RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15151
(431 letters)
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 479 bits (1235), Expect = e-171
Identities = 153/265 (57%), Positives = 202/265 (76%)
Query: 163 RVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPG 222
R KAMEVDERP +Y DIGGL+KQ+QE+ E V LP+ H E F +GI+PPKG+LLYGPPG
Sbjct: 2 RAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPG 61
Query: 223 TGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDA 282
TGKTLLA+A A +T +TF+++ G +LV+ FIG+GA LV+D F LAKEKAP+IIFIDE+DA
Sbjct: 62 TGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDA 121
Query: 283 IGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDR 342
I KR D+ GDREVQRT+++LL ++DGF + D+K+I ATNR DILDPA+LR GR DR
Sbjct: 122 IAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDR 181
Query: 343 KIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402
IE P P+E+ R I++IH+RKMN++ DVN EE+++ T+ GA+ KA+C EAGM A+R
Sbjct: 182 IIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241
Query: 403 GAAIVTHEDFMDAIMEVQAKKKANL 427
VT +DF A+ ++ KKK +
Sbjct: 242 LRDYVTMDDFRKAVEKIMEKKKVKV 266
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 319 bits (819), Expect = e-105
Identities = 120/384 (31%), Positives = 187/384 (48%), Gaps = 33/384 (8%)
Query: 62 NEKIRENT-----EKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVI 116
N +R N + I + I +L +D G + ++ + A
Sbjct: 85 NRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYR 144
Query: 117 KTSTRQTYFLPVIGLVDAEKL---KPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERP 173
+ + K+ P V D+ + E P + E +
Sbjct: 145 PIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPI-----KREDEEESLN 199
Query: 174 TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACA 233
Y DIGG KQ+ ++ E V LP+ H F +G++PP+G+LLYGPPGTGKTL+ARA A
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 234 AQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKA 293
+T + F + GP+++ G+ +R AF A++ APAIIFIDELDAI KR +
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 294 GDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 353
G+ E +R + +LL +DG A + V+AATNR + +DPAL R GR DR+++ P+
Sbjct: 318 GEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 354 RARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR----------- 402
R I+QIH++ M ++ DV+ E+++ T GA A+C EA + A+R+
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 403 ------GAAIVTHEDFMDAIMEVQ 420
+ VT +DF A+ +
Sbjct: 437 IDAEVMNSLAVTMDDFRWALSQSN 460
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 289 bits (743), Expect = 3e-96
Identities = 98/275 (35%), Positives = 154/275 (56%), Gaps = 25/275 (9%)
Query: 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLAR 230
E P + DIGGL+ +EL E V P+ H +KF+ G+ P KGVL YGPPG GKTLLA+
Sbjct: 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67
Query: 231 ACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 290
A A + ++ F+ + GP+L+ M+ G+ VR+ F A++ AP ++F DELD+I R +
Sbjct: 68 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 127
Query: 291 EKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 350
G R + ++L ++DG S+ ++ +I ATNR DI+DPA+LR GRLD+ I P P+
Sbjct: 128 IGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 187
Query: 351 EEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR-------- 402
E++R I++ + RK V+ DV+ E L++ T+ F+GA +C A +A+R
Sbjct: 188 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247
Query: 403 -----------------GAAIVTHEDFMDAIMEVQ 420
+ + F +A+ +
Sbjct: 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 280 bits (720), Expect = 4e-93
Identities = 96/268 (35%), Positives = 148/268 (55%), Gaps = 23/268 (8%)
Query: 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLAR 230
P ++DIG L+ +EL A++ P+ + ++F LG+ P GVLL GPPG GKTLLA+
Sbjct: 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62
Query: 231 ACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR-FD 289
A A ++ F+ + GP+L+ M++G+ + VR F AK AP +IF DE+DA+ +R
Sbjct: 63 AVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR 122
Query: 290 SEKAGDREV-QRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPH 348
A R V Q LL ++DG + + ++AATNR DI+DPA+LR GRLD+ +
Sbjct: 123 ETGASVRVVNQ-----LLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGL 177
Query: 349 PNEEARARIMQIHSR---KMNVSPDVNYEELSRS--TDDFNGAQCKAVCVEAGMIALRR- 402
P R I++ ++ K + DVN E ++ D + GA A+ EA + ALR+
Sbjct: 178 PPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQE 237
Query: 403 ----------GAAIVTHEDFMDAIMEVQ 420
G V+H+ F +A +V+
Sbjct: 238 MARQKSGNEKGELKVSHKHFEEAFKKVR 265
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 292 bits (749), Expect = 2e-91
Identities = 98/275 (35%), Positives = 154/275 (56%), Gaps = 25/275 (9%)
Query: 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLAR 230
E P + DIGGL+ +EL E V P+ H +KF+ G+ P KGVL YGPPG GKTLLA+
Sbjct: 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 529
Query: 231 ACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 290
A A + ++ F+ + GP+L+ M+ G+ VR+ F A++ AP ++F DELD+I R +
Sbjct: 530 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 589
Query: 291 EKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 350
G R + ++L ++DG S+ ++ +I ATNR DI+DPA+LR GRLD+ I P P+
Sbjct: 590 IGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Query: 351 EEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR-------- 402
E++R I++ + RK V+ DV+ E L++ T+ F+GA +C A +A+R
Sbjct: 650 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 709
Query: 403 -----------------GAAIVTHEDFMDAIMEVQ 420
+ + F +A+ +
Sbjct: 710 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 744
Score = 257 bits (658), Expect = 3e-78
Identities = 107/300 (35%), Positives = 163/300 (54%), Gaps = 25/300 (8%)
Query: 138 KPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLP 197
P V D+ + E P + + E + Y D+GG KQ+ ++ E V LP
Sbjct: 169 DPSPYCIVAPDTVIHCEGEPIKRED-----EEESLNEVGYDDVGGCRKQLAQIKEMVELP 223
Query: 198 MTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGA 257
+ H F +G++PP+G+LLYGPPGTGKTL+ARA A +T + F + GP+++ G+
Sbjct: 224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283
Query: 258 KLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTAD 317
+R AF A++ APAIIFIDELDAI KR + +R + +L L +DG A
Sbjct: 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTL---MDGLKQRAH 340
Query: 318 IKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELS 377
+ V+AATNR + +DPAL R GR DR+++ P+ R I+QIH++ M ++ DV+ E+++
Sbjct: 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA 400
Query: 378 RSTDDFNGAQCKAVCVEAGMIALRR-----------------GAAIVTHEDFMDAIMEVQ 420
T GA A+C EA + A+R+ + VT +DF A+ +
Sbjct: 401 NETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSN 460
Score = 37.5 bits (87), Expect = 0.008
Identities = 8/54 (14%), Positives = 14/54 (25%)
Query: 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGK 225
R + +DI + Q L ++ G P +G
Sbjct: 744 RRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSGGGTGGSVYT 797
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 254 bits (650), Expect = 7e-82
Identities = 83/236 (35%), Positives = 131/236 (55%), Gaps = 8/236 (3%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
+ E+P ++ D+ GL+ + L EAV+LP+ F +P G+LLYGPPGTGK+ L
Sbjct: 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYL 67
Query: 229 ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
A+A A + STF ++ LV ++G+ KLV+ FA+A+E P+IIFID++DA+ R
Sbjct: 68 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 127
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSSTAD-IKVIAATNRVDILDPALLRSGRLDRKIEFP 347
+ E R R ELL Q++G + + + V+ ATN LD A+ R R +R+I P
Sbjct: 128 EGESEASR---RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 182
Query: 348 HPNEEARARIMQIHSRKM-NVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402
P+ AR + +I+ V +Y L T+ ++G+ V +A M +R+
Sbjct: 183 LPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 250 bits (640), Expect = 2e-80
Identities = 88/237 (37%), Positives = 134/237 (56%), Gaps = 9/237 (3%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
V ERP ++SD+ GL+ + L EAV+LP+ F P +G+LL+GPPGTGK+ L
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYL 61
Query: 229 ARACAAQTK-STFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 287
A+A A + STF ++ LV ++G+ KLV++ F LA+E P+IIFIDE+D++ R
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 288 FDSEKAGDREVQRTMLELLNQLDGFSSTAD-IKVIAATNRVDILDPALLRSGRLDRKIEF 346
++E R R E L Q+ G D I V+ ATN +LD A+ R R +++I
Sbjct: 122 SENESEAAR---RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 176
Query: 347 PHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402
P P ARA + ++H S + ++ EL R TD ++GA + +A M +R+
Sbjct: 177 PLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 245 bits (628), Expect = 6e-79
Identities = 92/269 (34%), Positives = 138/269 (51%), Gaps = 22/269 (8%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
V+ +++DI G D Q L E V+LP E F L P KG+LL+GPPG GKTLL
