.5
Q ss_pred CCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~ 251 (431)
.+..+|++|+|++++++.+.+.+.. +.++..|..+|...|+++||+||||||||++|+++|.+.+.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4678999999999999999998764 778999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q psy15151 252 FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331 (431)
Q Consensus 252 ~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~ 331 (431)
+.|.+...++.+|..++...|+||||||+|.++.++.....+.+.+...++.+++..++++....+++||++||+++.++
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 99999999999999999999999999999999888754434445566678888898888777778899999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHH
Q psy15151 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHED 411 (431)
Q Consensus 332 ~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed 411 (431)
++++|+|||+..|.+++|+.++|.+|++.++++..+..++++..++..+.|++|+||.++|++|+..|.+++...|+.+|
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~d 248 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD 248 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHH
Confidence 99999999999999999999999999999999988888899999999999999999999999999999999888999999
Q ss_pred HHHHHHHHHH
Q psy15151 412 FMDAIMEVQA 421 (431)
Q Consensus 412 ~~~Al~~~~~ 421 (431)
|..|+.++..
T Consensus 249 l~~al~~v~~ 258 (476)
T 2ce7_A 249 FEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 13
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=4.3e-37 Score=292.03 Aligned_cols=251 Identities=40% Similarity=0.684 Sum_probs=222.3
Q ss_pred ccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 170 ~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
...+...|++|+|++.+++.+.+.+.. +.+++.|..+|...+.+++|+||||||||++|+++|+.++.+++.++++++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 345678999999999999999987764 7788888999988999999999999999999999999999999999999999
Q ss_pred HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 250 QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 250 ~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
..+.|.....++.+|..+....|+++||||+|.+...+......+..+....+.+++..+++.....+++||+|||.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 162 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh
Confidence 99999999999999999999889999999999998876543333344555677888888888777788999999999999
Q ss_pred CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Q psy15151 330 LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTH 409 (431)
Q Consensus 330 l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ 409 (431)
++++++|++||+..+.+++|+.++|.+|++.+++...+.++.++..++..+.||+++||.++|++|...|..++...|+.
T Consensus 163 l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~ 242 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 242 (257)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccH
Confidence 99999999999999999999999999999999998888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy15151 410 EDFMDAIMEVQA 421 (431)
Q Consensus 410 ed~~~Al~~~~~ 421 (431)
+||..|++++..
T Consensus 243 ~~~~~a~~~~~~ 254 (257)
T 1lv7_A 243 VEFEKAKDKIMM 254 (257)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999999998753
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=303.53 Aligned_cols=249 Identities=35% Similarity=0.623 Sum_probs=220.0
Q ss_pred ccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc-CCceEEeehhhh
Q psy15151 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT-KSTFLKLAGPQL 248 (431)
Q Consensus 170 ~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~-~~~~i~i~~~~l 248 (431)
...|.++|++|+|++++++.+.+.+..|+.+++.|.. +..+++++|||||||||||++|+++|+++ +.+|+.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 3457899999999999999999999999999999874 35677999999999999999999999998 889999999999
Q ss_pred hHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCC-CCCeEEEEEeCCC
Q psy15151 249 VQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS-TADIKVIAATNRV 327 (431)
Q Consensus 249 ~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~-~~~v~vI~ttn~~ 327 (431)
.+.+.|..+..++.+|..++...|+||||||||.+++++.... .....+.+.+++..+++... ..+++||+|||++
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE---SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC---TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc---chHHHHHHHHHHHHHhcccccCCCEEEEEecCCc
Confidence 9999999999999999999999999999999999988875442 22344666778888887653 5789999999999
Q ss_pred CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC---
Q psy15151 328 DILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG--- 403 (431)
Q Consensus 328 ~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~--- 403 (431)
+.++++++| ||+..+.+++|+.++|.+|++.+++..... .+.++..|+..+.||+|+||.++|++|++.|+++.
T Consensus 160 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~ 237 (322)
T 1xwi_A 160 WVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSA 237 (322)
T ss_dssp TTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred ccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999999999999999877654 45678999999999999999999999999998762
Q ss_pred ----------------------------------------------CCCcCHHHHHHHHHHHHHhhh
Q psy15151 404 ----------------------------------------------AAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 404 ----------------------------------------------~~~It~ed~~~Al~~~~~~~~ 424 (431)
...|+++||..|+..++++-+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~ 304 (322)
T 1xwi_A 238 THFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVN 304 (322)
T ss_dssp SEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCC
T ss_pred hhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCC
Confidence 126999999999999987643
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=3.2e-37 Score=302.91 Aligned_cols=250 Identities=34% Similarity=0.606 Sum_probs=215.3
Q ss_pred cccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh
Q psy15151 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL 248 (431)
Q Consensus 169 ~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l 248 (431)
....|.+.|++|+|++.+++.+.+.+..|+.+|+.|.. +..++.++||+||||||||++|+++|++++.+|+.++++++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 34567899999999999999999999999999999877 45677899999999999999999999999999999999999
Q ss_pred hHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC-CCCCeEEEEEeCCC
Q psy15151 249 VQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS-STADIKVIAATNRV 327 (431)
Q Consensus 249 ~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~-~~~~v~vI~ttn~~ 327 (431)
.+.+.|.....++.+|..++...|+||||||||.+..++..........++ .+++..+++.. ...+++||+|||.+
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~---~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIK---TELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHH---HHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHH---HHHHHHhccccccCCceEEEEecCCh
Confidence 999999999999999999999999999999999998877554444444444 44555555442 45689999999999
Q ss_pred CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC--
Q psy15151 328 DILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA-- 404 (431)
Q Consensus 328 ~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~-- 404 (431)
+.++++++| ||+..+.+++|+.++|.+|++.++++.... .+.++..|+..+.||+++||.++|++|.+.|+++..
T Consensus 165 ~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 165 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp GGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred hhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999999887654 456789999999999999999999999999988631
Q ss_pred -----------------------------------------CCcCHHHHHHHHHHHHHhhh
Q psy15151 405 -----------------------------------------AIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 405 -----------------------------------------~~It~ed~~~Al~~~~~~~~ 424 (431)
..|+++||..|++.++++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~ 303 (322)
T 3eie_A 243 THFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303 (322)
T ss_dssp EEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSC
T ss_pred hhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCC
Confidence 34999999999999987643
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.8e-36 Score=310.87 Aligned_cols=251 Identities=40% Similarity=0.695 Sum_probs=226.5
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~ 252 (431)
+...|++|+|++.+++.+.+.+..++.+++.|..+|..++.++||+||||||||++|+++|+.++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCCh
Q psy15151 253 IGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDP 332 (431)
Q Consensus 253 ~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~ 332 (431)
+|+....++.+|..+....|+||||||||.+++++..........++..|+.+++ +.....+++||+|||+++.+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld---~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD---GLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH---HSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhh---ccccCCceEEEEecCCccccCH
Confidence 9999999999999999999999999999999988754433333444455555544 4456678999999999999999
Q ss_pred hhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC-------
Q psy15151 333 ALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAA------- 405 (431)
Q Consensus 333 ~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~------- 405 (431)
+++++|||+..+.|++|+.++|.+|++.+++.+.+..+.++..++..+.||+++||.++|++|++.|.++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999888899999999999999999999999999999988633
Q ss_pred ----------CcCHHHHHHHHHHHHHhhhcc
Q psy15151 406 ----------IVTHEDFMDAIMEVQAKKKAN 426 (431)
Q Consensus 406 ----------~It~ed~~~Al~~~~~~~~~~ 426 (431)
.|+++||..|++.+.+.....
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps~~re 466 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRE 466 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHHHHHG
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCchhhhc
Confidence 489999999999999876543
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.1e-36 Score=300.95 Aligned_cols=250 Identities=34% Similarity=0.595 Sum_probs=207.8
Q ss_pred cccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh
Q psy15151 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL 248 (431)
Q Consensus 169 ~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l 248 (431)
....|...|++|+|++.+++.+.+.+..|+.+|+.|.. +..+++++||+||||||||++|+++|+.++.+|+.++++++
T Consensus 42 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp -----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 34456889999999999999999999999999999887 55778999999999999999999999999999999999999
Q ss_pred hHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCC-CCCeEEEEEeCCC
Q psy15151 249 VQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS-TADIKVIAATNRV 327 (431)
Q Consensus 249 ~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~-~~~v~vI~ttn~~ 327 (431)
...+.|.....++.+|..++...|+||||||||.+...+...... ...+...+++..+++... ..+++||+|||.+
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~---~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~ 197 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE---ASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 197 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CT---HHHHHHHHHHHHHHHCC---CCEEEEEEESCG
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcch---HHHHHHHHHHHHhhcccccCCCeEEEeecCCc
Confidence 999999999999999999999999999999999998776443222 223444555555555433 4689999999999
Q ss_pred CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC---
Q psy15151 328 DILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG--- 403 (431)
Q Consensus 328 ~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~--- 403 (431)
+.++++++| ||+..+.+++|+.++|.+|++.+++..... .+.++..|+..+.||+|+||.++|++|++.|+++.
T Consensus 198 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~ 275 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 275 (355)
T ss_dssp GGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999877653 45678999999999999999999999999999862
Q ss_pred ----------------------------------------CCCcCHHHHHHHHHHHHHhhh
Q psy15151 404 ----------------------------------------AAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 404 ----------------------------------------~~~It~ed~~~Al~~~~~~~~ 424 (431)
...|+++||..|+..++++-+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 276 THFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp SEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred hhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 135999999999999988643
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=286.07 Aligned_cols=250 Identities=37% Similarity=0.613 Sum_probs=199.5
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~ 252 (431)
|...|++|+|+++.++.+.+.+.. +.+++.|..+|+.++.++||+||||||||++|+++|+.++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999887765 7888999999999999999999999999999999999999999999999998888
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCc-CcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q psy15151 253 IGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKA-GDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331 (431)
Q Consensus 253 ~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~-~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~ 331 (431)
.|.....++.+|..+....|+||||||+|.++.++...... .+.+.+..+.++++.+++.....+++||+|||.++.++
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 88888899999999999899999999999998776432211 13345577888888888877778999999999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Q psy15151 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVN--YEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTH 409 (431)
Q Consensus 332 ~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~--~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ 409 (431)
++++++|||+..+.|++|+.++|.+|++.+++......+.+ ...++..+.|+++++|.++|+.|+..|.+++...|+.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~ 239 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCB
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 99999999999999999999999999999998877664433 3678999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhh
Q psy15151 410 EDFMDAIMEVQAKK 423 (431)
Q Consensus 410 ed~~~Al~~~~~~~ 423 (431)
+||..|+.++....
T Consensus 240 ~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 240 LNFEYAVERVLAGT 253 (262)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCh
Confidence 99999999988654
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-35 Score=305.73 Aligned_cols=249 Identities=42% Similarity=0.690 Sum_probs=227.1
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~ 252 (431)
+..+|++|+|+++++..+.+.+.. +.++..|..+|+..++++||+||||||||+||+++|...+.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 678999999999999999987664 6788899999999999999999999999999999999999999999999999888
Q ss_pred hcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCCh
Q psy15151 253 IGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDP 332 (431)
Q Consensus 253 ~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~ 332 (431)
.|.....++.+|+.+....|+|+||||||.++..+.......+.+....+.+++..+++......+++|++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 89888889999999888889999999999998776443233456667888999999998877788999999999999999
Q ss_pred hhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q psy15151 333 ALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDF 412 (431)
Q Consensus 333 ~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~ 412 (431)
+++|+|||++.|.|++|+.++|.+|++.++++..+..++++..++..+.|++|+||.++|++|+..|.+++...|+.+||
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl 264 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 264 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Confidence 99999999999999999999999999999998888888999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHh
Q psy15151 413 MDAIMEVQAK 422 (431)
Q Consensus 413 ~~Al~~~~~~ 422 (431)
.+|+.++...
T Consensus 265 ~~al~~v~~~ 274 (499)
T 2dhr_A 265 EEAADRVMML 274 (499)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhcc
Confidence 9999998754
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=2.8e-34 Score=272.18 Aligned_cols=246 Identities=42% Similarity=0.707 Sum_probs=215.3
Q ss_pred ccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 170 ~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
...|..+|++++|+++.+..+.+.+.. +.++..+...++..+.+++|+||||||||+++++++...+.+++.+++.++.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 455788999999999999999886654 5678889999999999999999999999999999999999999999999988
Q ss_pred HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 250 QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 250 ~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
..+.+.....++.+|+.+....|+++++||+|.++..+.........+....+.+++..+++......++++++||.|+.
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 88888888888999999987789999999999998766432222344556777888888888777777889999999999
Q ss_pred CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Q psy15151 330 LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTH 409 (431)
Q Consensus 330 l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ 409 (431)
+|++++|++||+..+.++.|+.++|.+|++.++++..+..++++..++..+.|++++||.++|++|+..|.+++...|+.
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~ 246 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 246 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCH
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999988889999
Q ss_pred HHHHHHH
Q psy15151 410 EDFMDAI 416 (431)
Q Consensus 410 ed~~~Al 416 (431)
+||.+|+
T Consensus 247 ~dl~~a~ 253 (254)
T 1ixz_A 247 KDLEEAA 253 (254)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999886
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=3.7e-35 Score=300.24 Aligned_cols=249 Identities=35% Similarity=0.621 Sum_probs=209.7
Q ss_pred cccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc-CCceEEeehhh
Q psy15151 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT-KSTFLKLAGPQ 247 (431)
Q Consensus 169 ~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~-~~~~i~i~~~~ 247 (431)
....|...|++|+|++.+++.+.+.+..|+.+++.|.. +..+++++||+||||||||++|+++|+.+ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 45567899999999999999999999999999998874 34577999999999999999999999999 88999999999
Q ss_pred hhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCC-CCCeEEEEEeCC
Q psy15151 248 LVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS-TADIKVIAATNR 326 (431)
Q Consensus 248 l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~-~~~v~vI~ttn~ 326 (431)
+.+.+.|.....++.+|..++...|+||||||||.+++.+....... ..+.+.++|..+++... ..+++||+|||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~---~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEA---ARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGG---GHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccH---HHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 99999999999999999999999999999999999988775543322 23556677777777653 578999999999
Q ss_pred CCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--
Q psy15151 327 VDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG-- 403 (431)
Q Consensus 327 ~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~-- 403 (431)
++.++++++| ||+..+.+++|+.++|..|++.++...... .+.++..|+..+.||+|+||.++|++|++.|+++.
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999876653 45678999999999999999999999999998751
Q ss_pred -----------------------------------------------CCCcCHHHHHHHHHHHHHhh
Q psy15151 404 -----------------------------------------------AAIVTHEDFMDAIMEVQAKK 423 (431)
Q Consensus 404 -----------------------------------------------~~~It~ed~~~Al~~~~~~~ 423 (431)
...|+++||..|+..++++-
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~ 425 (444)
T 2zan_A 359 ATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTV 425 (444)
T ss_dssp CSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSC
T ss_pred hhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCC
Confidence 12589999999999998764
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=6.4e-33 Score=266.51 Aligned_cols=246 Identities=42% Similarity=0.707 Sum_probs=215.6
Q ss_pred ccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 170 ~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
...|..+|++++|+++.+..+.+.+.. +.++..+...++..+.+++|+||||||||+|+++++...+.+++.+++.++.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 344788999999999999999886654 5678889999998889999999999999999999999999999999999988
Q ss_pred HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 250 QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 250 ~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
..+.+.....++.+|+.+....|+++++||+|.++..+.........+....+.+++..+++......++++++||.|+.
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 88888888888999999988889999999999987665332222345566788889999888776777889999999999
Q ss_pred CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Q psy15151 330 LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTH 409 (431)
Q Consensus 330 l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ 409 (431)
+|++++|++||+..+.|++|+.++|.+|++.+++...+..++++..++..+.|++++||.++|++|...|.+++...|+.
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~ 270 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 270 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCH
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Confidence 99999999999999999999999999999999988888888899999999999999999999999999999988889999
Q ss_pred HHHHHHH
Q psy15151 410 EDFMDAI 416 (431)
Q Consensus 410 ed~~~Al 416 (431)
+||.+|+
T Consensus 271 ~dl~~a~ 277 (278)
T 1iy2_A 271 KDLEEAA 277 (278)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999886
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=1.5e-36 Score=289.77 Aligned_cols=256 Identities=40% Similarity=0.686 Sum_probs=216.1
Q ss_pred cCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 171 ~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
..|...|++|+|++.+++.+.+.+.. +.+++.|..+|..++.++||+||||||||++|+++|...+.+++.++++.+..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 34678899999999999999987764 88899999999999999999999999999999999999999999999999988
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCC-cCcHHHHHHHHHHHHhhcCCCC-CCCeEEEEEeCCCC
Q psy15151 251 MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEK-AGDREVQRTMLELLNQLDGFSS-TADIKVIAATNRVD 328 (431)
Q Consensus 251 ~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~-~~~~~~~~~l~~lL~~~~~~~~-~~~v~vI~ttn~~~ 328 (431)
.+.|.+...++.+|+.+....|+||||||+|.+...+..... ..+......+.+++..+++... ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 888888777888999999888999999999999776522110 0111112345566666666543 35689999999999
Q ss_pred CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcC
Q psy15151 329 ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVT 408 (431)
Q Consensus 329 ~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It 408 (431)
.++++++++|||+..+.|++|+.++|.+|++.+++.+.+..+.++..++..+.|++|++|.++|+.|...|..++...|+
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~ 242 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcC
Confidence 99999999999999999999999999999999999888878888999999999999999999999999999888888999
Q ss_pred HHHHHHHHHHHHHhhhccc
Q psy15151 409 HEDFMDAIMEVQAKKKANL 427 (431)
Q Consensus 409 ~ed~~~Al~~~~~~~~~~~ 427 (431)
.+||.+|+..+.++.....
T Consensus 243 ~~~~~~a~~~~~~~~~~~~ 261 (268)
T 2r62_A 243 QQHLKEAVERGIAGLEKKL 261 (268)
T ss_dssp HHHHHTSCTTCCCCCC---
T ss_pred HHHHHHHHHHHhhcchhhh
Confidence 9999999999887755444
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=277.95 Aligned_cols=262 Identities=34% Similarity=0.555 Sum_probs=216.9
Q ss_pred chhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 157 PAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
+......+........+...|++|+|++.+++.+.+.+..++.+++.|...+ .++.++||+||||||||++|+++|..+
T Consensus 63 ~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3333333444445566789999999999999999999999999998887665 567899999999999999999999999
Q ss_pred CCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC--C
Q psy15151 237 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS--S 314 (431)
Q Consensus 237 ~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~--~ 314 (431)
+.+|+.++++++...+.|.....++.+|..+....|+||||||||.++..+..... ....+.+.+++..+++.. .
T Consensus 142 ~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~---~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 142 GATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEH---ESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp TCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----C
T ss_pred CCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcc---hHHHHHHHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999877643222 223345556666666543 3
Q ss_pred CCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHH
Q psy15151 315 TADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCV 393 (431)
Q Consensus 315 ~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~ 393 (431)
..+++||+|||.++.+++++++ ||+..+.++.|+.++|.+|+..+++..... .+.++..++..+.||++++|..+|+
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4689999999999999999999 999999999999999999999998765543 3445788999999999999999999
Q ss_pred HHHHHHHHhC------------CCCcCHHHHHHHHHHHHHhhh
Q psy15151 394 EAGMIALRRG------------AAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 394 ~A~~~A~~~~------------~~~It~ed~~~Al~~~~~~~~ 424 (431)
.|...++++- ...|+.+||..|+..+.++..
T Consensus 297 ~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 297 EASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp HHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCC
Confidence 9999998853 357999999999999998643
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-33 Score=272.75 Aligned_cols=251 Identities=35% Similarity=0.584 Sum_probs=209.3
Q ss_pred cccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh
Q psy15151 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL 248 (431)
Q Consensus 169 ~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l 248 (431)
....|...|++|+|++.+++.+.+.+..+..+++.|..++ .++.++||+||||||||++|+++|+.++.+|+.++++++
T Consensus 12 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 90 (297)
T 3b9p_A 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASL 90 (297)
T ss_dssp BCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTT
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHH
Confidence 4456788999999999999999999999999999887766 457899999999999999999999999999999999999
Q ss_pred hHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 249 VQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 249 ~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
...+.|.....++.+|..+....|+||||||+|.++..+...........+..++..++.........+++||++||.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 99999999999999999999999999999999999887754433344444555555555433222236799999999999
Q ss_pred CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC----
Q psy15151 329 ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG---- 403 (431)
Q Consensus 329 ~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~---- 403 (431)
.+++++++ ||+..+.++.|+.++|..|++.+++..... .+.++..++..+.|++++++..+|+.|+..|.++.
T Consensus 171 ~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~ 248 (297)
T 3b9p_A 171 ELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQ 248 (297)
T ss_dssp GBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC---
T ss_pred hCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999 999999999999999999999998876543 33457889999999999999999999999999874
Q ss_pred --------CCCcCHHHHHHHHHHHHHh
Q psy15151 404 --------AAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 404 --------~~~It~ed~~~Al~~~~~~ 422 (431)
...|+.+||..|+..++++
T Consensus 249 ~~~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 249 VKCLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp -----CCCCCCCCHHHHHHHTTSCCCS
T ss_pred cccccccccCCcCHHHHHHHHHHcCCC
Confidence 2579999999999887654
No 26
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=8.9e-36 Score=324.69 Aligned_cols=252 Identities=39% Similarity=0.711 Sum_probs=218.9
Q ss_pred cCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 171 ~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
..|...|++++|+++.++.+.+.+..++.+++.|..+++.++.++||+||||||||++|+++|..++.+|+.++++++.+
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 251 MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 251 ~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
+|+|+.+..++.+|+.++...|+||||||||.++..+.......+....+.+.++|..+++.....+++||+|||+++.+
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~l 629 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccC
Confidence 99999999999999999999999999999999998875544433445567788999999988888899999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC------
Q psy15151 331 DPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA------ 404 (431)
Q Consensus 331 ~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~------ 404 (431)
|++++|||||+..|+|+.|+.++|.+|++.++++..+..++++..++..+.||++++|.++|++|...|.++.-
T Consensus 630 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~ 709 (806)
T 1ypw_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 709 (806)
T ss_dssp SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-------
T ss_pred CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998888889999999999999999999999999999988741
Q ss_pred -------------------CCcCHHHHHHHHHHHHHh
Q psy15151 405 -------------------AIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 405 -------------------~~It~ed~~~Al~~~~~~ 422 (431)
..|+.+||.+|+..++++
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~s 746 (806)
T 1ypw_A 710 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 746 (806)
T ss_dssp -----------------CCTTTTTTSSCCCCCC----
T ss_pred hhhhcccccccccccccccCccCHHHHHHHHHhCCCC
Confidence 257888888887766654
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=3.8e-32 Score=273.52 Aligned_cols=250 Identities=33% Similarity=0.576 Sum_probs=199.6
Q ss_pred cccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh
Q psy15151 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL 248 (431)
Q Consensus 169 ~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l 248 (431)
+...+...|++|+|++.+++.+.+.+..+..+++.|...+ .++.++||+||||||||++|+++|..++.+|+.++|+++
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 3445678999999999999999999999999998888777 456899999999999999999999999999999999999
Q ss_pred hHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 249 VQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 249 ~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
...+.|.....++.+|..++...|+||||||||.++..+..........++..++..++.... ....+++||+|||.++
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~v~vI~atn~~~ 263 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-AGDDRVLVMGATNRPQ 263 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------CEEEEEEESCGG
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc-cCCCCEEEEEecCCch
Confidence 999999999999999999999999999999999998776544333344444444444443321 1246799999999999
Q ss_pred CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Q psy15151 329 ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR----- 402 (431)
Q Consensus 329 ~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~----- 402 (431)
.+++++++ ||+..+.|+.|+.++|.+|++.++...... .+.++..|+..+.|+++++|..+|+.|+..++++
T Consensus 264 ~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~ 341 (389)
T 3vfd_A 264 ELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQ 341 (389)
T ss_dssp GCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC-
T ss_pred hcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999 999999999999999999999998775443 2345788999999999999999999999999987
Q ss_pred -------CCCCcCHHHHHHHHHHHHHh
Q psy15151 403 -------GAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 403 -------~~~~It~ed~~~Al~~~~~~ 422 (431)
....|+.+||..|+..+.+.
T Consensus 342 ~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 342 VKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp --CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred hhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 34579999999999876553
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=2e-29 Score=274.67 Aligned_cols=249 Identities=41% Similarity=0.693 Sum_probs=220.9
Q ss_pred cCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 171 ~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
..+.+.|++|+|++++++.+.+.+..|+.+|+.|..+++.++.++||+||||||||++|+++|..++.+++.++++++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 251 MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 251 ~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
.+.|+....++.+|+.+....|+++||||+|.++..+...... ...+.+.+++..+++.....++++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSH---HHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccch---HHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 9999999999999999999999999999999998876443222 2234455666666776677889999999999999
Q ss_pred ChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC------
Q psy15151 331 DPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA------ 404 (431)
Q Consensus 331 ~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~------ 404 (431)
++++.+++||+..+.++.|+.++|.+|++.+++++.+..+.++..++..+.|++++++..+|.+|...+.++..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 99999999999999999999999999999999999988889999999999999999999999999998887643
Q ss_pred -----------CCcCHHHHHHHHHHHHHh
Q psy15151 405 -----------AIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 405 -----------~~It~ed~~~Al~~~~~~ 422 (431)
..++.+|+..++....+.
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred hhccchhhhhhhhhhhhhhhccccccCch
Confidence 246777888888776543
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.94 E-value=1.3e-26 Score=224.40 Aligned_cols=176 Identities=21% Similarity=0.316 Sum_probs=136.1
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHH----HhCCCeEEEEcccccc
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALA----KEKAPAIIFIDELDAI 283 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a----~~~~p~vl~iDEid~l 283 (431)
+..+|.++|||||||||||++|+++|+.++.+|+.++++++.+.++|.++..++.+|..+ +...|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 556789999999999999999999999999999999999999999999999999999888 5778999999999999
Q ss_pred ccCCCCC--CCcCcHHHHHHHHHHHHhhc--------CCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHH
Q psy15151 284 GTKRFDS--EKAGDREVQRTMLELLNQLD--------GFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 353 (431)
Q Consensus 284 ~~~r~~~--~~~~~~~~~~~l~~lL~~~~--------~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~ 353 (431)
++++.+. .......++..|+++|+... ......+++||+|||.++.++++++|+|||+..+.+ |+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCHHH
Confidence 8855321 11234456677777776332 222456899999999999999999999999998874 69999
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHH
Q psy15151 354 RARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCK 389 (431)
Q Consensus 354 r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~ 389 (431)
|.+|++.++.. ..++.+.++..+.+|++++|.
T Consensus 190 r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHH
T ss_pred HHHHHHHhccC----CCCCHHHHHHHhCCCCcccHH
Confidence 99999988863 356788999999999988875
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.90 E-value=2.5e-23 Score=202.04 Aligned_cols=224 Identities=20% Similarity=0.238 Sum_probs=170.6
Q ss_pred cccccCchHHHHHHHHHhhccccChHHHHhcCCCCC---CCceeeCCCCCchHHHHHHHHHHc-------CCceEEeehh
Q psy15151 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPP---KGVLLYGPPGTGKTLLARACAAQT-------KSTFLKLAGP 246 (431)
Q Consensus 177 ~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~---~~vLl~GppGtGKT~lakala~~~-------~~~~i~i~~~ 246 (431)
..+|+|+++.++.+.+.+..+. .+..+.+.|+.++ .++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 3479999999999999887654 4666677776543 469999999999999999999976 3489999999
Q ss_pred hhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 247 QLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 247 ~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
++...++|.....+..+|..+. ++||||||+|.++..+.+ ...+.+.+..|+.+++. ...++++|+++|.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~-----~~~~~~~i~~~~~ 178 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN-----NRDDLVVILAGYA 178 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHH-----CTTTCEEEEEECH
T ss_pred HhhhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhc-----CCCCEEEEEeCCh
Confidence 9999999999888888888773 569999999999765432 23456777777777775 3467889999986
Q ss_pred CC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHH-------cCCCCHHHHHHHHH
Q psy15151 327 VD-----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRS-------TDDFNGAQCKAVCV 393 (431)
Q Consensus 327 ~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~-------~~g~s~~di~~l~~ 393 (431)
.. .++|++++ ||+..+.|++|+.+++.+|++.++......-+ ..+..++.. ....+++++.+++.
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 53 25789999 99999999999999999999999987654422 224445554 33346899999999
Q ss_pred HHHHHHHHh----CCCCcCHHHHH
Q psy15151 394 EAGMIALRR----GAAIVTHEDFM 413 (431)
Q Consensus 394 ~A~~~A~~~----~~~~It~ed~~ 413 (431)
.|...+..+ ....++.+++.
T Consensus 257 ~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 257 RARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHh
Confidence 998766554 34556666654
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=1.9e-24 Score=221.76 Aligned_cols=110 Identities=24% Similarity=0.290 Sum_probs=93.9
Q ss_pred CCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC--CceEEeehhhhh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK--STFLKLAGPQLV 249 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~--~~~i~i~~~~l~ 249 (431)
.|...|++++|+++.++.+...+.. ...|..+++++||+||||||||++|+++|+.++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 3567799999999999988876643 233555778999999999999999999999999 899999999999
Q ss_pred HhhhcchHHHHHHHHHHH---HhCCCeEEEEccccccccCCCCC
Q psy15151 250 QMFIGDGAKLVRDAFALA---KEKAPAIIFIDELDAIGTKRFDS 290 (431)
Q Consensus 250 ~~~~g~~~~~~~~lf~~a---~~~~p~vl~iDEid~l~~~r~~~ 290 (431)
++++|+++. ++.+|..+ +...|+||||||+|.++++|.+.
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~ 145 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETEN 145 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC----
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCC
Confidence 999999887 89999998 77889999999999999888544
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.89 E-value=8.5e-23 Score=203.09 Aligned_cols=221 Identities=20% Similarity=0.262 Sum_probs=161.6
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehhhhhH
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGPQLVQ 250 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~~l~~ 250 (431)
|...|++++|++..++.+....... ..|..+++++||+||||||||++|+++|+.++. +++.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 4556999999999988865443321 123335689999999999999999999999875 788888766433
Q ss_pred hhh-------------------------------------------------cchHHHHHHHHHHHHh-----C----CC
Q psy15151 251 MFI-------------------------------------------------GDGAKLVRDAFALAKE-----K----AP 272 (431)
Q Consensus 251 ~~~-------------------------------------------------g~~~~~~~~lf~~a~~-----~----~p 272 (431)
.+. |.....++..+..+.. + .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 221 1123334444444322 2 26
Q ss_pred eEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe-----------CCCCCCChhhhcCCCcc
Q psy15151 273 AIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT-----------NRVDILDPALLRSGRLD 341 (431)
Q Consensus 273 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt-----------n~~~~l~~~l~r~gR~~ 341 (431)
+||||||+|.+ +.+.++.|+.+++. ...+++++++. |.+..+++++++ ||.
T Consensus 191 ~vl~IDEi~~l-----------~~~~~~~L~~~le~-----~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHML-----------DIESFSFLNRALES-----DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGS-----------BHHHHHHHHHHTTC-----TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhcccc-----------ChHHHHHHHHHhhC-----cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 79999999998 56667777666643 22345444443 347789999999 996
Q ss_pred eEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q psy15151 342 RKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 342 ~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~ 420 (431)
. +.|++|+.+++.+|++.++...+.. ++..+..++..+.+.+++++.++|..|...|..++...|+.+|+.+|+..+.
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSB
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 6 8999999999999999888764433 2223667788887678899999999999999999999999999999998743
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=1.3e-21 Score=192.44 Aligned_cols=217 Identities=16% Similarity=0.199 Sum_probs=170.0
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
...|++++|++..++.+...+....... .++.++||+||||||||++|+++|+..+.+|+.++|+.+.
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~--------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~---- 92 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRN--------ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE---- 92 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTT--------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcC--------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc----
Confidence 4589999999999999998887542211 2557899999999999999999999999999999997652
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC-------------CCCCCeEE
Q psy15151 254 GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF-------------SSTADIKV 320 (431)
Q Consensus 254 g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~-------------~~~~~v~v 320 (431)
....+...+.. ...+++|||||||.+ +...+..|+.+++..... ....++++
T Consensus 93 --~~~~~~~~~~~--~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 93 --KSGDLAAILTN--LSEGDILFIDEIHRL-----------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp --SHHHHHHHHHT--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred --chhHHHHHHHh--ccCCCEEEEechhhc-----------CHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 22233333332 245789999999998 677888888888763210 01125889
Q ss_pred EEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 321 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 321 I~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
|++||....+++++++ ||+..+.|++|+.+++..++..++...... ++..+..++..+ +.+++++.+++..+...|
T Consensus 158 i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~-~G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRS-RSTPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTT-TTCHHHHHHHHHHHHHHH
T ss_pred EEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999998876643 222355667744 456799999999998888
Q ss_pred HHhCCCCcCHHHHHHHHHHHH
Q psy15151 400 LRRGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 400 ~~~~~~~It~ed~~~Al~~~~ 420 (431)
...+...|+.+++..++....
T Consensus 235 ~~~~~~~i~~~~~~~~~~~~~ 255 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALNSLG 255 (338)
T ss_dssp HHTTCSEECHHHHHHHHHHHT
T ss_pred HhhcCCccCHHHHHHHHHHhC
Confidence 888888899999999887643
No 34
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.88 E-value=2.6e-24 Score=236.66 Aligned_cols=333 Identities=19% Similarity=0.242 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccCC
Q psy15151 32 DINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKG 111 (431)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (431)
...+|++.++.++..++.++..+..+|+.++..++.++...+++......++......+ +...+.+.|...+..
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 500 (854)
T 1qvr_A 427 DSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYD------LNRAAELRYGELPKL 500 (854)
T ss_dssp HHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC------HHHHHHHHTTHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccc------HHHHHHHhhhhhHHH
Confidence 34556778888888899999999999998888777777766666543222222111111 111122222111110
Q ss_pred cEEEEec---CCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHH
Q psy15151 112 KCAVIKT---STRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQ 188 (431)
Q Consensus 112 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~ 188 (431)
+..+... .....+ +...++.+.+.. .+..++.++...+.......+..+. ...+.+|+|++.+++
T Consensus 501 ~~~~~~~~~~~~~~~~---~~~~v~~~~l~~----~v~~~~~ip~~~~~~~~~~~l~~l~-----~~l~~~viG~~~a~~ 568 (854)
T 1qvr_A 501 EAEVEALSEKLRGARF---VRLEVTEEDIAE----IVSRWTGIPVSKLLEGEREKLLRLE-----EELHKRVVGQDEAIR 568 (854)
T ss_dssp HHHHHHHHHHSSSCSS---CCSEECHHHHHH----HHHTTSSCHHHHTTCCHHHHHHSHH-----HHHHHHSCSCHHHHH
T ss_pred HHHHHHHHhhhccccc---ccCCcCHHHHHH----HHHHHhCCChHhhcHHHHHHHHHHH-----HHHhcccCCcHHHHH
Confidence 0000000 000000 011122222222 4666777666665444444444333 345678999999999
Q ss_pred HHHHHhhccc---cChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHh-----hhcchH
Q psy15151 189 ELIEAVVLPM---THKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQM-----FIGDGA 257 (431)
Q Consensus 189 ~l~~~i~~~~---~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~-----~~g~~~ 257 (431)
.+...+.... ..|. .|..++||+||||||||++|+++|..+ +.+|+.++|+++... ++|..+
T Consensus 569 ~l~~~i~~~~~g~~~~~-------~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~ 641 (854)
T 1qvr_A 569 AVADAIRRARAGLKDPN-------RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPP 641 (854)
T ss_dssp HHHHHHHHHGGGCSCSS-------SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----
T ss_pred HHHHHHHHHhcccCCCC-------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCC
Confidence 9998887532 1111 133589999999999999999999987 789999999876543 333333
Q ss_pred HHH-----HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCC------CCCeEEEEEeCC
Q psy15151 258 KLV-----RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS------TADIKVIAATNR 326 (431)
Q Consensus 258 ~~~-----~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~------~~~v~vI~ttn~ 326 (431)
+++ +.++..++..+++||||||||.+ ++++++.|+++|+...-... ..+++||+|||.
T Consensus 642 ~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 642 GYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp ---------CHHHHHHHCSSEEEEESSGGGS-----------CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred CCcCccccchHHHHHHhCCCeEEEEeccccc-----------CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 222 34556667777899999999998 88999999999986432111 247889999997
Q ss_pred --------------------------CCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcC-------CCC---CC
Q psy15151 327 --------------------------VDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKM-------NVS---PD 370 (431)
Q Consensus 327 --------------------------~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~---~~ 370 (431)
...+.|+|++ ||+.++.|++|+.+++..|+..++..+ ... ++
T Consensus 711 ~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~ 788 (854)
T 1qvr_A 711 GSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTE 788 (854)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECH
T ss_pred ChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECH
Confidence 2357889998 999999999999999999998877632 111 12
Q ss_pred CCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHh
Q psy15151 371 VNYEELSRSTD--DFNGAQCKAVCVEAGMIALRR 402 (431)
Q Consensus 371 ~~~~~la~~~~--g~s~~di~~l~~~A~~~A~~~ 402 (431)
..+..|+.... .++.+++.++|+.+...+..+
T Consensus 789 ~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 789 AAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp HHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 22556777655 678899999999887766543
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.87 E-value=5.7e-21 Score=186.47 Aligned_cols=216 Identities=21% Similarity=0.289 Sum_probs=166.2
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~ 252 (431)
....|++++|.+..++.+...+...... + .++.++||+||||||||++|+++++.++.+++.++|+.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR-------K-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH-------C-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--
Confidence 4568999999999999998877643211 1 24578999999999999999999999999999999876522
Q ss_pred hcchHHHHHHHHHHHHh--CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc-----CCC--------CCCC
Q psy15151 253 IGDGAKLVRDAFALAKE--KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD-----GFS--------STAD 317 (431)
Q Consensus 253 ~g~~~~~~~~lf~~a~~--~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~-----~~~--------~~~~ 317 (431)
... ++..... ..+++|||||+|.+ +...+..++.+++... +.. ...+
T Consensus 77 ----~~~---l~~~l~~~~~~~~~l~lDEi~~l-----------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ----PGD---LAAILANSLEEGDILFIDEIHRL-----------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ----HHH---HHHHHTTTCCTTCEEEETTTTSC-----------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ----hHH---HHHHHHHhccCCCEEEEECCccc-----------ccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 122 2223322 45789999999998 5677788888888642 000 1136
Q ss_pred eEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15151 318 IKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDFNGAQCKAVCVEAG 396 (431)
Q Consensus 318 v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s~~di~~l~~~A~ 396 (431)
+.+|++||.+..+++++.+ ||+.++.|++|+.+++..++..++...+..- +..+..++..+. .+++++.+++..+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSR-GTMRVAKRLFRRVR 215 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSC-SCHHHHHHHHHHHT
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcc-CCHHHHHHHHHHHH
Confidence 8899999999999999998 9988999999999999999999887655431 223566777775 45689999999888
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHH
Q psy15151 397 MIALRRGAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 397 ~~A~~~~~~~It~ed~~~Al~~~ 419 (431)
..|...+...|+.+++..++...
