Query psy15152
Match_columns 192
No_of_seqs 258 out of 2051
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 21:55:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0130|consensus 99.9 7.3E-25 1.6E-29 152.2 6.6 133 12-144 25-158 (170)
2 TIGR01659 sex-lethal sex-letha 99.9 1.6E-23 3.5E-28 171.7 15.0 133 7-140 134-277 (346)
3 KOG0148|consensus 99.9 5.1E-23 1.1E-27 158.0 11.8 127 7-140 89-240 (321)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.5E-22 3.3E-27 166.9 14.9 81 59-139 270-350 (352)
5 TIGR01645 half-pint poly-U bin 99.9 1.3E-22 2.7E-27 175.1 14.0 134 7-141 134-287 (612)
6 PLN03134 glycine-rich RNA-bind 99.9 5.3E-21 1.2E-25 138.8 14.8 87 55-141 31-117 (144)
7 TIGR01622 SF-CC1 splicing fact 99.9 9.4E-21 2E-25 161.4 14.4 131 6-137 115-265 (457)
8 KOG0144|consensus 99.8 1.3E-21 2.9E-26 158.5 6.3 136 8-145 62-213 (510)
9 KOG0145|consensus 99.8 6.3E-21 1.4E-25 146.0 9.2 133 6-140 67-211 (360)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4.3E-20 9.4E-25 152.3 13.4 131 7-139 30-172 (352)
11 KOG0117|consensus 99.8 1.4E-20 3.1E-25 153.1 9.4 130 7-144 192-337 (506)
12 KOG0131|consensus 99.8 2.4E-20 5.3E-25 135.8 6.3 135 8-143 37-182 (203)
13 TIGR01628 PABP-1234 polyadenyl 99.8 2.3E-19 5E-24 156.6 12.5 130 7-139 205-365 (562)
14 TIGR01648 hnRNP-R-Q heterogene 99.8 1.1E-18 2.4E-23 150.5 15.1 113 21-141 180-310 (578)
15 TIGR01628 PABP-1234 polyadenyl 99.8 4.4E-19 9.6E-24 154.8 12.3 130 7-138 27-167 (562)
16 TIGR01659 sex-lethal sex-letha 99.8 3.6E-18 7.7E-23 140.2 11.8 86 53-138 102-187 (346)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.8 3E-18 6.5E-23 147.9 11.4 82 58-139 295-376 (509)
18 KOG0117|consensus 99.8 2.5E-18 5.3E-23 140.2 10.0 134 7-141 110-251 (506)
19 KOG0122|consensus 99.8 2.6E-18 5.7E-23 130.5 9.4 83 56-138 187-269 (270)
20 PF00076 RRM_1: RNA recognitio 99.8 9.1E-18 2E-22 106.6 9.6 70 61-131 1-70 (70)
21 KOG0127|consensus 99.8 7E-18 1.5E-22 140.5 11.4 130 9-140 34-198 (678)
22 KOG0149|consensus 99.8 8E-18 1.7E-22 127.3 10.0 82 57-139 11-92 (247)
23 KOG0124|consensus 99.7 6.1E-18 1.3E-22 135.1 9.3 133 7-140 140-292 (544)
24 TIGR01648 hnRNP-R-Q heterogene 99.7 3E-17 6.6E-22 141.7 12.1 129 7-139 85-223 (578)
25 KOG0121|consensus 99.7 9.6E-18 2.1E-22 115.8 7.0 83 56-138 34-116 (153)
26 KOG0147|consensus 99.7 7.7E-18 1.7E-22 140.4 7.6 129 6-136 205-356 (549)
27 KOG0145|consensus 99.7 4.5E-17 9.8E-22 125.0 10.6 82 57-138 277-358 (360)
28 PF14259 RRM_6: RNA recognitio 99.7 1.6E-16 3.5E-21 101.3 10.0 70 61-131 1-70 (70)
29 KOG4205|consensus 99.7 1.4E-16 3E-21 127.9 9.3 137 6-144 32-182 (311)
30 TIGR01645 half-pint poly-U bin 99.7 1.7E-16 3.7E-21 137.4 10.2 80 57-136 106-185 (612)
31 KOG0148|consensus 99.7 1.1E-16 2.4E-21 123.4 7.8 82 58-139 62-143 (321)
32 KOG0107|consensus 99.7 2.7E-16 5.9E-21 114.1 8.8 78 58-140 10-87 (195)