Sbjct: 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLL 70
Query: 229 ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
ARA A + +TFL ++ L ++GDG KLVR FA+A+ P+IIFIDE+D++ ++R
Sbjct: 71 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERS 130
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSSTAD---IKVIAATNRVDILDPALLRSGRLDRKIE 345
SE R R E L + DG D I V+AATNR LD A LR R +++
Sbjct: 131 SSEHEASR---RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVY 185
Query: 346 FPHPNEEARARIMQIHSRKMNVSPDV-NYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA 404
P+E+ R ++ +K D L++ TD ++G+ A+ +A + +R
Sbjct: 186 VSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELN 245
Query: 405 AI------------VTHEDFMDAIMEVQA 421
+T +DF ++ ++
Sbjct: 246 VEQVKCLDISAMRAITEQDFHSSLKRIRR 274
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 243 bits (623), Expect = 1e-78
Identities = 105/252 (41%), Positives = 154/252 (61%), Gaps = 1/252 (0%)
Query: 165 KAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTG 224
+A + E P + D+ G ++ +EL E +V + + +F +G + PKGVLL GPPG G
Sbjct: 27 RARVLTEAPKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVG 85
Query: 225 KTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIG 284
KT LARA A + + F+ +G V+MF+G GA VRD F AK AP I+FIDE+DA+G
Sbjct: 86 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 145
Query: 285 TKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKI 344
KR G+ E ++T+ +LL ++DGF I V+AATNR DILDPALLR GR DR+I
Sbjct: 146 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 205
Query: 345 EFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA 404
P+ + R +I++IH+R ++ DV+ L++ T F GA + + EA ++A R G
Sbjct: 206 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 265
Query: 405 AIVTHEDFMDAI 416
+T +D +A
Sbjct: 266 RKITMKDLEEAA 277
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 245 bits (628), Expect = 3e-78
Identities = 91/268 (33%), Positives = 146/268 (54%), Gaps = 21/268 (7%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
+D P + DI G++ + E VV PM + F L PPKG+LL+GPPGTGKTL+
Sbjct: 75 MDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLI 133
Query: 229 ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
+ A+Q+ +TF ++ L ++G+G K+VR FA+A+ + PA+IFIDE+D++ ++R
Sbjct: 134 GKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRG 193
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSSTAD--IKVIAATNRVDILDPALLRSGRLDRKIEF 346
D E R R E L QLDG +++++ I V+ ATNR +D A R RL +++
Sbjct: 194 DGEHESSR---RIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYI 248
Query: 347 PHPNEEARARIMQIH-SRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR--G 403
P P AR +I+ S++ + E++ + +D F+GA +C EA + +R
Sbjct: 249 PLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQT 308
Query: 404 AAI----------VTHEDFMDAIMEVQA 421
A I + + DF +A V+
Sbjct: 309 ADIATITPDQVRPIAYIDFENAFRTVRP 336
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 240 bits (615), Expect = 1e-77
Identities = 101/255 (39%), Positives = 156/255 (61%), Gaps = 1/255 (0%)
Query: 167 MEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKT 226
M +++ ++D+ G D+ +E+ E +V + +F LG + PKGVL+ GPPGTGKT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKT 59
Query: 227 LLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTK 286
LLA+A A + K F ++G V+MF+G GA VRD F AK+ AP IIFIDE+DA+G +
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 119
Query: 287 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEF 346
R G E ++T+ ++L ++DGF I VIAATNR D+LDPALLR GR DR++
Sbjct: 120 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 179
Query: 347 PHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAI 406
P+ R +I+++H R++ ++PD++ ++R T F+GA + EA + A R +
Sbjct: 180 GLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRV 239
Query: 407 VTHEDFMDAIMEVQA 421
V+ +F A ++
Sbjct: 240 VSMVEFEKAKDKIMM 254
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 239 bits (613), Expect = 2e-77
Identities = 104/253 (41%), Positives = 152/253 (60%), Gaps = 2/253 (0%)
Query: 165 KA-MEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGT 223
+ E P + D+ G ++ +EL E +V + + +F +G + PKGVLL GPPG
Sbjct: 2 PLGSVLTEAPKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGV 60
Query: 224 GKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAI 283
GKT LARA A + + F+ +G V+MF+G GA VRD F AK AP I+FIDE+DA+
Sbjct: 61 GKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 120
Query: 284 GTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRK 343
G KR G+ E ++T+ +LL ++DGF I V+AATNR DILDPALLR GR DR+
Sbjct: 121 GRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ 180
Query: 344 IEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG 403
I P+ + R +I++IH+R ++ DV+ L++ T F GA + + EA ++A R G
Sbjct: 181 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 240
Query: 404 AAIVTHEDFMDAI 416
+T +D +A
Sbjct: 241 RRKITMKDLEEAA 253
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 242 bits (619), Expect = 2e-76
Identities = 88/268 (32%), Positives = 139/268 (51%), Gaps = 21/268 (7%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
VD ++ DI G D Q L E V+LP E F L P +G+LL+GPPG GKT+L
Sbjct: 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTML 164
Query: 229 ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
A+A AA++ +TF ++ L ++G+G KLVR FA+A+E P+IIFID++D++ +R
Sbjct: 165 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR 224
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSSTAD--IKVIAATNRVDILDPALLRSGRLDRKIEF 346
+ E R R E L + DG S D + V+ ATNR LD A+LR R +++
Sbjct: 225 EGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYV 279
Query: 347 PHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAA 405
PNEE R +++ K +L+R TD ++G+ A+ +A + +R
Sbjct: 280 SLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKP 339
Query: 406 I------------VTHEDFMDAIMEVQA 421
+ DF +++ +++
Sbjct: 340 EQVKNMSASEMRNIRLSDFTESLKKIKR 367
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 237 bits (606), Expect = 4e-76
Identities = 91/243 (37%), Positives = 141/243 (58%), Gaps = 4/243 (1%)
Query: 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236
+ D+ G+ + E+ E V + E+F+ LG + PKG LL GPPG GKTLLA+A A +
Sbjct: 5 FKDVAGMHEAKLEVRE-FVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63
Query: 237 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEK-AGD 295
+ FL +AG + V++ G GA VR F A+ +AP I++IDE+DA+G KR + +
Sbjct: 64 QVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123
Query: 296 REVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARA 355
E ++T+ +LL ++DG +T + V+A+TNR DILD AL+R GRLDR + P + R
Sbjct: 124 TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERR 183
Query: 356 RIMQIHSRKMNVSPDVNY--EELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413
I + H + + ++ + + L+ T F+GA +C EA + A R G V +F
Sbjct: 184 EIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFE 243
Query: 414 DAI 416
A+
Sbjct: 244 YAV 246
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 239 bits (612), Expect = 6e-76
Identities = 83/236 (35%), Positives = 132/236 (55%), Gaps = 8/236 (3%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
+ E+P ++ D+ GL+ + L EAV+LP+ F +P G+LLYGPPGTGK+ L
Sbjct: 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYL 100
Query: 229 ARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
A+A A + STF ++ LV ++G+ KLV+ FA+A+E P+IIFID++DA+ R
Sbjct: 101 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 160
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSSTAD-IKVIAATNRVDILDPALLRSGRLDRKIEFP 347
+ E R R ELL Q++G + + + V+ ATN LD A+ R R +R+I P
Sbjct: 161 EGESEASR---RIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 215
Query: 348 HPNEEARARIMQIHSRKM-NVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402
P+ AR + +I+ +V +Y L T+ ++G+ V +A M +R+
Sbjct: 216 LPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 235 bits (602), Expect = 2e-75
Identities = 100/256 (39%), Positives = 155/256 (60%), Gaps = 7/256 (2%)
Query: 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLA 229
E+P ++ D+ G ++ +E++E +V + + E++ NLG + PKGVLL GPPGTGKTLLA
Sbjct: 3 AEKPNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61
Query: 230 RACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFD 289
+A A + F + G ++MF+G GA VRD F AK++AP+IIFIDE+DAIG R
Sbjct: 62 KAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAA 121
Query: 290 SEKAG---DREVQRTMLELLNQLDGFSSTAD-IKVIAATNRVDILDPALLRSGRLDRKIE 345
+RE +T+ +LL ++DGF S + V+AATNR +ILDPAL+R GR DR++
Sbjct: 122 GGVVSGNDERE--QTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVL 179
Query: 346 FPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAA 405
P+ R I+++H + + ++ DVN +E+++ T GA + EA ++A R
Sbjct: 180 VDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQK 239
Query: 406 IVTHEDFMDAIMEVQA 421
V + +A+ A
Sbjct: 240 EVRQQHLKEAVERGIA 255
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 236 bits (603), Expect = 2e-75
Identities = 47/258 (18%), Positives = 92/258 (35%), Gaps = 26/258 (10%)