T Consensus 216 ~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 216 DFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHh
Confidence 77766667789999998887764
No 36
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.86 E-value=6.3e-21 Score=207.30 Aligned_cols=231 Identities=16% Similarity=0.218 Sum_probs=157.6
Q ss_pred EcCcchhhhhcCchhHHHHhhhhhcccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCc
Q psy15151 145 VNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTG 224 (431)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtG 224 (431)
++.++.+++..+.......+..+. .....+++|++.+++.+...+........ ..-.|..++||+||||||
T Consensus 463 v~~~~~ip~~~~~~~~~~~l~~l~-----~~l~~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtG 533 (758)
T 3pxi_A 463 VSSWTGVPVSKIAQTETDKLLNME-----NILHSRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVG 533 (758)
T ss_dssp HHTTC-------CHHHHSCC-CHH-----HHHHTTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSS
T ss_pred HHHHhCCChHHhhHHHHHHHHHHH-----HHHhCcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCC
Confidence 444555555544444433333333 33457899999999999998875421100 000122369999999999
Q ss_pred hHHHHHHHHHHc---CCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHH
Q psy15151 225 KTLLARACAAQT---KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRT 301 (431)
Q Consensus 225 KT~lakala~~~---~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~ 301 (431)
||++|+++|..+ +.+|++++|+++...+... .+.++..++..+++||||||||.+ ++++++.
T Consensus 534 KT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~ 598 (758)
T 3pxi_A 534 KTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNI 598 (758)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHH
Confidence 999999999986 6799999999998876554 233455666778899999999998 8899999
Q ss_pred HHHHHHhhcCCC------CCCCeEEEEEeCCCCC------------CChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHh
Q psy15151 302 MLELLNQLDGFS------STADIKVIAATNRVDI------------LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSR 363 (431)
Q Consensus 302 l~~lL~~~~~~~------~~~~v~vI~ttn~~~~------------l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~ 363 (431)
|+++|+...-.. ...+++||+|||.+.. +.|+|++ ||+.+|.|++|+.+++..|+..++.
T Consensus 599 Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 599 LLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp HHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred HHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 999999843211 2357899999997654 7899998 9999999999999999999988765
Q ss_pred cC-------CCCCCC---CHHHHHHH--cCCCCHHHHHHHHHHHHHHHHH
Q psy15151 364 KM-------NVSPDV---NYEELSRS--TDDFNGAQCKAVCVEAGMIALR 401 (431)
Q Consensus 364 ~~-------~~~~~~---~~~~la~~--~~g~s~~di~~l~~~A~~~A~~ 401 (431)
.+ .....+ .++.|+.. ...++.++++++++++...+..
T Consensus 677 ~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~ 726 (758)
T 3pxi_A 677 QLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLS 726 (758)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHH
T ss_pred HHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Confidence 42 111112 24556553 3446778899988877665544
No 37
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.85 E-value=5.7e-20 Score=182.96 Aligned_cols=228 Identities=17% Similarity=0.201 Sum_probs=166.4
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---------CCceEEee
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---------KSTFLKLA 244 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---------~~~~i~i~ 244 (431)
....++++|.++.++.+...+...+.. ..+.+++|+||||||||++++++++.+ +.+++.++
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALRG---------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTSS---------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 344588999999999999887643322 256789999999999999999999987 78899999
Q ss_pred hhhhhH------hh----------hcchH-HHHHHHHHHHHh-CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHH
Q psy15151 245 GPQLVQ------MF----------IGDGA-KLVRDAFALAKE-KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELL 306 (431)
Q Consensus 245 ~~~l~~------~~----------~g~~~-~~~~~lf~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL 306 (431)
|....+ .. .|... .....++..+.. ..|.||||||+|.+...+ ..+..+..++
T Consensus 86 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~ 156 (387)
T 2v1u_A 86 ARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRIT 156 (387)
T ss_dssp TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHh
Confidence 864321 11 12212 224455555543 347899999999984321 1456777888
Q ss_pred HhhcCCCCCCCeEEEEEeCCC---CCCChhhhcCCCcce-EEEcCCCCHHHHHHHHHHHHhc----CCCCCCCCHHHHHH
Q psy15151 307 NQLDGFSSTADIKVIAATNRV---DILDPALLRSGRLDR-KIEFPHPNEEARARIMQIHSRK----MNVSPDVNYEELSR 378 (431)
Q Consensus 307 ~~~~~~~~~~~v~vI~ttn~~---~~l~~~l~r~gR~~~-~i~~~~p~~~~r~~Il~~~l~~----~~~~~~~~~~~la~ 378 (431)
+.........++.+|++||.+ ..+++.+.+ ||.. .+.|++|+.+++.+|+...+.. ..++ +..+..++.
T Consensus 157 ~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~ 233 (387)
T 2v1u_A 157 RINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAA 233 (387)
T ss_dssp HGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHH
T ss_pred hchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHH
Confidence 776543225678899999987 678899998 8875 8999999999999999988764 2222 223666776
Q ss_pred HcC--CCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q psy15151 379 STD--DFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 379 ~~~--g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~ 422 (431)
.+. ..+++.+.++|..|...|...+...|+.+|+..|+..+...
T Consensus 234 ~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 279 (387)
T 2v1u_A 234 LAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD 279 (387)
T ss_dssp HHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc
Confidence 665 13568888999999999988888899999999999887543
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=6.9e-21 Score=184.31 Aligned_cols=242 Identities=23% Similarity=0.248 Sum_probs=162.2
Q ss_pred cccccCchHHHHHHHHHhhccccChHHHHhc-CCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH-hhhc
Q psy15151 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNL-GIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ-MFIG 254 (431)
Q Consensus 177 ~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~-g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~-~~~g 254 (431)
.++|+|++.+++.+...+..+..++...... +-.++.++||+||||||||++|+++|+.++.+++.++|+.+.. .++|
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~ 93 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGG
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccC
Confidence 3569999999999998887543222111000 0125679999999999999999999999999999999998865 4555
Q ss_pred ch-HHHHHHHHHHH-----HhCCCeEEEEccccccccCCCCCCCc-CcHHHHHHHHHHHHhhcC-----CCCCCCeEEEE
Q psy15151 255 DG-AKLVRDAFALA-----KEKAPAIIFIDELDAIGTKRFDSEKA-GDREVQRTMLELLNQLDG-----FSSTADIKVIA 322 (431)
Q Consensus 255 ~~-~~~~~~lf~~a-----~~~~p~vl~iDEid~l~~~r~~~~~~-~~~~~~~~l~~lL~~~~~-----~~~~~~v~vI~ 322 (431)
.. ...++.++..+ ....++||||||+|.+.......... ....+++.|+++++.... .....++++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 94 KEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp GSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred ccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 43 34455555422 11235799999999997654321111 111235666666664210 01235778888
Q ss_pred Ee----CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHH-----------HhcCCCC---CCCCHHHHHHHcC---
Q psy15151 323 AT----NRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIH-----------SRKMNVS---PDVNYEELSRSTD--- 381 (431)
Q Consensus 323 tt----n~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~-----------l~~~~~~---~~~~~~~la~~~~--- 381 (431)
++ +.+..+++++++ ||+..+.|++|+.+++.+|++.. +...... ++..+..|+..+.
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 84 567789999999 99999999999999999999831 1112211 1222556666552
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHhC-----C-CCcCHHHHHHHHHHHH
Q psy15151 382 ----DFNGAQCKAVCVEAGMIALRRG-----A-AIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 382 ----g~s~~di~~l~~~A~~~A~~~~-----~-~~It~ed~~~Al~~~~ 420 (431)
+.+.+.+.++|..+...+..+. . ..|+.+|+.+++....
T Consensus 252 ~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 252 EKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred ccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 4678999999998775544322 1 1499999999987643
No 39
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.84 E-value=1.1e-19 Score=178.98 Aligned_cols=226 Identities=19% Similarity=0.241 Sum_probs=152.2
Q ss_pred cCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC-------c----
Q psy15151 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS-------T---- 239 (431)
Q Consensus 171 ~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~-------~---- 239 (431)
..+...|++++|++..++.+......+ .+.++||+||||||||++|+++|+.++. +
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~ 83 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP 83 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCS
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccc
Confidence 345678999999999777654433221 2356999999999999999999998763 2
Q ss_pred ----------------------eEEeehhhhhHhhhcchHHHHHHHHHHH---------HhCCCeEEEEccccccccCCC
Q psy15151 240 ----------------------FLKLAGPQLVQMFIGDGAKLVRDAFALA---------KEKAPAIIFIDELDAIGTKRF 288 (431)
Q Consensus 240 ----------------------~i~i~~~~l~~~~~g~~~~~~~~lf~~a---------~~~~p~vl~iDEid~l~~~r~ 288 (431)
++.+........++|... +...+... ....++||||||||.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l----- 156 (350)
T 1g8p_A 84 NVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLL----- 156 (350)
T ss_dssp SGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-----
T ss_pred ccccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhC-----
Confidence 111111111112222100 01111111 0113579999999998
Q ss_pred CCCCcCcHHHHHHHHHHHHhhc----CCC----CCCCeEEEEEeCCCC-CCChhhhcCCCcceEEEcCCC-CHHHHHHHH
Q psy15151 289 DSEKAGDREVQRTMLELLNQLD----GFS----STADIKVIAATNRVD-ILDPALLRSGRLDRKIEFPHP-NEEARARIM 358 (431)
Q Consensus 289 ~~~~~~~~~~~~~l~~lL~~~~----~~~----~~~~v~vI~ttn~~~-~l~~~l~r~gR~~~~i~~~~p-~~~~r~~Il 358 (431)
+...+..|+++++... ... ...++++|+|||..+ .+++++++ ||+..+.+++| +.+.+.+|+
T Consensus 157 ------~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il 228 (350)
T 1g8p_A 157 ------EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVI 228 (350)
T ss_dssp ------CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHH
T ss_pred ------CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHH
Confidence 6778888888888621 111 123788999999754 89999999 99999999999 677777888
Q ss_pred HHHH-------------------------------hcCCCCCCCCHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhCC
Q psy15151 359 QIHS-------------------------------RKMNVSPDVNYEELSRSTDD---FNGAQCKAVCVEAGMIALRRGA 404 (431)
Q Consensus 359 ~~~l-------------------------------~~~~~~~~~~~~~la~~~~g---~s~~di~~l~~~A~~~A~~~~~ 404 (431)
...+ ..+.++++ .+..|+....+ .+.+.+.++++.|...|..+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~-~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~ 307 (350)
T 1g8p_A 229 RRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNT-ALYDCAALCIALGSDGLRGELTLLRSARALAALEGA 307 (350)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHH-HHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC
Confidence 6521 11222222 24455554433 2579999999999999999998
Q ss_pred CCcCHHHHHHHHHHHHHhhhc
Q psy15151 405 AIVTHEDFMDAIMEVQAKKKA 425 (431)
Q Consensus 405 ~~It~ed~~~Al~~~~~~~~~ 425 (431)
..|+.+|+.+|+..+..++..
T Consensus 308 ~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 308 TAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp SBCCHHHHHHHHHHHHGGGCC
T ss_pred CcCCHHHHHHHHHHHHhhccc
Confidence 899999999999999887653
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.84 E-value=1.5e-21 Score=204.00 Aligned_cols=227 Identities=20% Similarity=0.304 Sum_probs=148.9
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH---
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ--- 250 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~--- 250 (431)
....++++|+++.+..+.+.+........ + ++..++|+||||||||++|+++|..++.+++.+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~~------~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTKS------L-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSSS------C-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhccc------C-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 44567899999999999876654322221 1 4578999999999999999999999999999998876533
Q ss_pred ------hhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC--CC--------C
Q psy15151 251 ------MFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG--FS--------S 314 (431)
Q Consensus 251 ------~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~--~~--------~ 314 (431)
.++|...+.+...|..+....| ||||||||.+...+ ..+.+..|+++|+.... +. .
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~-------~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~ 221 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDF-------RGDPSSAMLEVLDPEQNSSFSDHYIEETFD 221 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCB
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhh-------ccCHHHHHHHHHhhhhcceeecccCCeeec
Confidence 4667777777777877765555 99999999996543 12234555565543211 10 1
Q ss_pred CCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHH-----hcCCCCC---CCC---HHHHHHHcC-C
Q psy15151 315 TADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHS-----RKMNVSP---DVN---YEELSRSTD-D 382 (431)
Q Consensus 315 ~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l-----~~~~~~~---~~~---~~~la~~~~-g 382 (431)
..++++|+|||.++.++|+|++ ||+ +|.|++|+.+++.+|++.++ +...+.. .++ +..++.... .
T Consensus 222 ~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~ 298 (543)
T 3m6a_A 222 LSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTRE 298 (543)
T ss_dssp CSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCC
T ss_pred ccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChh
Confidence 1578999999999999999999 995 79999999999999999876 2233321 112 444454333 3
Q ss_pred CCHHHHHHH----HHHHHHHHHHh--CCCCcCHHHHHHHHHH
Q psy15151 383 FNGAQCKAV----CVEAGMIALRR--GAAIVTHEDFMDAIME 418 (431)
Q Consensus 383 ~s~~di~~l----~~~A~~~A~~~--~~~~It~ed~~~Al~~ 418 (431)
.+.+++++. |+.|...+... +...|+.+++.+++..
T Consensus 299 ~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 299 AGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred hchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 445555554 44444444433 3457999999998864
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.83 E-value=5.7e-20 Score=182.87 Aligned_cols=235 Identities=20% Similarity=0.264 Sum_probs=159.0
Q ss_pred cccCchHHHHHHHHHhhccccChHHHHh-cC-CCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh-hhcc
Q psy15151 179 DIGGLDKQIQELIEAVVLPMTHKEKFVN-LG-IQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM-FIGD 255 (431)
Q Consensus 179 ~i~G~~~~i~~l~~~i~~~~~~~~~~~~-~g-~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~-~~g~ 255 (431)
.|+|++.+++.+..++............ .+ ..++.++||+||||||||++|+++|..++.+|+.++|+.+... ++|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 4799999999999888543322111000 01 1256899999999999999999999999999999999988754 7777
Q ss_pred h-HHHHHHHHHHH----HhCCCeEEEEccccccccCCCCCCCcCcH---HHHHHHHHHHHhhc-------C---------
Q psy15151 256 G-AKLVRDAFALA----KEKAPAIIFIDELDAIGTKRFDSEKAGDR---EVQRTMLELLNQLD-------G--------- 311 (431)
Q Consensus 256 ~-~~~~~~lf~~a----~~~~p~vl~iDEid~l~~~r~~~~~~~~~---~~~~~l~~lL~~~~-------~--------- 311 (431)
. ...+..+|..+ ....++||||||||.+...+.+...+.+. .++..|+++|+... +
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55667777654 33456799999999998776443332222 26777888777210 0
Q ss_pred CCCCCCeEEEEEeCCC----------CC-----------------------------------CChhhhcCCCcceEEEc
Q psy15151 312 FSSTADIKVIAATNRV----------DI-----------------------------------LDPALLRSGRLDRKIEF 346 (431)
Q Consensus 312 ~~~~~~v~vI~ttn~~----------~~-----------------------------------l~~~l~r~gR~~~~i~~ 346 (431)
+-...++++|+++|.. .. +.|+|++ ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 1122455666666642 11 7889998 99999999
Q ss_pred CCCCHHHHHHHHHH----HH-------hcCCCC---CCCCHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhCCC-----
Q psy15151 347 PHPNEEARARIMQI----HS-------RKMNVS---PDVNYEELSR--STDDFNGAQCKAVCVEAGMIALRRGAA----- 405 (431)
Q Consensus 347 ~~p~~~~r~~Il~~----~l-------~~~~~~---~~~~~~~la~--~~~g~s~~di~~l~~~A~~~A~~~~~~----- 405 (431)
++|+.+++.+|+.. .+ ...... .+..++.|+. ....+++++|++++.++...+..+...
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~ 333 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVE 333 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCc
Confidence 99999999999875 21 111222 1122455664 345566799999999999888776421
Q ss_pred --CcCHHHHHHH
Q psy15151 406 --IVTHEDFMDA 415 (431)
Q Consensus 406 --~It~ed~~~A 415 (431)
.|+.+++.+.
T Consensus 334 ~~~I~~~~v~~~ 345 (363)
T 3hws_A 334 KVVIDESVIDGQ 345 (363)
T ss_dssp EEECHHHHTTCC
T ss_pred eeEEcHHHHhCc
Confidence 4666666543
No 42
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.83 E-value=4e-20 Score=176.47 Aligned_cols=223 Identities=18% Similarity=0.230 Sum_probs=149.6
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhc
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIG 254 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g 254 (431)
.....++|.+..++.+....... ...+...+..++.++||+||||||||++|+++|+..+.+|+.+++++. +.|
T Consensus 30 ~~~~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g 103 (272)
T 1d2n_A 30 YIMNGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIG 103 (272)
T ss_dssp TCTTCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTT
T ss_pred HHhcCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcC
Confidence 34567889988888777642211 122233334567899999999999999999999999999999988753 333
Q ss_pred ch----HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC-CCCCeEEEEEeCCCCC
Q psy15151 255 DG----AKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS-STADIKVIAATNRVDI 329 (431)
Q Consensus 255 ~~----~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~-~~~~v~vI~ttn~~~~ 329 (431)
.. ...++.+|..+....++||||||||.+++.+... .......++.|..+ +++.. ...+++||+|||.++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~---~~~~~~~~~~~~ii~ttn~~~~ 179 (272)
T 1d2n_A 104 FSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVL---LKKAPPQGRKLLIIGTTSRKDV 179 (272)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHH---TTCCCSTTCEEEEEEEESCHHH
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHH---hcCccCCCCCEEEEEecCChhh
Confidence 32 3557788888887889999999999997665322 12233333444333 33332 3456889999999988
Q ss_pred CCh-hhhcCCCcceEEEcCCCCH-HHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCC----CHHHHHHHHHHHHHHHHHhC
Q psy15151 330 LDP-ALLRSGRLDRKIEFPHPNE-EARARIMQIHSRKMNVSPDVNYEELSRSTDDF----NGAQCKAVCVEAGMIALRRG 403 (431)
Q Consensus 330 l~~-~l~r~gR~~~~i~~~~p~~-~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~----s~~di~~l~~~A~~~A~~~~ 403 (431)
+++ .+.+ ||+..+.+|+++. ++...++.. ...+. +.++..++..+.|+ +.+++.+++..|...+
T Consensus 180 l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~~~~-~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~---- 249 (272)
T 1d2n_A 180 LQEMEMLN--AFSTTIHVPNIATGEQLLEALEL---LGNFK-DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD---- 249 (272)
T ss_dssp HHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---HTCSC-HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC----
T ss_pred cchhhhhc--ccceEEcCCCccHHHHHHHHHHh---cCCCC-HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc----
Confidence 877 5555 9999999988876 555555543 22332 34577888888886 5677777766654322
Q ss_pred CCCcCHHHHHHHHHH
Q psy15151 404 AAIVTHEDFMDAIME 418 (431)
Q Consensus 404 ~~~It~ed~~~Al~~ 418 (431)
.....++|..++..
T Consensus 250 -~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 250 -PEYRVRKFLALLRE 263 (272)
T ss_dssp -GGGHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHH
Confidence 33455566555544
No 43
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.83 E-value=1.7e-19 Score=176.95 Aligned_cols=222 Identities=19% Similarity=0.182 Sum_probs=159.5
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh--hHh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL--VQM 251 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l--~~~ 251 (431)
...+.+++|++..++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++... ...
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHH
T ss_pred HHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhh
Confidence 44578899999999988776652 3689999999999999999999999999999887421 111
Q ss_pred hhcchHHH-HHHHHHHHHhC--CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc----C--CCCCCCeEEEE
Q psy15151 252 FIGDGAKL-VRDAFALAKEK--APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD----G--FSSTADIKVIA 322 (431)
Q Consensus 252 ~~g~~~~~-~~~lf~~a~~~--~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~----~--~~~~~~v~vI~ 322 (431)
+.|..... ....|. ...+ ..+||||||++.+ +...+..|++.++... + ...+.+++||+
T Consensus 88 l~g~~~~~~~~~~~~-~~~g~l~~~vl~iDEi~~~-----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 88 LIGTMIYNQHKGNFE-VKKGPVFSNFILADEVNRS-----------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp HHEEEEEETTTTEEE-EEECTTCSSEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred cCCceeecCCCCceE-eccCcccccEEEEEccccC-----------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 22211000 000000 0001 1269999999997 6778888888888632 1 11245678888
Q ss_pred EeCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC--------------------CCCC---HH
Q psy15151 323 ATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS--------------------PDVN---YE 374 (431)
Q Consensus 323 ttn~~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~--------------------~~~~---~~ 374 (431)
|+|..+ .+++++++ ||+..+.+++|+.+++.+|++.++...... -.++ +.
T Consensus 156 t~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 233 (331)
T 2r44_A 156 TQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEK 233 (331)
T ss_dssp EECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHH
T ss_pred ecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHH
Confidence 888554 38999999 999899999999999999999887643211 0011 33
Q ss_pred HHHHHc-------------------CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhh
Q psy15151 375 ELSRST-------------------DDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKK 424 (431)
Q Consensus 375 ~la~~~-------------------~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~ 424 (431)
.++... .|.+++.+..+++.|...|...++..|+.+|+.+++..+..++.
T Consensus 234 ~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 234 YIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRI 302 (331)
T ss_dssp HHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhc
Confidence 333321 25589999999999999999999999999999999999887654
No 44
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.82 E-value=9.1e-19 Score=160.02 Aligned_cols=201 Identities=21% Similarity=0.248 Sum_probs=148.7
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc-----CCceEEeehhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT-----KSTFLKLAGPQ 247 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~-----~~~~i~i~~~~ 247 (431)
+...|++++|.+..++.+...+... .+.+++|+||||||||++|+++++.+ ...++.++++.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 3577999999999999998887642 23459999999999999999999874 35677777754
Q ss_pred hhHhhhcchHHHHHHHHHHHH------hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15151 248 LVQMFIGDGAKLVRDAFALAK------EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321 (431)
Q Consensus 248 l~~~~~g~~~~~~~~lf~~a~------~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI 321 (431)
... ...+...+.... ...+.+|+|||+|.+ ....+..+..+++.. ..++.+|
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~l~~~l~~~-----~~~~~~i 136 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEMY-----SKSCRFI 136 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGS-----------CHHHHHHHHHHHHHT-----TTTEEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhc-----------CHHHHHHHHHHHHhc-----CCCCeEE
Confidence 321 122222222221 246789999999998 556667777777762 3567899
Q ss_pred EEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy15151 322 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIAL 400 (431)
Q Consensus 322 ~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~ 400 (431)
++||.+..+++++.+ |+. .+.|++|+.++..+++...+...+.. ++..+..++..+.| +.+.+.+++..++..+
T Consensus 137 ~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG- 211 (226)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-
T ss_pred EEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-
Confidence 999999999999999 887 89999999999999999888654433 12235567766654 5677777777666543
Q ss_pred HhCCCCcCHHHHHHHHH
Q psy15151 401 RRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 401 ~~~~~~It~ed~~~Al~ 417 (431)
..|+.+|+.+++.
T Consensus 212 ----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ----EVVDADTIYQITA 224 (226)
T ss_dssp ----SCBCHHHHHHHHH
T ss_pred ----ceecHHHHHHHhc
Confidence 5799999999875
No 45
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.82 E-value=4.6e-20 Score=178.93 Aligned_cols=207 Identities=20% Similarity=0.307 Sum_probs=150.2
Q ss_pred CCcccccCchHHHHHHHHHhhccc---cChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPM---THKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL 248 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~---~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l 248 (431)
....+++|++.+++.+...+.... .++. .|..++||+||||||||++|+++|..+ +.+++.++|+.+
T Consensus 14 ~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~-------~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 14 ELHKRVVGQDEAIRAVADAIRRARAGLKDPN-------RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHHHTCSCTT-------SCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 345678999999999998887542 1110 133579999999999999999999986 557999999865
Q ss_pred hH-----hhhcchHHHH-----HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCC----
Q psy15151 249 VQ-----MFIGDGAKLV-----RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS---- 314 (431)
Q Consensus 249 ~~-----~~~g~~~~~~-----~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~---- 314 (431)
.. .++|...+.. ..+.......+++||||||+|.+ +..++..|+++++.......
T Consensus 87 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~ 155 (311)
T 4fcw_A 87 MEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRT 155 (311)
T ss_dssp CSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCE
T ss_pred cccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCE
Confidence 32 3333221110 23444555566789999999998 77889999999987431111
Q ss_pred --CCCeEEEEEeCC--------------------------CCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcC-
Q psy15151 315 --TADIKVIAATNR--------------------------VDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKM- 365 (431)
Q Consensus 315 --~~~v~vI~ttn~--------------------------~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~- 365 (431)
..++++|+|||. ...++++|++ ||+..+.|++|+.+++..|++.++...
T Consensus 156 ~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~ 233 (311)
T 4fcw_A 156 VDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLR 233 (311)
T ss_dssp EECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHH
T ss_pred EECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 147789999998 4468899998 999999999999999999999876542
Q ss_pred ------CCC---CCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHH
Q psy15151 366 ------NVS---PDVNYEELSRSTD--DFNGAQCKAVCVEAGMIALR 401 (431)
Q Consensus 366 ------~~~---~~~~~~~la~~~~--g~s~~di~~l~~~A~~~A~~ 401 (431)
... ++..+..|+.... ..+.+++.++|..+...+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~ 280 (311)
T 4fcw_A 234 ARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 280 (311)
T ss_dssp HHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHH
T ss_pred HHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHH
Confidence 111 1222556666655 57789999999988776554
No 46
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.82 E-value=4.3e-20 Score=200.83 Aligned_cols=203 Identities=20% Similarity=0.264 Sum_probs=151.9
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCC----CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQ----PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~----~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~ 251 (431)
...+++|++.+++.+..++... ..|+. |..++||+||||||||++|+++|..++.++++++|+++...
T Consensus 456 l~~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 456 LKMLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMER 527 (758)
T ss_dssp HTTTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSS
T ss_pred HHhhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcch
Confidence 3467899999999998877642 22322 33479999999999999999999999999999999988653
Q ss_pred -----hhcchHHHH-----HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCC------C
Q psy15151 252 -----FIGDGAKLV-----RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS------T 315 (431)
Q Consensus 252 -----~~g~~~~~~-----~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~------~ 315 (431)
++|..++++ +.++..++..+++||||||||.+ ++++++.|+++++...-... .
T Consensus 528 ~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 528 HTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp SCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred hhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEec
Confidence 344433222 23566677778899999999997 88899999999987321111 2
Q ss_pred CCeEEEEEeCCCC-------------------------CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcC-----
Q psy15151 316 ADIKVIAATNRVD-------------------------ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKM----- 365 (431)
Q Consensus 316 ~~v~vI~ttn~~~-------------------------~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~----- 365 (431)
.+++||+|||... .++|+|++ ||+.+|.|++|+.+++..|+..++..+
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999754 57899999 999999999999999999999887632
Q ss_pred ------CCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Q psy15151 366 ------NVSPDVNYEELSRST--DDFNGAQCKAVCVEAGMIAL 400 (431)
Q Consensus 366 ------~~~~~~~~~~la~~~--~g~s~~di~~l~~~A~~~A~ 400 (431)
.++ +..+..|+... ..+..+++.++++.+...++
T Consensus 675 ~~~~~~~~~-~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 675 QKGVSLEVS-QEARNWLAEKGYDRAMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp HTTEEEEEC-HHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHH
T ss_pred HCCcEEEeC-HHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHH
Confidence 112 22255566543 23457888888887776543
No 47
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.80 E-value=6.3e-19 Score=175.77 Aligned_cols=213 Identities=18% Similarity=0.233 Sum_probs=155.3
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc-----------CCceEEeehh
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT-----------KSTFLKLAGP 246 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~-----------~~~~i~i~~~ 246 (431)
++++|.++.++.+...+...+.. ..+.+++|+||||||||++|+++++.+ +.+++.++|.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999999877643322 245789999999999999999999986 8899999987
Q ss_pred hhh-----------Hhhh-------cch-HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHH-HHHHH
Q psy15151 247 QLV-----------QMFI-------GDG-AKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRT-MLELL 306 (431)
Q Consensus 247 ~l~-----------~~~~-------g~~-~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~-l~~lL 306 (431)
... ..+. |.. ...+..++..+....+ ||+|||+|.+.... .+.. +..++
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC----------CCceeHHHHh
Confidence 543 1111 111 2334455555544444 99999999985431 1133 44444
Q ss_pred HhhcCCCCCCCeEEEEEeCCC---CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhc----CCCCCCCCHHHHHHH
Q psy15151 307 NQLDGFSSTADIKVIAATNRV---DILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK----MNVSPDVNYEELSRS 379 (431)
Q Consensus 307 ~~~~~~~~~~~v~vI~ttn~~---~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~----~~~~~~~~~~~la~~ 379 (431)
... .++.+|++||.+ +.+++.+.+ ||...+.|++|+.+++.+|+..++.. ..+. +..+..++..
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~ 230 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAI 230 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHH
Confidence 332 678899999987 678999998 88779999999999999999998763 2222 2225666666
Q ss_pred cCC--CCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q psy15151 380 TDD--FNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 380 ~~g--~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~ 421 (431)
+.+ .+.+.+.++|+.|...|. +...|+.+|+..|+..+..
T Consensus 231 ~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 231 SAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhc
Confidence 652 345777788999888775 5678999999999988764
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.80 E-value=4.1e-19 Score=181.11 Aligned_cols=203 Identities=22% Similarity=0.292 Sum_probs=149.3
Q ss_pred CCCcccccCchHHH---HHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 174 TEQYSDIGGLDKQI---QELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 174 ~~~~~~i~G~~~~i---~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
..+|++++|++..+ ..+...+... ...++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 57899999999998 6777666531 23679999999999999999999999999999987532
Q ss_pred hhhcchHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe--
Q psy15151 251 MFIGDGAKLVRDAFALAK----EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT-- 324 (431)
Q Consensus 251 ~~~g~~~~~~~~lf~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt-- 324 (431)
+...++.++..+. ...+.||||||||.+ +...+..|+..++. +.+++|++|
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l-----------~~~~q~~LL~~le~-------~~v~lI~att~ 143 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRF-----------NKSQQDAFLPHIED-------GTITFIGATTE 143 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-------TSCEEEEEESS
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhh-----------CHHHHHHHHHHHhc-------CceEEEecCCC
Confidence 3344555555544 346789999999998 34455667777764 457777777
Q ss_pred CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC--------CCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15151 325 NRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS--------PDVNYEELSRSTDDFNGAQCKAVCVEAG 396 (431)
Q Consensus 325 n~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~--------~~~~~~~la~~~~g~s~~di~~l~~~A~ 396 (431)
|....+++++++ |+. ++.|++|+.+++..++...+...... ++..+..|+..+. .+.+.+.+++..+.
T Consensus 144 n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~-Gd~R~lln~Le~a~ 219 (447)
T 3pvs_A 144 NPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVN-GDARRALNTLEMMA 219 (447)
T ss_dssp CGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHC-SCHHHHHHHHHHHH
T ss_pred CcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 455679999999 885 78899999999999999998762211 1122566777755 46688889999888
Q ss_pred HHHHHh--CCCCcCHHHHHHHHHH
Q psy15151 397 MIALRR--GAAIVTHEDFMDAIME 418 (431)
Q Consensus 397 ~~A~~~--~~~~It~ed~~~Al~~ 418 (431)
..+... +...||.+++.+++..
T Consensus 220 ~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 220 DMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HhcccccCCCCccCHHHHHHHHhh
Confidence 776422 3457999999988764
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.80 E-value=1.2e-18 Score=170.42 Aligned_cols=219 Identities=15% Similarity=0.179 Sum_probs=149.9
Q ss_pred CCCCccccc-Cch--HHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehh
Q psy15151 173 PTEQYSDIG-GLD--KQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGP 246 (431)
Q Consensus 173 ~~~~~~~i~-G~~--~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~ 246 (431)
|..+|++++ |.. .....+...+..+- ..+.+++|+||||||||++|+++++.+ +.+++++++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~~-----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENLG-----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTTT-----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCcC-----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 467888887 533 33444444333221 145789999999999999999999987 8899999999
Q ss_pred hhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 247 QLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 247 ~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
++...+.+.........|..... .+.||||||++.+..+ ...+..+..+++... ..+..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~---------~~~~~~l~~~l~~~~---~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGK---------ERTQIEFFHIFNTLY---LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTC---------HHHHHHHHHHHHHHH---HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCC---------hHHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 88766554433222222322222 3679999999998432 245666777766542 1234556666666
Q ss_pred CC---CCChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHH--
Q psy15151 327 VD---ILDPALLRSGRLD--RKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMI-- 398 (431)
Q Consensus 327 ~~---~l~~~l~r~gR~~--~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~-- 398 (431)
+. .+++++.+ ||. ..+.|++ +.+++.+|++.++...++. ++..+..|+..+ .+.+++.+++..+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~ 216 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGF 216 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCH
Confidence 55 68899999 886 7899999 9999999999998765543 122266778877 5678888888877765
Q ss_pred -HHH-hCCCCc-CHHHHHHHHHHHH
Q psy15151 399 -ALR-RGAAIV-THEDFMDAIMEVQ 420 (431)
Q Consensus 399 -A~~-~~~~~I-t~ed~~~Al~~~~ 420 (431)
++. .+...| +.+++.+++....
T Consensus 217 ~~l~~~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 217 EGLERKERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCHHHHHHHHHHHh
Confidence 111 223458 8899998887654
No 50
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.80 E-value=1.9e-20 Score=189.22 Aligned_cols=170 Identities=20% Similarity=0.238 Sum_probs=85.3
Q ss_pred cccccCchHHHHHHHHHhhccccChHHHHhcCCC-CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH-hhhc
Q psy15151 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQ-PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ-MFIG 254 (431)
Q Consensus 177 ~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~-~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~-~~~g 254 (431)
.++|+|++++++.+..++..+..++..+..++.. +++++||+||||||||++|+++|..++.+|+.++++.+.+ .|+|
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG 93 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CC
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceee
Confidence 4579999999999999998776666655544432 5689999999999999999999999999999999999888 5899
Q ss_pred c-hHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE-eCCCCCCCh
Q psy15151 255 D-GAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAA-TNRVDILDP 332 (431)
Q Consensus 255 ~-~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~t-tn~~~~l~~ 332 (431)
. .+..++.+|+.+... +++||++.+.... . +....+++.+++..++++.....+ +++ ||+++.+++
T Consensus 94 ~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~---~---~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~ 161 (444)
T 1g41_A 94 KEVDSIIRDLTDSAMKL----VRQQEIAKNRARA---E---DVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRK 161 (444)
T ss_dssp CCTHHHHHHHHHHHHHH----HHHHHHHSCC-------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHhc----chhhhhhhhhccc---h---hhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHH
Confidence 5 788999999988764 4589988764332 1 112236677888888887665554 444 999999999
Q ss_pred hhhcCCCcceEEEcCCCCHH-HHHHHH
Q psy15151 333 ALLRSGRLDRKIEFPHPNEE-ARARIM 358 (431)
Q Consensus 333 ~l~r~gR~~~~i~~~~p~~~-~r~~Il 358 (431)
+++|+||||+.|+++.|+.. .+.+|+
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhh
Confidence 99999999999999999987 677776
No 51
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.79 E-value=2.6e-18 Score=175.12 Aligned_cols=220 Identities=16% Similarity=0.231 Sum_probs=154.6
Q ss_pred CCCCCccccc-CchHHH--HHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc-----CCceEEe
Q psy15151 172 RPTEQYSDIG-GLDKQI--QELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT-----KSTFLKL 243 (431)
Q Consensus 172 ~~~~~~~~i~-G~~~~i--~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~-----~~~~i~i 243 (431)
.|..+|++++ |..... ..+...+.. + + .+.+++|+||||||||+||+++++.+ +.+++++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~----~------~--~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKH----P------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHS----T------T--SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhC----C------C--CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 3566899987 654433 223222221 1 1 15789999999999999999999987 7889999
Q ss_pred ehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q psy15151 244 AGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAA 323 (431)
Q Consensus 244 ~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~t 323 (431)
++..+...+.+.........|.......+.||||||++.+..+ ...+..++.+++.+.. .+..+||++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~---------~~~q~~l~~~l~~l~~---~~~~iIitt 234 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK---------TGVQTELFHTFNELHD---SGKQIVICS 234 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC---------HHHHHHHHHHHHHHHT---TTCEEEEEE
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC---------hHHHHHHHHHHHHHHH---CCCeEEEEE
Confidence 9988766554332221112333333336789999999998432 2456677777766532 234444544
Q ss_pred eCCCCC---CChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHHhcCC--CCCCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15151 324 TNRVDI---LDPALLRSGRLD--RKIEFPHPNEEARARIMQIHSRKMN--VSPDVNYEELSRSTDDFNGAQCKAVCVEAG 396 (431)
Q Consensus 324 tn~~~~---l~~~l~r~gR~~--~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~~~~~la~~~~g~s~~di~~l~~~A~ 396 (431)
.+.+.. +++++++ ||. ..+.+++|+.+++.+|+...+...+ +++++ +..|+..+. .+.+++..++..+.
T Consensus 235 ~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~-l~~la~~~~-gn~R~l~~~L~~~~ 310 (440)
T 2z4s_A 235 DREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV-LNFVAENVD-DNLRRLRGAIIKLL 310 (440)
T ss_dssp SSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH-HHHHHHHCC-SCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcC-CCHHHHHHHHHHHH
Confidence 444444 7899999 886 7899999999999999998886433 33333 677887776 57899999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHH
Q psy15151 397 MIALRRGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 397 ~~A~~~~~~~It~ed~~~Al~~~~ 420 (431)
..|...+. .|+.+++.+++....
T Consensus 311 ~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 311 VYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred HHHHHhCC-CCCHHHHHHHHHHHh
Confidence 88876664 699999999988765
No 52
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.79 E-value=3.2e-18 Score=170.02 Aligned_cols=226 Identities=21% Similarity=0.248 Sum_probs=158.9
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc------CCceEEeehhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT------KSTFLKLAGPQ 247 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~------~~~~i~i~~~~ 247 (431)
....++++|.++.++.+...+...+.. ..+..++|+||||||||++++++++.. +.+++.++|..