33 KOG0113|consensus 99.7 7.9E-16 1.7E-20 120.0 11.7 89 54-142 97-185 (335)
34 KOG0111|consensus 99.7 9.5E-17 2.1E-21 120.5 5.5 89 56-144 8-96 (298)
35 PLN03120 nucleic acid binding 99.7 9.6E-16 2.1E-20 119.3 11.0 77 58-138 4-80 (260)
36 KOG0125|consensus 99.6 6.9E-16 1.5E-20 121.7 9.2 81 58-140 96-176 (376)
37 KOG4207|consensus 99.6 3.4E-16 7.4E-21 116.4 6.8 89 52-140 7-95 (256)
38 PLN03213 repressor of silencin 99.6 9.2E-16 2E-20 126.9 9.7 78 57-138 9-88 (759)
39 KOG0123|consensus 99.6 1.7E-15 3.6E-20 125.2 11.1 126 7-140 25-155 (369)
40 KOG0126|consensus 99.6 5.4E-17 1.2E-21 118.4 1.7 85 55-139 32-116 (219)
41 smart00362 RRM_2 RNA recogniti 99.6 5.5E-15 1.2E-19 93.2 9.0 72 60-133 1-72 (72)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 7.7E-15 1.7E-19 126.0 12.4 80 57-138 393-480 (481)
43 KOG0114|consensus 99.6 8.6E-15 1.9E-19 97.7 9.8 83 54-139 14-96 (124)
44 TIGR01622 SF-CC1 splicing fact 99.6 6.6E-15 1.4E-19 125.6 11.4 83 55-138 86-168 (457)
45 KOG0110|consensus 99.6 1.5E-15 3.2E-20 130.0 7.3 130 10-139 547-694 (725)
46 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.1E-14 2.3E-19 125.8 12.6 130 7-137 322-501 (509)
47 PLN03121 nucleic acid binding 99.6 1E-14 2.2E-19 112.0 10.3 77 56-136 3-79 (243)
48 KOG0108|consensus 99.6 5.4E-15 1.2E-19 123.6 9.3 82 59-140 19-100 (435)
49 smart00360 RRM RNA recognition 99.6 1E-14 2.2E-19 91.6 8.2 71 63-133 1-71 (71)
50 COG0724 RNA-binding proteins ( 99.6 1.4E-14 3E-19 113.9 9.9 80 58-137 115-194 (306)
51 KOG0131|consensus 99.6 5.5E-15 1.2E-19 108.0 5.6 80 57-136 8-87 (203)
52 cd00590 RRM RRM (RNA recogniti 99.5 9E-14 1.9E-18 88.1 9.9 74 60-134 1-74 (74)
53 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 6.3E-14 1.4E-18 120.4 11.8 78 56-138 273-351 (481)
54 KOG0146|consensus 99.5 1.1E-14 2.5E-19 112.2 5.7 88 54-141 281-368 (371)
55 KOG0144|consensus 99.5 3.1E-14 6.7E-19 116.1 8.0 86 56-141 32-120 (510)
56 KOG0415|consensus 99.5 4.3E-14 9.3E-19 112.8 6.8 92 48-139 229-320 (479)
57 KOG0105|consensus 99.5 2.3E-13 4.9E-18 99.9 8.9 80 57-139 5-84 (241)
58 KOG0124|consensus 99.5 3.9E-14 8.4E-19 113.5 4.7 75 59-133 114-188 (544)
59 PF13893 RRM_5: RNA recognitio 99.5 3.9E-13 8.4E-18 81.9 8.0 56 75-135 1-56 (56)
60 smart00361 RRM_1 RNA recogniti 99.5 3.8E-13 8.3E-18 85.8 8.0 61 72-132 2-69 (70)
61 KOG0123|consensus 99.4 3.7E-13 8E-18 111.4 9.2 133 3-138 190-349 (369)
62 KOG0127|consensus 99.4 1.3E-13 2.7E-18 115.4 5.9 85 58-142 5-89 (678)
63 KOG0109|consensus 99.4 1.8E-13 3.9E-18 106.7 4.7 80 51-138 71-150 (346)
64 KOG4208|consensus 99.4 2.8E-12 6.1E-17 95.7 8.3 84 55-138 46-130 (214)
65 KOG0109|consensus 99.3 3E-12 6.6E-17 99.9 6.3 72 59-138 3-74 (346)
66 KOG4212|consensus 99.3 8.2E-12 1.8E-16 102.3 8.6 78 59-137 45-123 (608)
67 KOG4206|consensus 99.3 1.6E-11 3.5E-16 92.9 8.0 80 58-140 9-92 (221)
68 KOG0146|consensus 99.3 8.1E-12 1.7E-16 96.7 5.9 85 57-142 18-105 (371)