Query: 179 DIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS 238
+ G + + VV K I+ P + ++G G GK+ +
Sbjct: 5 KLDGFYIAPAFMDKLVVHIT--KNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGI 62
Query: 239 TFLKLAGPQLVQMFIGDGAKLVRDAFALA----KEKAPAIIFIDELDAIGTKRFDSEK-- 292
+ ++ +L G+ AKL+R + A ++ +FI++LDA + + +
Sbjct: 63 NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYT 122
Query: 293 AGDREVQRTMLELLN-----QLDGF---SSTADIKVIAATNRVDILDPALLRSGRLDRKI 344
++ V T++ + + QL G A + +I N L L+R GR+++
Sbjct: 123 VNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 182
Query: 345 EFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA 404
P E R + R +V E++ + D+F G +
Sbjct: 183 WAPTR--EDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDE-- 234
Query: 405 AIVTHEDFMDAIMEVQAK 422
V I ++ K
Sbjct: 235 --VRKWVSGTGIEKIGDK 250
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 234 bits (599), Expect = 3e-72
Identities = 106/257 (41%), Positives = 155/257 (60%), Gaps = 1/257 (0%)
Query: 165 KAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTG 224
+A + E P + D+ G ++ +EL E +V + + +F +G + PKGVLL GPPG G
Sbjct: 18 RARVLTEAPKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVG 76
Query: 225 KTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIG 284
KT LARA A + + F+ +G V+MF+G GA VRD F AK AP I+FIDE+DA+G
Sbjct: 77 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 136
Query: 285 TKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKI 344
KR G+ E ++T+ +LL ++DGF I V+AATNR DILDPALLR GR DR+I
Sbjct: 137 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI 196
Query: 345 EFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA 404
P+ + R +I++IH+R ++ DV+ L++ T F GA + + EA ++A R G
Sbjct: 197 AIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR 256
Query: 405 AIVTHEDFMDAIMEVQA 421
+T +D +A V
Sbjct: 257 RKITMKDLEEAADRVMM 273
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 231 bits (590), Expect = 1e-71
Identities = 88/237 (37%), Positives = 135/237 (56%), Gaps = 9/237 (3%)
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
V ERP ++SD+ GL+ + L EAV+LP+ F P +G+LL+GPPGTGK+ L
Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYL 183
Query: 229 ARACAAQTK-STFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKR 287
A+A A + STF ++ LV ++G+ KLV++ F LA+E P+IIFIDE+D++ R
Sbjct: 184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 243
Query: 288 FDSEKAGDREVQRTMLELLNQLDGFSSTAD-IKVIAATNRVDILDPALLRSGRLDRKIEF 346
++E R R E L Q+ G D I V+ ATN +LD A+ R R +++I
Sbjct: 244 SENESEAAR---RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYI 298
Query: 347 PHPNEEARARIMQIHSRKMNVS-PDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRR 402
P P ARA + ++H S + +++EL R TD ++GA + +A M +R+
Sbjct: 299 PLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 232 bits (593), Expect = 1e-71
Identities = 114/261 (43%), Positives = 154/261 (59%), Gaps = 9/261 (3%)
Query: 165 KAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTG 224
+ + D+GG ++ I+EL E VV + KF +G + PKG+LL GPPGTG
Sbjct: 3 TMYKPSGNKRVTFKDVGGAEEAIEELKE-VVEFLKDPSKFNRIGARMPKGILLVGPPGTG 61
Query: 225 KTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIG 284
KTLLARA A + F ++G V++F+G GA VRD FA AK AP I+FIDE+DA+G
Sbjct: 62 KTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVG 121
Query: 285 TKRFDSEKAGDREVQRTMLELLNQL----DGFSSTADIKVIAATNRVDILDPALLRSGRL 340
R G E ++T LNQL DGF S I V+AATNR DILDPALLR GR
Sbjct: 122 RHRGAGLGGGHDEREQT----LNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRF 177
Query: 341 DRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIAL 400
D+KI P+ R +I++IH+R ++ DVN E +++ T F GA + + EA ++A
Sbjct: 178 DKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAA 237
Query: 401 RRGAAIVTHEDFMDAIMEVQA 421
R G +T +DF +AI V A
Sbjct: 238 REGRDKITMKDFEEAIDRVIA 258
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 183 bits (467), Expect = 2e-55
Identities = 42/257 (16%), Positives = 89/257 (34%), Gaps = 20/257 (7%)
Query: 170 DERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLA 229
++ + + I + +++ L + + P VLL GPP +GKT LA
Sbjct: 25 EDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALA 81
Query: 230 RACAAQTKSTFLKLAGPQLVQMFIGDG-AKLVRDAFALAKEKAPAIIFIDELDAIGTKRF 288
A ++ F+K+ P + F + ++ F A + + + +D+++ +
Sbjct: 82 AKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYV- 140
Query: 289 DSEKAGDREVQRTMLELLNQLDGFSSTAD-IKVIAATNRVDILDPALLRSGRLDRKIEFP 347
G R + LL L + +I T+R D+L + I
Sbjct: 141 ---PIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ-EMEMLNAFSTTIHV- 195
Query: 348 HPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDD---FNGAQCKAVCVEAGMIALRRGA 404
PN ++++ N D +++ + G + + +E +
Sbjct: 196 -PNIATGEQLLEALELLGNFK-DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYR 253
Query: 405 AIVTHEDFMDAIMEVQA 421
F+ + E A
Sbjct: 254 V----RKFLALLREEGA 266
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 140 bits (356), Expect = 2e-41
Identities = 36/80 (45%), Positives = 48/80 (60%)
Query: 344 IEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRG 403
HPNEEAR I++IHSRKMN++ +N +++ +GA+ K VC EAGM ALR
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65
Query: 404 AAIVTHEDFMDAIMEVQAKK 423
VT EDF A+ +V K
Sbjct: 66 RVHVTQEDFEMAVAKVMQKD 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 133 bits (338), Expect = 8e-39
Identities = 36/77 (46%), Positives = 48/77 (62%)
Query: 347 PHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAI 406
P PNEEAR I++IHSRKMN++ +N +++ +GA+ K VC EAGM ALR
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVH 60
Query: 407 VTHEDFMDAIMEVQAKK 423
VT EDF A+ +V K
Sbjct: 61 VTQEDFEMAVAKVMQKD 77
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B*
2dvw_B*
Length = 83
Score = 120 bits (304), Expect = 6e-34
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 350 NEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTH 409
+ + I + KMN+S +V+ E+ D +GA ++C E+GM+A+R IV
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLA 61
Query: 410 EDFMDAIMEVQAKKKANLNYY 430
+DF A V K + +Y
Sbjct: 62 KDFEKAYKTVIKKDEQEHEFY 82
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} PDB: 2dzo_B
Length = 82
Score = 102 bits (257), Expect = 3e-27
Identities = 17/77 (22%), Positives = 33/77 (42%)
Query: 354 RARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413
R I + KM+++P+ + + L D +GA A+ EAG+ A+R+ ++ D
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 62
Query: 414 DAIMEVQAKKKANLNYY 430
+A +
Sbjct: 63 EAYATQVKTDNTVDKFD 79
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase;
transcription hydrolase complex, nucleotide-binding;
2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Length = 109
Score = 88.8 bits (220), Expect = 9e-22
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 20/125 (16%)
Query: 47 MKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLD 106
+ ++ +++ K ++ ++ P LV V ++L+
Sbjct: 5 HHHRMKQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILE---------------- 48
Query: 107 AQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKA 166
V+K+ST + + ++ E+LKPG V +N+ + I+ LP D V
Sbjct: 49 ----DGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYG 104
Query: 167 MEVDE 171
EV+E
Sbjct: 105 FEVEE 109
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone,
chaperone-protein binding complex; HET: DNA; 3.80A
{Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 84.6 bits (210), Expect = 1e-20
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 350 NEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTH 409
+ E RA I +IHS+ M+V + +E +SR + GA+ ++VC EAGM A+R + T
Sbjct: 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATE 61
Query: 410 EDFMDAIMEVQA---KKKANLNY 429
+DF+ A+ +V + K + Y
Sbjct: 62 KDFLKAVDKVISGYKKFSSTSRY 84
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 84.8 bits (209), Expect = 2e-18
Identities = 52/286 (18%), Positives = 88/286 (30%), Gaps = 32/286 (11%)
Query: 157 PAEYDARVKAMEVDERPTEQYSDIGGLD---KQIQELIEAVVLPMTHKEKFVNLGIQPPK 213
+ A + E E ++ GL +I+E +++ LG+
Sbjct: 10 SIDLRAEYEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVE----RARQKLGLAHET 65
Query: 214 GVL---LYGPPGTGKTLLARACAAQT-------KSTFLKLAGPQLVQMFIGDGAKLVRDA 263
L G PGTGKT +A A K + + LV +IG A ++
Sbjct: 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEV 125
Query: 264 FALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAA 323
A ++FIDE + R D+E+ +E +L+++
Sbjct: 126 LKRAMGG---VLFIDEAYYLY--RPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADR 180
Query: 324 TNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEE-------L 376
+P R+ IEFP ++E I N E L
Sbjct: 181 MENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGL 238
Query: 377 SRSTDDF-NGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQA 421
R+ F N + A + R + A+ +
Sbjct: 239 RRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALSTIAE 284
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 6e-13
Identities = 57/394 (14%), Positives = 108/394 (27%), Gaps = 132/394 (33%)