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 445588999999999998877643322 256789999999999999999999987 88899999864
Q ss_pred hh------Hhh----------hcc-hHHHHHHHHHHHHhCC-CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhh
Q psy15151 248 LV------QMF----------IGD-GAKLVRDAFALAKEKA-PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL 309 (431)
Q Consensus 248 l~------~~~----------~g~-~~~~~~~lf~~a~~~~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~ 309 (431)
.. ... .|. .......++..+.... |.||+|||++.+.... +.+ .+..++..+
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-------~~~---~l~~l~~~~ 156 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-------NDD---ILYKLSRIN 156 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-------CST---HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-------cCH---HHHHHhhch
Confidence 32 111 111 1223445555555443 8999999999985432 122 344444444
Q ss_pred cCCCCCCCeEEEEEeCCC---CCCChhhhcCCCcc-eEEEcCCCCHHHHHHHHHHHHhcCCCCCCC---CHHHHHHHcCC
Q psy15151 310 DGFSSTADIKVIAATNRV---DILDPALLRSGRLD-RKIEFPHPNEEARARIMQIHSRKMNVSPDV---NYEELSRSTDD 382 (431)
Q Consensus 310 ~~~~~~~~v~vI~ttn~~---~~l~~~l~r~gR~~-~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~---~~~~la~~~~g 382 (431)
+.. ...++.+|++||.+ ..+++.+.+ ||. ..+.|++++.++..+++...+........+ .+..++..+..
T Consensus 157 ~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (386)
T 2qby_A 157 SEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAR 233 (386)
T ss_dssp HSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHH
T ss_pred hhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 332 34678899999977 457888888 775 589999999999999999877532111112 24455655541
Q ss_pred --CCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHH
Q psy15151 383 --FNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 383 --~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~ 421 (431)
.+++.+.++|..|+..|...+...|+.+|+..|+..+..
T Consensus 234 ~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 234 EHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 456778889999999998888889999999999988764
No 53
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.79 E-value=6.4e-18 Score=156.16 Aligned_cols=201 Identities=16% Similarity=0.234 Sum_probs=146.6
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce-------------
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF------------- 240 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~------------- 240 (431)
...|++++|.+..++.+...+... ..+..++|+||||||||++++++++......
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 567889999999999998877631 1335799999999999999999998764321
Q ss_pred -----------EEeehhhhhHhhhcchHHHHHHHHHHHH----hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHH
Q psy15151 241 -----------LKLAGPQLVQMFIGDGAKLVRDAFALAK----EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 305 (431)
Q Consensus 241 -----------i~i~~~~l~~~~~g~~~~~~~~lf~~a~----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 305 (431)
+.++... ......++.++..+. ...+.+|+|||+|.+ +...+..++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~~~~~~l~~~ 149 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALLKT 149 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CHHHHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cHHHHHHHHHH
Confidence 1111110 012233444554432 234789999999998 55666667666
Q ss_pred HHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCC
Q psy15151 306 LNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFN 384 (431)
Q Consensus 306 L~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s 384 (431)
++. ...++.+|++||.+..+++.+.+ |+ ..+.+++|+.++..+++..++...+.. ++..+..++..+.| +
T Consensus 150 l~~-----~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~ 220 (250)
T 1njg_A 150 LEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S 220 (250)
T ss_dssp HHS-----CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-C
T ss_pred Hhc-----CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-C
Confidence 653 24678899999999999999998 76 689999999999999999888754433 12236678888866 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 385 GAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 385 ~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
++.+.+++..|... +...|+.+|+.+++
T Consensus 221 ~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 221 LRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 88899999887543 33479999999875
No 54
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.79 E-value=1.1e-18 Score=174.21 Aligned_cols=237 Identities=19% Similarity=0.193 Sum_probs=149.8
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHH-----------------hcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFV-----------------NLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF 240 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~-----------------~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~ 240 (431)
+.|+|++.+++.+..++..+........ .-...++.++||+||||||||++|+++|+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4689999999999988753322221100 01123567899999999999999999999999999
Q ss_pred EEeehhhhh-Hhhhcch-HHHHHHHHHHH----HhCCCeEEEEccccccccCCCCCC---CcCcHHHHHHHHHHHHhhcC
Q psy15151 241 LKLAGPQLV-QMFIGDG-AKLVRDAFALA----KEKAPAIIFIDELDAIGTKRFDSE---KAGDREVQRTMLELLNQLDG 311 (431)
Q Consensus 241 i~i~~~~l~-~~~~g~~-~~~~~~lf~~a----~~~~p~vl~iDEid~l~~~r~~~~---~~~~~~~~~~l~~lL~~~~~ 311 (431)
+.++|+.+. ..+.|.. ...+..++..+ ....++||||||+|.+...+.... ......++..|+++++....
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 3455553 34455555432 223567999999999976642211 11223477888888874210
Q ss_pred -C---------------CCCCCeEEEEEeCC-----------------------------------------CCCCChhh
Q psy15151 312 -F---------------SSTADIKVIAATNR-----------------------------------------VDILDPAL 334 (431)
Q Consensus 312 -~---------------~~~~~v~vI~ttn~-----------------------------------------~~~l~~~l 334 (431)
+ -...++++|+++|. ...+.|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 0 01246678888772 11367888
Q ss_pred hcCCCcceEEEcCCCCHHHHHHHHHH----H-------HhcCCCC---CCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH
Q psy15151 335 LRSGRLDRKIEFPHPNEEARARIMQI----H-------SRKMNVS---PDVNYEELSRSTD--DFNGAQCKAVCVEAGMI 398 (431)
Q Consensus 335 ~r~gR~~~~i~~~~p~~~~r~~Il~~----~-------l~~~~~~---~~~~~~~la~~~~--g~s~~di~~l~~~A~~~ 398 (431)
.+ ||+.++.|++++.++...|+.. . +...... ++..+..|+.... ..+.+.+.+++..+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 88 9999999999999999999862 1 1111111 1122555666533 35679999999988887
Q ss_pred HHHhCC------CCcCHHHHHHHH
Q psy15151 399 ALRRGA------AIVTHEDFMDAI 416 (431)
Q Consensus 399 A~~~~~------~~It~ed~~~Al 416 (431)
++.+.. ..|+.+++..+.
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHhhccCCCCCEEEEeHHHhcCCC
Confidence 766422 258999887644
No 55
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4.1e-19 Score=172.52 Aligned_cols=215 Identities=8% Similarity=0.108 Sum_probs=150.1
Q ss_pred ccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEeehhhhh
Q psy15151 180 IGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKLAGPQLV 249 (431)
Q Consensus 180 i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i~~~~l~ 249 (431)
+.|.++++..+...+...+... .+.+++|+||||||||++++++++++ ...+++++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~---------~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSS---------QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---------CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhcCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 7789999999988877554433 67899999999999999999999987 3467889986542
Q ss_pred H----------hhhc------chHHHHHHHHHHH--HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC
Q psy15151 250 Q----------MFIG------DGAKLVRDAFALA--KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 311 (431)
Q Consensus 250 ~----------~~~g------~~~~~~~~lf~~a--~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~ 311 (431)
+ .+.| .....+..+|..+ ....+.||+|||+|.+. .+..|+.+++...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~- 158 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS- 158 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc-
Confidence 2 2223 3455677778765 34567899999999995 1356667776432
Q ss_pred CCCCCCeEEEEEeCCCCCC----ChhhhcCCCcc-eEEEcCCCCHHHHHHHHHHHHhcCCCC------------------
Q psy15151 312 FSSTADIKVIAATNRVDIL----DPALLRSGRLD-RKIEFPHPNEEARARIMQIHSRKMNVS------------------ 368 (431)
Q Consensus 312 ~~~~~~v~vI~ttn~~~~l----~~~l~r~gR~~-~~i~~~~p~~~~r~~Il~~~l~~~~~~------------------ 368 (431)
....+++||+++|..+.. ++++.+ ||. .+|.|++++.++..+|++.++....-.
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~ 235 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIR 235 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 245689999999988754 344556 786 589999999999999999988764211
Q ss_pred --------C-------CCC---HHHHHHHcC--CCCHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHHHHH
Q psy15151 369 --------P-------DVN---YEELSRSTD--DFNGAQCKAVCVEAGMIALRR---------GAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 369 --------~-------~~~---~~~la~~~~--g~s~~di~~l~~~A~~~A~~~---------~~~~It~ed~~~Al~~~ 419 (431)
+ .++ +..+|.... ....+..-.+|+.|+..|.++ +...||.+.+.+++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~ 315 (318)
T 3te6_A 236 EGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEA 315 (318)
T ss_dssp -------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHH
T ss_pred ccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHH
Confidence 0 022 334444311 123344557788999888664 23467777777777665
Q ss_pred H
Q psy15151 420 Q 420 (431)
Q Consensus 420 ~ 420 (431)
.
T Consensus 316 ~ 316 (318)
T 3te6_A 316 I 316 (318)
T ss_dssp H
T ss_pred h
Confidence 3
No 56
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.77 E-value=1.1e-17 Score=166.65 Aligned_cols=223 Identities=15% Similarity=0.148 Sum_probs=159.1
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCC--CceeeCCCCCchHHHHHHHHHHc----CCceEEeehhhh
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPK--GVLLYGPPGTGKTLLARACAAQT----KSTFLKLAGPQL 248 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~--~vLl~GppGtGKT~lakala~~~----~~~~i~i~~~~l 248 (431)
...++++|.++.++.+...+...+... .+. +++|+||||||||++++++++.. +..++.++|...
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~---------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNP---------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHST---------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 344789999999999998876533221 334 79999999999999999999987 567888987543
Q ss_pred hH------hh---h-------cchH-HHHHHHHHHHHh-CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 249 VQ------MF---I-------GDGA-KLVRDAFALAKE-KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 249 ~~------~~---~-------g~~~-~~~~~lf~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
.+ .. + |... .....+...+.. ..|.||+|||+|.+ +...+..|..+++...
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEAD 153 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCC
Confidence 21 11 1 1111 222233333322 45889999999998 4555566655554321
Q ss_pred CCCCCCCeEEEEEeCCC---CCCChhhhcCCCcce-EEEcCCCCHHHHHHHHHHHHhcCCCC---CCCCHHHHHHHcC--
Q psy15151 311 GFSSTADIKVIAATNRV---DILDPALLRSGRLDR-KIEFPHPNEEARARIMQIHSRKMNVS---PDVNYEELSRSTD-- 381 (431)
Q Consensus 311 ~~~~~~~v~vI~ttn~~---~~l~~~l~r~gR~~~-~i~~~~p~~~~r~~Il~~~l~~~~~~---~~~~~~~la~~~~-- 381 (431)
. ....++.+|+++|.+ ..+++.+.+ ||.. .+.|++++.++..+++...+...... ++..+..++..+.
T Consensus 154 ~-~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (389)
T 1fnn_A 154 K-LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQ 230 (389)
T ss_dssp H-HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBS
T ss_pred C-CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Confidence 1 001578899999987 678888888 8765 89999999999999999887641111 1223566777773
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q psy15151 382 ------DFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 382 ------g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~ 420 (431)
+.+++.+.++|+.|...|..++...|+.+|+..|+..+.
T Consensus 231 ~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 231 TPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp STTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 346788999999999999888888999999999988764
No 57
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=1.4e-17 Score=164.12 Aligned_cols=206 Identities=19% Similarity=0.208 Sum_probs=149.0
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC------CceEEeehh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK------STFLKLAGP 246 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~------~~~i~i~~~ 246 (431)
.+..|++++|+++.++.+...+... .+.++||+||||||||++|+++|+.++ ..++.++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 3668999999999999998877531 224599999999999999999999754 357777776
Q ss_pred hhhHhhhcchHHHHHHHHHHHH----------------hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc
Q psy15151 247 QLVQMFIGDGAKLVRDAFALAK----------------EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 310 (431)
Q Consensus 247 ~l~~~~~g~~~~~~~~lf~~a~----------------~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~ 310 (431)
+.. +...++..+.... ...+.||||||+|.+ +...+..|+.+++..
T Consensus 99 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l-----------~~~~~~~Ll~~le~~- 160 (353)
T 1sxj_D 99 DER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM-----------TADAQSALRRTMETY- 160 (353)
T ss_dssp SCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGS-----------CHHHHHHHHHHHHHT-
T ss_pred ccc------chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCcc-----------CHHHHHHHHHHHHhc-
Confidence 531 1112222111111 124579999999998 566778888888763
Q ss_pred CCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHH
Q psy15151 311 GFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCK 389 (431)
Q Consensus 311 ~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~ 389 (431)
..++.+|+++|.+..+.+++.+ |+. .+.|++|+.++...++...+...++. ++..+..++..+.| +.+.+.
T Consensus 161 ----~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~ 232 (353)
T 1sxj_D 161 ----SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGI 232 (353)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHH
T ss_pred ----CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 3456788899999999999999 885 89999999999999999887654432 12236677777765 457777
Q ss_pred HHHHHHHHHHHHhCCC-CcCHHHHHHHHH
Q psy15151 390 AVCVEAGMIALRRGAA-IVTHEDFMDAIM 417 (431)
Q Consensus 390 ~l~~~A~~~A~~~~~~-~It~ed~~~Al~ 417 (431)
++++.+...+.+.+.. .|+.+|+.+++.
T Consensus 233 ~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 233 TLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 7777777666544433 799999887654
No 58
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.77 E-value=9e-18 Score=155.86 Aligned_cols=206 Identities=14% Similarity=0.113 Sum_probs=143.5
Q ss_pred CCCCcccccCc---hHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC---CceEEeehh
Q psy15151 173 PTEQYSDIGGL---DKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK---STFLKLAGP 246 (431)
Q Consensus 173 ~~~~~~~i~G~---~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~---~~~i~i~~~ 246 (431)
|..+|++++|. ...+..+...+.. ..+.+++|+||||||||++|++++..+. .+++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 45678888872 3555655554442 1457899999999999999999998754 678889888
Q ss_pred hhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 247 QLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 247 ~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
++...+... +.. ...+.+|+|||++.+.. ....+..+..+++.... .+.+.+|+++|.
T Consensus 90 ~~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~~~~---~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTAL--------LEG--LEQFDLICIDDVDAVAG---------HPLWEEAIFDLYNRVAE---QKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGGG--------GTT--GGGSSEEEEETGGGGTT---------CHHHHHHHHHHHHHHHH---HCSCEEEEEESS
T ss_pred HHHHHHHHH--------HHh--ccCCCEEEEeccccccC---------CHHHHHHHHHHHHHHHH---cCCCeEEEEcCC
Confidence 765543211 111 13467999999999832 22335667777665421 233335555553
Q ss_pred -CC---CCChhhhcCCCcc--eEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 327 -VD---ILDPALLRSGRLD--RKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 327 -~~---~l~~~l~r~gR~~--~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
+. .+.+.+.+ ||. ..+.|++|+.+++.+++..++...+..- +..+..++..+. .+.+++.+++..+...|
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-g~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMA-RDLRTLFDVLDRLDKAS 224 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHH
Confidence 33 45688888 876 8999999999999999999887554431 222566777665 47899999999999888
Q ss_pred HHhCCCCcCHHHHHHHHH
Q psy15151 400 LRRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 400 ~~~~~~~It~ed~~~Al~ 417 (431)
...+ ..|+.+++.+++.
T Consensus 225 ~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 225 MVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHT-CCCCHHHHHHHHT
T ss_pred HHhC-CCCcHHHHHHHhh
Confidence 6665 4599999998874
No 59
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.77 E-value=4.2e-18 Score=166.44 Aligned_cols=200 Identities=17% Similarity=0.201 Sum_probs=138.3
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
+.+|++++|+++.++.+...+... ..+..+|++||||||||++|+++|+.++.+++.++++...
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKG------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTT------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----
Confidence 578999999999999998887721 2446678889999999999999999999999999987632
Q ss_pred cchHHHHHHHHHH-HHh----CCCeEEEEccccccccCCCCCCCcCc-HHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 254 GDGAKLVRDAFAL-AKE----KAPAIIFIDELDAIGTKRFDSEKAGD-REVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 254 g~~~~~~~~lf~~-a~~----~~p~vl~iDEid~l~~~r~~~~~~~~-~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
...++..+.. +.. +.+.||||||+|.+ . .+.+..|+.+++.. ..++.+|++||.+
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l-----------~~~~~~~~L~~~le~~-----~~~~~iI~~~n~~ 146 (324)
T 3u61_B 86 ---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRS-----------GLAESQRHLRSFMEAY-----SSNCSIIITANNI 146 (324)
T ss_dssp ---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCG-----------GGHHHHHHHHHHHHHH-----GGGCEEEEEESSG
T ss_pred ---HHHHHHHHHHHHhhcccCCCCeEEEEECCccc-----------CcHHHHHHHHHHHHhC-----CCCcEEEEEeCCc
Confidence 2334443333 322 25789999999998 4 56778888888764 2567899999999
Q ss_pred CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHH-------hc--CCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy15151 328 DILDPALLRSGRLDRKIEFPHPNEEARARIMQIHS-------RK--MNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMI 398 (431)
Q Consensus 328 ~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l-------~~--~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~ 398 (431)
..+++++.+ || ..+.|++|+.+++.+|++... .. ..+++...+..++..+.|.. +++.+.+..++
T Consensus 147 ~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~-R~a~~~L~~~~-- 220 (324)
T 3u61_B 147 DGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF-RKTIGELDSYS-- 220 (324)
T ss_dssp GGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT-THHHHHHHHHG--
T ss_pred cccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH-HHHHHHHHHHh--
Confidence 999999999 88 479999999999776655432 22 22222033667777765443 44555555444
Q ss_pred HHHhCCCCcCHHHHHHHHHH
Q psy15151 399 ALRRGAAIVTHEDFMDAIME 418 (431)
Q Consensus 399 A~~~~~~~It~ed~~~Al~~ 418 (431)
....|+.+++..++..
T Consensus 221 ----~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 221 ----SKGVLDAGILSLVTND 236 (324)
T ss_dssp ----GGTCBCC---------
T ss_pred ----ccCCCCHHHHHHHhCC
Confidence 2334777777665443
No 60
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=1.7e-18 Score=154.57 Aligned_cols=159 Identities=23% Similarity=0.337 Sum_probs=119.7
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i 243 (431)
...|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 46789999999999999887653 145789999999999999999999985 6788999
Q ss_pred ehhhhh--HhhhcchHHHHHHHHHHHH-hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15151 244 AGPQLV--QMFIGDGAKLVRDAFALAK-EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKV 320 (431)
Q Consensus 244 ~~~~l~--~~~~g~~~~~~~~lf~~a~-~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~v 320 (431)
++..+. ..+.|.....+..++..+. ...+.||+|||+|.+...+... .....+..+..+++. .++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD---GAMDAGNMLKPALAR-------GELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHHT-------TSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc---chHHHHHHHHHhhcc-------CCeEE
Confidence 998776 3344555666777777554 4557899999999996543211 122234555555532 46778
Q ss_pred EEEeCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHH
Q psy15151 321 IAATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARIM 358 (431)
Q Consensus 321 I~ttn~~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il 358 (431)
|++||.+. .+++++.+ ||. .+.+++|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 99998776 68999999 998 6999999999998875
No 61
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.76 E-value=5e-18 Score=161.22 Aligned_cols=208 Identities=21% Similarity=0.237 Sum_probs=134.1
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC---CceEEeehhhhhHh
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK---STFLKLAGPQLVQM 251 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~---~~~i~i~~~~l~~~ 251 (431)
.+|++++|.+..+..+.+.+..... .+.++||+||||||||++|++++..+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 4688999999999999887765332 347899999999999999999999864 68999999876332
Q ss_pred -----hhcchHHHH-------HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC------CC
Q psy15151 252 -----FIGDGAKLV-------RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG------FS 313 (431)
Q Consensus 252 -----~~g~~~~~~-------~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~------~~ 313 (431)
++|...+.. ...+..+ ..++|||||||.+ +.+.+..|+++++...- ..
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----------PMMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGS-----------CHHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhc-----------CHHHHHHHHHHHHhCCeecCCCccc
Confidence 233221111 1123322 3469999999998 67788889999886320 01
Q ss_pred CCCCeEEEEEeCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHHh----cCCCCC--CCCH---H
Q psy15151 314 STADIKVIAATNRV-------DILDPALLRSGRLD-RKIEFPHPNE--EARARIMQIHSR----KMNVSP--DVNY---E 374 (431)
Q Consensus 314 ~~~~v~vI~ttn~~-------~~l~~~l~r~gR~~-~~i~~~~p~~--~~r~~Il~~~l~----~~~~~~--~~~~---~ 374 (431)
...++.+|+|||.+ ..+.+++.+ ||. ..+.+|++.. ++...++..+++ ..+... .++. .
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~ 215 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE 215 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH
Confidence 13468899999974 347888988 885 4677777765 556666555443 233221 2333 3
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Q psy15151 375 ELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDF 412 (431)
Q Consensus 375 ~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~ 412 (431)
.+.......+.+++.+++..+...+ ....|+.+|+
T Consensus 216 ~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 216 TLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 3444444456789999999887665 3445666655
No 62
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.76 E-value=9.2e-17 Score=157.93 Aligned_cols=217 Identities=18% Similarity=0.252 Sum_probs=158.7
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI 253 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~ 253 (431)
...+++++|++..++.+...+..... .| .++.+++|+||||||||+|++++|+.++.++...+++.+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 45788999999988888776653211 11 24578999999999999999999999998887766654321
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC-------CC------CCCCeEE
Q psy15151 254 GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG-------FS------STADIKV 320 (431)
Q Consensus 254 g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~-------~~------~~~~v~v 320 (431)
...+..++.. ...+.|+||||++.+ .+.++..++..+..... .. ....+.+
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l-----------~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRL-----------NKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGC-----------CHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhc-----------CHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 1223333322 234579999999998 33455666555543210 00 0124678
Q ss_pred EEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 321 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD-VNYEELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 321 I~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
+++|+.+..+++.+++ ||...+.|++|+.+++.+|++...+..+..-+ .....|+..+.| +++.+.++++.+...|
T Consensus 154 i~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 154 VGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHH
Confidence 8899999999999999 99989999999999999999988776554421 225667777765 5688999999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHH
Q psy15151 400 LRRGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 400 ~~~~~~~It~ed~~~Al~~~~ 420 (431)
..++...||.+++.+|+..+.
T Consensus 231 ~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHHHT
T ss_pred HHcCCCCcCHHHHHHHHHHhC
Confidence 888888899999999998864
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.75 E-value=2.9e-17 Score=178.54 Aligned_cols=221 Identities=23% Similarity=0.277 Sum_probs=162.0
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i 243 (431)
...|++++|.++.++.+.+.+... .+.++||+||||||||++|+++|... +..++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~~-------------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS-------------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHhcc-------------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 457889999999999998876532 45789999999999999999999975 5667888
Q ss_pred ehhhhh--HhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15151 244 AGPQLV--QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321 (431)
Q Consensus 244 ~~~~l~--~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI 321 (431)
++..+. .++.|..+..++.+|..+....++||||||+|.+++.+... .+..+..+.|.. .-..+++.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~~~L~~-------~l~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKP-------LLSSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHHHHHSS-------CSSSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHHHHHHH-------HHhCCCeEEE
Confidence 877776 45778888899999999988788999999999997765321 122232332222 2235678899
Q ss_pred EEeCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhc------CCCCCCCCHHHHHHHc-----CCCCH
Q psy15151 322 AATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK------MNVSPDVNYEELSRST-----DDFNG 385 (431)
Q Consensus 322 ~ttn~~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~------~~~~~~~~~~~la~~~-----~g~s~ 385 (431)
++||.++ .+++++.+ ||. .+.|+.|+.+++.+|++..... ..+. +..+..++..+ ..+.+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~-~~al~~~~~~s~~~i~~~~lp 395 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT-AKAVRAAVELAVKYINDRHLP 395 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHCTTSCTT
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhcccccCc
Confidence 9998643 47889999 997 7999999999999999977654 2222 11244455443 33456
Q ss_pred HHHHHHHHHHHHHHHH----hCCCCcCHHHHHHHHHHHH
Q psy15151 386 AQCKAVCVEAGMIALR----RGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 386 ~di~~l~~~A~~~A~~----~~~~~It~ed~~~Al~~~~ 420 (431)
..+..++.+|+..+.. .....|+.+|+..++..+.
T Consensus 396 ~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 7788889888876655 2356799999999988753
No 64
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.74 E-value=7.1e-18 Score=173.29 Aligned_cols=206 Identities=21% Similarity=0.300 Sum_probs=142.0
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i 243 (431)
...++.|+|+++.++.+...+... ...++||+||||||||++|+++|..+ +.+++.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~-------------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRR-------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCS-------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 457889999999999998877641 34689999999999999999999985 7789999
Q ss_pred ehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q psy15151 244 AGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAA 323 (431)
Q Consensus 244 ~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~t 323 (431)
+++ ..+.|.....++.+|..+....+.||||| . ..+.++.|..+| ..+.+.+|++
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~-----------~~~a~~~L~~~L-------~~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----A-----------AIDASNILKPSL-------ARGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC----C-------------------CCCT-------TSSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----C-----------chhHHHHHHHhh-------cCCCEEEEec
Confidence 987 66778777888899999998889999999 1 223334444333 2467899999
Q ss_pred eCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCC--C---CHHHHHHHcCC-----CCHHHH
Q psy15151 324 TNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPD--V---NYEELSRSTDD-----FNGAQC 388 (431)
Q Consensus 324 tn~~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~--~---~~~~la~~~~g-----~s~~di 388 (431)
||.++ .+++++.+ ||. .|.|+.|+.+++..|++.++..+..... + .+..++..+.+ +.+...
T Consensus 298 t~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~a 374 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (468)
T ss_dssp CCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHH
Confidence 99987 58999999 997 5999999999999999988765322111 2 24445544333 345577
Q ss_pred HHHHHHHHHHHHHhC-CCCcCHHHHHHHHHHHH
Q psy15151 389 KAVCVEAGMIALRRG-AAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 389 ~~l~~~A~~~A~~~~-~~~It~ed~~~Al~~~~ 420 (431)
..++.+|+..+..+. ...-...++...+..+.
T Consensus 375 i~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l~ 407 (468)
T 3pxg_A 375 IDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVR 407 (468)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence 788887776655543 23345566666665554
No 65
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.74 E-value=1.6e-18 Score=178.42 Aligned_cols=211 Identities=17% Similarity=0.199 Sum_probs=141.6
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehhh-hhHhhhc
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGPQ-LVQMFIG 254 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~~-l~~~~~g 254 (431)
..|+|+++.++.+..++. .+.++||+||||||||++|+++|..++. +|..+.+.. ..+.++|
T Consensus 22 ~~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 568999999988876654 3468999999999999999999998743 555555532 1233333
Q ss_pred chH-HH--HHHHHHHHHhC---CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc----CCCC-CCCeEEEEE
Q psy15151 255 DGA-KL--VRDAFALAKEK---APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD----GFSS-TADIKVIAA 323 (431)
Q Consensus 255 ~~~-~~--~~~lf~~a~~~---~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~----~~~~-~~~v~vI~t 323 (431)
... .. -...|..+..+ .++|||||||+.+ ++..+..|++++++.. +... ....++|+|
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGC-----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh-----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 211 00 11223222222 3679999999987 7788999999998632 1111 122346888
Q ss_pred eCCCCC---CChhhhcCCCcceEEEcCCCCH-HHHHHHHHHHHhc-------------------------CCCCCCCCHH
Q psy15151 324 TNRVDI---LDPALLRSGRLDRKIEFPHPNE-EARARIMQIHSRK-------------------------MNVSPDVNYE 374 (431)
Q Consensus 324 tn~~~~---l~~~l~r~gR~~~~i~~~~p~~-~~r~~Il~~~l~~-------------------------~~~~~~~~~~ 374 (431)
||.... +.+++++ ||...+.+++|+. +++..|+..+... ..+++++ .+
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v-~e 232 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV-FE 232 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-HH
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-HH
Confidence 885332 4468999 9999999999987 7788888765421 1111111 33
Q ss_pred HHHHHc---------CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q psy15151 375 ELSRST---------DDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIME 418 (431)
Q Consensus 375 ~la~~~---------~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~ 418 (431)
.++... .|.+++.+..+++.|...|..+++..|+.+|+. ++..
T Consensus 233 ~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~ 284 (500)
T 3nbx_X 233 LIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKD 284 (500)
T ss_dssp HHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGG
T ss_pred HHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHh
Confidence 344333 478999999999999999999999999999987 4443
No 66
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=1.2e-17 Score=173.70 Aligned_cols=222 Identities=17% Similarity=0.227 Sum_probs=141.9
Q ss_pred CCCCCcccccCchHHHHHHHHHhhcccc-ChHHHHhcCCC---CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMT-HKEKFVNLGIQ---PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQ 247 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~-~~~~~~~~g~~---~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~ 247 (431)
..+..|++++|++..++.+..++..... .+..|...|.. +++++||+||||||||++|+++|++++.+++.+++++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3466899999999999999998875321 12233333332 5578999999999999999999999999999999987
Q ss_pred hhHhhhcchH-------HHHHHHHHHH-----HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCC
Q psy15151 248 LVQMFIGDGA-------KLVRDAFALA-----KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSST 315 (431)
Q Consensus 248 l~~~~~g~~~-------~~~~~lf~~a-----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~ 315 (431)
+......... ..+..+|..+ ....+.||||||+|.+.... ......|..+++.. .
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~~l~~L~~~l~~~-----~ 179 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFCRKT-----S 179 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHHHHC-----S
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HHHHHHHHHHHHhc-----C
Confidence 6443211100 0012223322 23567899999999985431 12335566666541 2
Q ss_pred CCeEEEEEeCCC--CCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhc--CCCCCCCCHHHHHHHcCCCCHHHHHHH
Q psy15151 316 ADIKVIAATNRV--DILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK--MNVSPDVNYEELSRSTDDFNGAQCKAV 391 (431)
Q Consensus 316 ~~v~vI~ttn~~--~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~--~~~~~~~~~~~la~~~~g~s~~di~~l 391 (431)
.. +|+++|.. ..+ +.+. |+...+.|++|+.+++.+++...+.. +.++++ .+..|+..+.| +.+.+.++
T Consensus 180 ~~--iIli~~~~~~~~l-~~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G-diR~~i~~ 251 (516)
T 1sxj_A 180 TP--LILICNERNLPKM-RPFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG-DIRQVINL 251 (516)
T ss_dssp SC--EEEEESCTTSSTT-GGGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT-CHHHHHHH
T ss_pred CC--EEEEEcCCCCccc-hhhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-cHHHHHHH
Confidence 23 44455543 333 3344 44568999999999999999877654 344433 37788877653 23333343
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q psy15151 392 CVEAGMIALRRGAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 392 ~~~A~~~A~~~~~~~It~ed~~~Al~~~ 419 (431)
++. .+. +...|+.+++..++...
T Consensus 252 L~~---~~~--~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 252 LST---IST--TTKTINHENINEISKAW 274 (516)
T ss_dssp HTH---HHH--HSSCCCTTHHHHHHHHH
T ss_pred HHH---HHh--cCCCCchHHHHHHHHhh
Confidence 333 332 34568888887777644
No 67
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.73 E-value=3.4e-17 Score=158.74 Aligned_cols=205 Identities=21% Similarity=0.221 Sum_probs=138.5
Q ss_pred CCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc-----CCceEEeehh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT-----KSTFLKLAGP 246 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~-----~~~~i~i~~~ 246 (431)
..+..|++++|++..++.+...+... ...++||+||||||||++|+++++.+ +.+++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTTT-------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhCC-------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 34578999999999999988766531 22349999999999999999999985 3457888876
Q ss_pred hhhHhhhcchHHHHHHHHHHH--HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEe
Q psy15151 247 QLVQMFIGDGAKLVRDAFALA--KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAAT 324 (431)
Q Consensus 247 ~l~~~~~g~~~~~~~~lf~~a--~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~tt 324 (431)
.... .......+....... ....+.||+|||+|.+ +.+.++.|..+++. ...++.+|++|
T Consensus 78 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le~-----~~~~~~~i~~~ 139 (319)
T 2chq_A 78 DERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADAL-----------TADAQAALRRTMEM-----YSKSCRFILSC 139 (319)
T ss_dssp STTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGS-----------CHHHHHTTGGGTSS-----SSSSEEEEEEE
T ss_pred cccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcC-----------CHHHHHHHHHHHHh-----cCCCCeEEEEe
Confidence 5321 111111122111010 1245789999999998 44445555444432 34678899999
Q ss_pred CCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Q psy15151 325 NRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG 403 (431)
Q Consensus 325 n~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~ 403 (431)
|.+..+.+++.+ |+. .+.|++|+.+++.+++...+...++. ++..+..++..+. .+.+.+.++++.+...
T Consensus 140 ~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~-G~~r~~~~~l~~~~~~----- 210 (319)
T 2chq_A 140 NYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISG-GDFRKAINALQGAAAI----- 210 (319)
T ss_dssp SCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTT-TCHHHHHHHHHHHHHS-----
T ss_pred CChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHc-----
Confidence 999999999999 885 89999999999999999988765543 1222455665544 3455555666554421
Q ss_pred CCCcCHHHHHHHH
Q psy15151 404 AAIVTHEDFMDAI 416 (431)
Q Consensus 404 ~~~It~ed~~~Al 416 (431)
...|+.+++..++
T Consensus 211 ~~~i~~~~v~~~~ 223 (319)
T 2chq_A 211 GEVVDADTIYQIT 223 (319)
T ss_dssp SSCBCHHHHHHHT
T ss_pred CCCCCHHHHHHHH
Confidence 3457777765543
No 68
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.72 E-value=1.4e-17 Score=161.69 Aligned_cols=206 Identities=21% Similarity=0.270 Sum_probs=138.6
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHh---
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQM--- 251 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~--- 251 (431)
++++|.+..++.+.+.+..... .+.++||+||||||||++|++++... +.+|+.++|+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 3689999999999888775432 45789999999999999999999965 578999999865432
Q ss_pred --hhcchH----H---HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcC------CCCCC
Q psy15151 252 --FIGDGA----K---LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG------FSSTA 316 (431)
Q Consensus 252 --~~g~~~----~---~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~------~~~~~ 316 (431)
++|... + .....|+.+.. ++||||||+.+ +...+..|+++++...- .....
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~~---g~L~LDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEADG---GTLFLDEIGDI-----------SPLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHTT---SEEEEESCTTC-----------CHHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HHhcCccccccCchhhhhcCHHHhcCC---CEEEEeccccC-----------CHHHHHHHHHHHhcCEeeecCCcccccC
Confidence 233211 0 11234555543 59999999998 67788889888886421 11235
Q ss_pred CeEEEEEeCCC-------CCCChhhhcCCCcc-eEEEcCCCC--HHHHHHHHHHHHhc----CCCC-CCCC---HHHHHH
Q psy15151 317 DIKVIAATNRV-------DILDPALLRSGRLD-RKIEFPHPN--EEARARIMQIHSRK----MNVS-PDVN---YEELSR 378 (431)
Q Consensus 317 ~v~vI~ttn~~-------~~l~~~l~r~gR~~-~~i~~~~p~--~~~r~~Il~~~l~~----~~~~-~~~~---~~~la~ 378 (431)
++.||+|||.. ..+++.+.. ||. ..|.+|++. .++...++..++.. .+.. ..++ +..+..
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 68899999975 346677777 774 457777776 35566666655443 2211 1233 444555
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHH
Q psy15151 379 STDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413 (431)
Q Consensus 379 ~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~ 413 (431)
.....+.+++.+++..|+..+ ....|+.+|+.
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 554557789999999888765 33456555553
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=2.8e-16 Score=152.58 Aligned_cols=200 Identities=16% Similarity=0.183 Sum_probs=144.9
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc-----CCceEEeehhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT-----KSTFLKLAGPQL 248 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~-----~~~~i~i~~~~l 248 (431)
+..|++++|++..++.+...+... ...+++|+||||+|||++|+++++.+ +.+++.+++++.
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDG-------------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSC-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 567899999999999998887531 22349999999999999999999985 345777777542
Q ss_pred hHhhhcchHHHHHHHHHHHH-------hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15151 249 VQMFIGDGAKLVRDAFALAK-------EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321 (431)
Q Consensus 249 ~~~~~g~~~~~~~~lf~~a~-------~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI 321 (431)
. +...++.++.... .+.+.||+|||+|.+ ....++.|..+++. ...++.+|
T Consensus 84 ~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~-----~~~~~~~i 141 (323)
T 1sxj_B 84 R------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSM-----------TAGAQQALRRTMEL-----YSNSTRFA 141 (323)
T ss_dssp C------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGS-----------CHHHHHTTHHHHHH-----TTTTEEEE
T ss_pred c------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccC-----------CHHHHHHHHHHHhc-----cCCCceEE
Confidence 1 2334455555444 334789999999998 55566777777776 24567889
Q ss_pred EEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy15151 322 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIAL 400 (431)
Q Consensus 322 ~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~ 400 (431)
++||.+..+.+.+.+ |+. .+.|++|+.+++.+++...+...++. ++..+..++..+.| +.+.+.+++..+...
T Consensus 142 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~-- 215 (323)
T 1sxj_B 142 FACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG-- 215 (323)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH--
T ss_pred EEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc--
Confidence 999999999999998 875 89999999999999999887654433 12235667777754 445555656554422
Q ss_pred HhCCCCcCHHHHHHHHH
Q psy15151 401 RRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 401 ~~~~~~It~ed~~~Al~ 417 (431)
. ..|+.+++.+++.
T Consensus 216 -~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 216 -H--GLVNADNVFKIVD 229 (323)
T ss_dssp -H--SSBCHHHHHHHHT
T ss_pred -C--CCcCHHHHHHHHC
Confidence 1 3588888877664
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.71 E-value=3.9e-17 Score=145.25 Aligned_cols=152 Identities=22% Similarity=0.369 Sum_probs=114.1
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i 243 (431)
...|++++|.+..++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 45788999999999999887653 145789999999999999999999986 7788888
Q ss_pred ehhhhhHh--hhcchHHHHHHHHHHHHhC-CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15151 244 AGPQLVQM--FIGDGAKLVRDAFALAKEK-APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKV 320 (431)
Q Consensus 244 ~~~~l~~~--~~g~~~~~~~~lf~~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~v 320 (431)
++..+... +.|.....+..++..+... .+.+|||||+|.+...+.... ...++.+.+..+++. .++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~--~~~~~~~~l~~~~~~-------~~~~i 155 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE--GALDAGNILKPMLAR-------GELRC 155 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT--TSCCTHHHHHHHHHT-------TCSCE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc--cchHHHHHHHHHHhc-------CCeeE
Confidence 88877532 3455555667777766554 678999999999975543111 123344555555542 56789
Q ss_pred EEEeCCCC-----CCChhhhcCCCcceEEEcCCCC
Q psy15151 321 IAATNRVD-----ILDPALLRSGRLDRKIEFPHPN 350 (431)
Q Consensus 321 I~ttn~~~-----~l~~~l~r~gR~~~~i~~~~p~ 350 (431)
|+++|.+. .+++++.+ ||.. +.+++|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 99999765 68999999 9984 9999885
No 71
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=4.1e-16 Score=151.60 Aligned_cols=186 Identities=19% Similarity=0.294 Sum_probs=134.5
Q ss_pred CCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC-----CceEEeehh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK-----STFLKLAGP 246 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~-----~~~i~i~~~ 246 (431)
..+..|++++|+++.++.+...+... ...++||+||||||||++|+++++.+. ..++.++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 34678999999999999998877531 223599999999999999999999853 246777776
Q ss_pred hhhHhhhcchHHHHHHHHH-HHH-----hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15151 247 QLVQMFIGDGAKLVRDAFA-LAK-----EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKV 320 (431)
Q Consensus 247 ~l~~~~~g~~~~~~~~lf~-~a~-----~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~v 320 (431)
+.... ..++..+. .+. ...+.||+|||+|.+ +.+.++.|..+++. ...++.+
T Consensus 86 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~L~~~le~-----~~~~~~~ 143 (327)
T 1iqp_A 86 DERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADAL-----------TQDAQQALRRTMEM-----FSSNVRF 143 (327)
T ss_dssp CHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-----------CHHHHHHHHHHHHH-----TTTTEEE
T ss_pred ccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-----------CHHHHHHHHHHHHh-----cCCCCeE
Confidence 43211 11111111 111 145789999999998 56677888888876 2456788
Q ss_pred EEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHH
Q psy15151 321 IAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAG 396 (431)
Q Consensus 321 I~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~ 396 (431)
|+++|.+..+.+++.+ |+. .+.|++|+.++...++...+...++. ++..+..++..+.| +.+.+.++++.+.