69 KOG0153|consensus 99.2 7.1E-11 1.5E-15 94.3 10.6 79 54-138 224-303 (377)
70 KOG0132|consensus 99.2 2.9E-11 6.3E-16 104.9 7.7 81 56-142 419-499 (894)
71 KOG4205|consensus 99.2 1.2E-11 2.6E-16 99.6 5.0 85 57-142 5-89 (311)
72 KOG4661|consensus 99.1 1.9E-10 4.2E-15 97.2 8.7 87 56-142 403-489 (940)
73 KOG4212|consensus 99.1 2.2E-10 4.9E-15 94.0 8.4 78 53-135 531-608 (608)
74 KOG0533|consensus 99.1 2.4E-10 5.3E-15 88.8 7.9 81 58-139 83-163 (243)
75 KOG0110|consensus 99.1 2.2E-10 4.8E-15 98.7 8.1 78 59-136 516-596 (725)
76 KOG0116|consensus 99.1 7.5E-10 1.6E-14 92.5 10.3 82 58-140 288-369 (419)
77 KOG4209|consensus 99.1 7.1E-10 1.5E-14 86.2 8.6 88 53-141 96-183 (231)
78 KOG0226|consensus 99.0 3.9E-10 8.5E-15 86.7 5.4 83 57-139 189-271 (290)
79 KOG1457|consensus 99.0 5.6E-09 1.2E-13 79.1 10.5 84 58-141 34-121 (284)
80 KOG4211|consensus 98.9 9.9E-09 2.2E-13 85.5 10.1 79 56-136 101-180 (510)
81 KOG0106|consensus 98.9 3.1E-09 6.7E-14 81.1 5.7 72 60-139 3-74 (216)
82 PF04059 RRM_2: RNA recognitio 98.9 2.6E-08 5.6E-13 67.0 9.3 80 59-138 2-87 (97)
83 KOG0151|consensus 98.8 3.4E-08 7.3E-13 85.6 9.1 82 57-138 173-257 (877)
84 KOG4660|consensus 98.7 8.3E-09 1.8E-13 87.1 4.0 72 55-131 72-143 (549)
85 KOG1548|consensus 98.7 7.8E-08 1.7E-12 77.1 7.8 80 58-138 134-221 (382)
86 KOG4211|consensus 98.7 8.7E-08 1.9E-12 80.0 8.1 79 58-140 10-88 (510)
87 KOG1190|consensus 98.7 3.4E-07 7.3E-12 75.0 11.2 77 58-139 297-374 (492)
88 KOG4454|consensus 98.6 1.8E-08 3.9E-13 76.2 2.1 78 57-136 8-85 (267)
89 KOG0120|consensus 98.5 5.6E-08 1.2E-12 82.5 3.7 83 57-139 288-370 (500)
90 KOG0106|consensus 98.5 1.5E-07 3.2E-12 72.0 4.7 74 55-136 96-169 (216)
91 KOG1456|consensus 98.4 4E-06 8.7E-11 68.2 11.1 123 53-180 282-407 (494)
92 KOG4206|consensus 98.4 2.6E-06 5.7E-11 64.8 9.4 77 55-136 143-220 (221)
93 KOG0147|consensus 98.4 1.8E-07 3.8E-12 79.1 1.9 81 57-138 178-258 (549)
94 KOG0105|consensus 98.3 5.4E-06 1.2E-10 61.5 9.4 66 54-126 111-176 (241)
95 PF11608 Limkain-b1: Limkain b 98.3 3.4E-06 7.5E-11 54.6 7.0 68 59-136 3-75 (90)
96 KOG4210|consensus 98.3 4.3E-07 9.4E-12 72.9 3.1 83 58-141 184-267 (285)
97 KOG1995|consensus 98.3 7.8E-07 1.7E-11 71.8 4.5 86 55-140 63-156 (351)
98 KOG0128|consensus 98.2 3.6E-07 7.7E-12 80.8 1.2 113 15-139 702-816 (881)
99 KOG4849|consensus 98.2 1.5E-06 3.2E-11 70.1 3.7 75 58-132 80-156 (498)
100 PF08777 RRM_3: RNA binding mo 98.2 5.8E-06 1.3E-10 56.7 5.7 70 58-133 1-75 (105)
101 KOG1457|consensus 98.1 2.3E-06 5.1E-11 65.1 3.9 64 59-126 211-274 (284)
102 COG5175 MOT2 Transcriptional r 98.0 2E-05 4.3E-10 63.5 6.3 82 56-137 112-202 (480)
103 KOG2314|consensus 97.9 2.8E-05 6.2E-10 66.3 6.9 77 58-135 58-141 (698)
104 KOG1365|consensus 97.8 3.8E-05 8.2E-10 62.8 5.1 74 59-134 162-239 (508)
105 KOG4307|consensus 97.8 0.00011 2.3E-09 64.4 8.1 75 59-134 868-943 (944)
