RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15151
(431 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 295 bits (758), Expect = 1e-99
Identities = 101/255 (39%), Positives = 155/255 (60%), Gaps = 1/255 (0%)
Query: 167 MEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKT 226
M +++ ++D+ G D+ +E+ E V + +F LG + PKGVL+ GPPGTGKT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKT 59
Query: 227 LLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTK 286
LLA+A A + K F ++G V+MF+G GA VRD F AK+ AP IIFIDE+DA+G +
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ 119
Query: 287 RFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEF 346
R G E ++T+ ++L ++DGF I VIAATNR D+LDPALLR GR DR++
Sbjct: 120 RGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 179
Query: 347 PHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAI 406
P+ R +I+++H R++ ++PD++ ++R T F+GA + EA + A R +
Sbjct: 180 GLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRV 239
Query: 407 VTHEDFMDAIMEVQA 421
V+ +F A ++
Sbjct: 240 VSMVEFEKAKDKIMM 254
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 291 bits (747), Expect = 4e-98
Identities = 104/246 (42%), Positives = 150/246 (60%), Gaps = 1/246 (0%)
Query: 171 ERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLAR 230
E P + D+ G ++ +EL E V + + +F +G + PKGVLL GPPG GKT LAR
Sbjct: 2 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 60
Query: 231 ACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS 290
A A + + F+ +G V+MF+G GA VRD F AK AP I+FIDE+DA+G KR
Sbjct: 61 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 120
Query: 291 EKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 350
G+ E ++T+ +LL ++DGF I V+AATNR DILDPALLR GR DR+I P+
Sbjct: 121 VGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 180
Query: 351 EEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHE 410
+ R +I++IH+R ++ DV+ L++ T F GA + + EA ++A R G +T +
Sbjct: 181 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 240
Query: 411 DFMDAI 416
D +A
Sbjct: 241 DLEEAA 246
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 230 bits (587), Expect = 7e-74
Identities = 95/244 (38%), Positives = 147/244 (60%)
Query: 173 PTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARAC 232
P + DIGGL+ +EL E V P+ H +KF+ G+ P KGVL YGPPG GKTLLA+A
Sbjct: 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 61
Query: 233 AAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEK 292
A + ++ F+ + GP+L+ M+ G+ VR+ F A++ AP ++F DELD+I R +
Sbjct: 62 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG 121
Query: 293 AGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEE 352
G R + ++L ++DG S+ ++ +I ATNR DI+DPA+LR GRLD+ I P P+E+
Sbjct: 122 DGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 181
Query: 353 ARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDF 412
+R I++ + RK V+ DV+ E L++ T+ F+GA +C A +A+R +
Sbjct: 182 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRER 241
Query: 413 MDAI 416
Sbjct: 242 ERQT 245
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 193 bits (490), Expect = 1e-59
Identities = 100/237 (42%), Positives = 148/237 (62%), Gaps = 3/237 (1%)
Query: 177 YSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQT 236
Y D+GG KQ+ ++ E V LP+ H F +G++PP+G+LLYGPPGTGKTL+ARA A +T
Sbjct: 3 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 62
Query: 237 KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDR 296
+ F + GP+++ G+ +R AF A++ APAIIFIDELDAI KR EK
Sbjct: 63 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGE 119
Query: 297 EVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARAR 356
+R + +LL +DG A + V+AATNR + +DPAL R GR DR+++ P+ R
Sbjct: 120 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 179
Query: 357 IMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFM 413
I+QIH++ M ++ DV+ E+++ T GA A+C EA + A+R+ ++ ED
Sbjct: 180 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 236
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 158 bits (401), Expect = 1e-45
Identities = 35/267 (13%), Positives = 79/267 (29%), Gaps = 30/267 (11%)
Query: 163 RVKAMEVDERPTEQYSDIGGLDKQIQELIEAVV--LPMTHKEKFVNLGIQPPKGVLL-YG 219
VKA + + G + + + + + L G + G+++ G
Sbjct: 73 SVKAEDGSVSVVQVE--NGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTG 130
Query: 220 PPGTGKTLLARACAAQT--KSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFI 277
+GKT L A K + + + + + D V D + +I I
Sbjct: 131 KGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRVIVI 188
Query: 278 DELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV---DILDPAL 334
D L + + +G R +LL+ + +++ VIA+ N D + +
Sbjct: 189 DSLKNVIGAAGGNTTSGGIS--RGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELV 246
Query: 335 LRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVE 394
+ R + + + +++ + + E
Sbjct: 247 KEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRL----------------THTLQTSYGE 290
Query: 395 AGMIALRRGAAIVTHEDFMDAIMEVQA 421
++ + + AI V
Sbjct: 291 HSVLTIHTSKQSGGKQASGKAIQTVIK 317
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 114 bits (285), Expect = 7e-30
Identities = 39/247 (15%), Positives = 87/247 (35%), Gaps = 18/247 (7%)
Query: 179 DIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKS 238
I + +++ L + ++ N P VLL GPP +GKT LA A ++
Sbjct: 10 GIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF 66
Query: 239 TFLKLAGPQLVQMFIG-DGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDRE 297
F+K+ P + F + ++ F A + + + +D+++ + + +
Sbjct: 67 PFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLV 126