T Consensus 144 i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 144 ILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 9999999999999998 886 89999999999999999888765543 12235667776654 5566666666554
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.71 E-value=8.8e-17 Score=174.69 Aligned_cols=189 Identities=23% Similarity=0.314 Sum_probs=134.8
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i 243 (431)
...++.++|+++.++.+...+... ...++||+||||||||++|+++|..+ +.+++.+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~~-------------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSRR-------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCS-------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hCCCCCccCchHHHHHHHHHHhCC-------------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 457889999999999998877641 44689999999999999999999986 7788888
Q ss_pred ehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q psy15151 244 AGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAA 323 (431)
Q Consensus 244 ~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~t 323 (431)
++ ..++.|+.+..++.+|..+....++||||| . ..+.++.|...+ ..+.+.+|++
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~-------------~~~~~~~L~~~l-------~~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------------AIDASNILKPSL-------ARGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C---------------------CCCT-------TSSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C-------------chhHHHHHHHHH-------hcCCEEEEeC
Confidence 87 556778888889999999998889999999 1 122333343333 2567899999
Q ss_pred eCCCC-----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCC-----HHHHHHH-----cCCCCHHHH
Q psy15151 324 TNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVN-----YEELSRS-----TDDFNGAQC 388 (431)
Q Consensus 324 tn~~~-----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~-----~~~la~~-----~~g~s~~di 388 (431)
||... .+++++.| || ..|.|+.|+.+++.+|++.+...+.....+. +..++.. ..++.++..
T Consensus 298 t~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~a 374 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (758)
T ss_dssp CCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHH
Confidence 99988 69999999 99 5699999999999999998776543222222 3334433 245566777
Q ss_pred HHHHHHHHHHHHHhC
Q psy15151 389 KAVCVEAGMIALRRG 403 (431)
Q Consensus 389 ~~l~~~A~~~A~~~~ 403 (431)
..++..|+..+..+.
T Consensus 375 i~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 375 IDLIDEAGSKVRLRS 389 (758)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhc
Confidence 888888877665543
No 73
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.70 E-value=2.5e-16 Score=156.26 Aligned_cols=201 Identities=16% Similarity=0.218 Sum_probs=144.7
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce-------------
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF------------- 240 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~------------- 240 (431)
...|++++|++..++.+...+... ..+..+||+||+|||||++|+++++.++...
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 567899999999999998877531 1345689999999999999999999875421
Q ss_pred -----------EEeehhhhhHhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHH
Q psy15151 241 -----------LKLAGPQLVQMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 305 (431)
Q Consensus 241 -----------i~i~~~~l~~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 305 (431)
+.++... ......++.+++.+.. +.+.||+|||+|.+ +...++.|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-----------~~~~~~~Ll~~ 142 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALLKT 142 (373)
T ss_dssp HHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-----------CHHHHHHHHHH
T ss_pred HHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchh-----------cHHHHHHHHHH
Confidence 1221110 0112234556655543 34689999999998 55666777777
Q ss_pred HHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHcCCCC
Q psy15151 306 LNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSP-DVNYEELSRSTDDFN 384 (431)
Q Consensus 306 L~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~~~~~la~~~~g~s 384 (431)
++. ...++++|++||.+..+.+.+.+ |+ ..+.|++|+.++..+++..+++..++.- +..+..++..+.| +
T Consensus 143 le~-----~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~ 213 (373)
T 1jr3_A 143 LEE-----PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S 213 (373)
T ss_dssp HHS-----CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-C
T ss_pred Hhc-----CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-C
Confidence 754 34678899999999899999998 77 7899999999999999998887554431 2225667777755 6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 385 GAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 385 ~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
.+.+.+++..+...+ ...|+.+++..++
T Consensus 214 ~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 214 LRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 788888888775432 3568888876653
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.70 E-value=1.1e-16 Score=176.07 Aligned_cols=203 Identities=20% Similarity=0.271 Sum_probs=136.8
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----------CCceEEe
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----------KSTFLKL 243 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----------~~~~i~i 243 (431)
...+++++|.++.+..+...+.. ..+.+++|+||||||||++|+++|... +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 56789999999999999887653 144689999999999999999999986 7889999
Q ss_pred ehhhhh--HhhhcchHHHHHHHHHHHHhC-CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEE
Q psy15151 244 AGPQLV--QMFIGDGAKLVRDAFALAKEK-APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKV 320 (431)
Q Consensus 244 ~~~~l~--~~~~g~~~~~~~~lf~~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~v 320 (431)
+++.+. ..+.|+....++.+|..+... .|+||||||+|.+.+.+.. .+..+..+.+..++.. +.+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~~~~~L~~~l~~-------~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPALAR-------GELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHT-------TCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHHHHHHHHHHHhC-------CCeEE
Confidence 998886 567788888899999988875 6899999999999765422 1223445566666643 56779
Q ss_pred EEEeCCCC----CCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCC----CC-CCCCHHHHHHH-----cCCCCHH
Q psy15151 321 IAATNRVD----ILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMN----VS-PDVNYEELSRS-----TDDFNGA 386 (431)
Q Consensus 321 I~ttn~~~----~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~----~~-~~~~~~~la~~-----~~g~s~~ 386 (431)
|++||.++ .+++++.+ ||+. +.|++|+.+++.+|++.++..+. +. .+..+..++.. +..+.+.
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChH
Confidence 99998764 47899999 9985 99999999999999987765331 11 11123444443 3456677
Q ss_pred HHHHHHHHHHHHHHHh
Q psy15151 387 QCKAVCVEAGMIALRR 402 (431)
Q Consensus 387 di~~l~~~A~~~A~~~ 402 (431)
....++.+|+..+..+
T Consensus 380 kai~lldea~a~~~~~ 395 (854)
T 1qvr_A 380 KAIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888887766544
No 75
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.70 E-value=2.2e-17 Score=174.17 Aligned_cols=226 Identities=22% Similarity=0.163 Sum_probs=148.3
Q ss_pred cccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEee----hhhhhHhh
Q psy15151 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLA----GPQLVQMF 252 (431)
Q Consensus 177 ~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~----~~~l~~~~ 252 (431)
...|+|++..++.+..++..... ..+....+....++||+||||||||++|+++|+.++..++... +..+....
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~--~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~ 371 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVP--KVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAV 371 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCC--EETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEEC
T ss_pred cchhcChHHHHHHHHHHHhCCCc--ccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCcccccccccee
Confidence 35688998877776443332110 0000011223348999999999999999999998876654432 22221111
Q ss_pred -----hcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc------CC--CCCCCeE
Q psy15151 253 -----IGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD------GF--SSTADIK 319 (431)
Q Consensus 253 -----~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~------~~--~~~~~v~ 319 (431)
.|... .....+..+. .+|+||||||.+ +++.+..|+++|+... +. ..+.++.
T Consensus 372 ~~~~~~g~~~-~~~G~l~~A~---~gil~IDEid~l-----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 372 VREKGTGEYY-LEAGALVLAD---GGIAVIDEIDKM-----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp SSGGGTSSCS-EEECHHHHHS---SSEECCTTTTCC-----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred eecccccccc-ccCCeeEecC---CCcEEeehhhhC-----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 11100 0011233332 359999999998 6678889999988632 11 1235788
Q ss_pred EEEEeCCCC-------------CCChhhhcCCCcce-EEEcCCCCHHHHHHHHHHHHhcCCC------------------
Q psy15151 320 VIAATNRVD-------------ILDPALLRSGRLDR-KIEFPHPNEEARARIMQIHSRKMNV------------------ 367 (431)
Q Consensus 320 vI~ttn~~~-------------~l~~~l~r~gR~~~-~i~~~~p~~~~r~~Il~~~l~~~~~------------------ 367 (431)
||+|||+.. .+++++++ |||. .+..+.|+.+ ...|.++.+.....
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ 513 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAY 513 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHH
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHH
Confidence 999999886 89999999 9985 4555566666 77777766643221
Q ss_pred --------CCCCCHHHHHHH--------------cCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q psy15151 368 --------SPDVNYEELSRS--------------TDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 368 --------~~~~~~~~la~~--------------~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~ 422 (431)
-++...+.|... ..+.+.+.+.++++.|...|..+++..|+.+|+.+|+..+...
T Consensus 514 ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 514 ARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp HHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 011223344443 3467889999999999999999999999999999999988764
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=2.5e-15 Score=147.93 Aligned_cols=206 Identities=20% Similarity=0.252 Sum_probs=137.7
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC-----ceEEeehhh
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS-----TFLKLAGPQ 247 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~-----~~i~i~~~~ 247 (431)
....|++++|++.+++.+...+.. | .. .+++|+||||||||++|+++|+.+.. .++.++++.
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE-----------G-KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT-----------T-CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-----------C-CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 467899999999999998887763 1 12 24999999999999999999998533 355566543
Q ss_pred hhHhhhcchHHHHHHHHHHHHh------CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15151 248 LVQMFIGDGAKLVRDAFALAKE------KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321 (431)
Q Consensus 248 l~~~~~g~~~~~~~~lf~~a~~------~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI 321 (431)
. .+...++..+..... ..+.|++|||+|.+ ....++.|+.+++.. ...+.+|
T Consensus 87 ~------~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-----------~~~~~~~L~~~le~~-----~~~~~~i 144 (340)
T 1sxj_C 87 D------RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-----------TNAAQNALRRVIERY-----TKNTRFC 144 (340)
T ss_dssp C------CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-----------CHHHHHHHHHHHHHT-----TTTEEEE
T ss_pred c------ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhcC-----CCCeEEE
Confidence 2 112233333332221 23689999999998 556677888888763 3567788
Q ss_pred EEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy15151 322 AATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIAL 400 (431)
Q Consensus 322 ~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~ 400 (431)
+++|.+..+.+++.+ |+. .+.|++++.++..+++...++...+. ++.....++..+.| ..+.+.++++.+...+.
T Consensus 145 l~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~~ 220 (340)
T 1sxj_C 145 VLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATLD 220 (340)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTTC
T ss_pred EEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcC
Confidence 899999999999999 885 78999999999999998888543332 12224556665543 33444444444332221
Q ss_pred HhCCCCcCHHHHHHHHH
Q psy15151 401 RRGAAIVTHEDFMDAIM 417 (431)
Q Consensus 401 ~~~~~~It~ed~~~Al~ 417 (431)
..+...|+.+++..++.
T Consensus 221 ~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 221 NPDEDEISDDVIYECCG 237 (340)
T ss_dssp SSSCCCBCHHHHHHHTT
T ss_pred CcccccccHHHHHHHhC
Confidence 11223588877765443
No 77
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.65 E-value=1.5e-16 Score=137.12 Aligned_cols=132 Identities=16% Similarity=0.239 Sum_probs=98.0
Q ss_pred cccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHH
Q psy15151 179 DIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAK 258 (431)
Q Consensus 179 ~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~ 258 (431)
+++|.+..++.+.+.+..... .+.++||+||||||||++|++++.... +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 578999999999988875432 447899999999999999999999887 99999998876543
Q ss_pred HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC-CC----CChh
Q psy15151 259 LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV-DI----LDPA 333 (431)
Q Consensus 259 ~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~-~~----l~~~ 333 (431)
...+|+.+. .++|||||+|.+ +.+.+..++++++... ..++.+|+|||.+ .. +++.
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~~~~~~~~~~~~ 127 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQY-----------SRNIQTGITFIIGKAE----RCRVRVIASCSYAAGSDGISCEEK 127 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTC-----------CHHHHHHHHHHHHHHT----TTTCEEEEEEEECTTTC--CHHHH
T ss_pred -hhhHHHhCC---CCeEEEeChHHC-----------CHHHHHHHHHHHHhCC----CCCEEEEEecCCCHHHHHhCccHH
Confidence 345566554 459999999998 6778888888888753 4567899999854 32 3344
Q ss_pred hhcCCCc-ceEEEcCCC
Q psy15151 334 LLRSGRL-DRKIEFPHP 349 (431)
Q Consensus 334 l~r~gR~-~~~i~~~~p 349 (431)
+.. |+ ...|.+|++
T Consensus 128 L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 128 LAG--LFSESVVRIPPL 142 (143)
T ss_dssp HHH--HSSSEEEEECCC
T ss_pred HHH--HhcCcEEeCCCC
Confidence 444 54 346777765
No 78
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.65 E-value=2.8e-16 Score=135.61 Aligned_cols=132 Identities=19% Similarity=0.232 Sum_probs=96.8
Q ss_pred cccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhhhcc
Q psy15151 179 DIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMFIGD 255 (431)
Q Consensus 179 ~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~~g~ 255 (431)
+++|.+..++.+.+.+..... .+.++||+||||||||++|++++... +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 688999999999988765432 45789999999999999999999976 67899 999876543
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC-------C
Q psy15151 256 GAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV-------D 328 (431)
Q Consensus 256 ~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~-------~ 328 (431)
......|+.+.. ++|||||||.+ +.+.+..|++++.. ...++.+|+|||.+ .
T Consensus 66 --~~~~~~~~~a~~---g~l~ldei~~l-----------~~~~q~~Ll~~l~~-----~~~~~~~I~~t~~~~~~~~~~~ 124 (145)
T 3n70_A 66 --PQLNDFIALAQG---GTLVLSHPEHL-----------TREQQYHLVQLQSQ-----EHRPFRLIGIGDTSLVELAASN 124 (145)
T ss_dssp --SCHHHHHHHHTT---SCEEEECGGGS-----------CHHHHHHHHHHHHS-----SSCSSCEEEEESSCHHHHHHHS
T ss_pred --hhhhcHHHHcCC---cEEEEcChHHC-----------CHHHHHHHHHHHhh-----cCCCEEEEEECCcCHHHHHHcC
Confidence 223445666644 49999999998 77788888888833 34567799999964 2
Q ss_pred CCChhhhcCCCcc-eEEEcCCC
Q psy15151 329 ILDPALLRSGRLD-RKIEFPHP 349 (431)
Q Consensus 329 ~l~~~l~r~gR~~-~~i~~~~p 349 (431)
.+.+.+.. |+. ..|.+|++
T Consensus 125 ~~~~~L~~--rl~~~~i~lPpL 144 (145)
T 3n70_A 125 HIIAELYY--CFAMTQIACLPL 144 (145)
T ss_dssp CCCHHHHH--HHHHHEEECCCC
T ss_pred CCCHHHHH--HhcCCEEeCCCC
Confidence 35555555 543 25777764
No 79
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1e-14 Score=143.91 Aligned_cols=192 Identities=13% Similarity=0.224 Sum_probs=133.5
Q ss_pred ccCCCCCcccccCchHHHHHHHHHh-hccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCC----------
Q psy15151 170 DERPTEQYSDIGGLDKQIQELIEAV-VLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS---------- 238 (431)
Q Consensus 170 ~~~~~~~~~~i~G~~~~i~~l~~~i-~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~---------- 238 (431)
.+..+.+|++++|++..++.+...+ .. + ..+. ++|+||+|+|||++++++++.+..
T Consensus 6 ~kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~ 72 (354)
T 1sxj_E 6 DKYRPKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV 72 (354)
T ss_dssp TTTCCCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred hccCCCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecc
Confidence 3345678999999999999887766 21 1 1233 999999999999999999996321
Q ss_pred -------------------ceEEeehhhhhHhhhcc-hHHHHHHHHHHHH--------------hCCCeEEEEccccccc
Q psy15151 239 -------------------TFLKLAGPQLVQMFIGD-GAKLVRDAFALAK--------------EKAPAIIFIDELDAIG 284 (431)
Q Consensus 239 -------------------~~i~i~~~~l~~~~~g~-~~~~~~~lf~~a~--------------~~~p~vl~iDEid~l~ 284 (431)
.++.++.+.. +. ....++..+..+. ...|.||+|||++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L- 146 (354)
T 1sxj_E 73 RQFVTASNRKLELNVVSSPYHLEITPSDM-----GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL- 146 (354)
T ss_dssp -------------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-
T ss_pred eeecccccccceeeeecccceEEecHhhc-----CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-
Confidence 1222222111 11 1112344443332 235779999999997
Q ss_pred cCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhc
Q psy15151 285 TKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRK 364 (431)
Q Consensus 285 ~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~ 364 (431)
+...++.+..+++.. ..++.+|++||.+..+.+.+.+ |+ ..+.|++|+.+++.++++..+..
T Consensus 147 ----------~~~~~~~L~~~le~~-----~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 147 ----------TKDAQAALRRTMEKY-----SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp ----------CHHHHHHHHHHHHHS-----TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHhh-----cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHH
Confidence 667778888888763 3467899999999999999999 88 78999999999999999988765
Q ss_pred CCCC-C-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 365 MNVS-P-DVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 365 ~~~~-~-~~~~~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
.++. + +..+..++..+.| +.+++.++++.+...+
T Consensus 209 ~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 209 ERIQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp HTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred cCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 4443 2 3336777777754 5577777777665443
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.60 E-value=2.5e-15 Score=159.14 Aligned_cols=216 Identities=23% Similarity=0.356 Sum_probs=144.4
Q ss_pred CCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce---EEeehhhh
Q psy15151 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF---LKLAGPQL 248 (431)
Q Consensus 172 ~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~---i~i~~~~l 248 (431)
.+...|++++|++..++.+...+. .+.+++|+||||||||++|+++|..+.... +.+.+...
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred ccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 446789999999999988887765 446899999999999999999999764321 11111000
Q ss_pred -------------------------------------------------------------------hHhhhcchH----
Q psy15151 249 -------------------------------------------------------------------VQMFIGDGA---- 257 (431)
Q Consensus 249 -------------------------------------------------------------------~~~~~g~~~---- 257 (431)
...++|...
T Consensus 100 ~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~ 179 (604)
T 3k1j_A 100 DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPF 179 (604)
T ss_dssp CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC
T ss_pred cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechh
Confidence 000111000
Q ss_pred --H---------HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc----C-----------
Q psy15151 258 --K---------LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD----G----------- 311 (431)
Q Consensus 258 --~---------~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~----~----------- 311 (431)
+ .....+.. ..+++|||||++.+ ++..+..|+++|+... +
T Consensus 180 ~~g~~~~g~~~~i~~g~~~~---a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~ 245 (604)
T 3k1j_A 180 QSGGLGTPAHERVEPGMIHR---AHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVR 245 (604)
T ss_dssp ----CCCCGGGGEECCHHHH---TTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCB
T ss_pred hcCCccccccccccCceeee---cCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCC
Confidence 0 00011122 24569999999998 7889999999998632 1
Q ss_pred -CCCCCCeEEEEEeCCC--CCCChhhhcCCCcc---eEEEcCCC---CHHHHHHHHHHHHhcCC---CCCCCC---HHHH
Q psy15151 312 -FSSTADIKVIAATNRV--DILDPALLRSGRLD---RKIEFPHP---NEEARARIMQIHSRKMN---VSPDVN---YEEL 376 (431)
Q Consensus 312 -~~~~~~v~vI~ttn~~--~~l~~~l~r~gR~~---~~i~~~~p---~~~~r~~Il~~~l~~~~---~~~~~~---~~~l 376 (431)
...+.++.||+|||+. ..++++|++ ||. ..+.|+.. .......+++...+... ....++ +..|
T Consensus 246 ~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~L 323 (604)
T 3k1j_A 246 TEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEI 323 (604)
T ss_dssp CSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHH
T ss_pred CCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHH
Confidence 1113478899999976 679999999 986 56776543 34556666654433211 111222 4444
Q ss_pred HHHc---CCC------CHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q psy15151 377 SRST---DDF------NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIME 418 (431)
Q Consensus 377 a~~~---~g~------s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~ 418 (431)
.... .|- +.+++.++++.|...|..+++..|+.+|+.+|+..
T Consensus 324 i~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 324 VREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4432 442 68999999999999999999999999999999964
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=8.2e-14 Score=139.82 Aligned_cols=232 Identities=13% Similarity=0.122 Sum_probs=150.2
Q ss_pred CCCcccccCchHHHHHHHHHh-hccccChHHHHhcCCCCCCCcee--eCCCCCchHHHHHHHHHHc---------CCceE
Q psy15151 174 TEQYSDIGGLDKQIQELIEAV-VLPMTHKEKFVNLGIQPPKGVLL--YGPPGTGKTLLARACAAQT---------KSTFL 241 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i-~~~~~~~~~~~~~g~~~~~~vLl--~GppGtGKT~lakala~~~---------~~~~i 241 (431)
......++|.+..++.+...+ ......+ + ..+..++| +||||+|||++++.+++.. +..++
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~------~-~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGA------G-LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSS------C-BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCC------C-CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 334578999999999998887 5322210 0 13467899 9999999999999999865 45677
Q ss_pred Eeehhh------hhHhh---hc-------ch-HHHHHHHHHHHH-hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHH
Q psy15151 242 KLAGPQ------LVQMF---IG-------DG-AKLVRDAFALAK-EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTML 303 (431)
Q Consensus 242 ~i~~~~------l~~~~---~g-------~~-~~~~~~lf~~a~-~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~ 303 (431)
+++|.. +...+ +| .. ......+..... ...|.||+|||+|.+...+ ..+.+....+.
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~-----~~~~~~l~~l~ 165 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP-----RIAAEDLYTLL 165 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCT-----TSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhcc-----CcchHHHHHHH
Confidence 888643 11111 11 11 122233333332 3558899999999984321 01234444455
Q ss_pred HHHHhhcCCCCCCCeEEEEEeCCCC---CCC---hhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCC---CHH
Q psy15151 304 ELLNQLDGFSSTADIKVIAATNRVD---ILD---PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDV---NYE 374 (431)
Q Consensus 304 ~lL~~~~~~~~~~~v~vI~ttn~~~---~l~---~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~---~~~ 374 (431)
.++.....-....++.+|++||.++ .++ +.+.+ ++...+.+++++.++..+++..++......... .+.
T Consensus 166 ~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~ 243 (412)
T 1w5s_A 166 RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLE 243 (412)
T ss_dssp THHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHH
T ss_pred HHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 5554431000026788888887654 233 55666 666669999999999999998776532211112 245
Q ss_pred HHHHHcC------CCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q psy15151 375 ELSRSTD------DFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQ 420 (431)
Q Consensus 375 ~la~~~~------g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~ 420 (431)
.++..+. | +++.+..+|..|...|..++...++.+++..++....
T Consensus 244 ~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 244 LISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 6667776 4 5678889999998888888888899999998887653
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.47 E-value=9.7e-13 Score=129.15 Aligned_cols=171 Identities=16% Similarity=0.160 Sum_probs=115.3
Q ss_pred chHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce----------------------
Q psy15151 183 LDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF---------------------- 240 (431)
Q Consensus 183 ~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~---------------------- 240 (431)
+++.++.+...+... ..++.+||+||||+|||++|+++|+.+.+..
T Consensus 7 ~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 455566666655421 2446799999999999999999999865432
Q ss_pred --EEeehhhhhHhhhcchHHHHHHHHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCC
Q psy15151 241 --LKLAGPQLVQMFIGDGAKLVRDAFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS 314 (431)
Q Consensus 241 --i~i~~~~l~~~~~g~~~~~~~~lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~ 314 (431)
+.++... .....+...++.+++.+.. +.+.|++|||+|.+ +.+.++.|+..+++ .
T Consensus 75 d~~~~~~~~---~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l-----------~~~a~naLLk~lEe-----p 135 (334)
T 1a5t_A 75 DYYTLAPEK---GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL-----------TDAAANALLKTLEE-----P 135 (334)
T ss_dssp TEEEECCCT---TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB-----------CHHHHHHHHHHHTS-----C
T ss_pred CEEEEeccc---cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhc-----------CHHHHHHHHHHhcC-----C
Confidence 2222110 0001234456777776654 34689999999998 55666767666643 4
Q ss_pred CCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHH
Q psy15151 315 TADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVC 392 (431)
Q Consensus 315 ~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~ 392 (431)
..++++|++||.++.+.|.+++ |+ ..+.|++|+.++..+++.... .++ +..+..++..+.|. .+.+.+++
T Consensus 136 ~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~~-~~~~~~l~~~s~G~-~r~a~~~l 205 (334)
T 1a5t_A 136 PAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TMS-QDALLAALRLSAGS-PGAALALF 205 (334)
T ss_dssp CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CCC-HHHHHHHHHHTTTC-HHHHHHTT
T ss_pred CCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCC-HHHHHHHh
Confidence 5678899999999999999999 87 479999999999999998765 222 22245566666543 34444333
No 83
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.45 E-value=3.7e-13 Score=134.83 Aligned_cols=210 Identities=20% Similarity=0.236 Sum_probs=142.4
Q ss_pred cccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcC---CceEEeehhhhhHh--
Q psy15151 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTK---STFLKLAGPQLVQM-- 251 (431)
Q Consensus 177 ~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~---~~~i~i~~~~l~~~-- 251 (431)
+..++|.+..++.+.+.+.... ....+++|+|++|||||++|++++.... .+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 5678999998888888776522 1446799999999999999999998754 68999999876432
Q ss_pred ---hhcchHH-------HHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhc-----CC-CCC
Q psy15151 252 ---FIGDGAK-------LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD-----GF-SST 315 (431)
Q Consensus 252 ---~~g~~~~-------~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~-----~~-~~~ 315 (431)
++|...+ .....|+.|..+ +||||||+.+ +.+.|..|+++|+... +. ...
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADGG---TLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTTS---EEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCCc---EEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 3343211 122456666554 9999999999 8899999999999732 11 112
Q ss_pred CCeEEEEEeCCC-------CCCChhhhcCCCcc-eEEEcCCCCH--HHHHHHHHHHHhc----CCCC-CCCC---HHHHH
Q psy15151 316 ADIKVIAATNRV-------DILDPALLRSGRLD-RKIEFPHPNE--EARARIMQIHSRK----MNVS-PDVN---YEELS 377 (431)
Q Consensus 316 ~~v~vI~ttn~~-------~~l~~~l~r~gR~~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~-~~~~---~~~la 377 (431)
.++.||+|||.. ..+.+.+.. |+. ..|.+|++.. ++...++..+++. ++.. ..++ +..+.
T Consensus 271 ~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 271 VNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp CCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred ccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 478899999963 345555554 443 4567776643 5555566555433 3322 1123 34445
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q psy15151 378 RSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAI 416 (431)
Q Consensus 378 ~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al 416 (431)
......+.+++++++.+|+..+ ....|+.+|+...+
T Consensus 349 ~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 349 SYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred hCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 5444456689999999988766 45679999987544
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=5.7e-13 Score=129.04 Aligned_cols=142 Identities=11% Similarity=0.129 Sum_probs=108.3
Q ss_pred CchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc------CCceEEeehhhhhHhhhcc
Q psy15151 182 GLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT------KSTFLKLAGPQLVQMFIGD 255 (431)
Q Consensus 182 G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~------~~~~i~i~~~~l~~~~~g~ 255 (431)
|++++++.+...+... ...++|||||||+|||++|+++|+.+ ...++.++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~~-------------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC-------------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHCC-------------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 6777788887777642 13479999999999999999999863 345666665410 12
Q ss_pred hHHHHHHHHHHHHhCC----CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCC
Q psy15151 256 GAKLVRDAFALAKEKA----PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331 (431)
Q Consensus 256 ~~~~~~~lf~~a~~~~----p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~ 331 (431)
+...++.+++.+...+ ..|++|||+|.+ ..+.++.|+..|++ .+.++++|++||.+..+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l-----------t~~a~naLLk~LEe-----p~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM-----------TQQAANAFLKALEE-----PPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-----------CHHHHHHTHHHHHS-----CCTTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh-----------CHHHHHHHHHHHhC-----CCCCeEEEEEECChHhCh
Confidence 3455777888776543 479999999999 66677888888765 456788899999999999
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHH
Q psy15151 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHS 362 (431)
Q Consensus 332 ~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l 362 (431)
|++++ | .+.|++|+.++..+.+...+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 8 78999999999999998776
No 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.43 E-value=4.5e-13 Score=102.83 Aligned_cols=77 Identities=47% Similarity=0.695 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q psy15151 347 PHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKK 423 (431)
Q Consensus 347 ~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~ 423 (431)
|+|+.++|.+||+.+++++.+..++++..|+..|.||||+||.++|++|++.|++++...|+.+||..|++++..++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~~ 77 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 77 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Confidence 68999999999999999999888999999999999999999999999999999999999999999999999987653
No 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.41 E-value=4.4e-13 Score=104.77 Aligned_cols=78 Identities=46% Similarity=0.685 Sum_probs=74.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhh
Q psy15151 346 FPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKK 423 (431)
Q Consensus 346 ~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~ 423 (431)
-.+|+.++|.+||+.+++++.+..++|+..|+..|.||||+||.++|++|++.|+++....|+.+||..|++++++.+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~~ 85 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 85 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccCC
Confidence 468999999999999999999888999999999999999999999999999999999999999999999999998754
No 87
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.40 E-value=1.2e-13 Score=158.21 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=108.6
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccC----------hHHHHh------cC------------CCCCCCceeeCCCCCc
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTH----------KEKFVN------LG------------IQPPKGVLLYGPPGTG 224 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~----------~~~~~~------~g------------~~~~~~vLl~GppGtG 224 (431)
+.+.|.+|+|+++.++.+.+.+.+++.+ ++.|.. .| ++.++.+|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3578999999999999999999998844 667766 23 3334449999999999
Q ss_pred hHHHHHHHHHHc---CCceEEeehhhh----h--------Hhhhcc----hHHHHHHHHHHHHhCCCeEEEEcccccccc
Q psy15151 225 KTLLARACAAQT---KSTFLKLAGPQL----V--------QMFIGD----GAKLVRDAFALAKEKAPAIIFIDELDAIGT 285 (431)
Q Consensus 225 KT~lakala~~~---~~~~i~i~~~~l----~--------~~~~g~----~~~~~~~lf~~a~~~~p~vl~iDEid~l~~ 285 (431)
||+||++++.+. +.+.+.++..+. . ++++++ +++.++.+|..|+...|++||+|++++|++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999864 456555655543 3 566677 889999999999999999999999999998
Q ss_pred CCCC---CCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 286 KRFD---SEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 286 ~r~~---~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
.+.. .......-..+.+.++|.++++.....+|+|| +||+
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 8532 11111123345688999998876666788777 6665
No 88
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.37 E-value=1.2e-11 Score=124.46 Aligned_cols=217 Identities=20% Similarity=0.135 Sum_probs=133.9
Q ss_pred ccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHH-HHHcCCceEEee-hh---hhhHhhhc
Q psy15151 180 IGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARAC-AAQTKSTFLKLA-GP---QLVQMFIG 254 (431)
Q Consensus 180 i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakal-a~~~~~~~i~i~-~~---~l~~~~~g 254 (431)
|.|++..+..+.-.+...-.. +...-++||.|+||| ||++|+++ +..+....+... ++ .+.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 888888777765544321110 012238999999999 99999999 665544322211 11 11111000
Q ss_pred chH-HHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhh----cCCCCCCCeEEEEEeCCCC-
Q psy15151 255 DGA-KLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL----DGFSSTADIKVIAATNRVD- 328 (431)
Q Consensus 255 ~~~-~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~----~~~~~~~~v~vI~ttn~~~- 328 (431)
.+. ..-.+.+..|..+ |+|+|||+.+ ++..+..|++.|++. .+..-+.++.||+|+|+..
T Consensus 286 ~tG~~~~~G~l~LAdgG---vl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 286 DRGWALRAGAAVLADGG---ILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp SSSEEEEECHHHHTTTS---EEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred CCCcccCCCeeEEcCCC---eeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 000 0001233344444 9999999998 888999999999872 2322246788999999865
Q ss_pred ----------CCChhhhcCCCcceEEEc-CCCCHH-------------HHHHHHHHHHhcCCCCCCCC---HHHHHH---
Q psy15151 329 ----------ILDPALLRSGRLDRKIEF-PHPNEE-------------ARARIMQIHSRKMNVSPDVN---YEELSR--- 378 (431)
Q Consensus 329 ----------~l~~~l~r~gR~~~~i~~-~~p~~~-------------~r~~Il~~~l~~~~~~~~~~---~~~la~--- 378 (431)
.|++++++ |||..+.+ ..|+.+ ..++++. +.+...+...++ .+.|..
T Consensus 352 yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~y~ 428 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHWYE 428 (506)
T ss_dssp -CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHHHH
T ss_pred cCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHHHH
Confidence 68889999 99875543 344432 2222222 222011111111 111111
Q ss_pred --------------HcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q psy15151 379 --------------STDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 379 --------------~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~ 422 (431)
...|.|++.+.++++-|...|..+++..|+.+|+..|+.-+...
T Consensus 429 ~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~S 486 (506)
T 3f8t_A 429 TRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWY 486 (506)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHH
T ss_pred HHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHH
Confidence 23477999999999999999999999999999999999998765
No 89
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.34 E-value=1.7e-12 Score=100.86 Aligned_cols=83 Identities=29% Similarity=0.497 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhhhcccC
Q psy15151 349 PNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKANLN 428 (431)
Q Consensus 349 p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~~~~~~~ 428 (431)
.+.++|.+||+.+++++++.+++|+..|+..|.||||+||.++|++|++.|++++...|+++||..|++++++.....+.
T Consensus 1 ~d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~~~l~ 80 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEHE 80 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCchHHHH
Confidence 36789999999999999988899999999999999999999999999999999999999999999999999998777778
Q ss_pred CCC
Q psy15151 429 YYA 431 (431)
Q Consensus 429 ~~~ 431 (431)
+|.
T Consensus 81 ~y~ 83 (83)
T 3aji_B 81 FYK 83 (83)
T ss_dssp ---
T ss_pred hcC
Confidence 873
No 90
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.34 E-value=3.2e-12 Score=127.08 Aligned_cols=195 Identities=23% Similarity=0.287 Sum_probs=130.1
Q ss_pred ccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCc--eEEeehhhhhH-----
Q psy15151 178 SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST--FLKLAGPQLVQ----- 250 (431)
Q Consensus 178 ~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~--~i~i~~~~l~~----- 250 (431)
..++|.+.....+...+..... ....++++|++||||+.+|++++...+.. |+.++|+.+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred ccccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 5688999888888776654322 34679999999999999999999876543 99999986532
Q ss_pred hhhcchHHH-------HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCC--C----CCCC
Q psy15151 251 MFIGDGAKL-------VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF--S----STAD 317 (431)
Q Consensus 251 ~~~g~~~~~-------~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~--~----~~~~ 317 (431)
.++|...+. ....|+.+..+ +||||||+.+ +...|..|+++|+...-. . ...+
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELADQG---TLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHTTTS---EEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred HhcCccccccCCcccccCChHhhcCCC---eEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeee
Confidence 233332111 12356666544 9999999999 889999999999874211 1 1246
Q ss_pred eEEEEEeCCC-------CCCChhhhcCCCcce-EEEcCCCCH--HHHHHHHHHHHhc----CCCC-CCCC---HHHHHHH
Q psy15151 318 IKVIAATNRV-------DILDPALLRSGRLDR-KIEFPHPNE--EARARIMQIHSRK----MNVS-PDVN---YEELSRS 379 (431)
Q Consensus 318 v~vI~ttn~~-------~~l~~~l~r~gR~~~-~i~~~~p~~--~~r~~Il~~~l~~----~~~~-~~~~---~~~la~~ 379 (431)
+.+|++||.. ..+.+.|.. |+.. .|.+|++.. ++...++.+++.+ .+.. ..++ +..|...
T Consensus 264 ~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 264 IRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ 341 (368)
T ss_dssp CEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 7899999953 234555555 5543 678888766 5666666665543 2222 1233 3344444
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy15151 380 TDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 380 ~~g~s~~di~~l~~~A~~~A 399 (431)
....+.+++.+++..|+..+
T Consensus 342 ~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 342 EWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CCTTHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHHhC
Confidence 44456688888888887654
No 91
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.31 E-value=5.1e-12 Score=99.22 Aligned_cols=73 Identities=37% Similarity=0.622 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHh
Q psy15151 350 NEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAK 422 (431)
Q Consensus 350 ~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~~~ 422 (431)
|.++|.+||+.+++++++..++|+..|+..|.||||+||.++|++|++.|++++...|+.+||..|++++.+.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999865
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.27 E-value=1.5e-11 Score=109.43 Aligned_cols=135 Identities=13% Similarity=0.047 Sum_probs=82.0
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc----CCceEEeehhhhh
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAGPQLV 249 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~~~l~ 249 (431)
..+|+++++.....+...+.+.... ..+.+..+.+++|+||||||||+|++++++.. +..++.+++.++.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFV------HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHH------HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHH------HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 5678888764333222222222111 12222356889999999999999999999875 6677888888776
Q ss_pred HhhhcchHHH-HHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 250 QMFIGDGAKL-VRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 250 ~~~~g~~~~~-~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
..+....... ...++... ..|.+|+|||++... .++..+..+.++++.... .+..+|+|||.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~---------~~~~~~~~l~~ll~~~~~----~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 80 FRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER---------LSDWQRELISYIITYRYN----NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC---------CCHHHHHHHHHHHHHHHH----TTCEEEEECCCCS
T ss_pred HHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHHH----cCCCEEEEcCCCh
Confidence 5543211100 01122222 256799999998531 255666777788876431 2456888888654
Q ss_pred C
Q psy15151 329 I 329 (431)
Q Consensus 329 ~ 329 (431)
.