Query: 47 MKSEVMRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLD 106
M E E Q Q + I L ++ + D +D ++ +
Sbjct: 7 MDFET----GEHQYQYKDI------------LSVFEDAFVD--NFDCKDVQDMPKSILSK 48
Query: 107 AQRKGKCAVIKTSTR--QTYFLPVIGLVDAEKLKPGDLV-----GVNKDSY-LILETLPA 158
+ +I + T L K ++V V + +Y ++ +
Sbjct: 49 EEID---HIIMSKDAVSGTLRL-----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 159 EYDARVKAMEVDERPTEQYSD-IGGLDKQIQELIEAVVLPMTHKEKFVNL-----GIQPP 212
E T Y + L Q + ++ + ++ L ++P
Sbjct: 101 EQRQP-------SMMTRMYIEQRDRLYNDNQVFAK---YNVSRLQPYLKLRQALLELRPA 150
Query: 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAP 272
K VL+ G G+GKT +A + VQ +
Sbjct: 151 KNVLIDGVLGSGKTWVA-LDVCLSYK----------VQCKMDFK---------------- 183
Query: 273 AIIF-IDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331
IF + + T+LE+L +L + +D
Sbjct: 184 --IFWL--------------NLKNCNSPETVLEMLQKL-----------------LYQID 210
Query: 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMN-----VSPDVNYEELSRSTDDFNGA 386
P + R D +A + ++ K V +V + + FN
Sbjct: 211 PNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA---WNAFNL- 264
Query: 387 QCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQ 420
CK ++ R + DF+ A
Sbjct: 265 SCK-------ILLTTRFKQVT---DFLSAATTTH 288
Score = 44.5 bits (104), Expect = 6e-05
Identities = 58/417 (13%), Positives = 131/417 (31%), Gaps = 132/417 (31%)
Query: 33 INSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKNL----------PYLV 82
I R RL ++ K V R+ L K+R+ +++ KN+ ++
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYL-----KLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 83 SNVIELLDVDPQDTEEDGAV-VDLDAQRKGKC----AVIK------------TSTRQTYF 125
+V L Q + ++L C V++ ++R +
Sbjct: 168 LDV--CLSYKVQCKMDFKIFWLNL-----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 126 LPVIGLVDAEKLKPGDLVG--VNKDSYLILETLPAEYDARV-KAMEVDER---PTEQYS- 178
+ + + + + L+ ++ L+L + +A+ A + + T
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAWNAFNLSCKILLTTRFKQV 277
Query: 179 -DIGGLDKQIQELIEAVVLPMTHKE------KFVNLGIQ--PPKGVLLYGPPGTGKTLLA 229
D ++ + +T E K+++ Q P
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR----------------- 320
Query: 230 RACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFA-------LAKEKAPAII--FIDEL 280
P+ + + A+ +RD A + +K II ++ L
Sbjct: 321 EVLT----------TNPRRLSII----AESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 281 DAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADI--KVIA------ATNRVDILDP 332
+ E + ++ ++L F +A I +++ + V ++
Sbjct: 367 E-------------PAEYR----KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 333 ALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRS-TDDFNGAQC 388
L + +++ P E I I+ ++ V + N L RS D +N +
Sbjct: 410 KLHKYSLVEK-----QPKES-TISIPSIY-LELKVKLE-NEYALHRSIVDHYNIPKT 458
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 67.1 bits (163), Expect = 9e-13
Identities = 26/202 (12%), Positives = 57/202 (28%), Gaps = 21/202 (10%)
Query: 18 EESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENTEKIKVNKN 77
E L + + + L+ I + + ++ L+ +++ E++
Sbjct: 37 REQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96
Query: 78 LPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKL 137
P ++ D D V + TS R+ L +DA L
Sbjct: 97 PPSGYGVLLATHD--------DDTVD------------VFTSGRK-MRLTCSPNIDAASL 135
Query: 138 KPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLP 197
K G V +N+ ++ E+ ++++ L + ++
Sbjct: 136 KKGQTVRLNEALTVVEAGTFEAVGEISTLREILADGHRALVVGHADEERVVWLADPLIAE 195
Query: 198 MTHKEKFVNLGIQPPKGVLLYG 219
L L G
Sbjct: 196 DLPDGLPEALNDDTRPRKLRPG 217
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 68.1 bits (166), Expect = 1e-12
Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 26/167 (15%)
Query: 203 KFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ--TKSTFLKLAGPQLVQMFIGDGAKLV 260
+ + + VLL GPPGTGKT LA A A + +K F + G ++ I +++
Sbjct: 54 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIK-KTEVL 112
Query: 261 RDAFALA---KEKAPAIIFIDELDAIGTKRFDS---------------EKAGDREVQ--- 299
+ F A + K ++ E+ + ++ K Q
Sbjct: 113 MENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKL 172
Query: 300 -RTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIE 345
++ E L + + + I + A + V + D + E
Sbjct: 173 DPSIFESLQK-ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAE 218
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 68.0 bits (166), Expect = 2e-12
Identities = 42/230 (18%), Positives = 76/230 (33%), Gaps = 41/230 (17%)
Query: 172 RPTEQYSDIGGLDKQIQELIEAV----VLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTL 227
PT + G + +L + + G + +LYGPPG GKT
Sbjct: 34 APT-NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTT 92
Query: 228 LARACAAQTKSTFLKL-A----GPQLVQMFIGDGAK-------LVRDAFALAKEKAPAII 275
A A + L+ A L+ + + + A +I
Sbjct: 93 AAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVI 152
Query: 276 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVD--ILDPA 333
+DE+D + GDR + + +I N + + P
Sbjct: 153 IMDEVDGMS--------GGDRGGVGQLAQFC-------RKTSTPLILICNERNLPKMRP- 196
Query: 334 LLRSGRLDRKIEFPHPNEEA-RARIMQIHSR-KMNVSPDVNYEELSRSTD 381
+ I+F P+ + ++R+M I R K + P+V + L ++T
Sbjct: 197 -FDR--VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV-IDRLIQTTR 242
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 3e-12
Identities = 83/477 (17%), Positives = 152/477 (31%), Gaps = 133/477 (27%)
Query: 16 EGEESLGDDILRMSTDDINSRTRLLDNEIKIMKSEVMRISHELQAQNEKIRENT--EKIK 73
+ D +L + + L N+I H L A+ + + T + +
Sbjct: 74 PSKVGQFDQVLNLCLTEFE-NCYLEGNDI-----------HALAAKLLQENDTTLVKTKE 121
Query: 74 VNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKT----STRQTYF--L- 126
+ KN Y+ + + + P D + + A+ A +G ++ YF L
Sbjct: 122 LIKN--YITARI---MAKRPFDKKSNSAL--FRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 127 -------PVIG-LVD--AEKLKPGDLVGVNKDSYLILETLPAEYDARVKA--MEVDERPT 174
++G L+ AE L L+ D+ + + + P
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSE--LIRTTLDAEKVF---TQGLN--ILEWLENPSNTPD 227
Query: 175 EQYSD--------IGGLDKQI-QELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGK 225
+ Y IG + Q+ ++ A +L T E L KG G +
Sbjct: 228 KDYLLSIPISCPLIGVI--QLAHYVVTAKLLGFTPGELRSYL-----KGAT-----GHSQ 275
Query: 226 TLL-ARACA-AQTKSTFLKLAGPQLVQMF-IGDGAKLVRDAFALAKEKAPAIIFIDELDA 282
L+ A A A + +F + +F IG VR E P +
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIG-----VR-----CYEAYPNTSLPPSILE 325
Query: 283 IGTKRFDSEKAGDREVQRT-MLELLNQLDGFSSTADIKVIAATN-------RVDI-L--- 330
DS + E + ML + + + TN +V+I L
Sbjct: 326 ------DSLENN--EGVPSPMLSIS----NLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 331 --------DPALLRSGRLD-RKIEFPHPNEEARA----RIMQI-----------HSRKMN 366
P L L RK + P +++R R ++ HS +
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 367 VSPDVNYEELSRSTDDFNGAQCK-AV-CVEAGMIALRRGAAIVTHEDFMDAIMEVQA 421
+ D+ ++L ++ FN + V G LR + ++ E +D I+ +
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-SDLRVLSGSIS-ERIVDCIIRLPV 488
Score = 42.3 bits (99), Expect = 3e-04
Identities = 53/263 (20%), Positives = 82/263 (31%), Gaps = 82/263 (31%)
Query: 208 GIQPPK-GVLLYGPPGTGKTLLARACAAQTKSTF-------LKLAGPQLVQMFIGDGAKL 259
G Q G+ LY + + RA K T+ + L F G+ K
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADN-HFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 260 VRDAF-ALAKEKAP------AIIFIDELDAIGTK-RFDSEKAGDREVQRTMLELLNQLDG 311
+R+ + A+ E IF E++ T F SEK LL+
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIF-KEINEHSTSYTFRSEK-----------GLLSA--- 1728
Query: 312 FSST-----ADIKVIAATNRVDILDPALLRS-GRLDRKIEFP-HPNEE-----ARARIMQ 359
T A + + L+S G + F H E + A +M
Sbjct: 1729 ---TQFTQPA----LTLMEKA-AF--EDLKSKGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 360 I-------HSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVT-HED 411
I R M + V +EL RS GMIA+ G + ++
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRS--------------NYGMIAINPGRVAASFSQE 1824
Query: 412 FMDAIMEVQAKKK------ANLN 428
+ ++E K+ N N
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYN 1847
Score = 39.6 bits (92), Expect = 0.002
Identities = 52/333 (15%), Positives = 95/333 (28%), Gaps = 130/333 (39%)
Query: 107 AQRKG-------KCAVIK-------TSTRQTYFLPVIGLVDAEKLKPGDLV----GVN-- 146
+Q +G + + TY ++ +V P +L G
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIV---INNPVNLTIHFGGEKGK 1682
Query: 147 --KDSY--LILETLPAEYDARVKAMEVDERPTEQYSDI------GGLDK-QI-QELIEAV 194
+++Y +I ET+ D ++K ++ + E + G L Q Q + +
Sbjct: 1683 RIRENYSAMIFETIV---DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 195 ------VLPMTHKEKFVNLGIQPPKGVL----L--YGPPGTGKTLLARACAAQTKSTFLK 242
L K K G+ P L Y A A A
Sbjct: 1740 EKAAFEDL----KSK----GLIPADATFAGHSLGEYA---------ALASLADV------ 1776
Query: 243 LAGPQLVQMFIGDGAKLVR---DAFALAKEKAPAIIFIDELD-------AIGTKRFDSEK 292
M I ++V +A + DEL AI R
Sbjct: 1777 --------MSIESLVEVVFYRGMTMQVAVPR-------DELGRSNYGMIAINPGRV--AA 1819
Query: 293 AGDREVQRTMLELLNQLDGF--------SSTADIKVIAATNR-VDILDPALLRSGRLDRK 343
+ +E + ++E + + G+ V A R +D + L
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY-VAAGDLRALDTVTNVL--------- 1869