Query: 298 VQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARI 357
+Q ++ + +I T+R D+L + I PN ++
Sbjct: 127 LQALLVL---LKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHV--PNIATGEQL 180
Query: 358 MQIHSRKMNVSPDVNYEELSRSTDD---FNGAQCKAVCVEAGMIALRRGAAIVTHEDFMD 414
++ N D +++ + G + + +E + F+
Sbjct: 181 LEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRV----RKFLA 235
Query: 415 AIMEVQA 421
+ E A
Sbjct: 236 LLREEGA 242
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 113 bits (283), Expect = 1e-28
Identities = 34/250 (13%), Positives = 57/250 (22%), Gaps = 27/250 (10%)
Query: 183 LDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLK 242
L + ++ V + I + L GP +GKT LA A L
Sbjct: 129 LHCLLPKMDSVVYDFLKCMVY----NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 184
Query: 243 LAGPQLVQMF-IGDGAKLVRDAFALAK------EKAPAIIFIDELDAIGTKRFDSEKAGD 295
+ P F +G F K P+ I+ LD + S K
Sbjct: 185 VNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNL 244
Query: 296 REVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEAR- 354
+ + I N R ++I+F +
Sbjct: 245 EKKHLNKRTQIFPP----------GIVTMNE---YSVPKTLQARFVKQIDFRPKDYLKHC 291
Query: 355 ARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMD 414
+ K + L A+ + R + +
Sbjct: 292 LERSEFLLEKRII--QSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVYQK 349
Query: 415 AIMEVQAKKK 424
V
Sbjct: 350 MKFNVAMGIG 359
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 108 bits (269), Expect = 2e-27
Identities = 22/228 (9%), Positives = 59/228 (25%), Gaps = 16/228 (7%)
Query: 207 LGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQM---FIGDGAKLVRDA 263
++ P LL G PG+GKT L A +T+ + + Q F +D
Sbjct: 27 KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDV 86
Query: 264 FALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL--------LNQLDGFSST 315
+ + + R + ++ +
Sbjct: 87 VKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP 146
Query: 316 ADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEE 375
+ R + + + R K + + +H + +
Sbjct: 147 KINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRL---Y 203
Query: 376 LSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTHEDFMDAIMEVQAKK 423
++ + ++ + + V+ ++ + ++ K
Sbjct: 204 NREGVKLYSSLETPSISPKETLEKELNRK--VSGKEIQPTLERIEQKM 249
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 91.0 bits (224), Expect = 2e-21
Identities = 33/261 (12%), Positives = 68/261 (26%), Gaps = 30/261 (11%)
Query: 182 GLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ----TK 237
++Q+Q+L + ++ L G PGTGKT+ R T
Sbjct: 20 HREQQLQQLDILL-------GNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT 72
Query: 238 STFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDRE 297
+ F+ + G G + F+ L +R +
Sbjct: 73 ARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDD 132
Query: 298 VQR------TMLELLNQLDGFSSTADIKVIAATNRVDILDPALLR--SGRLDRKIEFPHP 349
+ L Q I ++ + +L+ I F
Sbjct: 133 AFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPY 192
Query: 350 NEEARARIMQIHSRK---MNVSPDVNYEELSRSTDDFNGAQCKA--------VCVEAGMI 398
++ I+ ++ + + ++ T + +
Sbjct: 193 TKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 252
Query: 399 ALRRGAAIVTHEDFMDAIMEV 419
A + G + ED + EV
Sbjct: 253 AQQNGRKHIAPEDVRKSSKEV 273
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 86.9 bits (214), Expect = 3e-20
Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 20/247 (8%)
Query: 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
RP + G ++ Q+L + KE P + +LL+GPPG GKT LA
Sbjct: 4 RPK-TLDEYIGQERLKQKLRVYLEAAKARKE--------PLEHLLLFGPPGLGKTTLAHV 54
Query: 232 CAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSE 291
A + +GP + + A + I+FIDE+ + + +
Sbjct: 55 IAHELGVNLRVTSGPAIEK-------PGDLAAILANSLEEGDILFIDEIHRLSRQAEEHL 107
Query: 292 KAG--DREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHP 349
D + + + +I AT R ++ LL + +E+ P
Sbjct: 108 YPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTP 167
Query: 350 NEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTH 409
E A+ + + ++ + E RS K + A G ++T
Sbjct: 168 EELAQGVMRDARLLGVRITEEAALEIGRRSRGT--MRVAKRLFRRVRDFAQVAGEEVITR 225
Query: 410 EDFMDAI 416
E ++A+
Sbjct: 226 ERALEAL 232
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 79.4 bits (194), Expect = 3e-17
Identities = 35/293 (11%), Positives = 78/293 (26%), Gaps = 52/293 (17%)
Query: 165 KAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTG 224
+ + + P E + + + L + + ++ + G G G
Sbjct: 7 RVFDENYIPPE----LRVRRGEAEALARIYLNRLLSGAGLSDVNM----IYGSIGRVGIG 58
Query: 225 KTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFAL------------------ 266
KT LA+ + K A + +L
Sbjct: 59 KTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALD 118
Query: 267 ---------AKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTAD 317
E ++ +DE ++ + + E T+L + ++
Sbjct: 119 ILKALVDNLYVENHYLLVILDEFQSMLSSPRIA-----AEDLYTLLRVHEEIPSRDGVNR 173
Query: 318 IKVIAATNRVDILDPALLRSGRL--DRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEE 375
I + + V L + ++ + P ++R + R D +E
Sbjct: 174 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEP 233
Query: 376 -----LSRSTDDFNGAQCKA-----VCVEAGMIALRRGAAIVTHEDFMDAIME 418
+S + G A A +A G ++ + A+ E
Sbjct: 234 RHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 286
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 75.6 bits (185), Expect = 7e-16
Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 20/203 (9%)
Query: 182 GLDKQIQELIEAVVLPMTH-KEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTF 240
