BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15152
(192 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V535|RBM8A_DROME RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu PE=1 SV=1
Length = 165
Score = 207 bits (526), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 95/142 (66%), Positives = 119/142 (83%), Gaps = 1/142 (0%)
Query: 8 KGIARLKEKARKKKGRGFGTETSTRNEIREYESMETDVGDE-EPGPQRSVEGWILFVTGV 66
+GI RLKEKA+ +KGRGFG++++TR I YE + + DE EPGPQRSVEGWILFVT +
Sbjct: 21 QGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSI 80
Query: 67 HEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL 126
HEEAQED++ EKF +YGEIKN+HLNLDRRTGF KGYALVEY+++K+A AA++ALNG I+
Sbjct: 81 HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 140
Query: 127 GQTVTVDWCFVKGPKKVAGEQK 148
GQT+ VDWCFVKGPK+V +K
Sbjct: 141 GQTIQVDWCFVKGPKRVKKSEK 162
>sp|B5DGI7|RBM8A_SALSA RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1
Length = 175
Score = 192 bits (488), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/132 (68%), Positives = 115/132 (87%), Gaps = 3/132 (2%)
Query: 10 IARLKEKARKKKGRGFGTETSTRNEIRE-YESMETDVGDEEPGPQRSVEGWILFVTGVHE 68
I +LKEKA+++KGRGFG+E R+ +RE Y+++E D GDE PGPQRSVEGWILFVTGVHE
Sbjct: 25 IHKLKEKAKRRKGRGFGSEEGARSRVREDYDTVEQD-GDE-PGPQRSVEGWILFVTGVHE 82
Query: 69 EAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQ 128
EA E+D+H+KF+E+GEIKNLHLNLDRRTG+LKGYALVEY++YKEA AA + LNG ++GQ
Sbjct: 83 EATEEDIHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQDMMGQ 142
Query: 129 TVTVDWCFVKGP 140
++VDW FV+GP
Sbjct: 143 PISVDWGFVRGP 154
>sp|Q5D018|RBM8A_DANRE RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1
Length = 174
Score = 181 bits (459), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 105/120 (87%), Gaps = 3/120 (2%)
Query: 22 GRGFGTETSTRNEIRE-YESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFS 80
GRGFG+E R+ +RE Y+++E D GDE PGPQRSVEGWILFVTGVHEEA E+D+H+KF+
Sbjct: 37 GRGFGSEEGARSRVREDYDTVEQD-GDE-PGPQRSVEGWILFVTGVHEEATEEDVHDKFA 94
Query: 81 EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGP 140
E+GEIKNLHLNLDRRTG+LKGYALVEY++YKEA AA + LNG ++GQ ++VDWCFV+GP
Sbjct: 95 EFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFVRGP 154
>sp|Q6PH90|RB8AB_XENLA RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1
Length = 174
Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/122 (72%), Positives = 103/122 (84%), Gaps = 3/122 (2%)
Query: 22 GRGFGTETSTRNEIRE-YESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFS 80
GRGFG + TR IRE Y+S+E D GDE PGPQRSVEGWILFVTGVHEEA E+D+H+KF
Sbjct: 37 GRGFGADEGTRTRIREDYDSVEQD-GDE-PGPQRSVEGWILFVTGVHEEATEEDIHDKFG 94
Query: 81 EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGP 140
E+GEIKN+HLNLDRRTGFLKGYALVEY++YKEA AA + LNG ++GQ V+VDW FV+GP
Sbjct: 95 EFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGP 154
Query: 141 KK 142
K
Sbjct: 155 PK 156
>sp|Q28BZ1|RBM8A_XENTR RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1
Length = 174
Score = 179 bits (453), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/122 (71%), Positives = 103/122 (84%), Gaps = 3/122 (2%)
Query: 22 GRGFGTETSTRNEIRE-YESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFS 80
GRGFG + TR IRE Y+S+E D GDE PGPQRSVEGWILFVTGVHEEA E+D+H+KF
Sbjct: 37 GRGFGADEGTRARIREDYDSVEQD-GDE-PGPQRSVEGWILFVTGVHEEATEEDIHDKFG 94