106 KOG0112|consensus 97.8 0.00013 2.9E-09 65.3 8.6 83 54-142 451-535 (975)
107 KOG1190|consensus 97.7 8.5E-05 1.8E-09 61.3 6.5 78 56-137 412-490 (492)
108 KOG3152|consensus 97.7 3.5E-05 7.6E-10 59.8 3.4 73 57-129 73-157 (278)
109 KOG1365|consensus 97.7 6.1E-05 1.3E-09 61.7 4.8 78 58-136 280-360 (508)
110 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00023 4.9E-09 48.2 6.6 78 58-137 6-91 (100)
111 KOG0129|consensus 97.6 0.00017 3.8E-09 61.0 7.1 67 53-119 365-432 (520)
112 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00016 3.4E-09 43.2 4.7 52 59-117 2-53 (53)
113 KOG1456|consensus 97.6 0.00055 1.2E-08 56.1 9.1 84 51-139 113-200 (494)
114 KOG0120|consensus 97.5 0.00037 8E-09 59.7 7.4 64 74-137 425-491 (500)
115 KOG2416|consensus 97.4 0.00021 4.5E-09 61.5 4.7 84 49-138 435-522 (718)
116 KOG1855|consensus 97.4 0.00021 4.5E-09 59.4 4.5 70 55-124 228-310 (484)
117 KOG4307|consensus 97.3 0.00031 6.8E-09 61.6 4.4 79 57-136 433-512 (944)
118 KOG0129|consensus 97.3 0.00079 1.7E-08 57.2 6.4 64 58-122 259-328 (520)
119 PF08952 DUF1866: Domain of un 97.2 0.0034 7.4E-08 45.2 8.3 78 55-141 24-110 (146)
120 KOG2193|consensus 97.2 0.00037 8.1E-09 57.9 3.8 76 59-140 2-78 (584)
121 PF08675 RNA_bind: RNA binding 97.2 0.0034 7.5E-08 40.7 7.1 55 59-122 10-64 (87)
122 KOG1548|consensus 97.2 0.0019 4.1E-08 52.4 7.3 82 52-137 259-351 (382)
123 KOG0149|consensus 97.0 0.00048 1.1E-08 53.0 2.3 29 6-35 38-67 (247)
124 PF10309 DUF2414: Protein of u 96.9 0.0052 1.1E-07 37.8 6.2 54 59-120 6-62 (62)
125 KOG0128|consensus 96.8 6.9E-05 1.5E-09 66.8 -4.2 69 58-126 667-735 (881)
126 KOG2202|consensus 96.7 0.00071 1.5E-08 52.7 1.5 63 74-137 84-147 (260)
127 KOG0115|consensus 96.6 0.0029 6.3E-08 49.4 4.0 77 59-136 32-112 (275)
128 COG0724 RNA-binding proteins ( 96.6 0.0067 1.4E-07 47.1 6.0 110 7-117 142-284 (306)
129 KOG2068|consensus 96.3 0.0016 3.5E-08 52.6 1.3 79 58-137 77-162 (327)
130 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.012 2.5E-07 44.2 5.5 82 57-138 6-98 (176)
131 KOG4208|consensus 96.2 0.0024 5.3E-08 48.3 1.7 62 8-78 78-140 (214)
132 KOG0122|consensus 96.2 0.0029 6.3E-08 49.1 1.9 38 7-45 216-255 (270)
133 KOG0111|consensus 96.2 0.0015 3.3E-08 49.9 0.4 35 7-42 37-73 (298)
134 PF15023 DUF4523: Protein of u 96.0 0.036 7.9E-07 39.7 6.7 74 55-136 83-160 (166)
135 KOG2193|consensus 95.9 0.0014 3E-08 54.6 -1.1 109 24-136 38-155 (584)
136 KOG1996|consensus 95.9 0.033 7.2E-07 44.5 6.5 64 73-136 301-365 (378)
137 KOG4676|consensus 95.8 0.045 9.7E-07 45.4 7.4 75 60-135 9-86 (479)
138 KOG2135|consensus 95.8 0.0052 1.1E-07 51.9 2.0 77 57-140 371-448 (526)
139 KOG0113|consensus 95.7 0.0064 1.4E-07 48.5 2.0 33 7-40 128-162 (335)
140 PF04847 Calcipressin: Calcipr 95.6 0.036 7.9E-07 41.8 5.7 63 71-139 8-72 (184)
141 KOG4207|consensus 95.6 0.0056 1.2E-07 46.5 1.2 36 7-43 40-77 (256)