T Consensus 145 ~ 145 (180)
T 3ec2_A 145 Q 145 (180)
T ss_dssp C
T ss_pred h
Confidence 3
No 93
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.24 E-value=7.2e-11 Score=140.75 Aligned_cols=140 Identities=17% Similarity=0.332 Sum_probs=97.6
Q ss_pred CCCCceeeCCCCCchHHHHHH-HHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHH---------------hCCCeE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARA-CAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAK---------------EKAPAI 274 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~laka-la~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~---------------~~~p~v 274 (431)
.++++||+||||||||++|+. ++...+..++.++++...+ ...+...++... .+.+.|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 458999999999999999955 5544566777888765432 223333333220 123479
Q ss_pred EEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCC--------CCCeEEEEEeCCCC-----CCChhhhcCCCcc
Q psy15151 275 IFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS--------TADIKVIAATNRVD-----ILDPALLRSGRLD 341 (431)
Q Consensus 275 l~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~--------~~~v~vI~ttn~~~-----~l~~~l~r~gR~~ 341 (431)
|||||++.....+.+ .......|.++++.. ++.. -.++.+|+|+|++. .++|+++| ||
T Consensus 1340 lFiDEinmp~~d~yg-----~q~~lelLRq~le~g-g~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYG-----SQNVVLFLRQLMEKQ-GFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEEETTTCSCCCSSS-----CCHHHHHHHHHHHTS-SEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred EEecccccccccccC-----chhHHHHHHHHHhcC-CEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 999999975443322 224556677777542 2111 13688999999994 79999999 99
Q ss_pred eEEEcCCCCHHHHHHHHHHHHhcC
Q psy15151 342 RKIEFPHPNEEARARIMQIHSRKM 365 (431)
Q Consensus 342 ~~i~~~~p~~~~r~~Il~~~l~~~ 365 (431)
.++.++.|+.+++..|+..+++..
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999887643
No 94
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.22 E-value=2.2e-11 Score=99.02 Aligned_cols=101 Identities=24% Similarity=0.389 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccCCcEEEEecCCCceEEEeec
Q psy15151 50 EVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVI 129 (431)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (431)
...+++.+++.++++++.++++++.++.+|+.+|++.+.+|+. .++++.++++.+++++.
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~~--------------------~~iVk~s~g~~~~V~v~ 67 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILEDG--------------------RVVVKSSTGPKFVVNTS 67 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTTS--------------------CEEEEETTSCEEEECBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecCC--------------------EEEEEeCCCCEEEEEcc
Confidence 3455667777777888888999999999999999999999873 68888899999999999
Q ss_pred ccccccCCCCCCeEEEcCcchhhhhcCchhHHHHhhhhhcc
Q psy15151 130 GLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVD 170 (431)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 170 (431)
+.++++.++||++|+++.+++.++..||.+.++.+..|.++
T Consensus 68 ~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~M~ve 108 (109)
T 2wg5_A 68 QYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVE 108 (109)
T ss_dssp TTSCTTTCCTTCEEEEETTTCCEEEEEC-------------
T ss_pred cccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchheEec
Confidence 99999999999999999999999999999999999998753
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.18 E-value=2e-09 Score=104.91 Aligned_cols=194 Identities=21% Similarity=0.260 Sum_probs=118.3
Q ss_pred ccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 170 ~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
...|...-..++|.+..++.+.+.+.. +..++|+||+|+|||+|++.+++..+ .+.+++....
T Consensus 4 ~~~~~~~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~ 66 (350)
T 2qen_A 4 DLRPKTRREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELY 66 (350)
T ss_dssp CCSCCCSGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHH
T ss_pred CCCCCCChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccc
Confidence 334555667899999999999887652 15799999999999999999999875 6666664331
Q ss_pred ------------Hh---hhcc-----------------h----HHHHHHHHH----HHHhCCCeEEEEccccccccCCCC
Q psy15151 250 ------------QM---FIGD-----------------G----AKLVRDAFA----LAKEKAPAIIFIDELDAIGTKRFD 289 (431)
Q Consensus 250 ------------~~---~~g~-----------------~----~~~~~~lf~----~a~~~~p~vl~iDEid~l~~~r~~ 289 (431)
.. .++. . ...+..+++ .+....|.+|+|||++.+....
T Consensus 67 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~-- 144 (350)
T 2qen_A 67 AERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG-- 144 (350)
T ss_dssp HTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT--
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC--
Confidence 10 0110 0 011222332 2222238899999999984310
Q ss_pred CCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC---------CChhhhcCCCcceEEEcCCCCHHHHHHHHHH
Q psy15151 290 SEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI---------LDPALLRSGRLDRKIEFPHPNEEARARIMQI 360 (431)
Q Consensus 290 ~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~---------l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~ 360 (431)
...+.+....+..+++.. .++.+|+|+..... ....+. ||+...+.+++++.++..+++..
T Consensus 145 --~~~~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~ 214 (350)
T 2qen_A 145 --SRGGKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKR 214 (350)
T ss_dssp --TTTTHHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHH
T ss_pred --ccchhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHH
Confidence 001234444454554431 36777777654211 111222 36667899999999999999988
Q ss_pred HHhcCCCC-CCCCHHHHHHHcCCCCHHHHHHHHH
Q psy15151 361 HSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCV 393 (431)
Q Consensus 361 ~l~~~~~~-~~~~~~~la~~~~g~s~~di~~l~~ 393 (431)
.+...+.. .+.....+...+.|+. .-+..++.
T Consensus 215 ~~~~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 215 GFREVNLDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 77654432 1223456667777664 44555544
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.18 E-value=1.2e-09 Score=106.60 Aligned_cols=191 Identities=16% Similarity=0.203 Sum_probs=120.7
Q ss_pred ccCCCCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh-
Q psy15151 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL- 248 (431)
Q Consensus 170 ~~~~~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l- 248 (431)
...|......++|.+..++.+.. +.. ..++|+||+|+|||+|++.+++..+..++.+++...
T Consensus 5 ~~~~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~ 67 (357)
T 2fna_A 5 DTSPKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 67 (357)
T ss_dssp CSSCCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGT
T ss_pred CCCCCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhc
Confidence 34455667789999999999887 541 479999999999999999999988777777776542
Q ss_pred ----------hHhh---h--------------cc------------------hHHHHHHHHHHHHhC--CCeEEEEcccc
Q psy15151 249 ----------VQMF---I--------------GD------------------GAKLVRDAFALAKEK--APAIIFIDELD 281 (431)
Q Consensus 249 ----------~~~~---~--------------g~------------------~~~~~~~lf~~a~~~--~p~vl~iDEid 281 (431)
...+ + +. ....+..+++..... .|.+|+|||++
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~ 147 (357)
T 2fna_A 68 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQ 147 (357)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGG
T ss_pred cccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHH
Confidence 0000 0 00 011234455544442 38899999999
Q ss_pred ccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC---------ChhhhcCCCcceEEEcCCCCHH
Q psy15151 282 AIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL---------DPALLRSGRLDRKIEFPHPNEE 352 (431)
Q Consensus 282 ~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l---------~~~l~r~gR~~~~i~~~~p~~~ 352 (431)
.+.... +.++...+..+.+.. .++.+|+|++....+ ...+ .+|+...+.+++++.+
T Consensus 148 ~~~~~~-------~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~ 212 (357)
T 2fna_A 148 ELVKLR-------GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSRE 212 (357)
T ss_dssp GGGGCT-------TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHH
T ss_pred HhhccC-------chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHH
Confidence 984310 112233444444331 357777777643211 1112 2366678999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHH
Q psy15151 353 ARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVE 394 (431)
Q Consensus 353 ~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~ 394 (431)
+..+++...+...+...+ +...+...+.|+. .-+..++..
T Consensus 213 e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P-~~l~~~~~~ 252 (357)
T 2fna_A 213 EAIEFLRRGFQEADIDFK-DYEVVYEKIGGIP-GWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCH-HHHHHHHHH
Confidence 999999887754333322 2477888887765 445555543
No 97
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.13 E-value=1.6e-11 Score=94.99 Aligned_cols=80 Identities=23% Similarity=0.406 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-Hh-hhcccCC
Q psy15151 352 EARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQ-AK-KKANLNY 429 (431)
Q Consensus 352 ~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~~-~~-~~~~~~~ 429 (431)
++|.+||+.+++++++.+++|+..|+..|.||||+||.++|++|++.|++++...|+.+||..|+.++. +. ....+.|
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~~~~~~~~ 80 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDF 80 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC----------
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcCChHHHHh
Confidence 468999999999998888999999999999999999999999999999999999999999999999985 43 3456788
Q ss_pred CC
Q psy15151 430 YA 431 (431)
Q Consensus 430 ~~ 431 (431)
|.
T Consensus 81 y~ 82 (82)
T 2dzn_B 81 YK 82 (82)
T ss_dssp --
T ss_pred hC
Confidence 74
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.06 E-value=1.6e-10 Score=104.51 Aligned_cols=103 Identities=21% Similarity=0.206 Sum_probs=62.5
Q ss_pred CCCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhH
Q psy15151 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQ 250 (431)
Q Consensus 174 ~~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~ 250 (431)
..+|+++++.+.....+.+.+...+... . ....+.+++|+||||||||++|++++..+ +.+++.++++++..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEY---E--PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHC---C--SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHh---h--hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 4578888876643333322222211110 0 00123789999999999999999999976 56788899988766
Q ss_pred hhhcchH-HHHHHHHHHHHhCCCeEEEEcccccc
Q psy15151 251 MFIGDGA-KLVRDAFALAKEKAPAIIFIDELDAI 283 (431)
Q Consensus 251 ~~~g~~~-~~~~~lf~~a~~~~p~vl~iDEid~l 283 (431)
.+..... ..+..++..... +.+|+|||++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 96 ELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 5432110 011223333333 349999999775
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.00 E-value=4.7e-10 Score=96.92 Aligned_cols=101 Identities=16% Similarity=0.255 Sum_probs=69.0
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 287 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r 287 (431)
++..++|+||+|+|||+|+++++... +...+++++.++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~--- 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG--- 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC---
Confidence 34679999999999999999999976 666788887765432 012346799999999862
Q ss_pred CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeC-CCCCCC--hhhhcCCCcce
Q psy15151 288 FDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN-RVDILD--PALLRSGRLDR 342 (431)
Q Consensus 288 ~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn-~~~~l~--~~l~r~gR~~~ 342 (431)
...+..+..+++.+.. .+..++|+||| .|..+. +.+.+ |+..
T Consensus 97 --------~~~~~~l~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~~ 141 (149)
T 2kjq_A 97 --------NEEQALLFSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMAY 141 (149)
T ss_dssp --------SHHHHHHHHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGGG
T ss_pred --------hHHHHHHHHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHhc
Confidence 2226777788776532 12333556776 444333 78887 7654
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.96 E-value=2e-08 Score=120.07 Aligned_cols=183 Identities=16% Similarity=0.188 Sum_probs=121.5
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCC
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSE 291 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~ 291 (431)
..+.++.||+|||||++++++|+.+|.+++.++|++-+. ...++.+|..+... .++++||||+.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~-------- 709 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRL-------- 709 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSS--------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhc--------
Confidence 467899999999999999999999999999999986543 23445566555443 269999999998
Q ss_pred CcCcHHHHHHHHHHHHhhc-------------C--CCCCCCeEEEEEeCC----CCCCChhhhcCCCcceEEEcCCCCHH
Q psy15151 292 KAGDREVQRTMLELLNQLD-------------G--FSSTADIKVIAATNR----VDILDPALLRSGRLDRKIEFPHPNEE 352 (431)
Q Consensus 292 ~~~~~~~~~~l~~lL~~~~-------------~--~~~~~~v~vI~ttn~----~~~l~~~l~r~gR~~~~i~~~~p~~~ 352 (431)
++++...+.+.+..+. | +.-..++.|++|.|+ ...++.++++ || +.+.+..|+.+
T Consensus 710 ---~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 710 ---DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 7788887765554321 1 112356778899994 4568999998 88 68999999999
Q ss_pred HHHHHHHHHHhcCCCCCCC-----CH-HHHHHHc-----CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q psy15151 353 ARARIMQIHSRKMNVSPDV-----NY-EELSRST-----DDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 353 ~r~~Il~~~l~~~~~~~~~-----~~-~~la~~~-----~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~ 419 (431)
...+|+-... ++...... .+ ..+.... ..|.-+.++.++..|+...... .-...-+.+|+.++
T Consensus 784 ~i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~---~~e~~~l~~al~~~ 857 (2695)
T 4akg_A 784 TIAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEF---GEGEKTVVESLKRV 857 (2695)
T ss_dssp HHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHS---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccC---CcHHHHHHHHHHHh
Confidence 9888864322 22111100 00 1111111 2367788888888776543332 12334455555554
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.93 E-value=2.1e-10 Score=110.53 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=69.0
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCCc--eEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccC
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKST--FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~~--~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~ 286 (431)
++++..++|+||||||||+||.++|...+.+ |+.+...+.++.+.......+..+++.+.... +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 3455678999999999999999999875444 55552233333333344555556666666654 9999999998554
Q ss_pred CCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChh
Q psy15151 287 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPA 333 (431)
Q Consensus 287 r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~ 333 (431)
..+....+ .+.+.+.+++..+.++....++.+|+++| +...+++
T Consensus 198 ~~~~s~~G--~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~dea 241 (331)
T 2vhj_A 198 AGGNTTSG--GISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDK 241 (331)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSS
T ss_pred cccccccc--hHHHHHHHHHHHHHHHHhhCCCEEEEEeC-Ccccchh
Confidence 32211100 11233444444443333344677888888 4455544
No 102
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.89 E-value=8.6e-10 Score=106.87 Aligned_cols=70 Identities=24% Similarity=0.322 Sum_probs=48.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc----CCceEEeehhhhhHhhhcch-HHHHHHHHHHHHhCCCeEEEEcccccc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAGPQLVQMFIGDG-AKLVRDAFALAKEKAPAIIFIDELDAI 283 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~~~l~~~~~g~~-~~~~~~lf~~a~~~~p~vl~iDEid~l 283 (431)
+.+++|+||||||||+||+++|..+ +.+++.+++++++..+.+.. .......+..... +.+|+|||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN--VPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT--SSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 5789999999999999999999854 47888889988877654321 1112222333332 359999999764
No 103
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.81 E-value=5.4e-09 Score=94.64 Aligned_cols=127 Identities=19% Similarity=0.203 Sum_probs=79.4
Q ss_pred CCceeeCCCCCchHHHHHHHHHH--------cC-CceEEeehhhhhHhhh----------cchHH--HHHHHHHHH--Hh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ--------TK-STFLKLAGPQLVQMFI----------GDGAK--LVRDAFALA--KE 269 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~--------~~-~~~i~i~~~~l~~~~~----------g~~~~--~~~~lf~~a--~~ 269 (431)
-..|++|+||||||++|.+++.. .+ .+++..++.++..... ..... ....+++.+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 35789999999999999886543 33 6666666655432111 00000 011223321 23
Q ss_pred CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCC
Q psy15151 270 KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHP 349 (431)
Q Consensus 270 ~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p 349 (431)
+..+||+|||++.+.+.+.+.... .+++..+.. .....+-||++|+.+..++.+++. |++..+++++|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~---------~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKI---------PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCC---------CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccchh---------HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 446799999999997655221111 123444332 234566789999999999999988 99999999876
Q ss_pred CH
Q psy15151 350 NE 351 (431)
Q Consensus 350 ~~ 351 (431)
..
T Consensus 154 ~~ 155 (199)
T 2r2a_A 154 KM 155 (199)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 104
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=98.76 E-value=1.8e-08 Score=77.74 Aligned_cols=76 Identities=21% Similarity=0.419 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccCCcEEEEecCCCceEEEeecccccccCCCCCCe
Q psy15151 63 EKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDL 142 (431)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (431)
+++..+++++++++.+|+.+|++.+.+|+ ..++++.++++.+++++.+.++++.++||++
T Consensus 2 ~ev~~lkeei~~L~~~P~~vG~v~e~~dd--------------------~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~r 61 (85)
T 3h43_A 2 KENEILRRELDRMRVPPLIVGTVVDKVGE--------------------RKVVVKSSTGPSFLVNVSHFVNPDDLAPGKR 61 (85)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEEEEEET--------------------TEEEEEETTSSEEEEEBCTTSCGGGCCTTCE
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEEcCC--------------------CEEEEEeCCCCeEEEEecCccCHHHCCCCCE
Confidence 35778889999999999999999999997 4889999999999999999999999999999
Q ss_pred EEEcCcchhhhhcCch
Q psy15151 143 VGVNKDSYLILETLPA 158 (431)
Q Consensus 143 ~~~~~~~~~~~~~l~~ 158 (431)
|+++++++.+++.||.
T Consensus 62 VaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 62 VCLNQQTLTVVDVLPE 77 (85)
T ss_dssp EEECTTTCCEEEECC-
T ss_pred EEECCcccCHhhhhhh
Confidence 9999999999998885
No 105
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.70 E-value=1.2e-08 Score=92.04 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=62.8
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCC
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~ 288 (431)
++..+++|||||||||||++|.++|+.+...++.+..+.. .+. +..+. ...||+|||+|.-+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s--~f~----------l~~l~--~~kIiiLDEad~~~---- 116 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS--HFW----------LEPLT--DTKVAMLDDATTTC---- 116 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS--CGG----------GGGGT--TCSSEEEEEECHHH----
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc--hhh----------hcccC--CCCEEEEECCCchh----
Confidence 3444679999999999999999999987655443321100 000 01111 13499999998521
Q ss_pred CCCCcCcHHHHHHHHHHHHhh----cCCCCC----CCeEEEEEeCCCC---CCChhhhcCCCcceEEEcCCC
Q psy15151 289 DSEKAGDREVQRTMLELLNQL----DGFSST----ADIKVIAATNRVD---ILDPALLRSGRLDRKIEFPHP 349 (431)
Q Consensus 289 ~~~~~~~~~~~~~l~~lL~~~----~~~~~~----~~v~vI~ttn~~~---~l~~~l~r~gR~~~~i~~~~p 349 (431)
.......+..+|+.. |..... ....+|.|||..- ..-+.+.+ |+ ..+.|+.|
T Consensus 117 ------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri-~~f~F~~~ 179 (212)
T 1tue_A 117 ------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RI-TVFEFPNA 179 (212)
T ss_dssp ------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SC-EEEECCSC
T ss_pred ------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hE-EEEEcCCC
Confidence 111222333444431 111111 2456899999732 22346777 87 46777633
No 106
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=98.67 E-value=7.9e-08 Score=87.73 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeeeeecccCCCCCccccccccccccccCCcEE
Q psy15151 35 SRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCA 114 (431)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (431)
.+++.++.++..|..++.+|.+.++.+++++..+++++++|+.+|+.++++.+..+. ..+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~dd--------------------~~a 113 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHDD--------------------DTV 113 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECSS--------------------SCE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcCC--------------------CEE
Confidence 367889999999999999999999999999999999999999999999999998876 356
Q ss_pred EEecCCCceEEEeecccccccCCCCCCeEEEcCcchhhhhcCchhH
Q psy15151 115 VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEY 160 (431)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (431)
+++. +++.+++.+.+.++.+.++||+.|.++ .+..+++.++.+.
T Consensus 114 iV~s-~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E~ 157 (251)
T 3m9b_A 114 DVFT-SGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFEA 157 (251)
T ss_dssp EEEC-SSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCCC
T ss_pred EEEe-CCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCCC
Confidence 6664 668899999999999999999999996 6888888888644
No 107
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.61 E-value=3.1e-07 Score=89.87 Aligned_cols=175 Identities=13% Similarity=0.091 Sum_probs=111.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CC-c--eEEeehhhhhHhhhcchHHHHHHHHHHHH----hCCCeEEEEccc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KS-T--FLKLAGPQLVQMFIGDGAKLVRDAFALAK----EKAPAIIFIDEL 280 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~-~--~i~i~~~~l~~~~~g~~~~~~~~lf~~a~----~~~p~vl~iDEi 280 (431)
.+..+|||||+|+||++.++.+++.. +. + .+.++. ...++.+++.+. .+...|++|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----------NTDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----------TCCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----------CCCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 34679999999999999999998864 21 2 222221 122344444433 245679999999
Q ss_pred cc-cccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC------CCChhhhcCCCcceEEEcCCCCHHH
Q psy15151 281 DA-IGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD------ILDPALLRSGRLDRKIEFPHPNEEA 353 (431)
Q Consensus 281 d~-l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~------~l~~~l~r~gR~~~~i~~~~p~~~~ 353 (431)
|. + +.+.++.|+..++. .+.++++|++++..+ .+.+++.+ |. .++.|.+++..+
T Consensus 86 ~~kl-----------~~~~~~aLl~~le~-----p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~ 146 (343)
T 1jr3_D 86 ENGP-----------NAAINEQLLTLTGL-----LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQ 146 (343)
T ss_dssp SSCC-----------CTTHHHHHHHHHTT-----CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTH
T ss_pred CCCC-----------ChHHHHHHHHHHhc-----CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHH
Confidence 98 7 33445666666643 334566666665433 35567777 66 579999999999
Q ss_pred HHHHHHHHHhcCCCCCC-CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q psy15151 354 RARIMQIHSRKMNVSPD-VNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 354 r~~Il~~~l~~~~~~~~-~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~~~~~It~ed~~~Al~~~ 419 (431)
....++..++..++.-+ ..+..|+..+. .+.+++.+.+......+ +...||.+++...+...
T Consensus 147 l~~~l~~~~~~~g~~i~~~a~~~l~~~~~-gdl~~~~~elekl~l~~---~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 147 LPRWVAARAKQLNLELDDAANQVLCYCYE-GNLLALAQALERLSLLW---PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp HHHHHHHHHHHTTCEECHHHHHHHHHSST-TCHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhc-hHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhhh
Confidence 99999988877665422 22445555443 34555555555554432 34579999987776544
No 108
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.59 E-value=3.1e-08 Score=98.25 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=76.5
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEcccccccc-
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGT- 285 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~- 285 (431)
++++++..++|+||||+|||+++++++...+..++.+..+.-.. ...++.+| ...++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~------~~~lg~~~------q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRL------NFELGVAI------DQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTH------HHHHGGGT------TCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhH------HHHHHHhc------chhHHHHHHHHHHHHH
Confidence 47778889999999999999999999998877665544332100 00111122 335789999999865
Q ss_pred CCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCC
Q psy15151 286 KRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPH 348 (431)
Q Consensus 286 ~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~ 348 (431)
.+.-. . +.. .. .+..+.+.+++ .+.|++++|+++.+ +++++|+|++..+....
T Consensus 232 ~r~l~-~-~~~-~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLP-S-GQG-IN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCC-C-CSH-HH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcc-c-cCc-ch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22110 0 111 10 12233333443 35578899999999 78999999987665544
No 109
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.55 E-value=1.3e-07 Score=109.82 Aligned_cols=123 Identities=22% Similarity=0.244 Sum_probs=78.1
Q ss_pred hHHHHhcC---CCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh----hHhhhc------------chHH
Q psy15151 201 KEKFVNLG---IQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL----VQMFIG------------DGAK 258 (431)
Q Consensus 201 ~~~~~~~g---~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l----~~~~~g------------~~~~ 258 (431)
+++-..+| ++++.+++|+||||||||+||.+++.+. +.....++..+. .....| ..+.
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~ 1492 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1492 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHH
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHH
Confidence 33334444 8889999999999999999999998763 445556655432 122223 3345
Q ss_pred HHHHHHHHHHhCCCeEEEEccccccccCC---CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEE
Q psy15151 259 LVRDAFALAKEKAPAIIFIDELDAIGTKR---FDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAA 323 (431)
Q Consensus 259 ~~~~lf~~a~~~~p~vl~iDEid~l~~~r---~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~t 323 (431)
.++.++..++...|++|+||+++.+.+.+ .+........-.+.+.++|..+.+.....+++||++
T Consensus 1493 ~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~t 1560 (2050)
T 3cmu_A 1493 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 1560 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 66777788888999999999999887642 111111111123455566666555445566655554
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.51 E-value=1e-06 Score=106.28 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=95.0
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEK 292 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~ 292 (431)
.+..+.||+|||||.+++.+|+.+|.+++.++|++-+. ...+..+|..+... .+..+||||+++
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcC---------
Confidence 45679999999999999999999999999999986432 23344555544432 358999999998
Q ss_pred cCcHHHHHHHHHHHHhh-------------c-C--CCCCCCeEEEEEeCC----CCCCChhhhcCCCcceEEEcCCCCHH
Q psy15151 293 AGDREVQRTMLELLNQL-------------D-G--FSSTADIKVIAATNR----VDILDPALLRSGRLDRKIEFPHPNEE 352 (431)
Q Consensus 293 ~~~~~~~~~l~~lL~~~-------------~-~--~~~~~~v~vI~ttn~----~~~l~~~l~r~gR~~~~i~~~~p~~~ 352 (431)
+.++...+.+.+..+ . | +.-+.++.|++|.|+ ...++.+++. || +.|.+..||.+
T Consensus 669 --~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 669 --EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 778888877665531 1 1 112346778999994 4578999998 88 67999999999
Q ss_pred HHHHHHH
Q psy15151 353 ARARIMQ 359 (431)
Q Consensus 353 ~r~~Il~ 359 (431)
...+|+-
T Consensus 744 ~i~ei~L 750 (3245)
T 3vkg_A 744 MIAQVML 750 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888764
No 111
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.51 E-value=4.9e-07 Score=108.96 Aligned_cols=140 Identities=19% Similarity=0.304 Sum_probs=93.1
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH-cCCceEEeehhhhhHhhhcchHHHHHHHHHHH----H------------hCCCe
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ-TKSTFLKLAGPQLVQMFIGDGAKLVRDAFALA----K------------EKAPA 273 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~-~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a----~------------~~~p~ 273 (431)
..+++||+||||||||++++..... .+.+++.++++...+ ...+...++.- + .+...
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 4578999999999999887655444 455677888765432 22232333221 0 12236
Q ss_pred EEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCC-------CCCCeEEEEEeCCCC-----CCChhhhcCCCcc
Q psy15151 274 IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS-------STADIKVIAATNRVD-----ILDPALLRSGRLD 341 (431)
Q Consensus 274 vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~-------~~~~v~vI~ttn~~~-----~l~~~l~r~gR~~ 341 (431)
|+||||++.-..... +...+...|.++++...-.. .-.++.+|+|+|+|. .++++|.| ||.
T Consensus 1377 VlFiDDiNmp~~D~y-----GtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~ 1449 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKY-----GTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP 1449 (3245)
T ss_dssp EEEETTTTCCCCCTT-----SCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC
T ss_pred EEEecccCCCCcccc-----ccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce
Confidence 999999987433221 22345677778887532111 124678999999873 58999999 995
Q ss_pred eEEEcCCCCHHHHHHHHHHHHhc
Q psy15151 342 RKIEFPHPNEEARARIMQIHSRK 364 (431)
Q Consensus 342 ~~i~~~~p~~~~r~~Il~~~l~~ 364 (431)
.+.++.|+.+....|+..++..
T Consensus 1450 -vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1450 -ILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp -EEECCCCCHHHHHHHHHHHHHH
T ss_pred -EEEeCCCCHHHHHHHHHHHHHH
Confidence 6999999999999998766543
No 112
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.48 E-value=6e-07 Score=79.64 Aligned_cols=124 Identities=17% Similarity=0.233 Sum_probs=67.9
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh---------------------------------hHhhhcchHHHH
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL---------------------------------VQMFIGDGAKLV 260 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l---------------------------------~~~~~g~~~~~~ 260 (431)
.+.|.||+|+|||||++.++...+..+.-....+. ...+.+...+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 47899999999999999999976533322111110 011111112222
Q ss_pred --HHHHHHH-----HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC--CCCCC
Q psy15151 261 --RDAFALA-----KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR--VDILD 331 (431)
Q Consensus 261 --~~lf~~a-----~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~--~~~l~ 331 (431)
+-.+..+ ....|.++++||++-... -+......+.+++.. .+..+|++++. ...+-
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~--------ld~~~~~~l~~~l~~-------~~~~~i~~~H~~h~~~~~ 146 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--------FSKKFRDLVRQIMHD-------PNVNVVATIPIRDVHPLV 146 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--------GCHHHHHHHHHHHTC-------TTSEEEEECCSSCCSHHH
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCccc--------CCHHHHHHHHHHHhc-------CCCeEEEEEccCCCchHH
Confidence 2223332 456789999999754311 155666666666643 23445666642 22233
Q ss_pred hhhhcCCCcc-eEEEcCCCCHHHH
Q psy15151 332 PALLRSGRLD-RKIEFPHPNEEAR 354 (431)
Q Consensus 332 ~~l~r~gR~~-~~i~~~~p~~~~r 354 (431)
..+.+ |-+ .++++...+.++.
T Consensus 147 ~~i~~--r~~~~i~~~~~~~r~~~ 168 (178)
T 1ye8_A 147 KEIRR--LPGAVLIELTPENRDVI 168 (178)
T ss_dssp HHHHT--CTTCEEEECCTTTTTTH
T ss_pred HHHHh--cCCcEEEEecCcCHHHH
Confidence 45555 532 5677776665443
No 113
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.44 E-value=2.7e-07 Score=86.70 Aligned_cols=120 Identities=20% Similarity=0.228 Sum_probs=68.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhcchHHHHHHHHHHHHhCCCeEEEEccccccccCCCCC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 290 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~ 290 (431)
+.++++||||||||||++|+++|+.... +..++.+. ..+ .|.. .....|++.||....
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~~f----------~l~~--~~~k~i~l~Ee~~~~------- 160 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--ENF----------PFND--CVDKMVIWWEEGKMT------- 160 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--SSC----------TTGG--GSSCSEEEECSCCEE-------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--ccc----------cccc--ccccEEEEeccccch-------
Confidence 3467999999999999999999997543 22222211 000 1111 122347777777654
Q ss_pred CCcCcHHHHHHHHHHHHh----hcCCCC----CCCeEEEEEeCC-C----------CCCChhhhcCCCcceEEEcC----
Q psy15151 291 EKAGDREVQRTMLELLNQ----LDGFSS----TADIKVIAATNR-V----------DILDPALLRSGRLDRKIEFP---- 347 (431)
Q Consensus 291 ~~~~~~~~~~~l~~lL~~----~~~~~~----~~~v~vI~ttn~-~----------~~l~~~l~r~gR~~~~i~~~---- 347 (431)
.+.+..+-.++.. ++.... -....+|+|||. + +...+.|.+ |+ ..+.|+
T Consensus 161 -----~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~~p 232 (267)
T 1u0j_A 161 -----AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRRLD 232 (267)
T ss_dssp -----TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSCCC
T ss_pred -----hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCcCC
Confidence 1222334444431 111111 145668899986 1 134467887 87 577777
Q ss_pred ----CCCHHHHHHHHHH
Q psy15151 348 ----HPNEEARARIMQI 360 (431)
Q Consensus 348 ----~p~~~~r~~Il~~ 360 (431)
+.+.++....+..
T Consensus 233 ~~~~~lt~~~~~~f~~w 249 (267)
T 1u0j_A 233 HDFGKVTKQEVKDFFRW 249 (267)
T ss_dssp TTSCCCCHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHH
Confidence 5667777777763
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.14 E-value=6.8e-06 Score=74.86 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=28.2
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEee
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLA 244 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~ 244 (431)
|++++..++|+||||+|||+|++.++.. .+..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4556778999999999999999999864 244554444
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.10 E-value=6.6e-06 Score=75.72 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=50.7
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH--c-------CCceEEeehhh------hhH--hhhcc---------------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ--T-------KSTFLKLAGPQ------LVQ--MFIGD--------------- 255 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~--~-------~~~~i~i~~~~------l~~--~~~g~--------------- 255 (431)
|++++..++|+||||+|||+|++.++.. . +...++++... +.. ..+|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4567788999999999999999999984 2 34566666543 100 00111
Q ss_pred hHH----HHHHHHHHHHhCCCeEEEEcccccccc
Q psy15151 256 GAK----LVRDAFALAKEKAPAIIFIDELDAIGT 285 (431)
Q Consensus 256 ~~~----~~~~lf~~a~~~~p~vl~iDEid~l~~ 285 (431)
... .+..+.+.+....|.+|+||++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 111 122244455557899999999998764
No 116
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.10 E-value=4.2e-05 Score=80.08 Aligned_cols=171 Identities=11% Similarity=0.093 Sum_probs=96.2
Q ss_pred CcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHH-------cCCceEEeehhh-
Q psy15151 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ-------TKSTFLKLAGPQ- 247 (431)
Q Consensus 176 ~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~-------~~~~~i~i~~~~- 247 (431)
....++|.+..+..+.+.+...- ...+.++|+||+|+|||+||+.+++. .....+.++.+.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK-----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST-----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCeecccHHHHHHHHHHHhccc-----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 45678999999999988776320 13456899999999999999999752 212233333221
Q ss_pred ----hhHhh------hc----------chHHH-HHHHHHHHHh-CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHH
Q psy15151 248 ----LVQMF------IG----------DGAKL-VRDAFALAKE-KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 305 (431)
Q Consensus 248 ----l~~~~------~g----------~~~~~-~~~lf~~a~~-~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~l 305 (431)
+...+ ++ ..... ...+...... ..|.+|+||+++.. . .
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~----~ 250 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------W----V 250 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------H----H
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------H----H
Confidence 11111 11 01111 1222222222 25789999999753 1 1
Q ss_pred HHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEE-cCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCC
Q psy15151 306 LNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIE-FPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFN 384 (431)
Q Consensus 306 L~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~-~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s 384 (431)
+..+ ..+..||+||....... .. . +.. ..+. +.+++.++-.+++...+..-..........|+..+.|..
T Consensus 251 l~~l-----~~~~~ilvTsR~~~~~~-~~-~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 251 LKAF-----DSQCQILLTTRDKSVTD-SV-M-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp HHTT-----CSSCEEEEEESCGGGGT-TC-C-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred HHHh-----cCCCeEEEECCCcHHHH-hc-C-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 2222 23556777876543211 00 1 122 1222 247899999999988775311111234677888888876
Q ss_pred HH
Q psy15151 385 GA 386 (431)
Q Consensus 385 ~~ 386 (431)
-+
T Consensus 322 La 323 (591)
T 1z6t_A 322 LV 323 (591)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 117
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.08 E-value=5e-06 Score=75.29 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=32.1
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP 246 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~ 246 (431)
|++++..++|+||||+|||++++.++...+...+.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 566778899999999999999999998656667776654
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.07 E-value=8.8e-06 Score=80.34 Aligned_cols=118 Identities=23% Similarity=0.259 Sum_probs=64.5
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhHh----hhcc-----------h-HHHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQM----FIGD-----------G-AKLVRDAFALAK 268 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~~----~~g~-----------~-~~~~~~lf~~a~ 268 (431)
|++++..++|+||||+|||+||..++.. .+.++++++...-... ..|. . +..+..+...++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 4567778999999999999999998875 3556677665432111 1111 1 122222222334
Q ss_pred hCCCeEEEEccccccccCCCCCCCcCcH---HHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q psy15151 269 EKAPAIIFIDELDAIGTKRFDSEKAGDR---EVQRTMLELLNQLDGFSSTADIKVIAATN 325 (431)
Q Consensus 269 ~~~p~vl~iDEid~l~~~r~~~~~~~~~---~~~~~l~~lL~~~~~~~~~~~v~vI~ttn 325 (431)
...+.+|+||.+..+.....-....++. ...+.+.+++..+.......++.||++..
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 4678999999999987432110000110 11133445555543333445666666644
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.02 E-value=5e-06 Score=81.65 Aligned_cols=117 Identities=20% Similarity=0.270 Sum_probs=65.1
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhhH----hhhc------------chHHHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLVQ----MFIG------------DGAKLVRDAFALAK 268 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~~----~~~g------------~~~~~~~~lf~~a~ 268 (431)
|++++.-++|+||||+|||+|+..++.. .+..+++++...... .-+| .....+..+...++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 3456678999999999999999999876 355666776643211 1111 11122222223334
Q ss_pred hCCCeEEEEcccccccc-CCCCCCCcCcH---HHHHHHHHHHHhhcCCCCCCCeEEEEEeC
Q psy15151 269 EKAPAIIFIDELDAIGT-KRFDSEKAGDR---EVQRTMLELLNQLDGFSSTADIKVIAATN 325 (431)
Q Consensus 269 ~~~p~vl~iDEid~l~~-~r~~~~~~~~~---~~~~~l~~lL~~~~~~~~~~~v~vI~ttn 325 (431)
...+.+++||.+..+.+ ...++. .++. ...+.+.+++..+..+....++.||++..
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~-~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inq 196 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGA-MGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQ 196 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTC-CCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhccc-chhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 57789999999998875 111111 0111 12244445555443333344565666543
No 120
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.02 E-value=4.8e-06 Score=81.75 Aligned_cols=78 Identities=24% Similarity=0.325 Sum_probs=50.0
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhh----Hhhhcc------------hHHHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLV----QMFIGD------------GAKLVRDAFALAK 268 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~----~~~~g~------------~~~~~~~lf~~a~ 268 (431)
|++++..++|+||||+|||+||..++.. .+...++++...-. ...+|. ....+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 4556778999999999999999999864 34566666543211 111121 1122222223344
Q ss_pred hCCCeEEEEcccccccc
Q psy15151 269 EKAPAIIFIDELDAIGT 285 (431)
Q Consensus 269 ~~~p~vl~iDEid~l~~ 285 (431)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999863
No 121
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.00 E-value=1.8e-05 Score=73.08 Aligned_cols=114 Identities=21% Similarity=0.224 Sum_probs=63.1
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHH--H--cCCceEEeehhhhhH------hhhcc----------------------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAA--Q--TKSTFLKLAGPQLVQ------MFIGD---------------------- 255 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~--~--~~~~~i~i~~~~l~~------~~~g~---------------------- 255 (431)
|++++..+.|.||+|+|||+|++.++. . .+...+.++...... ..+|.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 455778899999999999999999983 2 233334433211100 00000
Q ss_pred --------------hHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEE
Q psy15151 256 --------------GAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321 (431)
Q Consensus 256 --------------~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI 321 (431)
.......+...+....|.+|+|||+-.+..... ........+..++..+. ..++.||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~----~~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILL----EMGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHH----HHCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHH----HCCCeEE
Confidence 111223334444567899999999987653210 11233344666666543 1245677
Q ss_pred EEeCCCCCC
Q psy15151 322 AATNRVDIL 330 (431)
Q Consensus 322 ~ttn~~~~l 330 (431)
++|+..+..
T Consensus 177 ~vtH~~~~~ 185 (251)
T 2ehv_A 177 LTTEAPDPQ 185 (251)
T ss_dssp EEECCC---
T ss_pred EEECCCCCC
Confidence 888765544
No 122
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.93 E-value=7.9e-05 Score=84.32 Aligned_cols=172 Identities=11% Similarity=0.126 Sum_probs=100.7
Q ss_pred CCcccccCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc---C----CceEEeehhh
Q psy15151 175 EQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT---K----STFLKLAGPQ 247 (431)
Q Consensus 175 ~~~~~i~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~---~----~~~i~i~~~~ 247 (431)
.....++|.+..+++|.+.+...- ...+.+.|+|+.|+|||+||+.+++.. . ..++.++.+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCceeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 345679999999999998875321 133568899999999999999988751 2 2233444322
Q ss_pred -----hh-------Hhhhc---------chHHHHHHHHHHHHh--CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHH
Q psy15151 248 -----LV-------QMFIG---------DGAKLVRDAFALAKE--KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304 (431)
Q Consensus 248 -----l~-------~~~~g---------~~~~~~~~lf~~a~~--~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~ 304 (431)
.. ..+.. .....+...+..... ..+.+|+||+++.. ..