Query: 81 EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGP 140
E+GEIKN+HLNLDRRTGFLKGYALVEY++YKEA AA + LNG ++GQ ++VDW FV+GP
Sbjct: 95 EFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGFVRGP 154
Query: 141 KK 142
K
Sbjct: 155 PK 156
>sp|Q9DF42|RB8AA_XENLA RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-a PE=2 SV=1
Length = 174
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/122 (71%), Positives = 103/122 (84%), Gaps = 3/122 (2%)
Query: 22 GRGFGTETSTRNEIRE-YESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFS 80
GRGFG + T+ IRE Y+S+E D GDE PGPQRSVEGWILFVTGVHEEA E+D+H+KF
Sbjct: 37 GRGFGADEGTKTRIREVYDSVEQD-GDE-PGPQRSVEGWILFVTGVHEEATEEDIHDKFG 94
Query: 81 EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGP 140
E+GEIKN+HLNLDRRTGFLKGYALVEY++YKEA AA + LNG ++GQ V+VDW FV+GP
Sbjct: 95 EFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGP 154
Query: 141 KK 142
K
Sbjct: 155 PK 156
>sp|Q27W01|RBM8A_RAT RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm8a PE=2 SV=1
Length = 174
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 101/117 (86%), Gaps = 3/117 (2%)
Query: 22 GRGFGTETSTRNEIRE-YESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFS 80
GRGFG+E +R +RE Y+S+E D GDE PGPQRSVEGWILFVTGVHEEA E+D+H+KF+
Sbjct: 37 GRGFGSEEGSRARMREDYDSVEQD-GDE-PGPQRSVEGWILFVTGVHEEATEEDIHDKFA 94
Query: 81 EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137
EYGEIKN+HLNLDRRTG+LKGY LVEY++YKEA AA + LNG ++GQ ++VDWCFV
Sbjct: 95 EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 151
>sp|Q9Y5S9|RBM8A_HUMAN RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1
Length = 174
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 101/117 (86%), Gaps = 3/117 (2%)
Query: 22 GRGFGTETSTRNEIRE-YESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFS 80
GRGFG+E +R +RE Y+S+E D GDE PGPQRSVEGWILFVTGVHEEA E+D+H+KF+
Sbjct: 37 GRGFGSEEGSRARMREDYDSVEQD-GDE-PGPQRSVEGWILFVTGVHEEATEEDIHDKFA 94
Query: 81 EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137
EYGEIKN+HLNLDRRTG+LKGY LVEY++YKEA AA + LNG ++GQ ++VDWCFV
Sbjct: 95 EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 151
>sp|Q3ZCE8|RBM8A_BOVIN RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=2
Length = 174
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 101/117 (86%), Gaps = 3/117 (2%)
Query: 22 GRGFGTETSTRNEIRE-YESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFS 80
GRGFG+E +R +RE Y+S+E D GDE PGPQRSVEGWILFVTGVHEEA E+D+H+KF+
Sbjct: 37 GRGFGSEEGSRARMREDYDSVEQD-GDE-PGPQRSVEGWILFVTGVHEEATEEDIHDKFA 94
Query: 81 EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137
EYGEIKN+HLNLDRRTG+LKGY LVEY++YKEA AA + LNG ++GQ ++VDWCFV
Sbjct: 95 EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 151
>sp|Q9CWZ3|RBM8A_MOUSE RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=1 SV=3
Length = 174
Score = 173 bits (438), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 101/117 (86%), Gaps = 3/117 (2%)
Query: 22 GRGFGTETSTRNEIRE-YESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFS 80
GRGFG++ +R +RE Y+S+E D GDE PGPQRSVEGWILFVTGVHEEA E+D+H+KF+
Sbjct: 37 GRGFGSKEGSRARMREDYDSVEQD-GDE-PGPQRSVEGWILFVTGVHEEATEEDIHDKFA 94
Query: 81 EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137
EYGEIKN+HLNLDRRTG+LKGY LVEY++YKEA AA + LNG ++GQ ++VDWCFV
Sbjct: 95 EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 151