142 PLN03134 glycine-rich RNA-bind 95.5 0.0091 2E-07 43.3 2.1 28 7-35 61-88 (144)
143 KOG4454|consensus 95.5 0.0052 1.1E-07 47.1 0.8 112 10-129 39-154 (267)
144 PF03880 DbpA: DbpA RNA bindin 95.3 0.1 2.2E-06 33.2 6.2 67 60-135 2-74 (74)
145 PF07576 BRAP2: BRCA1-associat 95.2 0.46 1E-05 32.7 9.7 65 60-126 15-80 (110)
146 KOG0226|consensus 95.0 0.013 2.7E-07 45.9 1.6 37 9-46 219-255 (290)
147 smart00361 RRM_1 RNA recogniti 94.9 0.016 3.6E-07 36.3 1.7 27 8-35 20-49 (70)
148 KOG0112|consensus 94.9 0.0057 1.2E-07 55.3 -0.7 79 57-136 371-449 (975)
149 KOG4660|consensus 94.8 0.066 1.4E-06 46.2 5.5 82 58-139 388-474 (549)
150 KOG4210|consensus 94.8 0.046 9.9E-07 44.2 4.3 83 57-139 87-169 (285)
151 KOG0126|consensus 94.3 0.023 4.9E-07 42.4 1.4 28 6-34 61-88 (219)
152 KOG2253|consensus 94.2 0.036 7.8E-07 48.8 2.6 79 48-135 30-108 (668)
153 KOG4285|consensus 94.0 0.26 5.7E-06 39.6 6.8 68 61-136 200-268 (350)
154 KOG4574|consensus 93.2 0.057 1.2E-06 48.9 2.2 74 60-139 300-375 (1007)
155 KOG0125|consensus 92.6 0.074 1.6E-06 43.2 1.9 35 7-44 123-157 (376)
156 KOG2591|consensus 91.9 0.56 1.2E-05 40.9 6.3 69 57-132 174-246 (684)
157 PF11767 SET_assoc: Histone ly 90.4 2.1 4.6E-05 26.6 6.4 55 69-132 11-65 (66)
158 KOG0804|consensus 88.6 1.7 3.7E-05 37.0 6.4 67 58-126 74-141 (493)
159 smart00360 RRM RNA recognition 87.5 0.54 1.2E-05 28.0 2.3 27 7-34 23-49 (71)
160 KOG2318|consensus 86.8 4.6 0.0001 35.6 8.1 84 52-135 168-305 (650)
161 KOG0108|consensus 86.2 0.54 1.2E-05 40.2 2.3 35 7-42 45-81 (435)
162 PF00076 RRM_1: RNA recognitio 83.6 0.37 8E-06 29.3 0.2 27 7-35 25-51 (70)
163 KOG4483|consensus 82.7 3.1 6.8E-05 35.0 5.1 55 58-119 391-446 (528)
164 KOG4676|consensus 72.4 0.45 9.7E-06 39.7 -2.4 66 59-129 152-217 (479)
165 PF04059 RRM_2: RNA recognitio 70.9 2.2 4.8E-05 28.7 1.0 28 10-38 33-61 (97)
166 PLN03120 nucleic acid binding 70.8 3.4 7.4E-05 32.9 2.2 25 6-34 30-54 (260)
167 KOG4410|consensus 70.2 8.8 0.00019 31.0 4.4 47 59-111 331-378 (396)
168 KOG0130|consensus 69.1 3.1 6.7E-05 29.8 1.5 37 6-43 98-136 (170)
169 KOG4019|consensus 67.7 4.4 9.6E-05 30.4 2.1 74 60-139 12-91 (193)
170 PLN03121 nucleic acid binding 66.7 4.4 9.4E-05 31.9 2.0 31 6-40 31-62 (243)
171 PF03468 XS: XS domain; Inter 65.4 16 0.00034 25.4 4.4 46 70-118 29-75 (116)
172 KOG0107|consensus 63.7 6 0.00013 29.6 2.1 19 7-31 37-55 (195)
173 PRK14548 50S ribosomal protein 63.3 32 0.0007 22.4 5.3 56 61-119 23-80 (84)
174 PLN03213 repressor of silencin 63.2 5.4 0.00012 34.6 2.1 32 7-43 37-72 (759)
175 smart00596 PRE_C2HC PRE_C2HC d 61.3 16 0.00035 22.9 3.4 60 73-135 2-62 (69)
176 PF07530 PRE_C2HC: Associated 60.3 20 0.00044 22.3 3.9 62 73-137 2-64 (68)
177 TIGR03636 L23_arch archaeal ri 58.4 46 0.001 21.3 5.4 56 61-119 16-73 (77)
178 PRK11901 hypothetical protein; 50.2 39 0.00084 27.9 4.9 61 58-123 245-307 (327)
179 KOG3424|consensus 48.9 41 0.00089 23.5 4.1 46 69-115 34-84 (132)