G + + A+ + + PK +L+ GP G GKT +AR A + F
Sbjct: 18 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 77
Query: 241 LKLAGPQLVQMFIG--DGAKLVRDAFALAKE-----KAPAIIFIDELDAIGTKRFDSEKA 293
+K+ + ++ + ++RD A + I+FIDE+D I K S
Sbjct: 78 IKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--G 135
Query: 294 GDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRS----------GRLDRK 343
D + +LL ++G + + ++ + + I A + GRL +
Sbjct: 136 ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 195
Query: 344 IEFPHPNEEARARIMQIHSRKMN 366
+E + RI+ +
Sbjct: 196 VELTALSAADFERILTEPHASLT 218
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 62.7 bits (151), Expect = 7e-12
Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 21/247 (8%)
Query: 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
RP + G + ++L A+ E VLL GPPG GKT LA
Sbjct: 4 RPK-SLDEFIGQENVKKKLSLALEAAKMRGE--------VLDHVLLAGPPGLGKTTLAHI 54
Query: 232 CAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDS- 290
A++ ++ +GP LV K A L + ++FIDE+ + +
Sbjct: 55 IASELQTNIHVTSGPVLV--------KQGDMAAILTSLERGDVLFIDEIHRLNKAVEELL 106
Query: 291 -EKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHP 349
D ++ + + + ++ AT R +L L + +++F +
Sbjct: 107 YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDF-YT 165
Query: 350 NEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVTH 409
+E + I + S D E +++ + + + A +
Sbjct: 166 VKELKEIIKRAASLMDVEIEDAAAEMIAKRS-RGTPRIAIRLTKRVRDMLTVVKADRINT 224
Query: 410 EDFMDAI 416
+ + +
Sbjct: 225 DIVLKTM 231
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 50.2 bits (118), Expect = 1e-07
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 172 RPTEQYSDIGGLDKQIQELIEAVV-LPMTHKEKFVNLGIQ---PPKGVLLYGPPGTGKTL 227
PT + G + +L + + K F + G + +LYGPPG GKT
Sbjct: 9 APT-NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTT 67
Query: 228 LARACAAQTKSTFLKLAGPQLVQMFIGDGA 257
A A + L+ + + +
Sbjct: 68 AAHLVAQELGYDILEQNASDVRSKTLLNAG 97
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 46.9 bits (110), Expect = 2e-06
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
RP +S I G + L+ V P GVL++G GTGK+ RA
Sbjct: 1 RPVFPFSAIVGQEDMKLALLLTAVDPGIG-------------GVLVFGDRGTGKSTAVRA 47
Query: 232 CAA 234
AA
Sbjct: 48 LAA 50
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 43.7 bits (103), Expect = 2e-05
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 29/130 (22%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAK----LVRDAFALAKEK 270
VL+ G G GK ++AR + + + + + AF A
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 271 APAI--------IFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ------LDGFSSTA 316
+F+DE+ + E Q +L ++
Sbjct: 86 KEGFFELADGGTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIEV 134
Query: 317 DIKVIAATNR 326
+++++AATNR
Sbjct: 135 NVRILAATNR 144
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 43.2 bits (101), Expect = 4e-05
Identities = 32/166 (19%), Positives = 56/166 (33%), Gaps = 10/166 (6%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 271
PK +L+ GP G GKT +AR A + F+K+ + ++ G K V + A
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV--GYVGKEVDSIIRDLTDSA 106
Query: 272 PAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILD 331
++ E+ +A D +R + LL + ++ R
Sbjct: 107 MKLVRQQEIAKNR------ARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRK 160
Query: 332 PALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELS 377
LR G+LD K + + + M +
Sbjct: 161 --KLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQ 204
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 42.1 bits (97), Expect = 6e-05
Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 18/150 (12%)
Query: 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
RP + + ++ L + + P +LLYGP GTGK A
Sbjct: 6 RPKS-LNALSHNEELTNFL-----------KSLSDQPRDLPH-LLLYGPNGTGKKTRCMA 52
Query: 232 CAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSE 291
+ + Q KL + + +P + I D R +
Sbjct: 53 LLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS-----SPYHLEITPSDMGNNDRIVIQ 107
Query: 292 KAGDREVQRTMLELLNQLDGFSSTADIKVI 321
+ Q ++ + DG + +I
Sbjct: 108 ELLKEVAQMEQVDFQDSKDGLAHRYKCVII 137
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 39.7 bits (91), Expect = 4e-04
Identities = 16/123 (13%), Positives = 42/123 (34%), Gaps = 11/123 (8%)
Query: 197 PMTHKEKFVN-------LGIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLV 249
P +++ F + L L+ G TGK+ + + + ++ L +
Sbjct: 7 PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 66
Query: 250 QM----FIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLEL 305
+ + +L ++ L K + + + I + + +R+ + + L
Sbjct: 67 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANL 126
Query: 306 LNQ 308
L
Sbjct: 127 LES 129
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 38.1 bits (88), Expect = 0.001
Identities = 46/209 (22%), Positives = 70/209 (33%), Gaps = 42/209 (20%)
Query: 182 GLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACA-------- 233
G +K+++ I+ L + LL G G GKT +A A
Sbjct: 22 GREKELERAIQV-------------LCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDV 68
Query: 234 ----AQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFD 289
A L + + GD K + ++ +I+FIDE+ I
Sbjct: 69 PEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA 128
Query: 290 SEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATN----RVDIL-DPALLRSGRLDRKI 344
S D N + S+ I+VI +T D AL R R +KI
Sbjct: 129 SGGQVD---------AANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALAR--RF-QKI 176
Query: 345 EFPHPNEEARARIMQIHSRKMNVSPDVNY 373
+ P+ E +I+ K DV Y