>sp|O42847|YFH9_SCHPO Uncharacterized RNA-binding protein C23A1.09 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC23A1.09 PE=4 SV=1
Length = 121
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Query: 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYK 111
P +SVEG+I+ VTGVH EA E+ + + F+++G +KNLHLNLDRRTG++KGYAL+EY + +
Sbjct: 3 PAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLE 62
Query: 112 EASAARDALNGTTILGQTVTVDWCFVKGPKK 142
+A A D N ++L + + VD+ F++ P++
Sbjct: 63 QAQKAVDEKN-LSLLDEKLEVDFAFLEPPER 92
>sp|Q4P7G1|EIF3G_USTMA Eukaryotic translation initiation factor 3 subunit G OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=TIF35 PE=3 SV=1
Length = 308
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L VT + E+A +DD+ E F +G + +++ DR TG KGYA V +++ ++A AR +
Sbjct: 227 LRVTNLSEDADDDDLRELFMRFGRVVRVYVGRDRETGICKGYAFVSFENREDADRARQKV 286
Query: 121 NGTTILGQTVTVDWCFVKG 139
+G ++ W +G
Sbjct: 287 DGRGYDNLILSCQWSLPRG 305
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEA 113
RS LFV G+ E+ E+ + E F G ++ + DR TG KG+ V+++S ++A
Sbjct: 570 RSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDA 626
Query: 114 SAARDALNGTTILGQTVTVDWCFVKG 139
AA++A+ I G VT+DW KG
Sbjct: 627 KAAKEAMEDGEIDGNKVTLDWAKPKG 652
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 13/90 (14%)
Query: 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIK---NLHLNLDRRTGFLKGYALVEYDSYK 111
S E L ++ + A E+ + E F + IK N H G KGYA +E+ S++
Sbjct: 485 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPH-------GKSKGYAFIEFASFE 537
Query: 112 EASAARDALNGTTILGQTVTVDWCFVKGPK 141
+A A ++ N I G+T+ ++ ++GP+
Sbjct: 538 DAKEALNSCNKMEIEGRTIRLE---LQGPR 564
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEA 113
RS LFV G+ E+ E+ + E F G ++ + DR TG KG+ V+++S ++A
Sbjct: 564 RSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDA 620
Query: 114 SAARDALNGTTILGQTVTVDWCFVKG 139
AA++A+ I G VT+DW KG
Sbjct: 621 KAAKEAMEDGEIDGNKVTLDWAKPKG 646
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIK---NLHLNLDRRTGFLKGYALVEYDSYK 111
S E L ++ + A ++ + E F + IK N H G KGYA +E+ S++
Sbjct: 483 SGESKTLVLSNLSYSATKETLEEVFEKATFIKVPQNPH-------GKPKGYAFIEFASFE 535
Query: 112 EASAARDALNGTTILGQTVTVDW 134
+A A ++ N I G+T+ ++
Sbjct: 536 DAKEALNSCNKMEIEGRTIRLEL 558
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEA 113
RS LFV G+ E+ E+ + E F G ++ + DR TG KG+ V+++S ++A
Sbjct: 567 RSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDA 623
Query: 114 SAARDALNGTTILGQTVTVDWCFVKG 139
AA++A+ I G VT+DW KG
Sbjct: 624 KAAKEAMEDGEIDGNKVTLDWAKPKG 649
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEAS 114
S E L ++ + A E+ + E F + IK + G KGYA +E+ S+++A
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ----NQQGKSKGYAFIEFASFEDAK 537
Query: 115 AARDALNGTTILGQTVTVDWCFVKGPK 141
A ++ N I G+T+ ++ ++GP+
Sbjct: 538 EALNSCNKMEIEGRTIRLE---LQGPR 561
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEA 113
RS LFV G+ E+ E+ + E F G ++ + DR TG KG+ V+++S ++A
Sbjct: 569 RSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDA 625
Query: 114 SAARDALNGTTILGQTVTVDWCFVKG 139
AA++A+ I G VT+DW KG
Sbjct: 626 KAAKEAMEDGEIDGNKVTLDWAKPKG 651
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEAS 114
S E L ++ + A E+ + E F + IK + G KGYA +E+ S+++A
Sbjct: 484 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAK 539
Query: 115 AARDALNGTTILGQTVTVDWCFVKGPK 141