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------------~~--- 250 (1249)
T 3sfz_A 190 QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------------WV--- 250 (1249)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------------HH---
T ss_pred cCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------------HH---
Confidence 11 00000 111222222222222 23789999999863 11
Q ss_pred HHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCC-CCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCC
Q psy15151 305 LLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPH-PNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDF 383 (431)
Q Consensus 305 lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~-p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~ 383 (431)
+.. + ..+..||.||..+..... .. .....+.+++ ++.++-.++|..+..............|++.+.|+
T Consensus 251 -~~~---~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 251 -LKA---F--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp -HTT---T--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred -HHh---h--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 111 1 234568888875543211 11 2335677875 89999999998777433222223366788888888
Q ss_pred CHH
Q psy15151 384 NGA 386 (431)
Q Consensus 384 s~~ 386 (431)
.-+
T Consensus 321 PLa 323 (1249)
T 3sfz_A 321 PLV 323 (1249)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 123
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.93 E-value=4.3e-05 Score=77.04 Aligned_cols=158 Identities=23% Similarity=0.243 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCC-CcCcHHHHHHHHHHHHhhcCC-----CCCCCeEEEEEe-----C
Q psy15151 257 AKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSE-KAGDREVQRTMLELLNQLDGF-----SSTADIKVIAAT-----N 325 (431)
Q Consensus 257 ~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~-~~~~~~~~~~l~~lL~~~~~~-----~~~~~v~vI~tt-----n 325 (431)
....+.+.+.+..+ .|+++||||+++.+..+.. ..+...+|+.|+++++.-... ....++++|+|. |
T Consensus 238 ~~~~~~ai~~ae~~--~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 238 EELKQKAIDAVEQN--GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHHHHH--CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHHHHhccC--CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 34445566666333 3999999999987643211 112234778888888752110 124678899887 5
Q ss_pred CCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHH--------HHHhcC---CCC---CCCCHHHHHHH-------cCCCC
Q psy15151 326 RVDILDPALLRSGRLDRKIEFPHPNEEARARIMQ--------IHSRKM---NVS---PDVNYEELSRS-------TDDFN 384 (431)
Q Consensus 326 ~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~--------~~l~~~---~~~---~~~~~~~la~~-------~~g~s 384 (431)
..+ +-|+|+. ||+.+|.|+.++.++..+|+. .+...+ +.. .+..+..|+.. +....
T Consensus 316 ~~d-lipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~G 392 (444)
T 1g41_A 316 PSD-LIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIG 392 (444)
T ss_dssp GGG-SCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCG
T ss_pred hhh-cchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCC
Confidence 444 5589998 999999999999999999983 121111 111 11224555553 35566
Q ss_pred HHHHHHHHHHHHHHHHHh------CCCCcCHHHHHHHHHHH
Q psy15151 385 GAQCKAVCVEAGMIALRR------GAAIVTHEDFMDAIMEV 419 (431)
Q Consensus 385 ~~di~~l~~~A~~~A~~~------~~~~It~ed~~~Al~~~ 419 (431)
++.++.++..++..+..+ ....||.+++.+.+...
T Consensus 393 aR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 433 (444)
T 1g41_A 393 ARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 433 (444)
T ss_dssp GGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCcc
Confidence 677666666555443333 12358899888776543
No 124
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.89 E-value=1.5e-05 Score=78.33 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=50.8
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhh----hHhhhcc-----------hHHHHHHHHH-HHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQL----VQMFIGD-----------GAKLVRDAFA-LAK 268 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l----~~~~~g~-----------~~~~~~~lf~-~a~ 268 (431)
|++++..++|+||||+|||+||..++.. .+.++++++...- .....|. ....+..++. .++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 3557778999999999999999999875 3556777766321 1111111 1122223332 334
Q ss_pred hCCCeEEEEcccccccc
Q psy15151 269 EKAPAIIFIDELDAIGT 285 (431)
Q Consensus 269 ~~~p~vl~iDEid~l~~ 285 (431)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999999864
No 125
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.89 E-value=1.1e-05 Score=78.32 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=51.8
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---------CCceEEeehhhh---------hHhhhcc--------------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---------KSTFLKLAGPQL---------VQMFIGD-------------- 255 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---------~~~~i~i~~~~l---------~~~~~g~-------------- 255 (431)
|++++..++|+||||+|||++|..+|... +...++++...- ... +|.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~-~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA-LGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH-TTCCHHHHHHTEEEEEC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH-hCCCHHHHhccEEEEeC
Confidence 56677889999999999999999999864 455666665431 111 111
Q ss_pred --hH---HHHHHHHHHHHh-CCCeEEEEcccccccc
Q psy15151 256 --GA---KLVRDAFALAKE-KAPAIIFIDELDAIGT 285 (431)
Q Consensus 256 --~~---~~~~~lf~~a~~-~~p~vl~iDEid~l~~ 285 (431)
.. ..+..+...++. ..+.+|+||.+..+..
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 11 122334445555 6789999999999864
No 126
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.82 E-value=1.9e-05 Score=77.34 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=50.9
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---------CCceEEeehhhh------hH--hhhcc---------------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---------KSTFLKLAGPQL------VQ--MFIGD--------------- 255 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---------~~~~i~i~~~~l------~~--~~~g~--------------- 255 (431)
|++++.-++|+||||+|||++|..+|... +...++++.... .. ..+|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 56677788999999999999999999862 445666665431 10 00111
Q ss_pred -hH---HHHHHHHHHHHh--CCCeEEEEcccccccc
Q psy15151 256 -GA---KLVRDAFALAKE--KAPAIIFIDELDAIGT 285 (431)
Q Consensus 256 -~~---~~~~~lf~~a~~--~~p~vl~iDEid~l~~ 285 (431)
.. ..+..+...++. ..+.+|+||.+..+..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 11 112233345555 6789999999999864
No 127
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.79 E-value=1.8e-05 Score=69.22 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=33.3
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
+..|+|.|+||+|||++++.|+..++.+++.++...+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 356899999999999999999999998888877665543
No 128
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.76 E-value=2.7e-05 Score=74.74 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=49.6
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc-----CCceEEeehhhhhH----hhhcc-----------hHHHH-HHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT-----KSTFLKLAGPQLVQ----MFIGD-----------GAKLV-RDAFAL 266 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~-----~~~~i~i~~~~l~~----~~~g~-----------~~~~~-~~lf~~ 266 (431)
|++++ .++|+||||+|||+|+-.++... +...++++..+-.. .-+|- ....+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 46666 68999999999999988776642 56677777643211 11111 11111 112222
Q ss_pred ---HHhCCCeEEEEccccccccC
Q psy15151 267 ---AKEKAPAIIFIDELDAIGTK 286 (431)
Q Consensus 267 ---a~~~~p~vl~iDEid~l~~~ 286 (431)
++...|.+|+||=|..+.++
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 35567999999999999753
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.75 E-value=2.9e-05 Score=77.55 Aligned_cols=118 Identities=17% Similarity=0.236 Sum_probs=62.7
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---------CCceEEeehhhhh--------Hhhhcch--------------
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---------KSTFLKLAGPQLV--------QMFIGDG-------------- 256 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---------~~~~i~i~~~~l~--------~~~~g~~-------------- 256 (431)
|++++.-++|+||||+|||+|++.++-.. +...++++..... ...+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 67777889999999999999999776432 2346666653310 0111110
Q ss_pred -----HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 257 -----AKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 257 -----~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
...+..+...+....|.+|+||++-.+....... .+.-.+-++.+.+++..+..+....++.||+++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 1112233344455779999999998876532211 01111223333333333322222345667777654
No 130
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.74 E-value=6.5e-05 Score=68.29 Aligned_cols=28 Identities=36% Similarity=0.478 Sum_probs=24.6
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
|++++.-+.|.||+|+|||+|++.++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4557778999999999999999999984
No 131
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.73 E-value=0.00032 Score=72.94 Aligned_cols=165 Identities=12% Similarity=0.115 Sum_probs=92.8
Q ss_pred cCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHH----HcCCce---EEeehhh------
Q psy15151 181 GGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAA----QTKSTF---LKLAGPQ------ 247 (431)
Q Consensus 181 ~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~----~~~~~~---i~i~~~~------ 247 (431)
+|.+..++.+.+.+...- -...+.+.|+|+.|+|||+||+.+++ .....| +.++.+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC----------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT----------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhccc----------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 499999999998874310 01346688999999999999999996 333222 2233222
Q ss_pred --hhHhh---hcch-------------HHHHHHHHHHHHhC-CCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHh
Q psy15151 248 --LVQMF---IGDG-------------AKLVRDAFALAKEK-APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 308 (431)
Q Consensus 248 --l~~~~---~g~~-------------~~~~~~lf~~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~ 308 (431)
+.... ++.. ...+...+...-.. .+.+|+||+++.. ..+ .+...
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~----------------~~~-~~~~~ 263 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE----------------ETI-RWAQE 263 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH----------------HHH-HHHHH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc----------------hhh-ccccc
Confidence 11111 1110 11122223333334 3789999999874 111 12111
Q ss_pred hcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCC----HHHHHHHcCCCC
Q psy15151 309 LDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVN----YEELSRSTDDFN 384 (431)
Q Consensus 309 ~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~----~~~la~~~~g~s 384 (431)
.+..||.||...... . ..+.....+.+++++.++-.++|..+...... ..+ ...|+..+.|..
T Consensus 264 -------~gs~ilvTTR~~~v~-~---~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 -------LRLRCLVTTRDVEIS-N---AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp -------TTCEEEEEESBGGGG-G---GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCH
T ss_pred -------CCCEEEEEcCCHHHH-H---HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCCh
Confidence 345577777643211 1 11123457899999999999999887432211 111 345667777665
Q ss_pred H
Q psy15151 385 G 385 (431)
Q Consensus 385 ~ 385 (431)
-
T Consensus 331 L 331 (549)
T 2a5y_B 331 A 331 (549)
T ss_dssp H
T ss_pred H
Confidence 3
No 132
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.69 E-value=1.2e-05 Score=71.51 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=18.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
.-++++||+|+|||+++..++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999998666653
No 133
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.69 E-value=3e-05 Score=90.46 Aligned_cols=126 Identities=18% Similarity=0.250 Sum_probs=77.4
Q ss_pred hHHHHhc---CCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhhHhh----hc--------chHHHHHH
Q psy15151 201 KEKFVNL---GIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLVQMF----IG--------DGAKLVRD 262 (431)
Q Consensus 201 ~~~~~~~---g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~~~~----~g--------~~~~~~~~ 262 (431)
+++..-+ |++++..++|+|+||+|||+||..+|... +.++++++..+..... +| ..+..+..
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~ 797 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 797 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHH
Confidence 4444555 58888999999999999999999999864 4468888776543332 23 11122444
Q ss_pred HHHHHHh----CCCeEEEEcccccccc-CCCCC--CCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 263 AFALAKE----KAPAIIFIDELDAIGT-KRFDS--EKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 263 lf~~a~~----~~p~vl~iDEid~l~~-~r~~~--~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
+++.++. ..|++|+||.++.+.. ...++ ++....-..+.+.+++..+..+....++.||+++..
T Consensus 798 i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 4544443 6789999999999875 21100 111110112335555555554445567777777653
No 134
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.68 E-value=0.00016 Score=66.41 Aligned_cols=38 Identities=34% Similarity=0.406 Sum_probs=28.9
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEeeh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAG 245 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~ 245 (431)
|++++..++|+||||+|||+++..++.. .+...++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5667788999999999999999888763 3445555543
No 135
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.68 E-value=5.2e-05 Score=74.35 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=26.7
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
.|++++.-+.|+||||+|||+|++.++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467777889999999999999999999875
No 136
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.66 E-value=2.2e-05 Score=70.37 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=33.1
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhc
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIG 254 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g 254 (431)
.++..++|.||||+|||++++.+|..++.+++.. .++.....|
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~--d~~~~~~~g 65 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL--DWYIEERFH 65 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH--HHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc--hHHHHHHhC
Confidence 4567899999999999999999999999887654 344443333
No 137
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.62 E-value=0.00059 Score=70.63 Aligned_cols=75 Identities=16% Similarity=0.310 Sum_probs=57.7
Q ss_pred CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC--CCChhhhcCCCcceEEEcCCC
Q psy15151 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD--ILDPALLRSGRLDRKIEFPHP 349 (431)
Q Consensus 272 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~--~l~~~l~r~gR~~~~i~~~~p 349 (431)
+-+|+|||++.++... ..++...+.++.... ...++.+|++|.+|. .++..++. -|...|.|...
T Consensus 344 ~ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~G----Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 344 TIVVVVDEFADMMMIV-------GKKVEELIARIAQKA----RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEEESCCTTHHHHT-------CHHHHHHHHHHHHHC----TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred cEEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHH----hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 3689999999885432 235556666666653 456889999999988 78888887 78889999999
Q ss_pred CHHHHHHHHH
Q psy15151 350 NEEARARIMQ 359 (431)
Q Consensus 350 ~~~~r~~Il~ 359 (431)
+..+...|+.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9988888874
No 138
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.61 E-value=5.1e-05 Score=71.34 Aligned_cols=72 Identities=25% Similarity=0.438 Sum_probs=43.1
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHc----CCceEEeehh-hhh---------HhhhcchHHHHHHHHHHHHhCCCeEE
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAGP-QLV---------QMFIGDGAKLVRDAFALAKEKAPAII 275 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~~-~l~---------~~~~g~~~~~~~~lf~~a~~~~p~vl 275 (431)
.++..++|.||+|+||||++++++... ...++....+ +++ ...+|.....++..+..+-...|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 366678999999999999999999853 2222221110 000 00111111223455555655679999
Q ss_pred EEcccc
Q psy15151 276 FIDELD 281 (431)
Q Consensus 276 ~iDEid 281 (431)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999983
No 139
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.60 E-value=8.4e-05 Score=75.58 Aligned_cols=49 Identities=22% Similarity=0.378 Sum_probs=33.2
Q ss_pred CCCccccc-CchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 174 TEQYSDIG-GLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 174 ~~~~~~i~-G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
..+|+++- +|..++..+...+.. ....++|.||||||||+++.+++..+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45666663 455555555444432 22479999999999999999998864
No 140
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.58 E-value=3.3e-05 Score=68.07 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=32.3
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIG 254 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g 254 (431)
+..|+|.||||+|||++++.+|..++.+++.. ..+.....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~--d~~~~~~~g 45 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS--DKEIEKRTG 45 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH--HHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 46799999999999999999999999887654 334444333
No 141
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.57 E-value=0.00015 Score=66.43 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=42.6
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhh-------hhHhhhcch-----HHHHHHHHHHHHh----CCC
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQ-------LVQMFIGDG-----AKLVRDAFALAKE----KAP 272 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~-------l~~~~~g~~-----~~~~~~lf~~a~~----~~p 272 (431)
+.-++++||+|+|||+++..++... +..++.+.... +.+. +|.. ......+++.+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3457788999999999998887753 44444442211 1111 1210 0112345555554 357
Q ss_pred eEEEEcccccc
Q psy15151 273 AIIFIDELDAI 283 (431)
Q Consensus 273 ~vl~iDEid~l 283 (431)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999987
No 142
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.57 E-value=0.00021 Score=66.61 Aligned_cols=38 Identities=26% Similarity=0.471 Sum_probs=32.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL 248 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l 248 (431)
.|..++|.||||+|||++++.++..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 45679999999999999999999998876777777654
No 143
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.57 E-value=0.0016 Score=59.46 Aligned_cols=161 Identities=19% Similarity=0.150 Sum_probs=83.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHH---cCCceEEeehh--------hhhHhhhc----------c--hHHHHHHHHHHHHh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGP--------QLVQMFIG----------D--GAKLVRDAFALAKE 269 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~--------~l~~~~~g----------~--~~~~~~~lf~~a~~ 269 (431)
..+++.|+||||||+++-.+|.. .|..++.++.. .+....-. . .+..+..++ .
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~ 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----K 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----H
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----h
Confidence 45899999999999999988875 35555444331 22221100 0 111222222 2
Q ss_pred CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC------------------CCCCC
Q psy15151 270 KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR------------------VDILD 331 (431)
Q Consensus 270 ~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~------------------~~~l~ 331 (431)
..|.++++||+-..-... ..+......+..++. .++-++.|+|. .+.++
T Consensus 83 ~~pdlvIVDElG~~~~~~-----~r~~~~~qDV~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vp 149 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPG-----SRHTKRWQDIQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLP 149 (228)
T ss_dssp HCCSEEEESCTTCBCCTT-----CSSSBHHHHHHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBC
T ss_pred cCCCEEEEeCCCCCCccc-----chhHHHHHHHHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCc
Confidence 358899999987641111 111111222222222 34457888883 24466
Q ss_pred hhhhcCCCcceEEEcCCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy15151 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIA 399 (431)
Q Consensus 332 ~~l~r~gR~~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~~~~la~~~~g~s~~di~~l~~~A~~~A 399 (431)
..++. +.|.+..+..|..+-+. ....+.-..++..-..+.. -|+...+.++-.-|...+
T Consensus 150 d~~~~--~a~~v~lvD~~p~~l~~----rl~~g~vy~~~~~~~a~~~---~f~~~nl~~lrelal~~~ 208 (228)
T 2r8r_A 150 DWVLQ--EAFDLVLIDLPPRELLE----RLRDGKVYVPEQARAAIDA---FFTQTNLTALREMAMQTA 208 (228)
T ss_dssp HHHHH--TCSEEEEBCCCHHHHHH----HHHTTCCCCTTCCHHHHHH---HCCHHHHHHHHHHHHHHH
T ss_pred cHHHh--hCCeEEEecCCHHHHHH----HHHCCCccChhHHHHHHHh---hhchhhHHHHHHHHHHHH
Confidence 67777 77777777777655222 2222222222322233332 267777777655455544
No 144
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.56 E-value=5.3e-05 Score=73.25 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.7
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
|++++.-++|+||||+|||++|..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5667778999999999999999999875
No 145
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.56 E-value=3e-05 Score=68.59 Aligned_cols=35 Identities=34% Similarity=0.514 Sum_probs=29.7
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
+..+..|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 34566799999999999999999999998776654
No 146
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.55 E-value=0.00014 Score=71.40 Aligned_cols=98 Identities=23% Similarity=0.275 Sum_probs=57.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc----CCceEEeeh-hhhh---------HhhhcchHHHHHHHHHHHHhCCCeEEE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAG-PQLV---------QMFIGDGAKLVRDAFALAKEKAPAIIF 276 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~-~~l~---------~~~~g~~~~~~~~lf~~a~~~~p~vl~ 276 (431)
+...++|.||+|+||||+.++++... +..++.+.- .++. ...++.....+...+..+-...|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 44578999999999999999998853 233333211 1110 001111112234466777778899999
Q ss_pred EccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC
Q psy15151 277 IDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329 (431)
Q Consensus 277 iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~ 329 (431)
+||+- +.+....+.++.. .+..||+|+...+.
T Consensus 202 lDEp~-------------d~e~~~~~~~~~~--------~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 202 VGEMR-------------DLETIRLALTAAE--------TGHLVFGTLHTTSA 233 (356)
T ss_dssp ESCCC-------------SHHHHHHHHHHHH--------TTCEEEEEESCSSH
T ss_pred cCCCC-------------CHHHHHHHHHHHh--------cCCEEEEEEccChH
Confidence 99984 2344344444322 13347888876554
No 147
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.50 E-value=8.2e-05 Score=70.36 Aligned_cols=28 Identities=36% Similarity=0.394 Sum_probs=24.2
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
|++++..++|+||+|+|||+|++.++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4557778999999999999999999864
No 148
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.46 E-value=6.8e-05 Score=65.81 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=28.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
.+..|+|+|+||+|||++++.++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 456799999999999999999999998776644
No 149
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.45 E-value=0.00024 Score=61.58 Aligned_cols=37 Identities=30% Similarity=0.539 Sum_probs=29.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
+..+.|.||+|+||||+++.+|..++.+++ +...+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~~ 40 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEIE 40 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHHH
Confidence 457999999999999999999999887554 4444433
No 150
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.45 E-value=0.00032 Score=62.47 Aligned_cols=24 Identities=42% Similarity=0.700 Sum_probs=21.3
Q ss_pred CCceeeCCCCCchHHHHHHHHHHc
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~ 236 (431)
..+.|.||+|+||||+++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 357899999999999999999864
No 151
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.43 E-value=6.1e-05 Score=66.60 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=32.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL 248 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l 248 (431)
+.++..+.|.||||+||||+++.++...+...+.++..++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3456679999999999999999999987777777776554
No 152
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.40 E-value=0.00012 Score=63.95 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.0
Q ss_pred CCCCCceeeCCCCCchHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARA 231 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~laka 231 (431)
+++.-+.|.||+|+|||||+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3556789999999999999994
No 153
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.39 E-value=0.00057 Score=70.06 Aligned_cols=75 Identities=16% Similarity=0.323 Sum_probs=52.6
Q ss_pred eEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC--CCChhhhcCCCcceEEEcCCCC
Q psy15151 273 AIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD--ILDPALLRSGRLDRKIEFPHPN 350 (431)
Q Consensus 273 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~--~l~~~l~r~gR~~~~i~~~~p~ 350 (431)
-+|+|||+..+.... ..++...+.++.... ...++.+|++|.++. .++..++. -+...|.|...+
T Consensus 299 ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~g----Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s 365 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-------GKKVEELIARLAQKA----RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 365 (512)
T ss_dssp EEEEEETHHHHHHHH-------HHHHHHHHHHHHHHC----GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSS
T ss_pred EEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHh----hhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCC
Confidence 389999998774311 123334444444432 234788999999987 58877777 788899999999
Q ss_pred HHHHHHHHHH
Q psy15151 351 EEARARIMQI 360 (431)
Q Consensus 351 ~~~r~~Il~~ 360 (431)
..+...|+..
T Consensus 366 ~~dsr~ilg~ 375 (512)
T 2ius_A 366 KIDSRTILDQ 375 (512)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHhcCC
Confidence 9998888753
No 154
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.39 E-value=7.5e-05 Score=66.02 Aligned_cols=33 Identities=36% Similarity=0.516 Sum_probs=27.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH-cCCceEEe
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ-TKSTFLKL 243 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~-~~~~~i~i 243 (431)
.+..++|+|+||||||++++.++.. ++.+++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3457999999999999999999998 67665543
No 155
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.39 E-value=9.4e-05 Score=63.96 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=27.6
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
.|+|.||||+||||+++.|+..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998876655
No 156
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.37 E-value=9.6e-05 Score=65.01 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=30.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhc
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIG 254 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g 254 (431)
..|+|.|+||+|||++|+.|+..++.+++. ...+.....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id--~D~~~~~~~g 42 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD--TDVAIEQRTG 42 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHHHHHHS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe--CchHHHHHcC
Confidence 358999999999999999999999988765 4444433333
No 157
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.35 E-value=0.00018 Score=68.57 Aligned_cols=38 Identities=32% Similarity=0.520 Sum_probs=30.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL 248 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l 248 (431)
.|..++|.||||+||||+++.++..++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 34668999999999999999999988656677776443
No 158
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.35 E-value=0.00034 Score=70.98 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=30.8
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHHH----cCCceEEeeh
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQ----TKSTFLKLAG 245 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~~----~~~~~i~i~~ 245 (431)
.|++++.-++|.|+||+|||+|+..+|.. .+.+++.++.
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 36778888999999999999999999874 2446666543
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.34 E-value=9.7e-05 Score=64.52 Aligned_cols=36 Identities=36% Similarity=0.535 Sum_probs=29.2
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
..++|.||||+|||++++.||..++.+++. ...+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d--~d~~~~ 40 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLD--SDFLIE 40 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEc--ccHHHH
Confidence 368999999999999999999999977654 444433
No 160
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.33 E-value=0.00035 Score=65.38 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=31.2
Q ss_pred CCCceeeCCCCCchHHHHHHHHHH---cCCceEEeehhhhh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGPQLV 249 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~~l~ 249 (431)
+.-|+|.|+||+|||++|+.++.. .+.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 456899999999999999999997 77777766665544
No 161
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.31 E-value=0.0017 Score=57.98 Aligned_cols=116 Identities=18% Similarity=0.215 Sum_probs=67.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHH---cCCceEEe---eh------hhhhHhhhc-------------c-----hHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ---TKSTFLKL---AG------PQLVQMFIG-------------D-----GAKLVRD 262 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~---~~~~~i~i---~~------~~l~~~~~g-------------~-----~~~~~~~ 262 (431)
..+++|+++|.|||++|-.+|-. .|..+..+ .+ ..++..+ + . .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHHH
Confidence 57999999999999999988764 34444444 22 1233333 1 0 0122333
Q ss_pred HHHHHHh----CCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCC
Q psy15151 263 AFALAKE----KAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSG 338 (431)
Q Consensus 263 lf~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~g 338 (431)
.+..++. ..+.+|+|||+-....-+. -+. ..+++++.. ...+.-||+|+|.+ +++++.
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~-----l~~---~ev~~~l~~-----Rp~~~~vIlTGr~a---p~~l~e-- 169 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDY-----LPL---EEVISALNA-----RPGHQTVIITGRGC---HRDILD-- 169 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTS-----SCH---HHHHHHHHT-----SCTTCEEEEECSSC---CHHHHH--
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCC-----CCH---HHHHHHHHh-----CcCCCEEEEECCCC---cHHHHH--
Confidence 4444433 5689999999954321110 011 235555543 34567789999864 567776
Q ss_pred CcceEEEcC
Q psy15151 339 RLDRKIEFP 347 (431)
Q Consensus 339 R~~~~i~~~ 347 (431)
.-|.+-++.
T Consensus 170 ~AD~VTem~ 178 (196)
T 1g5t_A 170 LADTVSELR 178 (196)
T ss_dssp HCSEEEECC
T ss_pred hCcceeeec
Confidence 666666654
No 162
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.31 E-value=0.0007 Score=62.09 Aligned_cols=38 Identities=29% Similarity=0.255 Sum_probs=28.6
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH----cCCceEEeeh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ----TKSTFLKLAG 245 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~----~~~~~i~i~~ 245 (431)
|++++.-++|+|+||+|||++|-.+|.. .+.+.+.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4567788999999999999999887643 3556655543
No 163
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.29 E-value=0.0012 Score=62.18 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.5
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||||++.++..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 346677899999999999999999984
No 164
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.26 E-value=0.00016 Score=67.56 Aligned_cols=33 Identities=33% Similarity=0.368 Sum_probs=29.2
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehh
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP 246 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~ 246 (431)
.++|.||||+|||++|+.||..++.+++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999888877653
No 165
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.25 E-value=0.00016 Score=64.72 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=27.5
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
+..|+|.|+||+|||++|+.|+..++.+++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34689999999999999999999998776544
No 166
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.24 E-value=0.00014 Score=62.91 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=31.6
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhhhc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIG 254 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~~g 254 (431)
...++|.|+||||||++++.||..++.+++.. ..+.....|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~--D~~~~~~~g 47 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT--DMIISERVG 47 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH--HHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHhC
Confidence 35799999999999999999999999887654 344443333
No 167
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.22 E-value=0.00021 Score=63.92 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=27.7
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
+..|+|.|++|+||||+++.|+..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45799999999999999999999998776553
No 168
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.22 E-value=0.00042 Score=80.06 Aligned_cols=118 Identities=22% Similarity=0.261 Sum_probs=75.2
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHH---HcCCceEEeehhh-----hhHh-----------hhcchHHHHHHHHHHHHh
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAA---QTKSTFLKLAGPQ-----LVQM-----------FIGDGAKLVRDAFALAKE 269 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~---~~~~~~i~i~~~~-----l~~~-----------~~g~~~~~~~~lf~~a~~ 269 (431)
++.++.+.+|||+|+|||+||-.++. ..+.....++... +..+ .....+..+..+...++.
T Consensus 1428 ~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s 1507 (1706)
T 3cmw_A 1428 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1507 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHc
Confidence 34555699999999999999987764 3466666666532 2221 223346667777788899
Q ss_pred CCCeEEEEccccccccCCCCCCCcCc--HHHH-HHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 270 KAPAIIFIDELDAIGTKRFDSEKAGD--REVQ-RTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 270 ~~p~vl~iDEid~l~~~r~~~~~~~~--~~~~-~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
.++++|++|-+..|.++..-.+..++ ...+ +.+.+.|..+.+.-...++.+|++...
T Consensus 1508 ~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~ 1567 (1706)
T 3cmw_A 1508 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1567 (1706)
T ss_dssp TCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECB
T ss_pred CCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeecc
Confidence 99999999999999887533322221 1122 445455655554444566777777554
No 169
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.21 E-value=0.00011 Score=64.96 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=28.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
.+..|+|.|+||+||||+++.|+..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 446799999999999999999999998776544
No 170
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.20 E-value=0.00027 Score=69.39 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=35.1
Q ss_pred HHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 264 FALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 264 f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
+..|-...|.+|++||--.- -++..+..+.++|..+.. ..+..||++|...+
T Consensus 174 IArAL~~~P~lLLlDEPTs~----------LD~~~~~~i~~lL~~l~~---~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSA----------LDPATTRSILELLKDINR---RLGLTILLITHEMD 225 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTT----------SCHHHHHHHHHHHHHHHH---HSCCEEEEEESCHH
T ss_pred HHHHHhcCCCEEEEECCCcc----------CCHHHHHHHHHHHHHHHH---hCCCEEEEEecCHH
Confidence 34444567999999997553 277777888888877631 23456788887543
No 171
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.20 E-value=0.00016 Score=62.42 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=25.0
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
-|+|.||||+|||++++.+ ...+.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888776554
No 172
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.19 E-value=0.00017 Score=65.44 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=28.0
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
++..|+|.|+||+||||+++.||..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 346789999999999999999999998765543
No 173
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.18 E-value=0.00019 Score=62.19 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=26.6
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
..|+|.|+||+|||++++.|+..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 458999999999999999999999877654
No 174
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.18 E-value=0.00015 Score=64.04 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=28.9
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
+..|+|.|+||+||||+|+.++..++.+++ +..+++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 356899999999999999999999887654 444443
No 175
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.17 E-value=0.00015 Score=63.65 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=28.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
+..++|.|+||+||||+++.++..++.+++ +..++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i--~~d~~~ 39 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL--STGDIL 39 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE--CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHH
Confidence 346899999999999999999999886554 444443
No 176
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.16 E-value=0.00015 Score=66.16 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=27.5
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
.+..|+|.|+||+|||++++.|+..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 446799999999999999999999988765543
No 177
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.16 E-value=0.00034 Score=73.15 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=24.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHH---cCCceEEe
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ---TKSTFLKL 243 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~---~~~~~i~i 243 (431)
..++|.||||||||+++++++.. .+..++.+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 57899999999999999999874 34555544
No 178
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.16 E-value=0.0002 Score=67.36 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.9
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||||++.++..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 36677889999999999999999973
No 179
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.15 E-value=0.00027 Score=66.82 Aligned_cols=54 Identities=26% Similarity=0.322 Sum_probs=35.7
Q ss_pred HHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 264 FALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 264 f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
+..|-...|.+|++||--.- -++.....+.+++..+.. ..+..||++|...+.+
T Consensus 154 iAraL~~~P~lLlLDEPts~----------LD~~~~~~i~~~l~~l~~---~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAG----------LDPMGVSEIMKLLVEMQK---ELGITIIIATHDIDIV 207 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTT----------CCHHHHHHHHHHHHHHHH---HHCCEEEEEESCCSSG
T ss_pred HHHHHHcCCCEEEEECcccc----------CCHHHHHHHHHHHHHHHh---hCCCEEEEEecCHHHH
Confidence 34445567999999996542 266777778888776531 1145688888876554
No 180
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.14 E-value=0.00022 Score=70.41 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.9
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++.-+.|.||+|+|||||.|.++.-
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 45667889999999999999999983
No 181
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.12 E-value=0.00056 Score=63.58 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.0
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||||++.++..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46677899999999999999999884
No 182
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.12 E-value=0.00049 Score=64.35 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||||++.++..
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 346677899999999999999999984
No 183
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.11 E-value=0.00021 Score=70.59 Aligned_cols=74 Identities=24% Similarity=0.407 Sum_probs=44.8
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc----CCceEEeehh-hh--------h-HhhhcchHHHHHHHHHHHHhCCCe
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAGP-QL--------V-QMFIGDGAKLVRDAFALAKEKAPA 273 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~~-~l--------~-~~~~g~~~~~~~~lf~~a~~~~p~ 273 (431)
.+.++..++|.||+|+||||++++++... ...++.+..+ ++ + +..+|.....+...+..+-...|.
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd 211 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 211 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCS
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcC
Confidence 34466779999999999999999999853 2333332211 10 0 000111112234455555567899
Q ss_pred EEEEcccc
Q psy15151 274 IIFIDELD 281 (431)
Q Consensus 274 vl~iDEid 281 (431)
+|++||+-
T Consensus 212 ~illdE~~ 219 (372)
T 2ewv_A 212 VIFVGEMR 219 (372)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999984
No 184
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.10 E-value=0.00018 Score=63.29 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=23.0
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~ 237 (431)
..|+|.||||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999876
No 185
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.10 E-value=0.00022 Score=62.46 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=23.2
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceE
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFL 241 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i 241 (431)
+..|+|.|+||+|||++++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 356899999999999999999999998877
No 186
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.10 E-value=0.00024 Score=64.22 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=26.0
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
.|+|.||||+||||+|+.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999988766554
No 187
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.09 E-value=0.00025 Score=61.77 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=26.2
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
+..++|.||+|+|||++++.++..++..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4568999999999999999999988765543
No 188
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.08 E-value=0.00025 Score=64.02 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=26.0
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
.|+|.||||+||||+|+.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998776544
No 189
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.08 E-value=0.0012 Score=63.54 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=29.7
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEee
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLA 244 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~ 244 (431)
-|+.++.-++|.|+||+|||++|..+|... +.+.+.++
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 367788889999999999999999998652 34555554
No 190
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.08 E-value=0.0017 Score=59.84 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=27.1
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeeh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG 245 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~ 245 (431)
..++++||+|+|||.++-+++...+...+.+..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 358999999999999999999887766665543
No 191
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.08 E-value=0.00033 Score=62.62 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=28.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQ 247 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~ 247 (431)
++..+.|.||+|+||||+++.++..++..+ ++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~ 62 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADA 62 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Ecccc
Confidence 456789999999999999999999887544 44443
No 192
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.08 E-value=0.00018 Score=65.27 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=27.5
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
+..|+|.|+||+||||+++.||..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35689999999999999999999998766544
No 193
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.08 E-value=0.00026 Score=61.01 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=26.3
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
.|+|.|+||+|||++++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 378999999999999999999999776643
No 194
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.07 E-value=0.00026 Score=64.53 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=31.3
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~ 251 (431)
..++-|+|.||||+||+|.|+.|++.++.+ .++..+++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHHH
Confidence 355678899999999999999999998755 4555555543
No 195
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.07 E-value=0.00021 Score=63.36 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=29.2
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
+..|+|.|+||+|||++++.|+..++.+++ +...+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~~ 48 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELLR 48 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHHH
Confidence 457999999999999999999999886554 4444433
No 196
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.07 E-value=0.00087 Score=67.77 Aligned_cols=39 Identities=18% Similarity=0.079 Sum_probs=30.8
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHHH----cCCceEEeeh
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQ----TKSTFLKLAG 245 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~~----~~~~~i~i~~ 245 (431)
-|++++.-++|.|+||+|||++|..+|.. .+.+++.++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 36778888999999999999999998874 2456666544
No 197
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.07 E-value=0.00043 Score=60.19 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=25.8
Q ss_pred CCceeeCCCCCchHHHHHHHHH-HcCCceEEeehhhh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAA-QTKSTFLKLAGPQL 248 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~-~~~~~~i~i~~~~l 248 (431)
.-|+|.||||+||||+|+.++. ..+ +..++...+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~ 37 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDY 37 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHH
Confidence 4589999999999999999998 444 444444433
No 198
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.06 E-value=0.00025 Score=65.73 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=27.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
++..|+|.||||+||||+|+.|+..++.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 456799999999999999999999987665543
No 199
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.06 E-value=0.0002 Score=65.06 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=27.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
.+..|+|.||||+||||+++.||..++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34679999999999999999999999865543
No 200
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.06 E-value=0.00029 Score=64.64 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=27.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
+..|+|.|+||+|||++++.||..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35699999999999999999999998765543
No 201
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.05 E-value=0.00014 Score=71.06 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=26.5
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
.+++|.||||+|||++++++|..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 358999999999999999999998877744
No 202
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.04 E-value=0.00025 Score=62.39 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=27.0
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
+..|+|.|+||+|||++++.++..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 35689999999999999999999988665543
No 203
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.02 E-value=0.00027 Score=63.07 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=26.5
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
..|+|.|+||+|||++++.|+..++.+++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 4588999999999999999999988755544
No 204
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.02 E-value=0.00043 Score=67.88 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++.-+.|.||+|+|||||.+.++..
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcC
Confidence 45667889999999999999999983
No 205
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.01 E-value=0.00046 Score=67.74 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=22.8
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++.-+.|.||+|+|||||.+.+|.-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 45667889999999999999999983
No 206
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.01 E-value=0.00047 Score=61.63 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=29.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL 248 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l 248 (431)
++..+.|.||+|+||||+++.++..+ |...+.++...+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 55678899999999999999999987 444446665444
No 207
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.99 E-value=0.0017 Score=65.30 Aligned_cols=195 Identities=13% Similarity=0.085 Sum_probs=101.0
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh----------hHh----------hhcchHHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL----------VQM----------FIGDGAKLVRDAFALA 267 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l----------~~~----------~~g~~~~~~~~lf~~a 267 (431)
+|..+++.|++|+||||++..+|..+ +..+..+++..+ ... ....+...+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998753 444544444211 000 0112334456677778
Q ss_pred HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC-CC--hhhhcCCCcceEE
Q psy15151 268 KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI-LD--PALLRSGRLDRKI 344 (431)
Q Consensus 268 ~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~-l~--~~l~r~gR~~~~i 344 (431)
+...+.+++||....+. .+......+..+.... ....+++|.-+..... ++ ..+.....++ -+
T Consensus 179 ~~~~~DvVIIDTaGrl~---------~d~~lm~el~~i~~~~----~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~-gV 244 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK---------EDKALIEEMKQISNVI----HPHEVILVIDGTIGQQAYNQALAFKEATPIG-SI 244 (443)
T ss_dssp HHTTCSEEEEECCCCSS---------CCHHHHHHHHHHHHHH----CCSEEEEEEEGGGGGGHHHHHHHHHHSCTTE-EE
T ss_pred HhCCCCEEEEECCCccc---------chHHHHHHHHHHHHhh----cCceEEEEEeCCCchhHHHHHHHHHhhCCCe-EE
Confidence 77778899999886541 1233333344443332 1233444444332111 11 1222211222 24
Q ss_pred EcCCCCHHHHHHHHHHHHh--cCCCC-----------CCCCHHHHHHHcCCCCHHHHHHHHHHHHH----------HHHH
Q psy15151 345 EFPHPNEEARARIMQIHSR--KMNVS-----------PDVNYEELSRSTDDFNGAQCKAVCVEAGM----------IALR 401 (431)
Q Consensus 345 ~~~~p~~~~r~~Il~~~l~--~~~~~-----------~~~~~~~la~~~~g~s~~di~~l~~~A~~----------~A~~ 401 (431)
.+...|...+...+..... +.++. ...+.+.++...-|. +|+..++..|.. .+.+
T Consensus 245 IlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~~~k 322 (443)
T 3dm5_A 245 IVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGL--GDIQGLLEKFKELEKEVEIKEEDIER 322 (443)
T ss_dssp EEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTT--TCHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCC--CcHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4444444333222221111 11111 124567788777654 467777654321 2222
Q ss_pred hCCCCcCHHHHHHHHHHHHH
Q psy15151 402 RGAAIVTHEDFMDAIMEVQA 421 (431)
Q Consensus 402 ~~~~~It~ed~~~Al~~~~~ 421 (431)
-.....|.+||.+-++.++.