Sbjct: 177 DITEPSIEETVQIINGLKPKYEAHHDVRY 205
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 36.6 bits (83), Expect = 0.003
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQ 235
+L+ PG G L A +
Sbjct: 24 HHALLIQALPGMGDDALIYALSRY 47
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 37.1 bits (85), Expect = 0.003
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI------GDGAKLVRDAF 264
+LL GP G+GKTL+A+ A L + +L++ +
Sbjct: 67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 126
Query: 265 ALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 311
++ I+FIDE+D I + D + LL ++G
Sbjct: 127 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEG 173
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 35.8 bits (81), Expect = 0.005
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAG 245
+ V L GPPG GKT L + KS+ + + G
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 35.9 bits (81), Expect = 0.006
Identities = 9/61 (14%), Positives = 16/61 (26%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALA 267
GI+ +G TGKT L+ + + + +A
Sbjct: 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIA 92
Query: 268 K 268
Sbjct: 93 D 93
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 35.4 bits (80), Expect = 0.006
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDG 256
K V + G +GK++L AA +T G + V +G
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD 51
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 35.5 bits (81), Expect = 0.008
Identities = 40/232 (17%), Positives = 70/232 (30%), Gaps = 53/232 (22%)
Query: 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
RP ++D+ G + + L + L + L G G GKT +AR
Sbjct: 7 RPQ-TFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARL 53
Query: 232 CAAQTKSTFLKLAGP-------------QLVQMFIGDGAKL-----VRDAFALAKEKAPA 273
A A P + V + D A RD +
Sbjct: 54 LAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 113
Query: 274 ----IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDI 329
+ IDE+ + F++ LL L+ +K + AT
Sbjct: 114 GRFKVYLIDEVHMLSRHSFNA--------------LLKTLEEPPEH--VKFLLATTDPQK 157
Query: 330 LDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTD 381
L +L R + E+ R ++ I + + + L+R+ +
Sbjct: 158 LPVTILS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 207
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 34.2 bits (77), Expect = 0.016
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGA 257
+LL G PG+GK+ +A A A + L
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRI 49
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 34.1 bits (77), Expect = 0.021
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235
G +L G GTGKTLL
Sbjct: 22 GFFKDSIILATGATGTGKTLLVSRFVEN 49
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 34.0 bits (76), Expect = 0.021
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235
GI+ ++G TGKT + A
Sbjct: 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 33.5 bits (76), Expect = 0.025
Identities = 3/28 (10%), Positives = 9/28 (32%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLK 242
+L+ G + ++ + K
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPK 45
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 33.9 bits (76), Expect = 0.027
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAK 258
G++ G G+GKT + ++ + V K
Sbjct: 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPK 80
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 33.9 bits (76), Expect = 0.027
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235
+ L P G GK++LA AAQ
Sbjct: 25 NMVAGTVGALVSPGGAGKSMLALQLAAQ 52
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 33.5 bits (75), Expect = 0.032
Identities = 12/61 (19%), Positives = 21/61 (34%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALA 267
GI+ ++G G+GKT LA A + + V + +A
Sbjct: 32 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA 91
Query: 268 K 268
+
Sbjct: 92 Q 92
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 33.4 bits (75), Expect = 0.034
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235
G+ + L+ G GTGKTL +
Sbjct: 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYN 49
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 33.2 bits (74), Expect = 0.046
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235
G++ L+G TGK+ L A
Sbjct: 30 GVETGSITELFGEFRTGKSQLCHTLAVT 57
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 32.7 bits (73), Expect = 0.048
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIG 254
+ ++L G GK+ + R + +L L++
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL 45
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 31.8 bits (71), Expect = 0.089
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 211 PPKGVLLYGPPGTGKTLLARACAAQTKSTF 240
P+ V+ G PG GK+ +
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVH 42
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 30.9 bits (68), Expect = 0.18
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243
+ + L GP G GK+ + R A Q F
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 30.5 bits (67), Expect = 0.19
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFL 241
K +L G PG+GK+ AR A+ +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYN 31
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 31.2 bits (69), Expect = 0.24
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 208 GIQPPKGVLLYGPPGTGKTLLARACAAQ 235
G + + +++ G GK+ R A Q
Sbjct: 31 GARGGEVIMVTSGSGMGKSTFVRQQALQ 58
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 30.4 bits (67), Expect = 0.24