A ++ N I G+ + ++ ++GP+
Sbjct: 540 EALNSCNKREIEGRAIRLE---LQGPR 563
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEA 113
RS LFV G+ E+ E+ + E F G ++ + DR TG KG+ V+++S ++A
Sbjct: 568 RSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDA 624
Query: 114 SAARDALNGTTILGQTVTVDWCFVKG 139
AA++A+ I G VT+DW KG
Sbjct: 625 KAAKEAMEDGEIDGNKVTLDWAKPKG 650
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEAS 114
S E L ++ + A E+ + E F + IK + G KGYA +E+ S+++A
Sbjct: 483 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAK 538
Query: 115 AARDALNGTTILGQTVTVDWCFVKGPK 141
A ++ N I G+ + ++ ++GP+
Sbjct: 539 EALNSCNKREIEGRAIRLE---LQGPR 562
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEA 113
RS LFV G+ E+ E+ + E F G ++ + DR TG KG+ V+++S ++A
Sbjct: 567 RSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDA 623
Query: 114 SAARDALNGTTILGQTVTVDWCFVKG 139
AA++A+ I G VT+DW KG
Sbjct: 624 KAAKEAMEDGEIDGNKVTLDWAKPKG 649
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEAS 114
S E L ++ + A E+ + E F + IK + G KGYA +E+ S+++A
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQ----NQNGKSKGYAFIEFASFEDAK 537
Query: 115 AARDALNGTTILGQTVTVDWCFVKGPK 141
A ++ N I G+ + ++ ++GP+
Sbjct: 538 EALNSCNKREIEGRAIRLE---LQGPR 561
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEA 113
R + LF+ G+ ED + E F++YGE+ + + LDR TG +G+ V + S + A
Sbjct: 35 RCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94
Query: 114 SAARDALNGTTILGQTVTVDWC 135
S+A AL+G + G+ V V++
Sbjct: 95 SSAIQALDGRDLHGRVVKVNYA 116
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 40 SMETDVG--DEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTG 97
+ E+D+G DE + ++V G+ + E D+ FS+YGEI +++L D+ TG
Sbjct: 15 ARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTG 74
Query: 98 FLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135
KG+A + Y+ + A D LNG +LG+T+ VD C
Sbjct: 75 KSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHC 112
>sp|Q5R723|PPIE_PONAB Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2
SV=1
Length = 301
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
+L+V G+ EE + +H F +G+I ++ + LD T +G+A VE++ ++A+AA D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 120 LNGTTILGQTVTVD 133
+N + + G+T+ V+
Sbjct: 67 MNESELFGRTIRVN 80
>sp|Q9UNP9|PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1
SV=1
Length = 301
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
+L+V G+ EE + +H F +G+I ++ + LD T +G+A VE++ ++A+AA D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 120 LNGTTILGQTVTVD 133
+N + + G+T+ V+
Sbjct: 67 MNESELFGRTIRVN 80
>sp|A4FV72|PPIE_BOVIN Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2
SV=1
Length = 301
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
+L+V G+ EE + +H F +G+I ++ + LD T +G+A VE++ ++A+AA D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 120 LNGTTILGQTVTVD 133
+N + + G+T+ V+
Sbjct: 67 MNESELFGRTIRVN 80
>sp|Q9QZH3|PPIE_MOUSE Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2
SV=2
Length = 301
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
+L+V G+ EE + +H F +G+I ++ + LD T +G+A VE++ ++A+AA D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 120 LNGTTILGQTVTVD 133
+N + + G+T+ V+
Sbjct: 67 MNESELFGRTIRVN 80
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAAR 117
WI F+ G+ E E D+ FS+YGEI N++L D++TG KG+ + Y+ + A