Query: 344 IEFPHPNEEARARIMQIHSRKMNVSPDVNYEEL 376
N ++ +I ++ S + EE+
Sbjct: 1870 ------NF---IKLQKIDIIELQKSLSL--EEV 1891
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 60.1 bits (145), Expect = 5e-10
Identities = 46/276 (16%), Positives = 93/276 (33%), Gaps = 51/276 (18%)
Query: 182 GLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARA---------- 231
+ QI+++ + ++ P + +YG GTGKT + +
Sbjct: 24 HREDQIRKIASILAPLYREEK---------PNNIFIYGLTGTGKTAVVKFVLSKLHKKFL 74
Query: 232 ---------CAAQTKST-----FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFI 277
L+ ++ + R A+ + +I +
Sbjct: 75 GKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVL 134
Query: 278 DELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPAL--L 335
DE+DA K + ++ + + ++++ + I I TN V +D +
Sbjct: 135 DEIDAFVKKY-------NDDILYKLSRINSEVNK----SKISFIGITNDVKFVDLLDPRV 183
Query: 336 RSGRLDRKIEFPHPNEEARARIMQ---IHSRKMNVSPDVNYEELSRSTDDFNGAQCKA-- 390
+S + +I FP N E I+ + K V PD + + +G +A
Sbjct: 184 KSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALD 243
Query: 391 VCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKKKAN 426
+ +G IA R V E A E++ + +
Sbjct: 244 LLRVSGEIAERMKDTKVKEEYVYMAKEEIERDRVRD 279
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 57.9 bits (141), Expect = 3e-09
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 11/69 (15%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPA- 273
++L+GPPGTGKT LA A + +++ + G K +R+A A++ A
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 274 ---IIFIDE 279
I+F+DE
Sbjct: 106 RRTILFVDE 114
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 57.6 bits (138), Expect = 3e-09
Identities = 37/282 (13%), Positives = 73/282 (25%), Gaps = 54/282 (19%)
Query: 184 DKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLY---GPPGTGKTLLARACAAQTKSTF 240
+ + L + + G ++Y G G GKT LA+ +
Sbjct: 28 RGEAEALARIYLNRLLS-------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA 80
Query: 241 LKLAGPQLVQMFIGDGAKLVRDAFA---------------------------LAKEKAPA 273
K A + + L E
Sbjct: 81 AKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYL 140
Query: 274 IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPA 333
++ +DE S E T+L + ++ I + + V L
Sbjct: 141 LVILDEFQ-----SMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYM 195
Query: 334 LLRSGR----LDRKIEFPHPNEEARARIMQIHSR---KMNVSPDVNYEELSRSTDDFNGA 386
+ + + K+ P I++ + + V + E +S + G
Sbjct: 196 REKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 255
Query: 387 QCKA-----VCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKK 423
A A +A G ++ + A+ E +A
Sbjct: 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAAS 297
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 54.8 bits (131), Expect = 2e-08
Identities = 38/275 (13%), Positives = 72/275 (26%), Gaps = 58/275 (21%)
Query: 184 DKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ-------- 235
++Q+Q+L + ++ L G PGTGKT+ R
Sbjct: 23 EQQLQQLDILL-------GNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTAR 75
Query: 236 ----------TKSTFLKLAGPQLVQMF--IGDGAKLVRDAF--ALAKEKAPAIIFIDELD 281
+ + L F G L + + +D+
Sbjct: 76 FVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAF 135
Query: 282 AIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPAL--LRSGR 339
+ ++ T + L + D I ++ + +L+ R
Sbjct: 136 NLAP-----------DILSTFIRLGQEADKL-GAFRIALVIVGHNDAVLNNLDPSTRGIM 183
Query: 340 LDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEE-----------LSRSTDDFNGAQC 388
I F ++ I + R + +Y E D G
Sbjct: 184 GKYVIRFSPYTKDQIFDI--LLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDAR 241
Query: 389 KA--VCVEAGMIALRRGAAIVTHEDFMDAIMEVQA 421
A + + A + G + ED + EV
Sbjct: 242 LAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 276
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 53.6 bits (128), Expect = 5e-08
Identities = 37/267 (13%), Positives = 90/267 (33%), Gaps = 35/267 (13%)
Query: 184 DKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243
+ +++ A+ + N + L G GTGKT +++ + + +
Sbjct: 26 EDILRDAAIAI------RYFVKN---EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKED 76
Query: 244 AGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTML 303
+ V+ + ++ A+ A + +K + +
Sbjct: 77 EEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAI 136
Query: 304 ELLNQLDG--------------FSSTADIKVIAATNRVDI---LDPALLRSGRLDRKIEF 346
L+++D S A+I VI +N +++ ++P + S I
Sbjct: 137 IYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPR-VLSSLGPSVIFK 195
Query: 347 PHPNEEARARIMQIHS---RKMNVSPDVNYEELSRSTDDFNGAQCKA--VCVEAGMIALR 401
P+ E+ + + + K ++ ++ + +G KA + A +A
Sbjct: 196 PYDAEQLKFILSKYAEYGLIKGTYDDEIL-SYIAAISAKEHGDARKAVNLLFRAAQLASG 254
Query: 402 RGAAIVTHEDFMDAIMEVQAKKKANLN 428
G I+ E AI++ + ++
Sbjct: 255 GG--IIRKEHVDKAIVDYEQERLIEAV 279
>3h43_A Proteasome-activating nucleotidase; regulatory particle,
nucleosidase, ATP-binding, cytoplasm,
nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus
jannaschii}
Length = 85
Score = 47.1 bits (112), Expect = 3e-07
Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 20/102 (19%)
Query: 63 EKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQ 122
++ ++ + P +V V++ + + VV +K+ST
Sbjct: 2 KENEILRRELDRMRVPPLIVGTVVDKVG--------ERKVV------------VKSSTGP 41
Query: 123 TYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARV 164
++ + V V+ + L PG V +N+ + +++ LP
Sbjct: 42 SFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPELEHHHH 83
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 44.4 bits (104), Expect = 5e-05
Identities = 44/271 (16%), Positives = 87/271 (32%), Gaps = 52/271 (19%)
Query: 182 GLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST-- 239
+ +++ L E + + P LLYG GTGKT +AR + ++
Sbjct: 23 HREAELRRLAEVL------APALRG---EKPSNALLYGLTGTGKTAVARLVLRRLEARAS 73
Query: 240 ------------FLKLAGPQLVQMFIGD-------------GAKLVRDAFALAKEKAPAI 274
P V I + G R L++ + I
Sbjct: 74 SLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYI 133
Query: 275 IFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPAL 334
I +DE+D + + Q + + + ++ TN + ++
Sbjct: 134 IVLDEIDFLPKRPGG---------QDLLYRITRINQELGDRVWVSLVGITNSLGFVENLE 184
Query: 335 --LRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEEL---SRSTDDFNGAQCK 389
++S + ++ FP I++ + + ++ + + + +G +
Sbjct: 185 PRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARR 244
Query: 390 A--VCVEAGMIALRRGAAIVTHEDFMDAIME 418
A + AG IA RR V E A E
Sbjct: 245 ALDLLRVAGEIAERRREERVRREHVYSARAE 275
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 42.3 bits (100), Expect = 2e-04
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 211 PPKGVLLYGPPGTGKTLLARACAA----------QTKSTFLKLAGPQLVQMFIGDGAKLV 260
PK +L+ GP G GKT +AR A TK T + G ++ + D
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIR-DLTDSA 107
Query: 261 RDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDRE-VQRTMLELL 306
A ++ I+FIDE+D I K S RE VQR +L L+
Sbjct: 108 GGAIDAVEQN--GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 41.1 bits (97), Expect = 3e-04
Identities = 30/80 (37%), Positives = 33/80 (41%), Gaps = 19/80 (23%)
Query: 216 LLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI----GD--GAKLVRD---AFAL 266
L GPPGTGKT A A A L G FI D G +VR FA
Sbjct: 42 LFSGPPGTGKTATAIALARD-------LFGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94
Query: 267 AKEKAPA---IIFIDELDAI 283
A IIF+DE DA+
Sbjct: 95 TAPIGGAPFKIIFLDEADAL 114
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 40.4 bits (95), Expect = 7e-04
Identities = 30/79 (37%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 216 LLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI----GD--GAKLVRD---AFAL 266
L GPPGTGKT A A A L G FI D G +VR FA
Sbjct: 42 LFSGPPGTGKTATAIALARD-------LFGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94
Query: 267 AKEKAPA---IIFIDELDA 282
A IIF+DE DA
Sbjct: 95 TAPIGGAPFKIIFLDEADA 113
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 40.0 bits (94), Expect = 9e-04
Identities = 40/140 (28%), Positives = 54/140 (38%), Gaps = 38/140 (27%)
Query: 161 DARVKAMEVDERP-TEQY-----SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKG 214
++ ++V E+P E+Y DI G QE I + +L
Sbjct: 2 SEEIREVKVLEKPWVEKYRPQRLDDIVG-----QEHIVKRLKHYVKTGSMPHL------- 49
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI----GD--GAKLVRD---AFA 265
L GPPG GKT A A A + L G F+ D G ++R+ FA
Sbjct: 50 -LFAGPPGVGKTTAALALARE-------LFGENWRHNFLELNASDERGINVIREKVKEFA 101
Query: 266 LAKEKAPA---IIFIDELDA 282
K A IIF+DE DA
Sbjct: 102 RTKPIGGASFKIIFLDEADA 121
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 39.1 bits (91), Expect = 0.001
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFL 241
G+Q P +++ G P TGKT L++A A + L
Sbjct: 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLL 34
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 39.0 bits (91), Expect = 0.002
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 166 AMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGK 225
A RP +S I G + L+ V P GVL++G GTGK