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 210 QPPKG--VLLYGPPGTGKTLLARACAAQTKSTF 240
+ PKG +L+ G PGTGKT +A AA+
Sbjct: 1 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQ 33
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 30.3 bits (68), Expect = 0.25
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQ------TKSTFLKLAGPQLV 249
GVLL G G GK+ A + + + G +L
Sbjct: 16 VGVLLTGRSGIGKSECALDLINKNHLFVGDDAIEIYRLGNRLF 58
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 30.4 bits (67), Expect = 0.25
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFL 241
+L G G+GK+ +A A Q + FL
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFL 35
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 30.0 bits (66), Expect = 0.36
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTF 240
V L G G GKT ++ A
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHG 47
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 30.1 bits (66), Expect = 0.39
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLK 242
+ L G +GK +ARA +
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLNQQGGR 36
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 29.4 bits (65), Expect = 0.40
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 215 VLLYGPPGTGKTL-LARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAF 264
L+ P G+GK+ + A AAQ + F + A
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGF----GAYMSKAH 57
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 29.6 bits (65), Expect = 0.42
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243
PK VL+ G PG+GK+ + R A L
Sbjct: 2 PKAVLV-GLPGSGKSTIGRRLAKALGVGLLDT 32
>d1f2va_ c.23.17.1 (A:) Precorrin-8x methylmutase {Pseudomonas
denitrificans [TaxId: 43306]}
Length = 209
Score = 29.8 bits (67), Expect = 0.46
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 14/62 (22%)
Query: 347 PHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAI 406
EEA + +H+ V + DF V + AL+ GA I
Sbjct: 28 RFSEEEADLAVRMVHA-----CGSVEATRQFVFSPDF---------VSSARAALKAGAPI 73
Query: 407 VT 408
+
Sbjct: 74 LC 75
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 29.9 bits (66), Expect = 0.58
Identities = 26/168 (15%), Positives = 43/168 (25%), Gaps = 14/168 (8%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQ------------TKSTFLKLAGPQLVQMFI-GDGAK 258
P+ +L+ G GTGK++L R A L G + D
Sbjct: 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQRT 109
Query: 259 LVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADI 318
F + + + G E A + L G S ++
Sbjct: 110 KGWSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTPSMREL 169
Query: 319 KVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMN 366
D L L + + +A + S K+
Sbjct: 170 FHWTTIATFDDLRG-FLEGTLAESLFAGSNEASKALTSARFVLSDKLP 216
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 29.4 bits (65), Expect = 0.69
Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 176 QYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQ 235
+ + + +I+ K + + L+G G+GK+++A ++
Sbjct: 18 KQMTCYIREYHVDRVIK----------KLDEMCDLDSFFLFLHGRAGSGKSVIASQALSK 67
Query: 236 TK 237
+
Sbjct: 68 SD 69
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 29.2 bits (64), Expect = 0.72
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243
+ + + G G G T + R A F+
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33
>d1ou0a_ c.23.17.1 (A:) Precorrin-8x methylmutase related protein
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 190
Score = 29.0 bits (65), Expect = 0.72
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 16/64 (25%)
Query: 345 EFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGA 404
+ P + IH+ + D L R +D F ++ + L+ G
Sbjct: 12 DISGPMRHIVVKA--IHA-----AGDFAIAPLIRYSDGF---------FKSMLAKLKEGC 55
Query: 405 AIVT 408
I+
Sbjct: 56 TIIC 59
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 29.3 bits (65), Expect = 0.72
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 206 NLGIQPPKGVLLYGPPGTGKT----LLARACAAQTKSTFL 241
N+ + P +L+ G G GKT LAR Q KS L
Sbjct: 3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 42
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 29.3 bits (64), Expect = 0.73
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 14/64 (21%)
Query: 172 RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
RP ++ D + L + + ++ L YGPPGTGKT A
Sbjct: 7 RPK-NLDEVTAQDHAVTVLKKTL-----KSANLPHM--------LFYGPPGTGKTSTILA 52
Query: 232 CAAQ 235
+
Sbjct: 53 LTKE 56
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 29.3 bits (65), Expect = 0.75
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 202 EKFVNLGIQPPKGVLLYGPPGTGKT----LLARACAAQTKSTFL 241
+ +N+ +PP +++ G GTGKT LA+ + KS L
Sbjct: 1 DTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL 44
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.8 bits (64), Expect = 0.75
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQ 235
GVL+ G G GK+ A +
Sbjct: 16 VGVLITGDSGIGKSETALELIKR 38
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 29.2 bits (64), Expect = 0.76
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTKSTFLK 242
P +++ G P GKT +++ +
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVP 32
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 29.0 bits (64), Expect = 0.83
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 210 QPPKGVLLYGPPGTGKTLLARACAAQ 235
Q + L G +GK+ LA Q
Sbjct: 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 29.2 bits (64), Expect = 0.83
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 4/97 (4%)