Sbjct: 36 AWI-FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAV 94
Query: 118 DALNGTTILGQTVTVD 133
D NG I G+T+ VD
Sbjct: 95 DNFNGIKIKGRTIRVD 110
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAAR 117
WI F+ G+ E E D+ FS+YGEI N++L D++TG KG+ + Y+ + A
Sbjct: 36 AWI-FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAV 94
Query: 118 DALNGTTILGQTVTVD 133
D NG I G+T+ VD
Sbjct: 95 DNFNGIKIKGRTIRVD 110
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAAR 117
WI FV G+ E E D+ FS+YGEI N++L D++TG KG+ + Y+ + A
Sbjct: 36 AWI-FVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAV 94
Query: 118 DALNGTTILGQTVTVD 133
D NG I G+T+ VD
Sbjct: 95 DNFNGIKIKGRTIRVD 110
>sp|Q9WX39|RBPF_NOSS1 Putative RNA-binding protein RbpF OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpF PE=3 SV=3
Length = 105
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
++V + E ++D+ F+EYG +K + L DR TG L+G+A VE S E +AA + L
Sbjct: 3 IYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIEGL 62
Query: 121 NGTTILGQTVTVD 133
+G +G+ + V+
Sbjct: 63 DGAEWMGRDLKVN 75
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
LFV+ ++ E+ E + +F YG IK +HL D+ T KGYA +EY ++ AA
Sbjct: 139 TLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQ 198
Query: 120 LNGTTILGQTVTVD 133
+G I G+ V VD
Sbjct: 199 ADGQKIDGRRVLVD 212
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 49 EPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYD 108
+P RS+ +FV + EA E+ + + FSE G + + L DR TG KGY EY
Sbjct: 8 DPAMDRSLRS--VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQ 65
Query: 109 SYKEASAARDALNGTTILGQTVTVD 133
+ A +A LNG G+ + VD
Sbjct: 66 DQETALSAMRNLNGREFSGRALRVD 90
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rbpA PE=3 SV=3
Length = 101
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
++V + + E D+ F+EYG +K + L DR TG ++G+ VE ++ E +AA +AL
Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62
Query: 121 NGTTILGQTVTVD 133
+G +G+ + V+
Sbjct: 63 DGAEWMGRDLKVN 75
>sp|Q16560|U1SBP_HUMAN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo
sapiens GN=SNRNP35 PE=1 SV=1
Length = 246
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
LFV ++ + +ED + E FS YG+I+ L L D TGF KGYA +EY + A
Sbjct: 53 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 112
Query: 121 NGTTILGQTVTVDW 134
+G I + VD+
Sbjct: 113 DGLVIDQHEIFVDY 126
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 49 EPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYD 108
+P RS+ +FV + EA E+ + + FSE G + + L DR TG KGY EY
Sbjct: 8 DPAMDRSLRS--VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQ 65
Query: 109 SYKEASAARDALNGTTILGQTVTVD 133
+ A +A LNG G+ + VD
Sbjct: 66 DQETALSAMRNLNGREFSGRALRVD 90
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 49 EPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYD 108
+P RS+ +FV + EA E+ + + FSE G + + L DR TG KGY EY
Sbjct: 8 DPAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65
Query: 109 SYKEASAARDALNGTTILGQTVTVD 133
+ A +A LNG G+ + VD
Sbjct: 66 DQETALSAMRNLNGREFSGRALRVD 90
>sp|Q44554|RBPB_NOSS1 Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpB PE=3 SV=3
Length = 103
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
++V + + E+ ++ F+EYG +K + L +DR TG ++G+ VE S E +AA +AL
Sbjct: 3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEAL 62
Query: 121 NGTTILGQTVTVD 133
+G +G+ + V+
Sbjct: 63 DGAEWMGRDLKVN 75