Sbjct: 12 ASGAKTRPVFPFSAIVGQEDMKLALLLTAVDPGIG-------------GVLVFGDRGTGK 58
Query: 226 TLLARACAA 234
+ RA AA
Sbjct: 59 STAVRALAA 67
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 37.7 bits (88), Expect = 0.002
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 15/100 (15%)
Query: 202 EKFV-NLGIQPPKGVLLYGPPGTGKTLLA----RACAAQTKSTFLKLAGPQLVQMF---I 253
FV N + KG+ G PG GKT LA +A + L+ +
Sbjct: 27 RVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLM 86
Query: 254 GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKA 293
+G +D L ++ +D+L G++R +
Sbjct: 87 DEG----KDTKFLKTVLNSPVLVLDDL---GSERLSDWQR 119
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 39.0 bits (91), Expect = 0.002
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 215 VLLYGPPGTGKTLLARACAA 234
V L GPPG K+L+AR
Sbjct: 44 VFLLGPPGIAKSLIARRLKF 63
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 36.6 bits (85), Expect = 0.006
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 209 IQPPKGVLLYGPPGTGKTLLARACA 233
+ KG+ L+G G GKT L A A
Sbjct: 51 GKKMKGLYLHGSFGVGKTYLLAAIA 75
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 37.1 bits (86), Expect = 0.009
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 206 NLGIQPPKGVLLYGPPGTGKTLLARACA 233
KG+ LYG G GK+ L A A
Sbjct: 146 QYPSAEQKGLYLYGDMGIGKSYLLAAMA 173
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 36.6 bits (85), Expect = 0.014
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 203 KFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLK 242
+ + + VLL G PGTGK++L +A A + L+
Sbjct: 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLE 90
Score = 29.7 bits (67), Expect = 2.1
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 31/141 (21%)
Query: 316 ADIKVIAATNR--VDILDPALLRSGRLDRKIEFPHP------------NEEARARIMQIH 361
D ++AA N VD + PAL R + + N + +
Sbjct: 251 CDFVLVAAGNLDTVDKMHPAL-----RSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQE 305
Query: 362 SRKMNVSPDVNY-------EELSRSTDD-----FNGAQCKAVCVEAGMIALRRGAAIVTH 409
++ P E + + AG IA+++G V
Sbjct: 306 VKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVER 365
Query: 410 EDFMDAIMEVQAKKKANLNYY 430
ED ++A+ + +K ++Y
Sbjct: 366 EDVIEAVKMAKPLEKQLADWY 386
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 35.9 bits (83), Expect = 0.023
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 19/81 (23%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI----GD--GAKLVRD---AFA 265
+L YGPPGTGKT A A + + G M + D G +VR+ FA
Sbjct: 49 LLFYGPPGTGKTSTIVALARE-------IYGKNYSNMVLELNASDDRGIDVVRNQIKDFA 101
Query: 266 LAKEKAPA---IIFIDELDAI 283
++ +I +DE DA+
Sbjct: 102 STRQIFSKGFKLIILDEADAM 122
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 35.6 bits (83), Expect = 0.024
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAI 274
VLL GPPG GKT LA A++ ++ +GP LV+ GD A + L + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--QGDMAAI------LTSLERGDV 105
Query: 275 IFIDE 279
+FIDE
Sbjct: 106 LFIDE 110
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 35.5 bits (82), Expect = 0.028
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 20/81 (24%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI----GD--GAKLVRD---AFA 265
+++ G PG GKT A + L G + D G +VR+ FA
Sbjct: 45 MIISGMPGIGKTTSVHCLAHE-------LLGRSYADGVLELNASDDRGIDVVRNQIKHFA 97
Query: 266 LAKEKAPA----IIFIDELDA 282
K P I+ +DE D+
Sbjct: 98 QKKLHLPPGKHKIVILDEADS 118
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 35.3 bits (80), Expect = 0.029
Identities = 13/197 (6%), Positives = 47/197 (23%), Gaps = 48/197 (24%)
Query: 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI---------------- 253
K + + K L + ++ + P + I
Sbjct: 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIW 102
Query: 254 ----------GDGAKLVRDAF--ALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRT 301
+ + +K +I I + + + ++
Sbjct: 103 FAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS-------------EKI 149
Query: 302 MLELLNQLDGFSSTADIKVIAATNRVDILDPAL---LRSGRLDRKIEFPHPNEEARARIM 358
+ + S + + +I + + +I+ ++ ++
Sbjct: 150 LQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQM- 206
Query: 359 QIHSRKMNVSPDVNYEE 375
I +R ++ + +
Sbjct: 207 -IITRLKSLLKPFHVKV 222
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 34.0 bits (79), Expect = 0.030
Identities = 20/130 (15%), Positives = 32/130 (24%), Gaps = 59/130 (45%)
Query: 215 VLLYGPPGTGKTLLARA----------------CAAQTKSTFLKLAGPQLVQMFIGDGAK 258
V LYG PGTG+ AR + F
Sbjct: 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDN---------APQLNDF------ 71
Query: 259 LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGD--REVQRTMLELLNQLDGFSSTA 316
ALA+ + + RE Q +++L +Q
Sbjct: 72 -----IALAQG---GTLVLSHP-------------EHLTREQQYHLVQLQSQ-----EHR 105
Query: 317 DIKVIAATNR 326
++I +
Sbjct: 106 PFRLIGIGDT 115
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 34.7 bits (79), Expect = 0.031
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFL 241
+P + V++ G G+GKT +A A +T F
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 34.8 bits (81), Expect = 0.038
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPA- 273
+LL+GPPG GKT LA A + +GP + + GD A + LA
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--PGDLAAI------LANSLEEGD 92
Query: 274 IIFIDE 279
I+FIDE
Sbjct: 93 ILFIDE 98
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 34.8 bits (81), Expect = 0.038
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAI 274
+L GP G GKT LA + + + A P + + GD A + L I
Sbjct: 58 ILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKS--GDLAAI------LTNLSEGDI 109
Query: 275 IFIDE 279
+FIDE
Sbjct: 110 LFIDE 114
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 35.0 bits (81), Expect = 0.042
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 191 IEAVVLPMTHKE---KFVNLGIQPPKGVLLYGP-PGTGKTLLARACAAQTKSTFLKLAGP 246
I+ +LP KE + G P ++L+ P PGTGKT +A+A + + + G
Sbjct: 25 IDECILPAFDKETFKSITSKGKIP--HIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82
Query: 247 QLVQMFIGDGAKLVRD---AFALAKEKAPA--IIFIDELDAIGTK 286
VR FA A +I IDE D G
Sbjct: 83 D-------CKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA 120
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal binding
protein; HET: 2PE TLA; 1.80A {Ralstonia solanacearum}
Length = 69
Score = 31.0 bits (70), Expect = 0.088
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 66 RENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDL 105
+ I N PY + ++ ++ + L
Sbjct: 4 MADDVVITARNNGPYHIKGSFRIVTQGGRELPVEQGQAWL 43
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 33.8 bits (78), Expect = 0.094
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 18/84 (21%)
Query: 215 VLLYGPPGTGKTLLARACA-------AQTKSTFLKLAGPQLVQMFIGDG-----AKLVRD 262
+LL GP G+GKTL+A+ A A + +T L AG ++G+ +L++
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAG------YVGEDVENILTRLLQA 128
Query: 263 AFALAKEKAPAIIFIDELDAIGTK 286
+ ++ I+FIDE+D I
Sbjct: 129 SDWNVQKAQKGIVFIDEIDKISRL 152
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 32.5 bits (75), Expect = 0.094
Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 34/116 (29%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDG-AKLVRDAFALAKEKAPA 273
V L G G+ +AR G V + + + +KA
Sbjct: 30 VFLTGEAGSPFETVARY---------FHKNGTPWVSPARVEYLIDMPMELL----QKAEG 76
Query: 274 -IIFIDELDAIGTKRFDSEKAGD--REVQRTMLELLNQLDGFSSTADIKVIAATNR 326
++++ ++ R +Q + ++ + + ++VIA+ +
Sbjct: 77 GVLYVGDI-------------AQYSRNIQTGITFIIGKAE----RCRVRVIASCSY 115
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 33.2 bits (75), Expect = 0.098
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252
+ ++L G GK+ + R + +L L++
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM 43
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 33.7 bits (77), Expect = 0.13
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLA 229
G+ + L+ G GTGKTL +
Sbjct: 35 GLPIGRSTLVSGTSGTGKTLFS 56
Score = 33.0 bits (75), Expect = 0.22
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235
G +L G GTGKTLL
Sbjct: 277 GFFKDSIILATGATGTGKTLLVSRFVEN 304
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 32.9 bits (75), Expect = 0.13
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLA 229
G VLL G GTGKT A
Sbjct: 26 GFPEGTTVLLTGGTGTGKTTFA 47
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 33.3 bits (77), Expect = 0.14
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 22/86 (25%)
Query: 215 VLLYGPPGTGKTLLARACA-------AQTKSTFLKLAGPQLVQMFIGDG-----AKLVRD 262
+LL GP G+GKTLLA A +T L AG ++G+ KL++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAG------YVGEDVENIIQKLLQK 107
Query: 263 A-FALAKEKA-PAIIFIDELDAIGTK 286
+ + +KA I++ID++D I K
Sbjct: 108 CDYDV--QKAQRGIVYIDQIDKISRK 131
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 32.7 bits (75), Expect = 0.18
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 212 PKG--VLLYGPPGTGKTLLA 229
P+ VLL G PGTGKT+ +
Sbjct: 21 PERNVVLLSGGPGTGKTIFS 40
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 32.0 bits (72), Expect = 0.21
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQ 235