Query: 212 PKGVLLYGPPGTGKTLLARACAAQTK----STFLKLAGPQLVQMFIGDGAKLVRDAFALA 267
P V + G PG+GK S L Q G+ + +
Sbjct: 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV 65
Query: 268 KEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLE 304
+ + +DA K F + E E
Sbjct: 66 PSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWE 102
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 28.9 bits (64), Expect = 0.86
Identities = 26/153 (16%), Positives = 41/153 (26%), Gaps = 29/153 (18%)
Query: 212 PKGVLLYGPPGTGKT----LLARACAAQTKSTFLKLAGPQ-------------------L 248
+ VL+ G G GKT L R K +
Sbjct: 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVI 65
Query: 249 VQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 308
D A L DA K + ++F+D T K E + + + +
Sbjct: 66 QGPEGTDPAALAYDAVQAMKARGYDLLFVD------TAGRLHTKHNLMEELKKVKRAIAK 119
Query: 309 LDGFSSTADIKVIAATNRVDILDPALLRSGRLD 341
D V+ A + L+ A +
Sbjct: 120 ADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG 152
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 28.7 bits (64), Expect = 0.93
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQ 235
GVL+ G G GK+ A +
Sbjct: 15 LGVLITGDSGVGKSETALELVQR 37
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 29.1 bits (65), Expect = 1.0
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 150 YLILETLPAEY-DARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLG 208
+ L +Y + ++ + L+ + A + +
Sbjct: 50 IMSLTKTAPDYLVGQQPVEDISSNRIYKI-----LELNGYDPQYA----ASVFLGWATKK 100
Query: 209 IQPPKGVLLYGPPGTGKTLLARACAA 234
+ L+GP TGKT +A A A
Sbjct: 101 FGKRNTIWLFGPATTGKTNIAEAIAH 126
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 28.3 bits (62), Expect = 1.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQTKSTFLKL 243
K ++ G G+GK+ LARA A FL
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDS 31
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 28.5 bits (62), Expect = 1.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFL 241
++ GP G GK+ + AAQ ++
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAY 31
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 28.6 bits (64), Expect = 1.1
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 215 VLLYGPPGTGKTLLARACA 233
++ GP TGK+ +
Sbjct: 56 LVFCGPANTGKSYFGMSFI 74
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 28.4 bits (62), Expect = 1.2
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 212 PKGV--LLYGPPGTGKTLLAR 230
PKGV +L GPPG GK A
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAP 21
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.1 bits (61), Expect = 1.3
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 215 VLLYGPPGTGKTLLA 229
+L PG GKT
Sbjct: 10 TVLDFHPGAGKTRRF 24
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 28.1 bits (62), Expect = 1.3
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 202 EKFVNLGIQPPKGVLLYGPPGTGKTLLARACA 233
E + L + V L G G GKT L R
Sbjct: 23 EILLKLHTEKAIMVYLNGDLGAGKTTLTRGML 54
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 28.0 bits (61), Expect = 1.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFL 241
+LL G PG GKT L + A+++ ++
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYI 33
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.0 bits (61), Expect = 1.7
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKST 239
+++ G PG GKT L + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR 27
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 27.6 bits (60), Expect = 2.1
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 209 IQPPKGVLLYGPPGTGKTLLAR 230
++ K + + G PG+GK
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCE 26
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.5 bits (60), Expect = 2.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 213 KGVLLYGPPGTGKTLLARACAAQTKSTF 240
K ++L G G G+ + + F
Sbjct: 4 KTLVLLGAHGVGRRHIKNTLITKHPDRF 31
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 27.6 bits (60), Expect = 2.2
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 212 PKGVLLYGPPGTGKTLLAR 230
P V + G PG GK
Sbjct: 1 PLVVFVLGGPGAGKGTQCA 19
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.6 bits (60), Expect = 2.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTF 240
+++ GP GTGK+ L + A+ +F
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 27.2 bits (59), Expect = 2.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTF 240
V+L GP G GK+ L + + S F
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIF 28
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 27.6 bits (60), Expect = 2.9
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 19/79 (24%)
Query: 163 RVKAMEVDERP-TEQY-----SDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVL 216
++ ++V E+P E+Y DI G + ++ L V +L L
Sbjct: 3 EIREVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYV-----KTGSMPHL--------L 49
Query: 217 LYGPPGTGKTLLARACAAQ 235
GPPG GKT A A A +
Sbjct: 50 FAGPPGVGKTTAALALARE 68
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 27.6 bits (61), Expect = 2.9
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARACA 233
+ ++P + L GP G+GK+ +A
Sbjct: 33 LTFTLRPGEVTALVGPNGSGKSTVAALLQ 61
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 27.2 bits (59), Expect = 3.1
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 211 PPKGVLLYGPPGTGKTLLAR 230
P V++ G P +GK
Sbjct: 2 DPLKVMISGAPASGKGTQCE 21
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 27.4 bits (60), Expect = 3.2
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 209 IQPPKGVLLYGPPGTGKT----LLARACAAQTKSTFLKLAGPQLVQMF 252