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1
Length = 828
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 47 DEEPGPQRSV----EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGY 102
DEEP ++ + LF+ + A+E+D + FS+YGE++ +HL ++ +TG KG+
Sbjct: 285 DEEPSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGF 344
Query: 103 ALVEYDSYKEASAARDALNGTTILGQTVTV 132
A V+++ + A AA +A +G G+ + +
Sbjct: 345 AHVQFEDPENAIAAYEAQDGKIFQGRLLHI 374
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKE 112
+++++ IL + + EA + D+ + F +G +K + + + +G+A EY S KE
Sbjct: 698 KKAIDSKIL-IKNLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKE 755
Query: 113 ASAARDALNGTTILGQTVTVDWC 135
A A AL GT +LG+ + + +
Sbjct: 756 AEHAMSALQGTHLLGRRLVLQYA 778
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 49 EPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYD 108
+P RS+ +FV + EA E+ + + FSE G + + L DR TG KGY EY
Sbjct: 8 DPAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65
Query: 109 SYKEASAARDALNGTTILGQTVTVD 133
+ A +A LNG G+ + VD
Sbjct: 66 DQETALSAMRNLNGREFSGRALRVD 90
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 49 EPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYD 108
+P RS+ +FV + EA E+ + + FSE G + + L DR TG KGY EY
Sbjct: 8 DPAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65
Query: 109 SYKEASAARDALNGTTILGQTVTVD 133
+ A +A LNG G+ + VD
Sbjct: 66 DQETALSAMRNLNGREFSGRALRVD 90
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
++V + +DD+ + FSEYG + + L DR TG ++G+ VE +S AA AL
Sbjct: 3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQAL 62
Query: 121 NGTTILGQTVTVD 133
+G +G+ + V+
Sbjct: 63 DGAEWMGRVLKVN 75
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
LFV V+ + E + +F YG IK +H+ ++R+G +GYA +EY+ ++ +A
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 121 NGTTILGQTVTVD 133
+G I G+ V VD
Sbjct: 165 DGKKIDGRRVLVD 177
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%)
Query: 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEAS 114
S+ L+V+G+ + + +M + FS+YG I + LD+ TG +G + +D EA
Sbjct: 121 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAE 180
Query: 115 AARDALNGTTILGQTVTVDWCFVKGPKKVAGE 146
A LNG LG + F P + G+
Sbjct: 181 EAIKGLNGQKPLGAAEPITVKFANNPSQKTGQ 212
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARD 118
W +FV + EA E + + F +G + N+ + D T KG+ V +Y EA+ A
Sbjct: 284 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 343
Query: 119 ALNG 122
+LNG
Sbjct: 344 SLNG 347
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 40 SMETDVGDEEPGPQRSVEGWILFVTGVHEEAQ-------------EDDMHEKFSEYGEIK 86
+ME+ VG GP G +L G ++++ +D+ F G+I+
Sbjct: 8 AMESQVGGGPAGPALP-NGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIE 66
Query: 87 NLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135
+ L D+ TG GY V Y +A A + LNG + +T+ V +
Sbjct: 67 SCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
LFV G+ E+ E+ + E F G I + + DR TG KG+ V++ S ++A AA++A+
Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Query: 121 NGTTILGQTVTVDWCFVKG 139
I G VT+D+ KG
Sbjct: 612 EDGEIDGNKVTLDFAKPKG 630
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAA 116
+ LFV + ED+M F E++ L LN + G KG A +E+ + EA A
Sbjct: 369 DARTLFVKNLPYRVTEDEMKNVFENALEVR-LVLN---KEGSSKGMAYIEFKTEAEAEKA 424
Query: 117 RDALNGTTILGQTVTVDWCFVKGPKKVAGEQKVGPEGGVKVLF 159
+ GT + G+ + +D+ G K QK G E K L