180 PF02714 DUF221: Domain of unk 48.6 27 0.00058 28.4 3.9 32 103-136 1-32 (325)
181 KOG4209|consensus 47.8 19 0.0004 28.3 2.7 25 9-34 130-154 (231)
182 PRK01178 rps24e 30S ribosomal 47.1 58 0.0013 21.9 4.6 46 69-115 30-80 (99)
183 PF15513 DUF4651: Domain of un 45.6 46 0.00099 20.4 3.6 18 73-90 9-26 (62)
184 KOG2891|consensus 41.3 34 0.00073 27.7 3.2 66 60-125 151-247 (445)
185 KOG0415|consensus 41.1 19 0.0004 30.1 1.8 31 6-37 265-295 (479)
186 PF07292 NID: Nmi/IFP 35 domai 40.3 22 0.00048 23.4 1.8 25 55-79 49-73 (88)
187 PF10567 Nab6_mRNP_bdg: RNA-re 40.1 1E+02 0.0023 25.1 5.8 80 58-137 15-107 (309)
188 KOG4365|consensus 39.0 5.5 0.00012 34.0 -1.5 79 59-138 4-82 (572)
189 KOG1295|consensus 36.1 55 0.0012 27.5 3.8 66 59-125 8-77 (376)
190 PRK11634 ATP-dependent RNA hel 34.1 2.2E+02 0.0048 25.9 7.6 69 59-136 487-561 (629)
191 TIGR00110 ilvD dihydroxy-acid 33.3 3.3E+02 0.0072 24.3 8.3 38 99-139 382-419 (535)
192 PF03439 Spt5-NGN: Early trans 33.3 76 0.0017 20.4 3.5 26 99-124 43-68 (84)
193 COG5638 Uncharacterized conser 32.8 89 0.0019 26.8 4.5 40 51-90 139-183 (622)
194 PF11823 DUF3343: Protein of u 32.7 70 0.0015 19.8 3.2 28 102-129 3-30 (73)
195 COG5193 LHP1 La protein, small 32.1 22 0.00049 30.1 1.0 60 59-118 175-244 (438)
196 PTZ00071 40S ribosomal protein 32.1 1.8E+02 0.0038 20.8 5.3 46 69-115 35-86 (132)
197 KOG0156|consensus 31.8 81 0.0018 27.6 4.4 59 62-130 36-97 (489)
198 PF01282 Ribosomal_S24e: Ribos 30.8 1.5E+02 0.0033 19.1 5.1 46 69-115 12-62 (84)
199 KOG4008|consensus 30.3 41 0.00089 26.5 2.0 35 54-88 36-70 (261)
200 KOG2295|consensus 30.1 7.3 0.00016 34.2 -2.2 72 58-129 231-302 (648)
201 COG5507 Uncharacterized conser 28.3 80 0.0017 21.3 2.9 20 101-120 67-86 (117)
202 PRK11230 glycolate oxidase sub 27.1 3.6E+02 0.0078 23.7 7.6 49 72-121 203-255 (499)
203 PF11411 DNA_ligase_IV: DNA li 27.1 42 0.0009 18.2 1.2 16 68-83 19-34 (36)
204 COG0481 LepA Membrane GTPase L 25.8 2.3E+02 0.005 25.2 5.9 48 56-104 295-343 (603)
205 PTZ00191 60S ribosomal protein 24.3 2.6E+02 0.0057 20.3 5.2 54 60-116 83-138 (145)
206 PRK10943 cold shock-like prote 24.3 29 0.00062 21.6 0.2 10 21-30 13-22 (69)
207 PRK14998 cold shock-like prote 23.8 28 0.0006 22.0 0.1 9 21-29 11-19 (73)
208 PRK09937 stationary phase/star 23.2 29 0.00063 21.9 0.1 9 21-29 11-19 (74)
209 PRK09507 cspE cold shock prote 22.9 31 0.00066 21.4 0.2 9 22-30 14-22 (69)
210 PF04026 SpoVG: SpoVG; InterP 22.6 2.1E+02 0.0046 18.6 4.1 26 84-109 2-27 (84)
211 PF09707 Cas_Cas2CT1978: CRISP 21.4 2.1E+02 0.0045 18.7 3.9 45 60-107 27-71 (86)
212 PRK10354 RNA chaperone/anti-te 20.8 32 0.00069 21.4 -0.1 8 22-29 15-22 (70)
213 PRK10905 cell division protein 20.7 2.2E+02 0.0047 23.6 4.6 60 59-123 248-309 (328)
214 COG0030 KsgA Dimethyladenosine 20.3 1.2E+02 0.0026 24.3 3.1 35 59-93 96-130 (259)