++ L G G+GKT LA + + L A Q
Sbjct: 7 LKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR 54
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 27.1 bits (60), Expect = 3.3
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARACA 233
++ QP + GP G GK+ +
Sbjct: 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.0 bits (59), Expect = 3.6
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 210 QPPKGVLLYGPPGTGKT----LLARACAAQTKSTFLKLAGPQLVQMF 252
+ P ++L G GTGK LA + L A
Sbjct: 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAAL 56
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 27.4 bits (60), Expect = 3.7
Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 21/99 (21%)
Query: 175 EQYSDIGGLDKQIQ-ELIEAVVLPMTH-------------KEKFVNLGIQPPKG---VLL 217
++ + + G+++ + E + + LP++ LG + + +
Sbjct: 26 DEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISI 85
Query: 218 YGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDG 256
G GK+ AR A + + V++ DG
Sbjct: 86 AGSVAVGKSTTARVLQAL----LSRWPEHRRVELITTDG 120
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 26.9 bits (58), Expect = 3.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFL 241
+ + GP G GK L +A A + L
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWHLL 32
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.2 bits (59), Expect = 3.7
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 215 VLLYGPPGTGKTL 227
++ PG GKT
Sbjct: 12 TIMDLHPGAGKTK 24
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 27.1 bits (60), Expect = 4.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARACA 233
+NL I K V L G G+GK+ +A
Sbjct: 34 INLKIPAGKTVALVGRSGSGKSTIASLIT 62
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 26.8 bits (59), Expect = 4.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST 239
+ + I+ V +GP G GKT L + + K
Sbjct: 20 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 54
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 26.8 bits (58), Expect = 4.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFL 241
++L GPPG GK A + + L
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHL 31
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 26.9 bits (59), Expect = 4.7
Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 30/176 (17%)
Query: 215 VLLYGPPGTGKTLLARACA------------AQTKSTFLKLAGPQLVQMFIGDGAKLVRD 262
+L G PG GKT + A + L++ + G+ + ++
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 105
Query: 263 AF-ALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVI 321
+ + + I+FIDEL + AG E ++ N L + ++++I
Sbjct: 106 VIQEVVQSQGEVILFIDELHTVV-------GAGKAEGA---VDAGNMLKPALARGELRLI 155
Query: 322 AATN----RVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNY 373
AT R DPAL R R + + P E I++ K V V
Sbjct: 156 GATTLDEYREIEKDPALER--RF-QPVYVDEPTVEETISILRGLKEKYEVHHGVRI 208
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 26.8 bits (59), Expect = 4.7
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST 239
V+L + + + G G GK+ L R + T
Sbjct: 24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT 58
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 26.8 bits (59), Expect = 4.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARACA 233
+NL I+ + + + G G+GKT L
Sbjct: 55 INLNIEKGEMLAITGSTGSGKTSLLMLIL 83
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.0 bits (58), Expect = 4.7
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 204 FVNLGIQPPKGV-LLYGPPGTGKTLLARACA 233
+ ++ +G+ L+ G G+GK+ L A
Sbjct: 14 HSDTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 26.4 bits (57), Expect = 4.8
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLK 242
++L G P GK A+ + +
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQIS 30
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 26.7 bits (58), Expect = 4.9
Identities = 21/167 (12%), Positives = 53/167 (31%), Gaps = 16/167 (9%)
Query: 210 QPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKE 269
+ +YG GTGKT L +A + K ++ L + +
Sbjct: 34 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRN 93
Query: 270 K--APAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRV 327
+ ++ +D++ + +G Q + N + I + + +
Sbjct: 94 MYKSVDLLLLDDVQFL---------SGKERTQIEFFHIFNT--LYLLEKQIILASDRHPQ 142
Query: 328 DIL-DPALLRSGRLDRKIEFPHPNEEARARIMQ--IHSRKMNVSPDV 371
+ L S + + + R +I++ + + + +V
Sbjct: 143 KLDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEV 189
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.5 bits (57), Expect = 4.9
Identities = 15/127 (11%), Positives = 31/127 (24%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAI 274
+ GTGKT L + + ++ + + A I
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTI 64
Query: 275 IFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTADIKVIAATNRVDILDPAL 334
+ + A+ T+ D E+ + + M L ++ D
Sbjct: 65 VASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRP 124
Query: 335 LRSGRLD 341
Sbjct: 125 EELVIDR 131
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 26.7 bits (59), Expect = 5.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARACA 233
VNL I+ + V + GP G+GK+ +
Sbjct: 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIG 52
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 26.6 bits (58), Expect = 5.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARACA 233
VN+ I+ + + GP G GKT R A
Sbjct: 24 VNINIENGERFGILGPSGAGKTTFMRIIA 52
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 26.8 bits (58), Expect = 5.8
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 13/111 (11%)