Sbjct: 425 LEEKQGTEVDGRAMVIDYT---GEKSQQESQKGGGERESKTLI 464
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF35 PE=3 SV=1
Length = 294
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L VT + EEA +DD+ F +YG I +++ DR TG +G+A V Y A AA +A+
Sbjct: 216 LRVTNLSEEATDDDLRRMFGKYGMINRVYVAKDRDTGRPRGFAFVTYTLKSHAQAALEAM 275
Query: 121 NGTTILGQTVTVDW 134
+G + VD+
Sbjct: 276 DGHGFDNLIMKVDY 289
>sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70
PE=2 SV=1
Length = 439
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
LFV V+ + E + +F YG IK +H+ +R+G +GYA +EY+ ++ +A
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 121 NGTTILGQTVTVD 133
+G I G+ V VD
Sbjct: 165 DGKKIDGRRVLVD 177
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%)
Query: 34 EIREYESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLD 93
E+ + E ++ EE Q+ E LF+ + EA E+D FS+YG ++ +H+ +D
Sbjct: 285 EVTQQSDNEPELTPEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAID 344
Query: 94 RRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132
RTG KG+ V++ ++A+ A +L+ G+ + +
Sbjct: 345 TRTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHI 383
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 69 EAQEDDMHEKFSEYGEIKNLHL--NLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL 126
EA D+ E F +G++K++ + D+ +G+A VE++ KEA A L G +L
Sbjct: 727 EATRKDLLELFGAFGQLKSVRVPKKFDQSA---RGFAFVEFNLMKEAETAMSQLEGVHLL 783
Query: 127 GQTVTVDWC 135
G+ + + +
Sbjct: 784 GRRLVMQYA 792
>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus
GN=Snrnp70 PE=1 SV=2
Length = 448
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
LFV V+ + E + +F YG IK +H+ +R+G +GYA +EY+ ++ +A
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 121 NGTTILGQTVTVD 133
+G I G+ V VD
Sbjct: 165 DGKKIDGRRVLVD 177
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+FV G+ + E D+ F++YGE+ +++L D+ TG KG+A + Y+ + A D L
Sbjct: 38 VFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 121 NGTTILGQTVTVD 133
NG +LG+ V VD
Sbjct: 98 NGAKVLGRIVRVD 110
>sp|Q1LZH0|U1SBP_BOVIN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos
taurus GN=SNRNP35 PE=2 SV=1
Length = 245
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEY-DSYKEASAARDA 119
LFV ++ + +E+ + E FS YG+I+ L L D TGF KGYA +EY D A RDA
Sbjct: 53 LFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLKAYRDA 112
Query: 120 LNGTTILGQTVTVDW 134
+G I + VD+
Sbjct: 113 -DGLVIDQHEIFVDY 126
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens
GN=SNRNP70 PE=1 SV=2
Length = 437
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
LFV V+ + E + +F YG IK +H+ +R+G +GYA +EY+ ++ +A
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 121 NGTTILGQTVTVD 133
+G I G+ V VD
Sbjct: 165 DGKKIDGRRVLVD 177
>sp|Q5U1W5|U1SBP_RAT U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus
norvegicus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
LFV ++ + +E+ + E FS YG+I+ L L D TGF KGYA +EY + A
Sbjct: 53 LFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDA 112
Query: 121 NGTTILGQTVTVDW 134
+G I + VD+
Sbjct: 113 DGLVIDQHEIFVDY 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,253,629
Number of Sequences: 539616
Number of extensions: 2907287
Number of successful extensions: 8320
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 7077
Number of HSP's gapped (non-prelim): 1370
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)