+LL G PG+GK+ +A A A
Sbjct: 9 GNILLLSGHPGSGKSTIAEALANL 32
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 32.3 bits (74), Expect = 0.22
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 212 PKG--VLLYGPPGTGKTLLA 229
P+G + L G PGTGKT+ +
Sbjct: 21 PQGFFIALTGEPGTGKTIFS 40
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 32.9 bits (75), Expect = 0.23
Identities = 27/182 (14%), Positives = 61/182 (33%), Gaps = 41/182 (22%)
Query: 204 FVNLGIQPPKGVLLYGPPGTGKTLLARA--------------CAAQTKSTFLKLAGPQLV 249
++ + + ++L GPPG+GKT+ + ++ T L
Sbjct: 1296 VLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHC 1355
Query: 250 QMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL---- 305
+ + V + ++F DE++ T ++ +++ R M+E
Sbjct: 1356 EYKRTPSGETV---LRPTQLGKWLVVFCDEINLPSTDKYGTQRVI--TFIRQMVEKGGFW 1410
Query: 306 -LNQLDGFSSTADIKVIAATN------RVDILDPALLRSGRLDRK---IEFPHPNEEARA 355
+ + I+ + A N RV + + R R + P+ +
Sbjct: 1411 RTSDHT-WIKLDKIQFVGACNPPTDAGRVQL-------THRFLRHAPILLVDFPSTSSLT 1462
Query: 356 RI 357
+I
Sbjct: 1463 QI 1464
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 32.3 bits (73), Expect = 0.25
Identities = 31/159 (19%), Positives = 46/159 (28%), Gaps = 46/159 (28%)
Query: 211 PPK--GVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQ-----LVQMFIGDGAKLVRDA 263
PK L GP +GKT LA A L + P + + I + D
Sbjct: 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDV 225
Query: 264 --FALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG-FSSTADIK- 319
P+ I+ LD L + LDG + K
Sbjct: 226 KGTGGESRDLPSGQGINNLD----------------------NLRDYLDGSVKVNLEKKH 263
Query: 320 ----------VIAATNRVDILDPALLRSGRLDRKIEFPH 348
I N + P L++ R ++I+F
Sbjct: 264 LNKRTQIFPPGIVTMNEYSV--PKTLQA-RFVKQIDFRP 299
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 32.4 bits (74), Expect = 0.28
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 216 LLYGPPGTGKTLLARACAA 234
L+ PG G L A +
Sbjct: 28 LIQALPGMGDDALIYALSR 46
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 32.0 bits (72), Expect = 0.30
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLARACAA 234
+ L P G GK++LA AA
Sbjct: 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA
helicase, acetyltransferase, GCN5 acetyltransferase;
HET: ACO ADP; 2.35A {Escherichia coli K12}
Length = 671
Score = 32.3 bits (73), Expect = 0.32
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 206 NLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGP-----QLVQMFIGDGAKLV 260
L PP + G GK+ LA ++ + + P ++ F G+ + +
Sbjct: 186 QLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAI-VTAPAKASTDVLAQFAGEKFRFI 244
Query: 261 RDAFALAKEKAPAIIFIDELDAIGT 285
LA ++ + +DE AI
Sbjct: 245 APDALLASDEQADWLVVDEAAAIPA 269
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 31.8 bits (72), Expect = 0.33
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 87 ELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLV 143
+ + +P D A++ L + G K + + + LK GD +
Sbjct: 108 KEILQEPFGAGVDLALIRLKPDQNGVSLGDK--------ISPAKIGTSNDLKDGDKL 156
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 31.4 bits (72), Expect = 0.39
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 219 GPPGTGKTLLARACAAQ 235
GP G+GKT LA A A Q
Sbjct: 29 GPAGSGKTYLAMAKAVQ 45
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 31.7 bits (72), Expect = 0.40
Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 41/177 (23%)
Query: 215 VLLYGPPGTGKTLLARACAAQ------TKSTFLKLA-----GPQLVQMFIGDGAKLVRDA 263
+L YGPPGTGKT A + KS L+L G +V+ + + A+L
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSK 120
Query: 264 FALAKEKAPA-----IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADI 318
+ + II +DE D++ T D++ A ++RTM + +S
Sbjct: 121 PSKHDLENYPCPPYKIIILDEADSM-TA--DAQSA----LRRTM-------ETYSGV--T 164
Query: 319 KVIAATNRVDILDPALLRSGRLDR--KIEF-PHPNEEARARIMQIHSR-KMNVSPDV 371
+ N V + L S + K F A R+ I + + V
Sbjct: 165 RFCLICNYVTRIIDP-LAS----QCSKFRFKALDASNAIDRLRFISEQENVKCDDGV 216
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 31.2 bits (70), Expect = 0.43
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFL 241
+ P +++ G G+GK+ + A A F+
Sbjct: 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 31.7 bits (73), Expect = 0.49
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 217 LYGPPGTGKTLLARACAAQTKSTFLKLA 244
L GPPG GKT LA++ A F++++
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRIS 140
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 30.8 bits (69), Expect = 0.50
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAP 272
+ V L GPPG GKT L + KS+ + + G + G ++ D L+ + P
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG-FYTEEVRQGGRRIGFDVVTLSGTRGP 60
Query: 273 -AIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS-STADIKVI 321
+ + ++ R ++ L +L D S + VI
Sbjct: 61 LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVI 111
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 31.7 bits (72), Expect = 0.52
Identities = 33/206 (16%), Positives = 68/206 (33%), Gaps = 61/206 (29%)
Query: 204 FVNLGIQPPKGVLLYGPPGTGKTLLARA--------------CAAQTKSTFLKLAGPQLV 249
+ +G++L GPPG+GKT++ + T + ++
Sbjct: 1259 IFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT-------EHIL 1311
Query: 250 QMFIGDGAKLVRDAFALAKEKAPA---IIFIDELDAIGTKRFDSEKAGDREVQRTMLELL 306
+ K+ ++F DE++ +K G + V + L
Sbjct: 1312 SALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLP-----KLDKYGSQNV----VLFL 1362
Query: 307 NQL---DGFSST--------ADIKVIAATN------RVDILDPALLRSGRLDRK---IEF 346
QL GF T I ++ A N R+ + S R R +
Sbjct: 1363 RQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPM-------SERFTRHAAILYL 1415
Query: 347 PHPNEEARARIMQ-IHSRKMNVSPDV 371
+P+ ++ ++I + + + P+
Sbjct: 1416 GYPSGKSLSQIYEIYYKAIFKLVPEF 1441
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 31.4 bits (72), Expect = 0.62
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTF 240
+LL G PG KTL A F
Sbjct: 49 ILLEGVPGLAKTLSVNTLAKTMDLDF 74
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein,
cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum
pernix} SCOP: b.40.4.5 d.51.1.1
Length = 235
Score = 30.8 bits (69), Expect = 0.65
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 7/123 (5%)
Query: 138 KPGDLV-----GVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIE 192
+ GD+V V ++ + + + Y A + + RP D ++ + I+
Sbjct: 65 QAGDVVIGLIQSVGIMNWFV--DINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIK 122
Query: 193 AVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMF 252
A V+ + G ++ G + S L ++F
Sbjct: 123 AKVVAFDKTRSPLLTVQGEGLGRIVRGKIVEISPAKVPRVIGRKMSMLKTLEEKTECKIF 182
Query: 253 IGD 255
+
Sbjct: 183 VAR 185
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 30.4 bits (68), Expect = 0.65
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFL 241
+L G G+GK+ +A A Q + FL
Sbjct: 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 31.0 bits (70), Expect = 0.67
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 202 EKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ 235
+ + P +LLYGP GTGK A
Sbjct: 27 KSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLES 59
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 31.0 bits (70), Expect = 0.67
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 202 EKFVNLGIQPPK--GVLLYGPPGTGKTLLARA 231
PK + GPP TGK++L +
Sbjct: 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNS 145
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 29.5 bits (66), Expect = 0.89
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 52 MRISHELQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTE 97
M H + E + IKV + +LV+ L+ DP E
Sbjct: 1 MHHHHHHSSGRENLYFQGG-IKVGDDKCFLVN-----LNADPALNE 40
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 29.9 bits (68), Expect = 0.92
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 217 LYGPPGTGKTLLARACAAQ 235
++G G GK+ L +A AQ
Sbjct: 41 VWGEEGAGKSHLLQAWVAQ 59
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 30.3 bits (68), Expect = 0.94
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 203 KFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG 245
+ + L+GP TGKT +A A A + G
Sbjct: 95 GWATKKFGKRNTIWLFGPATTGKTNIAEAIAH-----TVPFYG 132
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 30.7 bits (69), Expect = 1.0
Identities = 19/183 (10%), Positives = 58/183 (31%), Gaps = 23/183 (12%)
Query: 58 LQAQNEKIRENTEKIKVNKNLPYLVSNVIELLDVDPQDTEEDGAVVDLDAQRKGKCAVIK 117
+ + + ++ + + + L+ TE+ ++ + R + A
Sbjct: 3 CEIECRALSTAHTRLIHDFE----PRDALTYLEGKNIFTEDHSELISKMSTRLERIANFL 58
Query: 118 TSTRQ---------TYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPAEYDARVKAME 168
R+ +F A+ L+ +N+ L + ++ ++ +
Sbjct: 59 RIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRK 118
Query: 169 VDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLL 228
+ + + + +I+ K + + L+G G+GK+++
Sbjct: 119 LLLGNVPKQMTCYIREYHVDRVIK----------KLDEMCDLDSFFLFLHGRAGSGKSVI 168
Query: 229 ARA 231
A
Sbjct: 169 ASQ 171
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 30.4 bits (68), Expect = 1.1