T Consensus 323 ~~~~~f~l~d~~~q~~~~~k 342 (443)
T 3dm5_A 323 FLRGKFTLKDMYAQLEAMRK 342 (443)
T ss_dssp HHTTCCCHHHHHHHHHHHHT
T ss_pred HhhCCcCHHHHHHHHHHHHh
Confidence 12345899999988887763
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.99 E-value=0.0005 Score=60.11 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=31.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL 248 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l 248 (431)
++..+.|.|++|+||||+++.++..+ +.+++.++...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 34568899999999999999999987 888888876443
No 209
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.98 E-value=0.00039 Score=68.09 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=22.8
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++.-+.|.||+|+|||||.+.+|.-
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35567889999999999999999984
No 210
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.98 E-value=0.00044 Score=67.94 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.8
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++.-+.|.||+|+|||||.+.+|.-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcC
Confidence 45667889999999999999999984
No 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.98 E-value=0.0037 Score=68.93 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=35.2
Q ss_pred cCchHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 181 GGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 181 ~G~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+|.+..++.|.+.+... ...+-+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999998877521 12467899999999999999999863
No 212
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.95 E-value=0.00045 Score=62.43 Aligned_cols=34 Identities=24% Similarity=0.505 Sum_probs=27.6
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
++|.||||+||+|.|+.||+..+.+. ++..+++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 78899999999999999999988654 55555543
No 213
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.93 E-value=0.0026 Score=65.68 Aligned_cols=110 Identities=20% Similarity=0.214 Sum_probs=65.2
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhh----hhHhh--hc----------------------ch
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQ----LVQMF--IG----------------------DG 256 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~----l~~~~--~g----------------------~~ 256 (431)
++.++..++|.||+|+|||+|++.++... +...+++...+ +.... +| ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45677889999999999999999998753 33444443211 11000 00 12
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 257 AKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 257 ~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
....+.++..+....|.+|+||=+..+-..- ........+..++..+.. .++.+|+++...
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~------~~~~~~~~i~~ll~~l~~----~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGV------SNNAFRQFVIGVTGYAKQ----EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS------CHHHHHHHHHHHHHHHHH----TTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhC------ChHHHHHHHHHHHHHHHh----CCCEEEEEECcc
Confidence 2344556677777889999999655552210 112255566666666532 245566666544
No 214
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.93 E-value=0.00089 Score=64.25 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++++..+.|.||+|+|||||++.++..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 357778999999999999999999884
No 215
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.92 E-value=0.00045 Score=60.68 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=27.1
Q ss_pred CceeeCCCCCchHHHHHHHHHHcC---CceEEeehhhh
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTK---STFLKLAGPQL 248 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~---~~~i~i~~~~l 248 (431)
.|+|.|+||+||||+++.|+..++ .++..++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 478999999999999999999865 23555554443
No 216
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.92 E-value=0.00086 Score=65.09 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=46.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehhh-hh----Hh---hhcchHHHHHHHHHHHHhCCCeEEEEccc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGPQ-LV----QM---FIGDGAKLVRDAFALAKEKAPAIIFIDEL 280 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~~-l~----~~---~~g~~~~~~~~lf~~a~~~~p~vl~iDEi 280 (431)
++..++|.||+|+|||||+++++..... -.+.++... +. .. ++.......+..+..+....|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 5578999999999999999999986432 234443321 10 00 11001223445666777788999999997
Q ss_pred cc
Q psy15151 281 DA 282 (431)
Q Consensus 281 d~ 282 (431)
-.
T Consensus 250 ~~ 251 (330)
T 2pt7_A 250 RS 251 (330)
T ss_dssp CS
T ss_pred Ch
Confidence 54
No 217
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.91 E-value=0.002 Score=70.53 Aligned_cols=109 Identities=12% Similarity=0.115 Sum_probs=56.3
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH-----cCCc--------------eEEeehhhhhHhhhcchHHHHHHHHHHHH-
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ-----TKST--------------FLKLAGPQLVQMFIGDGAKLVRDAFALAK- 268 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~-----~~~~--------------~i~i~~~~l~~~~~g~~~~~~~~lf~~a~- 268 (431)
+..+..++|.||.|+|||++.|.++.- .+.. +-.+...+..............++...++
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~ 749 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK 749 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh
Confidence 345567899999999999999998742 2211 11112122211111111222222222222
Q ss_pred hCCCeEEEEccccccccCCCCCCCcCcHHHHHHHH-HHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 269 EKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTML-ELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 269 ~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~-~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
...|++|++||.-.- -++.....+. .++..+.. ..+..+|++|...+..
T Consensus 750 a~~p~LlLLDEP~~G----------lD~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 750 ATSQSLVILDELGRG----------TSTHDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVC 799 (918)
T ss_dssp CCTTCEEEEESTTTT----------SCHHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGG
T ss_pred ccCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHH
Confidence 467899999998652 2443333333 55555421 1345688888875543
No 218
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.90 E-value=0.00046 Score=66.60 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=29.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeeh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG 245 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~ 245 (431)
..++|.||+|+|||++++.||..++..++.+|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 468999999999999999999999988888764
No 219
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.89 E-value=0.00083 Score=66.67 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.7
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~ 234 (431)
.++.-+.|.||+|+|||||.+.|+.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhC
Confidence 4667899999999999999999997
No 220
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.89 E-value=0.00059 Score=60.73 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=28.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc-CCceEEee
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT-KSTFLKLA 244 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~-~~~~i~i~ 244 (431)
.+..|.|.|++|+||||+++.|+..+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 34678999999999999999999988 46666554
No 221
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.89 E-value=0.00058 Score=66.75 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.9
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++.-+.|.||+|+|||||.+.+|.-
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcC
Confidence 46667889999999999999999984
No 222
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.87 E-value=0.00092 Score=59.85 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=25.5
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
+.++..++|.||||+|||++++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34667899999999999999999999874
No 223
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.86 E-value=0.00067 Score=61.51 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=26.1
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
..+.|.||+|+||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468899999999999999999998866543
No 224
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.85 E-value=0.0011 Score=59.17 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=26.2
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
.+.|.||+|+||||+++.++. +|.+++ ++..+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~ 36 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVA 36 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHH
Confidence 478999999999999999998 776655 444443
No 225
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.84 E-value=0.00046 Score=62.35 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=26.0
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
.|+|.|+||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999998766544
No 226
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.83 E-value=0.0008 Score=59.19 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=26.7
Q ss_pred ceeeCCCCCchHHHHHHHHHHc---CCceEEee
Q psy15151 215 VLLYGPPGTGKTLLARACAAQT---KSTFLKLA 244 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~---~~~~i~i~ 244 (431)
+.|.|++|+||||+++.++..+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999987 78877664
No 227
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.81 E-value=0.00051 Score=63.98 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=28.6
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
+..+.|.|++|+|||++++.+|..++.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 57899999999999999999999999876654
No 228
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.81 E-value=0.0097 Score=56.97 Aligned_cols=73 Identities=25% Similarity=0.310 Sum_probs=45.4
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhhh-------Hhh-------------hcchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQLV-------QMF-------------IGDGAKLVRDAFAL 266 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l~-------~~~-------------~g~~~~~~~~lf~~ 266 (431)
.++..++|.||+|+||||++..+|..+ +..+..+++..+- ..+ .+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 355678999999999999999999853 4444444432110 001 01222222334555
Q ss_pred HHhCCCeEEEEccccc
Q psy15151 267 AKEKAPAIIFIDELDA 282 (431)
Q Consensus 267 a~~~~p~vl~iDEid~ 282 (431)
+....|.+|+||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5667788999998764
No 229
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.79 E-value=0.00079 Score=62.17 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=26.3
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceE
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFL 241 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i 241 (431)
+..+.|.||+|+||||+++.|+..++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467999999999999999999998876544
No 230
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.78 E-value=0.0037 Score=58.23 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.0
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||||++.++..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46677889999999999999999984
No 231
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.78 E-value=0.0022 Score=63.17 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=22.8
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++.-+.|.||+|+|||||.+.+|.-
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 45667889999999999999999983
No 232
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.77 E-value=0.00072 Score=60.01 Aligned_cols=29 Identities=17% Similarity=0.426 Sum_probs=25.7
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
.|.|.|++|+||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999886654
No 233
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.77 E-value=0.0069 Score=60.77 Aligned_cols=195 Identities=13% Similarity=0.147 Sum_probs=97.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh----------hHhhhc----------chHHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL----------VQMFIG----------DGAKLVRDAFALA 267 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l----------~~~~~g----------~~~~~~~~lf~~a 267 (431)
++..++|.||+|+||||++..+|..+ +..+..+++..+ .....| .+.......+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678999999999999999998753 455544443211 001111 1222234455556
Q ss_pred HhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCC-CC--hhhhcCCCcceEE
Q psy15151 268 KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI-LD--PALLRSGRLDRKI 344 (431)
Q Consensus 268 ~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~-l~--~~l~r~gR~~~~i 344 (431)
....+.+|+||....+... .+......+..++... ....+++|+.+..... .. ..+.....+ ..+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-------~d~~lm~el~~i~~~~----~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~-~gV 243 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-------EETKLLEEMKEMYDVL----KPDDVILVIDASIGQKAYDLASRFHQASPI-GSV 243 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-------CTTHHHHHHHHHHHHH----CCSEEEEEEEGGGGGGGHHHHHHHHHHCSS-EEE
T ss_pred HhcCCCEEEEECCCCcccc-------CCHHHHHHHHHHHHhh----CCcceEEEEeCccchHHHHHHHHHhcccCC-cEE
Confidence 5567889999998664200 1233334444444443 2344555554433221 11 122211112 234
Q ss_pred EcCCCCHHH----HHHHHHHHHhcCC---------CC--CCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-------
Q psy15151 345 EFPHPNEEA----RARIMQIHSRKMN---------VS--PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR------- 402 (431)
Q Consensus 345 ~~~~p~~~~----r~~Il~~~l~~~~---------~~--~~~~~~~la~~~~g~s~~di~~l~~~A~~~A~~~------- 402 (431)
.+...|... ...+.... +.+ +. ...+.+.++.+.-|. +|+..++..|...-...
T Consensus 244 IlTKlD~~a~~G~als~~~~~--g~Pi~fig~Ge~v~dL~~f~p~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~~ 319 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVAT--GATIKFIGTGEKIDELETFNAKRFVSRILGM--GDIESILEKVKGLEEYDKIQKKME 319 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHHH--TCEEEEEECCSSSSCEEECCHHHHHHHHHCS--SHHHHHHHHHHHC-----------
T ss_pred EEecccccccchHHHHHHHHH--CCCEEEEECCCChHhCccCCHHHHHHHhcCC--chHHHHHHHHHHhhhHHHHHHHHH
Confidence 454444322 23333321 111 11 124456677766554 47777776554321111
Q ss_pred --CCC--CcCHHHHHHHHHHHHH
Q psy15151 403 --GAA--IVTHEDFMDAIMEVQA 421 (431)
Q Consensus 403 --~~~--~It~ed~~~Al~~~~~ 421 (431)
... ..|.+||.+.++.++.
T Consensus 320 k~~~g~~~f~~~d~~~q~~~~~k 342 (433)
T 3kl4_A 320 DVMEGKGKLTLRDVYAQIIALRK 342 (433)
T ss_dssp --------CCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHHh
Confidence 122 6899999999998875
No 234
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.75 E-value=0.00055 Score=61.13 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=27.3
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~ 251 (431)
.|.|.|++|+||||+++.++. ++.+++. +..+...
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~--~d~~~~~ 37 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD--ADKLIHS 37 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE--HHHHHHG
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE--ccHHHHH
Confidence 478999999999999999999 7765544 4444443
No 235
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.73 E-value=0.00085 Score=61.12 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=27.2
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
|+|.||||+||||+++.|+..++.++ ++..+++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~~r 36 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGIFR 36 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeE--EchHHHHH
Confidence 78999999999999999999988654 44444443
No 236
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.71 E-value=0.00042 Score=62.09 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=25.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCce
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTF 240 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~ 240 (431)
.+..|+|.|+||+||||+++.|+..++.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 356789999999999999999999865543
No 237
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.69 E-value=0.0078 Score=53.53 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.0
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..+++.+|+|+|||.++-.++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999998877664
No 238
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.69 E-value=0.00099 Score=61.33 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=26.8
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
+..+.|.||||+|||++++.++..++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4568999999999999999999999866543
No 239
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.68 E-value=0.0012 Score=58.34 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=25.5
Q ss_pred ceeeCCCCCchHHHHHHHHHHc---CCceEEee
Q psy15151 215 VLLYGPPGTGKTLLARACAAQT---KSTFLKLA 244 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~---~~~~i~i~ 244 (431)
|.|.|++|+||||+++.+++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6899999999999999999988 88877553
No 240
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.66 E-value=0.00048 Score=61.79 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=24.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKS 238 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~ 238 (431)
.+..|+|.|++|+||||+++.|+..++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567999999999999999999997653
No 241
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.66 E-value=0.00064 Score=65.87 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQ 247 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~ 247 (431)
..|+|.||+|+|||+|+..||..++..++..|.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 46899999999999999999999998888776543
No 242
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.63 E-value=0.0053 Score=63.32 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=65.4
Q ss_pred CCCCCCceeeCCCCCchHHHHHHH--HHHc--CCceEEeehhhhhH------hhhcc-----------------------
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARAC--AAQT--KSTFLKLAGPQLVQ------MFIGD----------------------- 255 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakal--a~~~--~~~~i~i~~~~l~~------~~~g~----------------------- 255 (431)
++++..++|.||+|+|||+|++.+ +... +...++++..+... ..+|-
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 346778999999999999999994 4422 33344444322100 00000
Q ss_pred -------hHHHHHHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCC
Q psy15151 256 -------GAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD 328 (431)
Q Consensus 256 -------~~~~~~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~ 328 (431)
..............+.|.+|+|||+-.+.+. ..-++.....+..++..+.. .++.||++|...+
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~ 186 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLKQ----IGATTVMTTERIE 186 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCC
Confidence 0112233444455567889999999775332 11244556677777776532 2455777777665
Q ss_pred CC
Q psy15151 329 IL 330 (431)
Q Consensus 329 ~l 330 (431)
.+
T Consensus 187 ~~ 188 (525)
T 1tf7_A 187 EY 188 (525)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 243
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.63 E-value=0.00094 Score=63.90 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=29.8
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP 246 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~ 246 (431)
+.-++|.||+|+|||+|+..+|...+..++..|.-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 34688999999999999999999998887776553
No 244
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.62 E-value=0.001 Score=58.41 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
++.-+.|.||+|+|||||++.++....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 446789999999999999999998753
No 245
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.61 E-value=0.0042 Score=67.15 Aligned_cols=61 Identities=18% Similarity=0.124 Sum_probs=34.8
Q ss_pred CCCCcccccCchHHHHHHHHHhhccccC--hHHHHhcCCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 173 PTEQYSDIGGLDKQIQELIEAVVLPMTH--KEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 173 ~~~~~~~i~G~~~~i~~l~~~i~~~~~~--~~~~~~~g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+...|.++.-.+...+.+...-..|... ...... +.....+++.||+|+|||+++..+...
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456777654444444444443344221 111111 123456999999999999977777543
No 246
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.60 E-value=0.005 Score=67.64 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=20.4
Q ss_pred CCCCceeeCCCCCchHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~ 234 (431)
.+.-++|.||.|+|||++.|.++.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999954
No 247
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.59 E-value=0.0024 Score=56.86 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=29.4
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHhh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~~ 252 (431)
..+.|+|++||||||+++.++..+|.+++ ++..+....
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~~ 50 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHEV 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHHH
Confidence 35789999999999999999998887665 454454433
No 248
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.58 E-value=0.0011 Score=59.11 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=27.0
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
.+.|.|++|+|||++++.+|..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999997776543
No 249
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.56 E-value=0.001 Score=59.34 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=24.5
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKST 239 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~ 239 (431)
+..|+|.|+||+||||+++.|+..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3568999999999999999999987763
No 250
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.54 E-value=0.003 Score=64.76 Aligned_cols=38 Identities=13% Similarity=-0.002 Sum_probs=30.5
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc----CCceEEeeh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAG 245 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~ 245 (431)
|+.++.-++|.|+||+|||++|-.+|... +.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 67777889999999999999999998753 446666554
No 251
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.54 E-value=0.0012 Score=58.82 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.8
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
.++..+.|.||+|+||||+++.++...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 356678999999999999999999875
No 252
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.54 E-value=0.0043 Score=62.65 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=30.3
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeeh
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAG 245 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~ 245 (431)
|+.++.-++|.|+||+|||++|-.+|... +.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 67788889999999999999999888753 556655543
No 253
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.53 E-value=0.00093 Score=59.30 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=28.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhHh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM 251 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~~ 251 (431)
+..|.|.|++|+|||++++.|+.. +.+++ ++..+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~~ 44 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAAR 44 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHHH
Confidence 356889999999999999999998 65554 55554433
No 254
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.52 E-value=0.0015 Score=58.75 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
++.-+.|.||+|+|||++++.|+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456688999999999999999998764
No 255
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.52 E-value=0.0012 Score=61.21 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=30.9
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCce--------EEeehhhhhH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTF--------LKLAGPQLVQ 250 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~--------i~i~~~~l~~ 250 (431)
+..|.|.|++|+|||++|+.|+..++.++ ..+++.++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 35688999999999999999999988763 3566665543
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.52 E-value=0.0013 Score=58.55 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=23.9
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
.++.-+.|.||+|+||||+++.++....
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3556788999999999999999999753
No 257
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.51 E-value=0.0021 Score=56.46 Aligned_cols=38 Identities=32% Similarity=0.274 Sum_probs=28.8
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC---CceEEeehhhh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK---STFLKLAGPQL 248 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~---~~~i~i~~~~l 248 (431)
++..++|.|+||+|||++++.++..++ ..+..++...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 445688999999999999999998753 44555655443
No 258
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.50 E-value=0.0028 Score=66.21 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++++..+.|.||+|+|||||++.++..
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 457778999999999999999999884
No 259
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.50 E-value=0.037 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=18.8
Q ss_pred CCCceeeCCCCCchHHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~ 235 (431)
++.+++.+|+|+|||..+-..+-.
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhHHHHH
Confidence 367999999999999876655443
No 260
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.50 E-value=0.0013 Score=58.84 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=22.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
++..+.|.||+|+|||||++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 567899999999999999999998653
No 261
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.49 E-value=0.0016 Score=60.52 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=26.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFL 241 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i 241 (431)
++..+.|.||+|+||||+++.||..++..++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3456889999999999999999999987654
No 262
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.49 E-value=0.002 Score=57.14 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKS 238 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~ 238 (431)
+.|+|.||+|+|||+|++.|......
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 45899999999999999999887543
No 263
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.48 E-value=0.004 Score=65.15 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=23.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++++..+.|.||+|+|||||++.++..
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 457778999999999999999999984
No 264
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.47 E-value=0.0012 Score=59.49 Aligned_cols=30 Identities=30% Similarity=0.282 Sum_probs=24.9
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
+..|.|.|++|+||||+++.|+. ++.+++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 34688999999999999999998 7765544
No 265
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.43 E-value=0.0045 Score=65.06 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=19.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
+.+++.||||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999998877654
No 266
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.43 E-value=0.0016 Score=62.50 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP 246 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~ 246 (431)
.-++|.||+|+|||+|+..+|..++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3578999999999999999999988777666543
No 267
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.43 E-value=0.0017 Score=58.39 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=30.1
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC----CceEEeehhhh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK----STFLKLAGPQL 248 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~----~~~i~i~~~~l 248 (431)
++..++|.|++|+|||++++.++..++ .+++.++...+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 456788999999999999999998654 55777775444
No 268
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.43 E-value=0.00093 Score=59.82 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=25.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc-CCceEE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT-KSTFLK 242 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~-~~~~i~ 242 (431)
++..+.|.||+|+|||++++.++... +..++.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 44568899999999999999999976 444433
No 269
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.42 E-value=0.0029 Score=56.39 Aligned_cols=69 Identities=25% Similarity=0.170 Sum_probs=40.6
Q ss_pred CCCceeeCCCCCchH-HHHHHHHHH--cCCceEEeehh---hh----hHhhhcc-----hHHHHHHHHHHHHhCCCeEEE
Q psy15151 212 PKGVLLYGPPGTGKT-LLARACAAQ--TKSTFLKLAGP---QL----VQMFIGD-----GAKLVRDAFALAKEKAPAIIF 276 (431)
Q Consensus 212 ~~~vLl~GppGtGKT-~lakala~~--~~~~~i~i~~~---~l----~~~~~g~-----~~~~~~~lf~~a~~~~p~vl~ 276 (431)
+.-.++|||.|+||| .|.+++.+. .+..++.+... .+ .+.. |. .......+++..+ ...+|+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~-g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHH-HHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhcc-CCcccceecCCHHHHHHhcc--CCCEEE
Confidence 345788999999999 999998774 34555555432 11 1111 10 0000112233322 356999
Q ss_pred Ecccccc
Q psy15151 277 IDELDAI 283 (431)
Q Consensus 277 iDEid~l 283 (431)
|||+..+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999997
No 270
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.39 E-value=0.0043 Score=65.08 Aligned_cols=28 Identities=36% Similarity=0.544 Sum_probs=24.6
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++++..+.|.||+|+|||||++.++..
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3567788999999999999999999984
No 271
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.39 E-value=0.015 Score=51.43 Aligned_cols=19 Identities=37% Similarity=0.373 Sum_probs=16.0
Q ss_pred CCCceeeCCCCCchHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLAR 230 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lak 230 (431)
++.+++.+|+|+|||..+-
T Consensus 38 ~~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 3679999999999998643
No 272
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.38 E-value=0.0033 Score=62.91 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=26.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
.+.-|+|.|+||+|||++|+.++..++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 34568899999999999999999988765544
No 273
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.34 E-value=0.0017 Score=63.04 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=27.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeeh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG 245 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~ 245 (431)
..|+|.||+|+|||++|+.||..++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 358899999999999999999998876666543
No 274
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.34 E-value=0.0021 Score=57.96 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=27.0
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
..+.|.|++|+|||++++.++..++.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 5689999999999999999999998766543
No 275
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.33 E-value=0.0019 Score=58.58 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=23.8
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
++++..+.|.||+|+|||||++.++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3466778999999999999999999976
No 276
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.32 E-value=0.0076 Score=55.06 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=18.2
Q ss_pred CCCceeeCCCCCchHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACA 233 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala 233 (431)
+..+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4679999999999998776554
No 277
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.31 E-value=0.004 Score=65.11 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=23.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++++..+.|.||+|+|||||++.++..
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 457778999999999999999999984
No 278
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.31 E-value=0.011 Score=57.31 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=29.5
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH---cCCceEEee
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLA 244 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~ 244 (431)
|+.++.-++|.|+||+|||+||..+|.. .+.++..++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 6678888999999999999999999875 355555543
No 279
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.30 E-value=0.0024 Score=58.53 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=27.5
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
.+..+.|.|++|+|||++++.++..++.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 45678999999999999999999999876543
No 280
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.017 Score=57.32 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15151 32 DINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNK 76 (431)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (431)
.++++.++++.+++.++.++.++++++.++...-..+-.++.+++
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345555666666666666666666666655555555555555544
No 281
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.29 E-value=0.0022 Score=56.39 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=25.5
Q ss_pred CceeeCCCCCchHHHHHHHHHHcCCceEEeehhhh
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQL 248 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l 248 (431)
.+.|.||+|+||||+++.++...+. .+.++...+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 244555443
No 282
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.26 E-value=0.0032 Score=56.34 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
.++.+.|.||+|+|||+|++.|+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456788999999999999999998764
No 283
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.22 E-value=0.0018 Score=57.96 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=27.1
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEeeh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG 245 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i~~ 245 (431)
+.+++|.||||+|||+||..++.... .++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 46799999999999999999998765 6655544
No 284
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.21 E-value=0.004 Score=65.18 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++++..+.|.||+|+|||||++.++..
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457778999999999999999999884
No 285
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.21 E-value=0.0068 Score=69.37 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=25.1
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
.++++..+.|.||+|+|||+|++.+.+..
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 35677889999999999999999999853
No 286
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=96.20 E-value=0.01 Score=59.09 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.3
Q ss_pred CCCCceeeCCCCCchHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLA 229 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~la 229 (431)
....|+-||.+|+|||+..
T Consensus 138 ~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 138 YNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp CCEEEEEESSTTSSHHHHH
T ss_pred CceEEEEecCCCCCCeeEe
Confidence 3467899999999999887
No 287
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.19 E-value=0.0023 Score=55.11 Aligned_cols=28 Identities=32% Similarity=0.345 Sum_probs=24.5
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
+.++..+.|.||.|+|||+|++.++...
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3466678999999999999999999976
No 288
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.18 E-value=0.0024 Score=56.18 Aligned_cols=25 Identities=32% Similarity=0.580 Sum_probs=22.0
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~ 237 (431)
..+.|.||+|+||||+++.++....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998753
No 289
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.18 E-value=0.0091 Score=53.08 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=39.6
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehh---hh----hHhhhcch-----HHHHHHHHHHHHhCCCeEEE
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGP---QL----VQMFIGDG-----AKLVRDAFALAKEKAPAIIF 276 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~---~l----~~~~~g~~-----~~~~~~lf~~a~~~~p~vl~ 276 (431)
+.-.+++||.|+|||+.+-.++... +..++.+... .. +....|.. ......+++.+. ..+.+|+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~-~~~dvVi 86 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE-EDTEVIA 86 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC-TTCSEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh-ccCCEEE
Confidence 3457889999999998888887753 4444433211 00 00011110 000123444433 2467999
Q ss_pred Ecccccc
Q psy15151 277 IDELDAI 283 (431)
Q Consensus 277 iDEid~l 283 (431)
|||+..+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999987
No 290
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.18 E-value=0.0015 Score=62.04 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=25.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHHc-CCceEEeehhhh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQT-KSTFLKLAGPQL 248 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~-~~~~i~i~~~~l 248 (431)
.-|+|.|+||+||||+++.++... +.. .++...+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~--~i~~D~~ 37 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY--NINRDDY 37 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE--EECHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcE--EecccHH
Confidence 458999999999999999999864 544 4444443
No 291
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.16 E-value=0.0018 Score=58.19 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=23.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
++..+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 556788999999999999999999764
No 292
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.14 E-value=0.002 Score=63.94 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=28.1
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeeh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG 245 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~ 245 (431)
.-|+|.||+|+|||+|+..||..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 457899999999999999999998877766544
No 293
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.13 E-value=0.019 Score=62.11 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++..++|.||.|+|||++.|.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4456889999999999999999863
No 294
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.12 E-value=0.002 Score=61.02 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=26.5
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~ 249 (431)
..|.|.|++|+||||+|+.|+ .++.++ +++..+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~ 109 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLG 109 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHH
Confidence 458899999999999999999 577655 4444443
No 295
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.12 E-value=0.042 Score=49.21 Aligned_cols=18 Identities=39% Similarity=0.329 Sum_probs=15.6
Q ss_pred CCCceeeCCCCCchHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLA 229 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~la 229 (431)
++.+++.+|+|+|||..+
T Consensus 51 ~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 367999999999999773
No 296
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.11 E-value=0.0065 Score=57.89 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=26.8
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc----CCceEEeeh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAG 245 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~ 245 (431)
++..++|.||+|+||||++..+|..+ |..+..+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 45678999999999999999998753 445555544
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.10 E-value=0.0028 Score=57.73 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=24.0
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
++++.-+.|.||+|+|||||++.++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35667788999999999999999998754
No 298
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.09 E-value=0.0053 Score=54.74 Aligned_cols=36 Identities=17% Similarity=0.028 Sum_probs=27.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGP 246 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~ 246 (431)
++.-+.|.||+|+|||++++.++..+ +.+++.++..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 44568899999999999999999864 5555555443
No 299
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.08 E-value=0.003 Score=60.50 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=28.0
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHHHcCCce
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF 240 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~~~~~~~ 240 (431)
+.++++..+.|+||+|+|||+|++.|+......+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 3456778899999999999999999999764333
No 300
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.07 E-value=0.0029 Score=56.73 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.1
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
.++..+.|.||+|+|||||++.++....
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4566788999999999999999999764
No 301
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.06 E-value=0.0037 Score=64.24 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=44.1
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehhh-hhH---h--------hhcchHHHHHHHHHHHHhCCCeEEE
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGPQ-LVQ---M--------FIGDGAKLVRDAFALAKEKAPAIIF 276 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~~-l~~---~--------~~g~~~~~~~~lf~~a~~~~p~vl~ 276 (431)
.+..++|.||+|+||||++++++..... ..+.+.... +.- . .++.....+..++..+.+..|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 5577999999999999999999987542 344443321 110 0 0011111233444555567899999
Q ss_pred Ecccc
Q psy15151 277 IDELD 281 (431)
Q Consensus 277 iDEid 281 (431)
++|+-
T Consensus 339 vgEir 343 (511)
T 2oap_1 339 VGEVR 343 (511)
T ss_dssp ESCCC
T ss_pred eCCcC
Confidence 99974
No 302
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.03 E-value=0.0067 Score=69.44 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=24.4
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~ 234 (431)
.++++..+-|.||+|+|||||++.+.+
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhc
Confidence 356788899999999999999999988
No 303
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.99 E-value=0.0022 Score=57.37 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=23.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
++..+.|.||+|+||||+++.++...+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445688999999999999999999876
No 304
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.97 E-value=0.016 Score=59.76 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=29.1
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCC---ceEEeehhhhhH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKS---TFLKLAGPQLVQ 250 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~---~~i~i~~~~l~~ 250 (431)
+.-|+|.|.||+|||++|+.++..++. ....++..++..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 346889999999999999999998744 344455554433
No 305
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.021 Score=59.79 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++..+-|.||+|+|||||.+.|+..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 5567889999999999999999984
No 306
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.94 E-value=0.048 Score=55.42 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=23.6
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
+..+..++|.||+|+||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3455678899999999999999999853
No 307
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.93 E-value=0.043 Score=48.42 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=16.0
Q ss_pred CCCceeeCCCCCchHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLAR 230 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lak 230 (431)
++.+++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3689999999999997554
No 308
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.88 E-value=0.0033 Score=59.59 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=25.4
Q ss_pred cCCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 207 ~g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.|+.++.-++|.||||+|||+|++.+|..
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45667788999999999999999999885
No 309
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.87 E-value=0.0031 Score=58.18 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=24.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKST 239 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~ 239 (431)
++.-+-|.||+|+||||+++.++..++..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 44558899999999999999999987644
No 310
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.85 E-value=0.04 Score=55.65 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.+..++|+||+|+|||+|++.++..
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhh
Confidence 3467999999999999999988775
No 311
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.84 E-value=0.029 Score=55.62 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=36.6
Q ss_pred hCCC--eEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEc
Q psy15151 269 EKAP--AIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEF 346 (431)
Q Consensus 269 ~~~p--~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~ 346 (431)
...| .||+|||.+.-+ +......+.++|..+. .+..||++|..+ .+.. ..|+++.+
T Consensus 311 ~~~~~~~~LlLDEpt~~L----------D~~~~~~l~~~L~~l~-----~~~~vi~itH~~-----~~~~--~~d~i~~l 368 (415)
T 4aby_A 311 VLGADTPSVVFDEVDAGI----------GGAAAIAVAEQLSRLA-----DTRQVLVVTHLA-----QIAA--RAHHHYKV 368 (415)
T ss_dssp HHCCSSSEEEESSTTTTC----------CHHHHHHHHHHHHHHT-----TTSEEEEECSCH-----HHHT--TCSEEEEE
T ss_pred HhCCCCCEEEEECCCCCC----------CHHHHHHHHHHHHHHh-----CCCEEEEEeCcH-----HHHh--hcCeEEEE
Confidence 3456 899999998632 6677788888888763 134567777753 3444 45555555
No 312
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.82 E-value=0.018 Score=59.43 Aligned_cols=54 Identities=9% Similarity=0.096 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 261 RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 261 ~~lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
+-.+..+-...|.||++||--.- -+...+..+.+++..+.. ..+..||++|...
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~g----------LD~~~~~~i~~~l~~l~~---~~g~tvi~vsHdl 446 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSY----------LDVEERYIVAKAIKRVTR---ERKAVTFIIDHDL 446 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHHH---HTTCEEEEECSCH
T ss_pred HHHHHHHHHcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---hCCCEEEEEeCCH
Confidence 44566666788999999996542 266666777777776531 1244567777643
No 313
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.81 E-value=0.01 Score=59.63 Aligned_cols=35 Identities=29% Similarity=0.223 Sum_probs=26.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeeh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAG 245 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~ 245 (431)
++..++|.|++|+|||+++..+|..+ +..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35679999999999999999999864 344454544
No 314
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.79 E-value=0.0049 Score=55.20 Aligned_cols=30 Identities=17% Similarity=0.157 Sum_probs=27.2
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
..|.|.||+|||||++++.||..++.+|+-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 358899999999999999999999999873
No 315
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.75 E-value=0.0025 Score=58.10 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=17.5
Q ss_pred CCCCCceeeCCCCCchHHHHHHHH-HHc
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACA-AQT 236 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala-~~~ 236 (431)
.++.-+.|.||+|+||||+++.++ ...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 355678899999999999999999 764
No 316
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.72 E-value=0.043 Score=54.02 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=61.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc-----CCceEEeehh-------hhhHhh--------hcchH-HHHHH---HH--
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT-----KSTFLKLAGP-------QLVQMF--------IGDGA-KLVRD---AF-- 264 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~-----~~~~i~i~~~-------~l~~~~--------~g~~~-~~~~~---lf-- 264 (431)
.+..++|.||+|+|||+|++.+++.. +..++.+-+. ++...+ ..+++ ..+.. .+
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~ 252 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEK 252 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 66789999999999999999998853 3333333221 111111 11111 11110 11
Q ss_pred -HHH-HhCCCeEEEEccccccccC-------C-CCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCC
Q psy15151 265 -ALA-KEKAPAIIFIDELDAIGTK-------R-FDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327 (431)
Q Consensus 265 -~~a-~~~~p~vl~iDEid~l~~~-------r-~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~ 327 (431)
+.. ..+...+|++|++.+++.. . .-...+-++.+...+..++.........+.+..|.|.-.+
T Consensus 253 AEyfrd~G~dVLil~DslTR~A~A~revs~~~Ge~ps~Gyp~~~~~~~~rl~erA~~~~~~GSIT~i~tvlv~ 325 (422)
T 3ice_A 253 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALID 325 (422)
T ss_dssp HHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSSCBCSSSCBHHHHHHHHHHHTTCEEESSSCEEEEEEEECCS
T ss_pred HHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcCCCCCCCcCHHHHhhhHHHHHhccccCCCcceeEEEEEEec
Confidence 111 2355678899999876421 1 1112344555555555666543333334566666665543
No 317
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.66 E-value=0.022 Score=61.35 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.9
Q ss_pred CCCceeeCCCCCchHHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~ 235 (431)
+..++|.||.|+|||++.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 356889999999999999999863
No 318
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.66 E-value=0.036 Score=59.17 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=19.0
Q ss_pred CCCCCceeeCCCCCchHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARAC 232 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakal 232 (431)
....++++.||+|+|||+.+-..
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHHHH
Confidence 35688999999999999998433
No 319
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.63 E-value=0.044 Score=52.61 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=18.0
Q ss_pred CCceeeCCCCCchHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~ 234 (431)
..+++.+|+|+|||..+-..+-
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHH
Confidence 6899999999999988655444
No 320
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.62 E-value=0.027 Score=58.16 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=32.5
Q ss_pred HHHHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCC
Q psy15151 263 AFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNR 326 (431)
Q Consensus 263 lf~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~ 326 (431)
.+..|-...|.||++||--.- -+......+.+++..+.. +..||++|..
T Consensus 148 ~iA~aL~~~p~illlDEPts~----------LD~~~~~~l~~~l~~l~~-----g~tii~vsHd 196 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSY----------LDVRERMNMAKAIRELLK-----NKYVIVVDHD 196 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHCT-----TSEEEEECSC
T ss_pred HHHHHHHcCCCEEEEECCccc----------CCHHHHHHHHHHHHHHhC-----CCEEEEEEeC
Confidence 345555678999999996543 266666778888877631 3446666654
No 321
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.61 E-value=0.014 Score=56.41 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.3
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
.++.-+.|.||+|+||||+++.+|...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356778999999999999999999853
No 322
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.59 E-value=0.0069 Score=57.89 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=23.9
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
+.++..+.|.||+|+||||+++.+|...
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456678999999999999999999863
No 323
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.59 E-value=0.017 Score=55.07 Aligned_cols=72 Identities=21% Similarity=0.147 Sum_probs=45.6
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh----h---Hhh------------hc-chHHHHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL----V---QMF------------IG-DGAKLVRDAFALAK 268 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l----~---~~~------------~g-~~~~~~~~lf~~a~ 268 (431)
+..+++.|++|+|||+++..+|..+ +..+..+++.-. . ..+ .+ .+...+...++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4568889999999999999999754 455555544211 0 000 01 12223345666666
Q ss_pred hCCCeEEEEcccccc
Q psy15151 269 EKAPAIIFIDELDAI 283 (431)
Q Consensus 269 ~~~p~vl~iDEid~l 283 (431)
...+.+++||=...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 566789999986654
No 324
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.57 E-value=0.014 Score=61.77 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhhccccChHHHHhcCCCCCCCceeeCCCCCchHHHHHHHH
Q psy15151 183 LDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACA 233 (431)
Q Consensus 183 ~~~~i~~l~~~i~~~~~~~~~~~~~g~~~~~~vLl~GppGtGKT~lakala 233 (431)
.+.|.+++..++. ...-.||.||||||||+++-.+.