215 PF14657 Integrase_AP2: AP2-li 20.2 1.8E+02 0.0038 16.2 3.9 30 92-121 9-38 (46)
No 1
>KOG0130|consensus
Probab=99.91 E-value=7.3e-25 Score=152.17 Aligned_cols=133 Identities=67% Similarity=1.173 Sum_probs=117.5
Q ss_pred EeeccCcCCCCCCccCCCCC-hhHHHhhhcccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEE
Q psy15152 12 RLKEKARKKKGRGFGTETST-RNEIREYESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHL 90 (192)
Q Consensus 12 ~~~d~~~~~k~rG~gfv~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i 90 (192)
..+.++.++|+||||..+-. ......|+..+.+++...|+|+++.+++.|||.+++...+++++.+.|..||+|+.+.+
T Consensus 25 ~~~e~Akk~kGRGf~~e~~sr~r~r~~yd~vee~~s~~~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihL 104 (170)
T KOG0130|consen 25 GLKEKAKKRKGRGFGSEKDSRRRRRLSYDDVEEDGSDMRPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHL 104 (170)
T ss_pred HHHHHHHhhcCCCcccccchHHHhhhhhhhHhhcccccCCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceee
Confidence 34466777789999987663 33344577778888778999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCCCCCC
Q psy15152 91 NLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGPKKVA 144 (192)
Q Consensus 91 ~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~~~~~ 144 (192)
..|+.||..+|||+|+|.+.++|++|+..|||..|.|+.|.|.|+..+++.+..
T Consensus 105 NLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~gp~~g~ 158 (170)
T KOG0130|consen 105 NLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKGPERGK 158 (170)
T ss_pred ccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecCCccCc
Confidence 999999999999999999999999999999999999999999999987765444
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.91 E-value=1.6e-23 Score=171.67 Aligned_cols=133 Identities=21% Similarity=0.273 Sum_probs=106.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcccCC---CCCCCCC----CCCCCCCcEEEEcCCCCCCcHHHHHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE--IREYESMETD---VGDEEPG----PQRSVEGWILFVTGVHEEAQEDDMHE 77 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~~~---~~~~~~~----~~~~~~~~~l~V~nLp~~~t~~~L~~ 77 (192)
+++|++++|+.+++ +|||+||+|..++ ..++..++.. +...... .......++|||+|||+++++++|++
T Consensus 134 V~~v~i~~d~~tg~-srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~ 212 (346)
T TIGR01659 134 INTCRIMRDYKTGY-SFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDT 212 (346)
T ss_pred EEEEEEEecCCCCc-cCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHH
Confidence 57899999999996 9999999994433 3333333322 1111110 11223467899999999999999999
Q ss_pred hhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEecccCCC
Q psy15152 78 KFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG--QTVTVDWCFVKGP 140 (192)
Q Consensus 78 ~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g--~~l~v~~a~~~~~ 140 (192)
+|++||.|..+.++.|+.+|+++|||||+|.+.++|++||+.||+..+.+ ++|+|+++.....