Query: 163 RVKAMEVDE-RPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPP 221
A+EVDE + + + +I A + +T + ++ G P
Sbjct: 125 VNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRI------------SVISGGP 172
Query: 222 GTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAP 272
GTGKT A + G A + ++ A + P
Sbjct: 173 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP 223
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 26.7 bits (58), Expect = 6.2
Identities = 41/255 (16%), Positives = 75/255 (29%), Gaps = 40/255 (15%)
Query: 180 IGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARACAAQTKST 239
+ G DK I+ L EA+ + + +P L GP G GKT + +
Sbjct: 24 VFGQDKAIEALTEAI---KMARAGLGHEH-KPVGSFLFAGPTGVGKTEVTVQLSKALGIE 79
Query: 240 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDA-IGTKRFDSEKAGDREV 298
L+ + M ++L+ ++ + D + +V
Sbjct: 80 LLRFDMSEY--MERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDV 137
Query: 299 QRTMLELLNQL---DG------FSSTADIKVIAATNRV---------------------- 327
+L++++ D F + + A R
Sbjct: 138 FNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIK 197
Query: 328 DILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQ 387
I P RLD I F H + + +++ ++ V D L S + N
Sbjct: 198 KIFTPEFR--NRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLA 255
Query: 388 CKAVCVEAGMIALRR 402
K G + R
Sbjct: 256 EKGYDRAMGARPMAR 270
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 26.3 bits (58), Expect = 6.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARACA 233
+NL I+ + ++L GP G GKT R A
Sbjct: 25 LNLTIKDGEFLVLLGPSGCGKTTTLRMIA 53
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.6 bits (58), Expect = 6.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARACA 233
++L ++ + ++ GP G GKTL A
Sbjct: 19 LSLKVESGEYFVILGPTGAGKTLFLELIA 47
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 26.3 bits (58), Expect = 6.5
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARACA 233
+NL I+ + V G G GK+ L
Sbjct: 37 INLSIEKGETVAFVGMSGGGKSTLINLIP 65
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.0 bits (56), Expect = 7.2
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 215 VLLYGPPGTGKTLLARACAAQTKSTFLKLA 244
++ P G GK+ L +A +++
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVS 34
>d1v9ca_ c.23.17.1 (A:) Precorrin-8x methylmutase {Thermus
thermophilus [TaxId: 274]}
Length = 204
Score = 26.0 bits (57), Expect = 7.3
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 14/60 (23%)
Query: 349 PNEEARARIMQIHSRKMNVSPDVNYEELSRSTDDFNGAQCKAVCVEAGMIALRRGAAIVT 408
E IH+ + D Y+ L+R + VEAG+ A++ GA I+
Sbjct: 21 SPLEWPVVRRMIHA-----TADFEYKALTRFSQGA---------VEAGLKAIQAGARILV 66
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 26.0 bits (57), Expect = 7.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARA 231
+NL I+ + + + G G+GK+ L +
Sbjct: 22 INLSIKQGEVIGIVGRSGSGKSTLTKL 48
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 26.0 bits (57), Expect = 7.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARACA 233
++L ++ + ++L GP G GKT R A
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIA 50
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 26.0 bits (56), Expect = 7.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 215 VLLYGPPGTGKTLLAR 230
VLL GPPG GK A
Sbjct: 3 VLLLGPPGAGKGTQAV 18
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 25.9 bits (55), Expect = 7.5
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 10/49 (20%)
Query: 183 LDKQIQELIEAVVLPMTHKEKFVNLGIQPPKGVLLYGPPGTGKTLLARA 231
L +I L + + L + + V + + G +GKT LA
Sbjct: 3 LRDRIDFLCKTI-LAIKTAGRLV---------LGIDGLSRSGKTTLANQ 41
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 26.1 bits (57), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 205 VNLGIQPPKGVLLYGPPGTGKTLLARACA 233
+NL I + V+ GP G GK+ L R A
Sbjct: 19 INLDIHEGEFVVFVGPSGCGKSTLLRMIA 47
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 26.2 bits (58), Expect = 7.8
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 169 VDERP---TEQYSDIGGLDKQIQELIEAVVLPMTHKEKFVNLGIQPPKG--VLLYGPPGT 223
+DER T+Q++ I + E+ + K V+L KG + L+G G
Sbjct: 21 IDERGPIKTKQFAAIHAEAPEFVEM-SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV 79
Query: 224 GKTLLARACAAQTK 237
GKT+L
Sbjct: 80 GKTVLIMELINNVA 93
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 26.0 bits (56), Expect = 8.7
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 215 VLLYGPPGTGKTLLAR 230
+ G PG+GK ++
Sbjct: 9 AAIMGAPGSGKGTVSS 24
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 25.7 bits (56), Expect = 9.0
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 205 VNLGIQPPKGVL-LYGPPGTGKTLLARACA 233
+N+ + + L GP G GK++ A
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIA 45
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 25.6 bits (55), Expect = 9.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 215 VLLYGPPGTGKTLLAR 230
++L G PG GK A
Sbjct: 3 LVLMGLPGAGKGTQAE 18
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 25.7 bits (55), Expect = 9.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 215 VLLYGPPGTGKTLLARACAAQ 235
V+L GP GK+ + R +
Sbjct: 5 VVLSGPSAVGKSTVVRCLRER 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.369
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,543,232
Number of extensions: 73299
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 126
Length of query: 431
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,199,356
Effective search space: 411379108
Effective search space used: 411379108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.5 bits)