T Consensus 191 N~~Q~~AV~~al~---------------~~~~~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 191 DTSQKEAVLFALS---------------QKELAIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp CHHHHHHHHHHHH---------------CSSEEEEECCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---------------CCCceEEECCCCCCHHHHHHHHH
Confidence 5667777666543 11347899999999997654443
No 325
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.56 E-value=0.027 Score=51.25 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=16.0
Q ss_pred CCCceeeCCCCCchHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLAR 230 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lak 230 (431)
++.+++.+|+|+|||..+-
T Consensus 67 ~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp TCCEEECCCSSHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 3679999999999997643
No 326
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.55 E-value=0.02 Score=57.48 Aligned_cols=73 Identities=25% Similarity=0.338 Sum_probs=47.0
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc----CCceEEeehhhh----hH------hhhc----------chHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT----KSTFLKLAGPQL----VQ------MFIG----------DGAKLVRDAFAL 266 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~----~~~~i~i~~~~l----~~------~~~g----------~~~~~~~~lf~~ 266 (431)
+++.+++.|++|+||||++-.+|..+ +..+..+++.-+ .. ...| .+...+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998753 666666655421 10 0000 112233556666
Q ss_pred HHhCCCeEEEEcccccc
Q psy15151 267 AKEKAPAIIFIDELDAI 283 (431)
Q Consensus 267 a~~~~p~vl~iDEid~l 283 (431)
++...+.+++||=...+
T Consensus 179 ~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHTTCSEEEEECCCCC
T ss_pred HHhCCCCEEEEECCCcc
Confidence 66556789999986544
No 327
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.53 E-value=0.045 Score=49.54 Aligned_cols=19 Identities=42% Similarity=0.373 Sum_probs=16.0
Q ss_pred CCCceeeCCCCCchHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLAR 230 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lak 230 (431)
++.+++.+|+|+|||..+-
T Consensus 62 ~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHH
Confidence 4789999999999998543
No 328
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.52 E-value=0.0078 Score=55.11 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=28.4
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehhhhhH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQ 250 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~~l~~ 250 (431)
-.+-|.||||+|||++|+.|+..++.+++ ++.+++.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 35678999999999999999999987665 4444443
No 329
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.51 E-value=0.0067 Score=55.47 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
.+.-+.|.||||+||||+++.++..++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 445688999999999999999999876
No 330
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.51 E-value=0.02 Score=63.58 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=19.6
Q ss_pred CCCceeeCCCCCchHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACA 233 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala 233 (431)
+..++|.||.|+|||++.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4668899999999999999994
No 331
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.50 E-value=0.026 Score=50.94 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=16.1
Q ss_pred CCCceeeCCCCCchHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLAR 230 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lak 230 (431)
++.+++.+|+|+|||..+-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4689999999999997644
No 332
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.50 E-value=0.0085 Score=62.85 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL 248 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l 248 (431)
+..|+|.|+||+||||+|++|+..+ +.+++.++...+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 3458999999999999999999998 889988875443
No 333
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.49 E-value=0.015 Score=59.54 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=43.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh-------hH---h-----hhc-----chHHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL-------VQ---M-----FIG-----DGAKLVRDAFALA 267 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l-------~~---~-----~~g-----~~~~~~~~lf~~a 267 (431)
.+..|+|.|+||+||||++..||..+ +..+..+++..+ .. . +++ .+.......+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999754 555555544110 00 0 001 1122223445555
Q ss_pred HhCCCeEEEEcccccc
Q psy15151 268 KEKAPAIIFIDELDAI 283 (431)
Q Consensus 268 ~~~~p~vl~iDEid~l 283 (431)
......++|||-...+
T Consensus 180 ~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHTTCCEEEEEECCCC
T ss_pred HHCCCcEEEEeCCCCc
Confidence 5456779999987654
No 334
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.49 E-value=0.0064 Score=53.51 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=27.9
Q ss_pred ceeeCCCCCchHHHHHHHHHHcCCceEEeehhh
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQ 247 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~~~~i~i~~~~ 247 (431)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 77888877654
No 335
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.47 E-value=0.045 Score=48.97 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.6
Q ss_pred CCceeeCCCCCchHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLAR 230 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lak 230 (431)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 679999999999998643
No 336
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.46 E-value=0.024 Score=53.81 Aligned_cols=73 Identities=22% Similarity=0.230 Sum_probs=45.0
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehh----hhh---Hhh--------h----c-chHHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGP----QLV---QMF--------I----G-DGAKLVRDAFALA 267 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~----~l~---~~~--------~----g-~~~~~~~~lf~~a 267 (431)
++..+.+.|++|+|||+++..+|... +..+..+++. ... ..+ + + .+....+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568888999999999999999853 4444444431 000 000 0 0 1122335566666
Q ss_pred HhCCCeEEEEcccccc
Q psy15151 268 KEKAPAIIFIDELDAI 283 (431)
Q Consensus 268 ~~~~p~vl~iDEid~l 283 (431)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5556789999997554
No 337
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.44 E-value=0.025 Score=62.26 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=22.7
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~ 234 (431)
+.++..+.|.||+|+|||||++.++.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44666789999999999999999994
No 338
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.41 E-value=0.0042 Score=57.11 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.5
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||||++.++..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 346677899999999999999999973
No 339
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.36 E-value=0.026 Score=54.29 Aligned_cols=36 Identities=28% Similarity=0.166 Sum_probs=27.4
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeeh
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAG 245 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~ 245 (431)
.++..++|.||+|+|||+++..+|..+ +..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456779999999999999999998853 445554443
No 340
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.36 E-value=0.0045 Score=57.00 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=23.8
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||||++.++..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 346678999999999999999999984
No 341
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.33 E-value=0.0091 Score=58.45 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
+.++..+.|.||+|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3456678999999999999999999863
No 342
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.29 E-value=0.0031 Score=56.39 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.1
Q ss_pred ceeeCCCCCchHHHHHHHHHHcC
Q psy15151 215 VLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 215 vLl~GppGtGKT~lakala~~~~ 237 (431)
|.|.|++|+||||+++.|+..++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999764
No 343
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.26 E-value=0.0077 Score=57.20 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=24.3
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcC---CceEEeehhhh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTK---STFLKLAGPQL 248 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~---~~~i~i~~~~l 248 (431)
.-|.|.||+|+||||+++.++..++ ..+..+++..+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4588999999999999999999765 33445555444
No 344
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.25 E-value=0.039 Score=57.81 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.9
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||.|+|||||++.++..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35667889999999999999999984
No 345
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.23 E-value=0.014 Score=66.56 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=24.5
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++++..+.|.||+|+|||||++.++..
T Consensus 412 ~i~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 412 KVKSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467778999999999999999999874
No 346
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.20 E-value=0.019 Score=57.32 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
+...++|.||+|+||||++++++....
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 445689999999999999999998754
No 347
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.20 E-value=0.011 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=22.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
...-+.|.||+|+|||++++.+...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999998863
No 348
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.19 E-value=0.033 Score=58.02 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=31.2
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcC----CceEEeehhhhh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTK----STFLKLAGPQLV 249 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~----~~~i~i~~~~l~ 249 (431)
+..|+|.|+||+|||++|++|+..++ .+++.++...+-
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 34688999999999999999999876 678888765543
No 349
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.16 E-value=0.063 Score=52.48 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=16.9
Q ss_pred CCceeeCCCCCchHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACA 233 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala 233 (431)
+.+++.+|+|+|||..+-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 679999999999998654433
No 350
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.13 E-value=0.23 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=18.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
+.+++.+|+|+|||..+-..+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 67999999999999886665543
No 351
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.13 E-value=0.0059 Score=57.11 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||||++.++..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46677889999999999999999984
No 352
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.13 E-value=0.0042 Score=56.68 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.8
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||||++.++..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35667889999999999999999984
No 353
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.10 E-value=0.0095 Score=57.21 Aligned_cols=28 Identities=25% Similarity=0.182 Sum_probs=23.7
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
.++.-+.|.||+|+|||||++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4556688999999999999999998653
No 354
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.10 E-value=0.0057 Score=55.42 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.0
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||||++.++..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36677899999999999999999984
No 355
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.09 E-value=0.092 Score=51.53 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.4
Q ss_pred CCCceeeCCCCCchHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLA 229 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~la 229 (431)
++.+++.+|+|+|||..+
T Consensus 52 ~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEEcCCCCHHHHHH
Confidence 478999999999999743
No 356
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.08 E-value=0.28 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=18.1
Q ss_pred CCCceeeCCCCCchHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~ 234 (431)
+..+++.+|+|+|||..+-..+-
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999987644443
No 357
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.06 E-value=0.082 Score=48.11 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.5
Q ss_pred CCCceeeCCCCCchHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLA 229 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~la 229 (431)
++.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 367999999999999864
No 358
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.03 E-value=0.027 Score=64.30 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.8
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~ 234 (431)
++++..+-|.||+|+|||+|++.++.
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45566788999999999999999997
No 359
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.02 E-value=0.0079 Score=56.41 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=23.2
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||||++.++..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46677899999999999999999984
No 360
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.02 E-value=0.041 Score=53.63 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.8
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~ 236 (431)
...|.|.|+||+|||+++..++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998764
No 361
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.01 E-value=0.0066 Score=56.71 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.7
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||||++.++..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 346678999999999999999999874
No 362
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.00 E-value=0.0075 Score=55.63 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.8
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.+ ..+.|.||+|+|||||++.++..
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 346 77889999999999999999984
No 363
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.00 E-value=0.077 Score=48.32 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.1
Q ss_pred CCCceeeCCCCCchHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLAR 230 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lak 230 (431)
++.+++.+|+|+|||..+-
T Consensus 66 g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHH
Confidence 3689999999999998744
No 364
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.00 E-value=0.035 Score=53.78 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.1
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.+..+.|.||||+|||+|.++++..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4566889999999999999999975
No 365
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.00 E-value=0.0057 Score=56.49 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.4
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||||++.++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 346677899999999999999999983
No 366
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.063 Score=56.23 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.2
Q ss_pred CceeeCCCCCchHHHHHHHHHH
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~ 235 (431)
.+.|.||+|+|||||++.++..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3789999999999999999984
No 367
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.98 E-value=0.07 Score=53.38 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=15.4
Q ss_pred CCceeeCCCCCchHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLA 229 (431)
Q Consensus 213 ~~vLl~GppGtGKT~la 229 (431)
+.+|+.||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 67999999999999875
No 368
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.98 E-value=0.064 Score=53.62 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=44.5
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc---CCceEEeehhhh-------hHhh---h-------c--c-hHHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT---KSTFLKLAGPQL-------VQMF---I-------G--D-GAKLVRDAFALA 267 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~---~~~~i~i~~~~l-------~~~~---~-------g--~-~~~~~~~lf~~a 267 (431)
++..+++.||+|+|||+++..+|..+ +..+..+++.-. ...+ . + . +.......++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999853 344444443211 0000 0 1 1 122235566666
Q ss_pred HhCCCeEEEEcccccc
Q psy15151 268 KEKAPAIIFIDELDAI 283 (431)
Q Consensus 268 ~~~~p~vl~iDEid~l 283 (431)
+...+.+++||=...+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5566789999866543
No 369
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.98 E-value=0.0055 Score=55.26 Aligned_cols=25 Identities=48% Similarity=0.537 Sum_probs=22.1
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++..+.|.||+|+|||||++.++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999999974
No 370
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.97 E-value=0.012 Score=53.68 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=26.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEE
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLK 242 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~ 242 (431)
..|.|.|++|||||++++.||..++.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357889999999999999999999988755
No 371
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.97 E-value=0.0069 Score=56.68 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||||++.++..
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 46677889999999999999999984
No 372
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.97 E-value=0.012 Score=56.34 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=22.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
++..+.|.||+|+||||+++.+|...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999853
No 373
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.96 E-value=0.032 Score=50.86 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..|+|.|++|+|||+|++++...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 56999999999999999999874
No 374
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.96 E-value=0.006 Score=56.87 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=34.6
Q ss_pred HHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 266 LAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 266 ~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
.|-...|.+|++||--.- -++.....+.+++..+.. . +..||++|...+.+
T Consensus 166 raL~~~p~lllLDEPts~----------LD~~~~~~l~~~l~~l~~---~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 166 RALMTNPKMIVMDEPIAG----------VAPGLAHDIFNHVLELKA---K-GITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHTCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCSTT
T ss_pred HHHHcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEecCHHHH
Confidence 334466899999996543 267777888888877531 2 45678888876554
No 375
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.95 E-value=0.074 Score=48.88 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.1
Q ss_pred CCCceeeCCCCCchHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLAR 230 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lak 230 (431)
++.+++.+|+|+|||..+-
T Consensus 80 ~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEcCCCCCchhHhH
Confidence 4789999999999998643
No 376
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.93 E-value=0.05 Score=58.14 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=17.4
Q ss_pred CCCCceeeCCCCCchHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLAR 230 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lak 230 (431)
...++++.||+|+|||+.+-
T Consensus 38 ~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp GTCEEEEECCGGGCHHHHHH
T ss_pred CCCcEEEEcCCccHHHHHHH
Confidence 35789999999999998873
No 377
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.93 E-value=0.0071 Score=56.11 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.0
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||||++.++..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46677889999999999999999984
No 378
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.91 E-value=0.0063 Score=55.69 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=23.2
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||||++.++..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46677899999999999999999985
No 379
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.91 E-value=0.016 Score=55.03 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
.+.-+.|.||+|+||||+++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 445688999999999999999998764
No 380
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.88 E-value=0.055 Score=48.81 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=21.5
Q ss_pred CceeeCCCCCchHHHHHHHHHH---cCCceEEe
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQ---TKSTFLKL 243 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~---~~~~~i~i 243 (431)
-.+++||.|+|||+.+-.++.. .+..++.+
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 3558999999999888777664 34444444
No 381
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.86 E-value=0.0064 Score=56.03 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=22.8
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||||++.++..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35667889999999999999999984
No 382
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.85 E-value=0.011 Score=56.62 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=23.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
.+..+.|.||+|+|||||++.|+..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445688999999999999999999765
No 383
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.85 E-value=0.14 Score=51.81 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=27.7
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCC---ceEEeehhhh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKS---TFLKLAGPQL 248 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~---~~i~i~~~~l 248 (431)
+..|+|.|.||+|||++++.++..++. +...++...+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~ 78 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY 78 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchh
Confidence 356899999999999999999998653 3444444333
No 384
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.84 E-value=0.0077 Score=56.41 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=35.0
Q ss_pred HHHHhCCCeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCC
Q psy15151 265 ALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDIL 330 (431)
Q Consensus 265 ~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l 330 (431)
..+-...|.+|++||--.- -++.....+.+++..+.. . +..||++|...+.+
T Consensus 150 AraL~~~p~lllLDEPts~----------LD~~~~~~l~~~l~~l~~---~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 150 ASVIVHEPDILILDEPLVG----------LDREGKTDLLRIVEKWKT---L-GKTVILISHDIETV 201 (266)
T ss_dssp HHHHTTCCSEEEEESTTTT----------CCHHHHHHHHHHHHHHHH---T-TCEEEEECSCCTTT
T ss_pred HHHHHcCCCEEEEcCcccc----------CCHHHHHHHHHHHHHHHH---c-CCEEEEEeCCHHHH
Confidence 3334456899999997653 267777788888877531 2 44678888876554
No 385
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.79 E-value=0.007 Score=56.17 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
.++..+.|.||+|+|||||++.++...
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 466778899999999999999999853
No 386
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.77 E-value=0.024 Score=54.55 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.5
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
+.-+.|.||+|+||||+++.++..+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34578999999999999999998765
No 387
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.72 E-value=0.011 Score=51.65 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=23.9
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceE
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFL 241 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i 241 (431)
+.++||.|+||+|||++|.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 478999999999999999999874 44443
No 388
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.69 E-value=0.13 Score=49.80 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=17.7
Q ss_pred CCCCceeeCCCCCchHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARAC 232 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakal 232 (431)
.++.+++.+|+|+|||..+-..
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 3478999999999999865543
No 389
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.66 E-value=0.0078 Score=56.84 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++..+.|.||+|+|||||++.++..
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35667889999999999999999984
No 390
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.65 E-value=0.043 Score=57.13 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=19.5
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
.++++.+|+|+|||..+-.++..
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHH
Confidence 56899999999999998777654
No 391
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.64 E-value=0.065 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHHc
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~ 236 (431)
..|+|.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 469999999999999999888753
No 392
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.028 Score=48.89 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.1
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
....+++.|++|+|||+|++++...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457999999999999999999875
No 393
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.64 E-value=0.0081 Score=58.89 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=44.9
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHHcCC--ceEEeehh-hhhH----h---hhc-c-------hHHHHHHHHHHHHhCC
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQTKS--TFLKLAGP-QLVQ----M---FIG-D-------GAKLVRDAFALAKEKA 271 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~~~~--~~i~i~~~-~l~~----~---~~g-~-------~~~~~~~lf~~a~~~~ 271 (431)
.++..++|.||+|+||||++++++..... -.+.++.. ++.. . ++. . ....++..+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 36688999999999999999999986432 23333321 1100 0 110 0 1112345566666677
Q ss_pred CeEEEEccccc
Q psy15151 272 PAIIFIDELDA 282 (431)
Q Consensus 272 p~vl~iDEid~ 282 (431)
|.+++++|+..
T Consensus 253 pd~~l~~e~r~ 263 (361)
T 2gza_A 253 PTRILLAELRG 263 (361)
T ss_dssp CSEEEESCCCS
T ss_pred CCEEEEcCchH
Confidence 88999999753
No 394
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.63 E-value=0.055 Score=49.57 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=15.4
Q ss_pred CCceeeCCCCCchHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLAR 230 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lak 230 (431)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 679999999999997543
No 395
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.61 E-value=0.059 Score=57.17 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=34.6
Q ss_pred CeEEEEccccccccCCCCCCCcCcHHHHHHHHHHHHhhcCCCCCCCeEEEEEeCCCCCCChhhhcCCCcceEEEc
Q psy15151 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEF 346 (431)
Q Consensus 272 p~vl~iDEid~l~~~r~~~~~~~~~~~~~~l~~lL~~~~~~~~~~~v~vI~ttn~~~~l~~~l~r~gR~~~~i~~ 346 (431)
|.+|++||--.- -++.....+.+++..+.. .+..||++|...+ +.. ..|+++.+
T Consensus 565 p~llllDEPt~~----------LD~~~~~~i~~~l~~l~~----~g~tvi~vtHd~~-----~~~--~~d~i~~l 618 (670)
T 3ux8_A 565 RTLYILDEPTTG----------LHVDDIARLLDVLHRLVD----NGDTVLVIEHNLD-----VIK--TADYIIDL 618 (670)
T ss_dssp CEEEEEESTTTT----------CCHHHHHHHHHHHHHHHH----TTCEEEEECCCHH-----HHT--TCSEEEEE
T ss_pred CcEEEEeCCCCC----------CCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHH-----HHH--hCCEEEEe
Confidence 469999996542 266677778888777642 2455777877543 333 45666665
No 396
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.60 E-value=0.086 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=17.4
Q ss_pred CCCceeeCCCCCchHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACA 233 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala 233 (431)
++.+++.+|+|+|||..+-..+
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHH
Confidence 3679999999999997655433
No 397
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.59 E-value=0.037 Score=55.53 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=19.5
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
+-.++.|+||||||+++..++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 45688999999999999888753
No 398
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.53 E-value=0.078 Score=49.11 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.6
Q ss_pred CCceeeCCCCCchHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLAR 230 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lak 230 (431)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 679999999999998654
No 399
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.46 E-value=0.011 Score=58.29 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.8
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++.-+.|.||+|+|||||.+.+|.-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 35667889999999999999999984
No 400
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.42 E-value=0.021 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=21.3
Q ss_pred CCceeeCCCCCchHHHHHHHHHHc
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~ 236 (431)
..+.|.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999864
No 401
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.41 E-value=0.22 Score=51.25 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=15.1
Q ss_pred CCCceeeCCCCCchHHH
Q psy15151 212 PKGVLLYGPPGTGKTLL 228 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~l 228 (431)
++.+++.+|+|+|||..
T Consensus 111 ~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 46899999999999975
No 402
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.40 E-value=0.019 Score=49.79 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.0
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~ 237 (431)
.-.+|+||+|+|||+++++|+..++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3678999999999999999998765
No 403
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.36 E-value=0.046 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.1
Q ss_pred CCCceeeCCCCCchHHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~ 235 (431)
...|+|.|.||+|||+|++++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 356999999999999999999863
No 404
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.34 E-value=0.1 Score=49.51 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=16.3
Q ss_pred CCCCceeeCCCCCchHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLA 229 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~la 229 (431)
+++.+++.+|+|+|||...
T Consensus 130 ~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 130 PPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp SCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCccHHH
Confidence 3578999999999999764
No 405
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.33 E-value=0.11 Score=50.83 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=16.5
Q ss_pred CCCceeeCCCCCchHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARA 231 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~laka 231 (431)
++.+++.+|+|+|||..+-.
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHH
Confidence 46799999999999987543
No 406
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.29 E-value=0.012 Score=61.03 Aligned_cols=39 Identities=33% Similarity=0.346 Sum_probs=30.4
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC----CceEEeehhhhh
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK----STFLKLAGPQLV 249 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~----~~~i~i~~~~l~ 249 (431)
++..+.|.|++|+||||++++|+..++ ..+..++...+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 456789999999999999999999864 345456765553
No 407
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.29 E-value=0.02 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..+.|.||+|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999985
No 408
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.22 E-value=0.0098 Score=55.32 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.5
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
.+.-|.|.|++|+||||+++.|+..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345688999999999999999999884
No 409
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.22 E-value=0.025 Score=50.40 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.6
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
....++|.|++|+|||+|+++++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999854
No 410
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.20 E-value=0.02 Score=52.40 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=22.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~ 237 (431)
.-|.|.|++|+||||+++.++..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999984
No 411
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.17 E-value=0.0092 Score=58.31 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.9
Q ss_pred CCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 210 ~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.++.-+.|.||+|+|||||.+.+|.-
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45667889999999999999999984
No 412
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.16 E-value=0.012 Score=55.99 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.7
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.++..+.|.||+|+|||||++.++..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 456677899999999999999999984
No 413
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.16 E-value=0.016 Score=56.67 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=24.3
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKST 239 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~ 239 (431)
...+.|.||+|+|||||++.|+......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5678999999999999999999976543
No 414
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.15 E-value=0.19 Score=45.33 Aligned_cols=22 Identities=23% Similarity=0.055 Sum_probs=16.7
Q ss_pred CCceeeCCCCCchHH-HHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTL-LARACAA 234 (431)
Q Consensus 213 ~~vLl~GppGtGKT~-lakala~ 234 (431)
.-.+++||-|+|||+ |.+.+.+
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r 51 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRR 51 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999 5566544
No 415
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.15 E-value=0.017 Score=54.15 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.2
Q ss_pred CceeeCCCCCchHHHHHHHHHH
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~ 235 (431)
.+.|.||+|+|||||.++|+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 416
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.14 E-value=0.036 Score=50.14 Aligned_cols=29 Identities=24% Similarity=0.192 Sum_probs=25.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKST 239 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~ 239 (431)
.+.-|.|.|++|+|||++++.++..++..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 34668899999999999999999998764
No 417
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.14 E-value=0.41 Score=48.70 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=18.3
Q ss_pred CCceeeCCCCCchHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~ 234 (431)
..+++.+|+|+|||..+-..+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~ 44 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICE 44 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHH
Confidence 6799999999999988765554
No 418
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.12 E-value=0.02 Score=50.21 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred CceeeCCCCCchHHHHHHHHHHc
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~ 236 (431)
.+.|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999999853
No 419
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.019 Score=58.08 Aligned_cols=28 Identities=29% Similarity=0.288 Sum_probs=24.3
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.+.++..+.|.||+|+|||||+|.|+..
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3456778999999999999999999984
No 420
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.08 E-value=0.014 Score=54.61 Aligned_cols=27 Identities=37% Similarity=0.633 Sum_probs=23.1
Q ss_pred CCCCCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 209 IQPPKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 209 ~~~~~~vLl~GppGtGKT~lakala~~~ 236 (431)
+. +..+.|.||+|+|||||++.++...
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 5678899999999999999999753
No 421
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.04 E-value=0.027 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.0
Q ss_pred CceeeCCCCCchHHHHHHHHHH
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~ 235 (431)
.+++.|++|+|||+|++++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 422
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.99 E-value=0.13 Score=49.79 Aligned_cols=18 Identities=39% Similarity=0.355 Sum_probs=15.6
Q ss_pred CCceeeCCCCCchHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLAR 230 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lak 230 (431)
+.+++.+|+|+|||..+-
T Consensus 59 ~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 679999999999998743
No 423
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.99 E-value=0.083 Score=51.11 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.+..+.|.|+||+|||++++.++..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999875
No 424
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.98 E-value=0.15 Score=49.76 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=16.1
Q ss_pred CCCceeeCCCCCchHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLA 229 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~la 229 (431)
++.+++.+|+|+|||..+
T Consensus 64 ~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCchHHHHH
Confidence 478999999999999875
No 425
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=93.98 E-value=0.26 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=18.8
Q ss_pred CCceeeCCCCCchHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~ 234 (431)
+++++.+|+|+|||..+-..+.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 6799999999999997776654
No 426
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.97 E-value=0.04 Score=57.99 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=18.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..+++.||||||||+++..++..
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999987776653
No 427
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.92 E-value=0.027 Score=51.44 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=18.9
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~ 236 (431)
+.-|.|.||+|+||||+++.++..+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4557888999999999999999875
No 428
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.89 E-value=0.029 Score=47.28 Aligned_cols=23 Identities=13% Similarity=0.236 Sum_probs=20.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
-.+++.|++|+|||+|++++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 429
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.87 E-value=0.052 Score=54.67 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=27.1
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEeehh
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP 246 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~~~ 246 (431)
..+++.+|+|+|||..+-.++...+...+.+...
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 4599999999999999988888777666655443
No 430
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.86 E-value=0.43 Score=43.45 Aligned_cols=68 Identities=22% Similarity=0.140 Sum_probs=34.6
Q ss_pred CCceeeCCCCCchHHHHHHHHHH---cCCceEEeehh-------hhhHhhhcch-----HHHHHHHHHHHHhCCCeEEEE
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLAGP-------QLVQMFIGDG-----AKLVRDAFALAKEKAPAIIFI 277 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~---~~~~~i~i~~~-------~l~~~~~g~~-----~~~~~~lf~~a~~~~p~vl~i 277 (431)
.-.+++||.|+|||+.+-..+.. .+..++.+... .+.+.. |.. -.....+++.+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 45678899999999665555442 23333333211 111111 110 00001234444 44679999
Q ss_pred cccccc
Q psy15151 278 DELDAI 283 (431)
Q Consensus 278 DEid~l 283 (431)
||+..+
T Consensus 97 DEaQF~ 102 (234)
T 2orv_A 97 DEGQFF 102 (234)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999987
No 431
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.85 E-value=0.031 Score=50.38 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=25.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcCCceEEee
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLA 244 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~~~~i~i~ 244 (431)
-.|-|+|..|||||++++.++. +|.+++..|
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4578999999999999999998 887765443
No 432
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=93.84 E-value=0.098 Score=51.87 Aligned_cols=32 Identities=38% Similarity=0.419 Sum_probs=24.0
Q ss_pred CceeeCCCCCchHHHHHHHHHHc----CCceEEeeh
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQT----KSTFLKLAG 245 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~~----~~~~i~i~~ 245 (431)
++++.+|+|+|||..+-.++... +...+.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999888776653 445544443
No 433
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.81 E-value=0.071 Score=49.39 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~ 235 (431)
...|++.|++|+|||+|+.++...
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 434
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.80 E-value=0.34 Score=50.15 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.4
Q ss_pred CCCceeeCCCCCchHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLA 229 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~la 229 (431)
++.+++.+|+|+|||..+
T Consensus 60 ~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEcCCCcHHHHHH
Confidence 467999999999999853
No 435
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.78 E-value=0.16 Score=57.10 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=19.2
Q ss_pred CCCCceeeCCCCCchHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~ 234 (431)
.+..+|+.||+|+|||..+-..+.
T Consensus 198 ~g~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 198 RGESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp TTCCEEEECCSSSHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCChHHHHHHHHH
Confidence 347899999999999988765444
No 436
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.77 E-value=0.029 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.4
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..+.|.|++|+|||+|.++++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 437
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.77 E-value=0.028 Score=56.22 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.3
Q ss_pred CCCC--ceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKG--VLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~--vLl~GppGtGKT~lakala~~ 235 (431)
++.. +.|.||+|+|||||+++|+..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 5555 889999999999999999874
No 438
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.77 E-value=0.032 Score=46.80 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
-.+++.|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 439
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.73 E-value=0.2 Score=49.99 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.6
Q ss_pred CCCCceeeCCCCCchHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLL 228 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~l 228 (431)
.++.+++.+|+|+|||..
T Consensus 92 ~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 92 SGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEECCCCCCchHH
Confidence 347899999999999984
No 440
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.68 E-value=0.025 Score=49.06 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.5
Q ss_pred CceeeCCCCCchHHHHHHHHH
Q psy15151 214 GVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~ 234 (431)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 441
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.68 E-value=0.032 Score=47.17 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
....+++.|++|+|||+|++++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999763
No 442
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.62 E-value=0.027 Score=50.87 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=22.3
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
+.-|.|.|++|+||||+++.++..+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578889999999999999998764
No 443
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.59 E-value=0.036 Score=47.30 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=21.8
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
....|++.|++|+|||+|++++...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999863
No 444
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.58 E-value=0.035 Score=46.57 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..+++.|++|+|||+|++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 445
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.58 E-value=0.035 Score=46.74 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.6
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
-.+++.|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 446
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.56 E-value=0.13 Score=51.73 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=16.3
Q ss_pred CCCCceeeCCCCCchHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLA 229 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~la 229 (431)
.+..+++.||+|+|||..+
T Consensus 130 ~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 130 PPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp SCCEEEEECCSSSSHHHHH
T ss_pred CCCcEEEEcCCCCchhHHH
Confidence 3578999999999999774
No 447
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.55 E-value=0.036 Score=46.73 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
-.+++.|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 448
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.54 E-value=0.028 Score=57.53 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=24.2
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCC
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKS 238 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~ 238 (431)
+..|+|.|.+|+||||++++||..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999874
No 449
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.54 E-value=0.035 Score=47.19 Aligned_cols=23 Identities=48% Similarity=0.652 Sum_probs=20.5
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..|++.|++|+|||+|++++...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999999763
No 450
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.51 E-value=0.031 Score=46.77 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.2
Q ss_pred CceeeCCCCCchHHHHHHHHHH
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~ 235 (431)
.+++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 451
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.49 E-value=0.05 Score=54.68 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=25.1
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKST 239 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~ 239 (431)
.+..+.|.||+|+|||+|++.++......
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 55678999999999999999999986543
No 452
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.49 E-value=0.037 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..+++.|++|+|||+|++++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 453
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.45 E-value=0.039 Score=46.63 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
-.+++.|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 454
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.43 E-value=0.47 Score=50.05 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=21.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCCceEEe
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~~~i~i 243 (431)
...+++.||+|+|||+.+-...-+.+...+.+
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl 263 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVL 263 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEeCCchhHHHHHHHHHHHCCCeEEEE
Confidence 35689999999999976654444444344444
No 455
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.43 E-value=0.096 Score=54.14 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=29.6
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcC---CceEEeehhhhh
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTK---STFLKLAGPQLV 249 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~---~~~i~i~~~~l~ 249 (431)
+..|+|.|++|+|||++++.|+..++ .++..++...+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 35688999999999999999998754 466677765443
No 456
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.42 E-value=0.034 Score=48.07 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..++|.|++|+|||+|+++++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999873
No 457
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.39 E-value=0.04 Score=47.07 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.2
Q ss_pred CCCceeeCCCCCchHHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~ 235 (431)
...|++.|++|+|||+|++++...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999874
No 458
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.35 E-value=0.036 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.5
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
-.|++.|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999873
No 459
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.34 E-value=0.35 Score=52.11 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=19.1
Q ss_pred CCCCceeeCCCCCchHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~ 234 (431)
.+.++|+.||+|+|||..+-..+-
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il 411 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAIL 411 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999988765443
No 460
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.34 E-value=0.044 Score=53.30 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=25.4
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcCCc
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTKST 239 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~~~ 239 (431)
.+..+.|.||+|+|||+|++.++......
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 55779999999999999999999986644
No 461
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.30 E-value=0.042 Score=46.19 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.5
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
-.+++.|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 462
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.28 E-value=0.042 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.6
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..+++.|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999873
No 463
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.28 E-value=0.038 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHc
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~ 236 (431)
+.-|.|.|++|+|||++++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568889999999999999999865
No 464
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.28 E-value=0.019 Score=49.99 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~~ 237 (431)
..+.|.||+|+|||||++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999998643
No 465
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.28 E-value=0.015 Score=51.51 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=22.9
Q ss_pred CCCCCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 208 g~~~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.+.++..+.|.|++|+|||+|+++++..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3345567999999999999999998753
No 466
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.27 E-value=0.042 Score=46.14 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.9
Q ss_pred CceeeCCCCCchHHHHHHHHHH
Q psy15151 214 GVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~~ 235 (431)
.+++.|++|+|||+|++++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
No 467
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.25 E-value=0.036 Score=48.72 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
....|+|.|++|+|||+|++++...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 468
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.24 E-value=0.077 Score=56.52 Aligned_cols=20 Identities=50% Similarity=0.622 Sum_probs=17.3
Q ss_pred CCCceeeCCCCCchHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARA 231 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~laka 231 (431)
..++++.||+|+|||+.+-.
T Consensus 40 ~~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHH
Confidence 47899999999999998743
No 469
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.24 E-value=0.04 Score=46.51 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.1
Q ss_pred CceeeCCCCCchHHHHHHHHH
Q psy15151 214 GVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 214 ~vLl~GppGtGKT~lakala~ 234 (431)
.+++.|++|+|||+|++++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999974
No 470
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.20 E-value=0.036 Score=46.71 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.4
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
-.+++.|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999863
No 471
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.20 E-value=0.043 Score=46.46 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHHc
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQT 236 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~~ 236 (431)
.-.+|+||.|+|||++..|+.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998644
No 472
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.17 E-value=0.043 Score=46.81 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
-.+++.|++|+|||+|++++...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999863
No 473
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.15 E-value=0.029 Score=48.25 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.3
Q ss_pred CCCceeeCCCCCchHHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~ 235 (431)
+..+.|.|+||+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999874
No 474
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.14 E-value=0.044 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..|+|.|++|+|||+|++++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
No 475
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=93.10 E-value=0.46 Score=32.25 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15151 34 NSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNK 76 (431)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (431)
..++..++.++..|..++.+|.+.|+..+.++..++++++++.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577788999999999999999999999999999999999874
No 476
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.08 E-value=0.14 Score=48.70 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.9
Q ss_pred CCCceeeCCCCCchHHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~ 235 (431)
+.-|.|.|+||+|||+|.+++...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 355889999999999999999874
No 477
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.07 E-value=0.068 Score=57.86 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=18.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..+++.||||||||+++..++..
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999987776653
No 478
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.07 E-value=0.047 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
-.|++.|++|+|||+|++++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 479
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.06 E-value=0.43 Score=42.04 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.6
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..|+|.|++|+|||+|++++...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999864
No 480
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.01 E-value=0.048 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..+++.|++|+|||+|++++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 481
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.00 E-value=0.028 Score=51.06 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.8
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
++.-+.|.||.|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3445789999999999999999987
No 482
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.95 E-value=0.049 Score=47.15 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
-.|++.|++|+|||+|+++++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 483
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.92 E-value=0.047 Score=47.44 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=21.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
....+++.|++|+|||+|++++...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999863
No 484
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.91 E-value=0.049 Score=47.35 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..|+|.|++|+|||+|++++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 485
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.91 E-value=0.051 Score=47.18 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.4
Q ss_pred CCCceeeCCCCCchHHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~ 235 (431)
.-.|++.|++|+|||+|++++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999875
No 486
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.87 E-value=0.048 Score=47.68 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.8
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
+...|++.|++|+|||+|++++...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999874
No 487
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.83 E-value=0.054 Score=46.30 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.7
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..+++.|++|+|||+|++++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 488
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.83 E-value=0.053 Score=46.49 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..|++.|++|+|||+|++++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999874
No 489
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.82 E-value=0.044 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.6
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..+++.|++|+|||+|++++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 490
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.79 E-value=0.091 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.2
Q ss_pred CCCceeeCCCCCchHHHHHHHHHH
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~ 235 (431)
...+.|.|+||+|||+|.++++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 446889999999999999999974
No 491
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.79 E-value=0.049 Score=46.43 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.1
Q ss_pred CCceeeCCCCCchHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~ 234 (431)
..|++.|++|+|||+|++++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999975
No 492
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.79 E-value=0.099 Score=51.44 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=26.3
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH---cCCceEEee
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ---TKSTFLKLA 244 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~---~~~~~i~i~ 244 (431)
...++++.||+|+|||++++.++.. .+..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4468999999999999999999875 344455554
No 493
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=92.79 E-value=0.96 Score=48.77 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=19.0
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
+.+++.+|+|+|||..+-..+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~ 286 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEH 286 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 67999999999999887666543
No 494
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.78 E-value=0.045 Score=46.07 Aligned_cols=22 Identities=50% Similarity=0.756 Sum_probs=19.6
Q ss_pred CCceeeCCCCCchHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAA 234 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~ 234 (431)
-.+++.|++|+|||+|++++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999999964
No 495
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.78 E-value=0.046 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.9
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..+++.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 496
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.76 E-value=0.045 Score=47.29 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..+++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 497
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.75 E-value=0.053 Score=49.29 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=22.7
Q ss_pred CCCceeeCCCCCchHHHHHHHHHHcCC
Q psy15151 212 PKGVLLYGPPGTGKTLLARACAAQTKS 238 (431)
Q Consensus 212 ~~~vLl~GppGtGKT~lakala~~~~~ 238 (431)
+.-|.|.|++|+|||++++.++..++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445778899999999999999987544
No 498
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.67 E-value=0.057 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.8
Q ss_pred CCceeeCCCCCchHHHHHHHHHH
Q psy15151 213 KGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 213 ~~vLl~GppGtGKT~lakala~~ 235 (431)
..|+|.|++|+|||+|++++...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 499
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.67 E-value=0.36 Score=46.83 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.8
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHH
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQ 235 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~ 235 (431)
.+..+++.|+||+|||+|.++++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 500
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.64 E-value=0.054 Score=52.85 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=22.7
Q ss_pred CCCCceeeCCCCCchHHHHHHHHHHcC
Q psy15151 211 PPKGVLLYGPPGTGKTLLARACAAQTK 237 (431)
Q Consensus 211 ~~~~vLl~GppGtGKT~lakala~~~~ 237 (431)
++..+.|.||+|+|||||+++|+....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 345688999999999999999997544
Done!