Identities = 18/136 (13%), Positives = 48/136 (35%), Gaps = 11/136 (8%)
Query: 197 PMTHKEKFVN-------LGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL---AGP 246
P +++ F + L L+ G TGK+ + + + ++ L
Sbjct: 8 PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 67
Query: 247 QLVQMFIGDGAKLVRDAFALAKEKAPAII-FIDELDAIGTKRFDSEKAGDREVQRTMLEL 305
+ + D ++ ++ P+++ + + I + + +R+ + + L
Sbjct: 68 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANL 127
Query: 306 LNQLDGFSSTADIKVI 321
L + S I V+
Sbjct: 128 LESFEQASKDNVIIVL 143
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 30.4 bits (68), Expect = 1.2
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 202 EKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
+ + V + GP GTG T L +
Sbjct: 35 NIVMKAIKEKKHHVTINGPAGTGATTLTKF 64
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 30.6 bits (69), Expect = 1.3
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTK 237
P V +YG G GK++LA
Sbjct: 147 PGWVTIYGMAGCGKSVLAAEAVRDHS 172
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 29.7 bits (66), Expect = 1.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 216 LLYGPPGTGKTLLA 229
L+ G PG+GKTL
Sbjct: 9 LITGTPGSGKTLKM 22
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 29.5 bits (67), Expect = 1.6
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 208 GIQPPKGVLLYGPPGTGK-TLLARACAAQTKS 238
G P +YGP +GK TL + K
Sbjct: 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 29.9 bits (67), Expect = 1.9
Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 22/131 (16%)
Query: 215 VLLYGPPGTGKTL----LARACAAQTKSTFLKLAGP------QLVQMFIGDGAKLVRDAF 264
L+ GPPGTGKT+ + + K L A P L G K+VR
Sbjct: 378 SLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA-PSNVAVDHLAAKLRDLGLKVVR-LT 435
Query: 265 ALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSST--------- 315
A ++E + + L + + E +++ + EL
Sbjct: 436 AKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEI 495
Query: 316 -ADIKVIAATN 325
V+ T
Sbjct: 496 LNKADVVCCTC 506
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two
component system, AAA domain, NTRC family, DNA-binding;
HET: ATP; 3.0A {Salmonella typhimurium}
Length = 304
Score = 29.7 bits (68), Expect = 2.0
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 215 VLLYGPPGTGKTLLARA 231
VL++G GTGK L+ARA
Sbjct: 28 VLIHGDSGTGKELVARA 44
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 29.7 bits (66), Expect = 2.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTK 237
K +L G PG+GK+ AR A+
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNP 27
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54
activator, bacterial transcription, DIM transcription;
HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1
c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Length = 387
Score = 29.4 bits (67), Expect = 2.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 215 VLLYGPPGTGKTLLARA 231
VL+ G G GK ++AR
Sbjct: 163 VLITGESGVGKEVVARL 179
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP; 1.70A
{Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Length = 158
Score = 28.8 bits (65), Expect = 2.3
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 202 EKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
E + L + V L G G GKT L R
Sbjct: 23 EILLKLHTEKAIMVYLNGDLGAGKTTLTRG 52
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 28.8 bits (64), Expect = 2.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLA 244
+LL G PG GKT L + A+++ ++ +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINVG 43
>2bjv_A PSP operon transcriptional activator; AAA, transcription
activation, gene regulation, sigma54 activator, enhancer
binding protein, PSPF; 1.7A {Escherichia coli} PDB:
2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Length = 265
Score = 29.0 bits (66), Expect = 2.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 215 VLLYGPPGTGKTLLARA 231
VL+ G GTGK L+A
Sbjct: 32 VLIIGERGTGKELIASR 48
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 29.2 bits (64), Expect = 2.8
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 184 DKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243
DKQ + + + + +K ++ P LL G PG+GKT L A +T+ + +
Sbjct: 9 DKQFENRLNDNLEELIQGKK----AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVI 64
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 29.3 bits (65), Expect = 2.8
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 197 PMTHKEKFVN---------LGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFL 241
P T +E + ++ LL G GK+ L RA + +
Sbjct: 7 PKTRREDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILI 60
>1ou0_A Precorrin-8X methylmutase related protein; structural genomics,
PSI, protein structure initiative; 2.10A {Thermoplasma
acidophilum dsm 1728} SCOP: c.23.17.1
Length = 207
Score = 28.8 bits (64), Expect = 2.9
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 14/70 (20%)
Query: 339 RLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMI 398
+D I+ + IH+ + D L R +D F ++ +
Sbjct: 20 AIDSMIDPDISGPMRHIVVKAIHA-----AGDFAIAPLIRYSDGF---------FKSMLA 65
Query: 399 ALRRGAAIVT 408
L+ G I+
Sbjct: 66 KLKEGCTIIC 75
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+
ATPase, response regulator, transcriptional activator,
ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB:
1zit_A 2jrl_A
Length = 368
Score = 29.0 bits (66), Expect = 3.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 215 VLLYGPPGTGKTLLARA 231
VL+ G GTGK ++AR
Sbjct: 155 VLITGESGTGKEIVARL 171
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 29.2 bits (65), Expect = 3.3
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 215 VLLYGPPGTGKTL----LARACAAQTKSTFL-----KLAGPQLVQMFIGDGAKLVR 261
L+ GPPGTGKT+ + A Q L +A QL + G K+VR
Sbjct: 374 SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 429
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 28.7 bits (63), Expect = 3.4
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 14/77 (18%)
Query: 167 MEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKT 226
ME+ + ++ L + ++ L + P +LL G G GKT
Sbjct: 1 MEIQDYTDSEFKHA--LARNLRSLTRGKKSS------------KQPIAILLGGQSGAGKT 46
Query: 227 LLARACAAQTKSTFLKL 243
+ R + + + +
Sbjct: 47 TIHRIKQKEFQGNIVII 63
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 28.2 bits (63), Expect = 4.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTK 237
K +L G PG+GK+ AR A+
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNP 27
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 27.9 bits (62), Expect = 4.9
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 215 VLLYGPPGTGKTLLARA 231
++ GP TGK+ +
Sbjct: 61 LVFCGPANTGKSYFGMS 77
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 28.3 bits (63), Expect = 6.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 212 PKGVLLYGPPGTGKT 226
P+ +L+ G GTGK+
Sbjct: 53 PRHLLVNGATGTGKS 67
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
2gk7_A 2xzo_A* 2xzp_A
Length = 624
Score = 28.2 bits (63), Expect = 6.2
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 215 VLLYGPPGTGKTL----LARACAAQTKSTFL-----KLAGPQLVQMFIGDGAKLVR 261
L+ GPPGTGKT+ + A Q L +A QL + G K+VR
Sbjct: 198 SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 253
>3dnu_A Protein HIPA; persistence, MDT, multidrug resistance, unknown
function; 1.54A {Escherichia coli} PDB: 3dnt_A 3dnv_A*
3dnw_A* 3hzi_A* 2wiu_A 3fbr_A*
Length = 440
Score = 28.1 bits (62), Expect = 6.3
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 273 AIIFIDELDAIGTKRFDSEKAGDRE-VQRTMLELLNQLDGFSSTAD 317
II + A+ +RFD +R + R E + Q G S+
Sbjct: 221 EIIKAGNVRALAVERFDRRWNAERTVLLRLPQEDMCQTFGLPSSVK 266
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 27.9 bits (62), Expect = 7.1
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQTK 237
+G ++ P G+GKT +A A +
Sbjct: 110 RGCIV-LPTGSGKTHVAMAAINELS 133
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 27.4 bits (60), Expect = 7.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 215 VLLYGPPGTGKTLLARACAAQTK 237
+L+ G PGTGKT +A AA+
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELD 35
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 27.6 bits (62), Expect = 8.6
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 18/57 (31%)
Query: 87 ELLDVDPQDTEEDGAVVDLDAQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLV 143
+ VDP D A + + + LP + L + ++ G+ V
Sbjct: 86 VVTAVDPV---ADIATLRIQTKEP---------------LPTLPLGRSADVRQGEFV 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.369
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,620,864
Number of extensions: 422658
Number of successful extensions: 1486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1400
Number of HSP's successfully gapped: 177
Length of query: 431
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 335
Effective length of database: 4,021,377
Effective search space: 1347161295
Effective search space used: 1347161295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)