T Consensus 213 ~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 213 IFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred HHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 99999999999999999999999999999999999999999999999876 7999999986544
No 3
>KOG0148|consensus
Probab=99.90 E-value=5.1e-23 Score=158.04 Aligned_cols=127 Identities=22% Similarity=0.347 Sum_probs=107.7
Q ss_pred eeeeEEeeccCcCCCCCCccCCCC--ChhHHHhhhcccCC--------CCCCCCC---------------CCCCCCCcEE
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETS--TRNEIREYESMETD--------VGDEEPG---------------PQRSVEGWIL 61 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f--~~~~~~~~~~~~~~--------~~~~~~~---------------~~~~~~~~~l 61 (192)
+.+.++++|..|+ ||+|||||+| ..++..++..+++. -+|...+ .+.+.+.++|
T Consensus 89 vS~akvirD~~T~-KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsV 167 (321)
T KOG0148|consen 89 VSDAKVIRDMNTG-KSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSV 167 (321)
T ss_pred cccceEeecccCC-cccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceE
Confidence 4578899999999 7999999999 56666677776554 1111111 2456778999
Q ss_pred EEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCC
Q psy15152 62 FVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGP 140 (192)
Q Consensus 62 ~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~ 140 (192)
||||++..+++++|++.|++||.|.+|++..+ +||+||.|+++|+|..||..+|+..|.|+.+++.|.+....
T Consensus 168 Y~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 168 YVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred EeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 99999999999999999999999999999988 58999999999999999999999999999999999986554
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.89 E-value=1.5e-22 Score=166.93 Aligned_cols=81 Identities=27% Similarity=0.445 Sum_probs=78.2
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccC
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVK 138 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~ 138 (192)
.+|||+|||+++++++|+++|++||.|.+++|+.|+.||.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|+..+
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q psy15152 139 G 139 (192)
Q Consensus 139 ~ 139 (192)
.
T Consensus 350 ~ 350 (352)
T TIGR01661 350 A 350 (352)
T ss_pred C
Confidence 4
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.89 E-value=1.3e-22 Score=175.14 Aligned_cols=134 Identities=25% Similarity=0.325 Sum_probs=107.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcccC---CCCCCCCC-----C----------CCCCCCcEEEEcCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE--IREYESMET---DVGDEEPG-----P----------QRSVEGWILFVTGV 66 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~~---~~~~~~~~-----~----------~~~~~~~~l~V~nL 66 (192)
+.+|.+++|+.+++ +||||||+|...+ ..++..++. .+...... + ......++|||+||
T Consensus 134 I~sV~I~~D~~Tgk-skGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnL 212 (612)
T TIGR01645 134 IKSINMSWDPATGK-HKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASV 212 (612)
T ss_pred EEEEEEeecCCCCC-cCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecC
Confidence 56899999999995 9999999994443 333333322 12111000 0 01123478999999
Q ss_pred CCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCCC
Q psy15152 67 HEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGPK 141 (192)
Q Consensus 67 p~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~~ 141 (192)
|+++++++|+++|+.||.|.++++..|+.+|+++|||||+|.+.++|.+|++.||+..|+|+.|+|.++.+++..
T Consensus 213 p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 213 HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 999999999999999999999999999989999999999999999999999999999999999999999875543
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=5.3e-21 Score=138.78 Aligned_cols=87 Identities=20% Similarity=0.427 Sum_probs=81.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
...+++|||+|||+++++++|+++|++||.|.++.++.|+.+++++|||||+|.+.++|++|++.|++..|.|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy15152 135 CFVKGPK 141 (192)
Q Consensus 135 a~~~~~~ 141 (192)
+.++...
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9866543
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.86 E-value=9.4e-21 Score=161.44 Aligned_cols=131 Identities=18% Similarity=0.376 Sum_probs=104.2
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCC-ChhHHHhhhcccCC---CCC----------------CCCCCCCCCCCcEEEEcC
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETS-TRNEIREYESMETD---VGD----------------EEPGPQRSVEGWILFVTG 65 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f-~~~~~~~~~~~~~~---~~~----------------~~~~~~~~~~~~~l~V~n 65 (192)
.+.+|.+++|+.++. ++|||||+| +.+.+..+..++.. +.. ............+|||+|
T Consensus 115 ~v~~v~i~~d~~~~~-skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~n 193 (457)
T TIGR01622 115 KVRDVQCIKDRNSRR-SKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGN 193 (457)
T ss_pred CeeEEEEeecCCCCC-cceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcC
Confidence 357899999999995 999999999 33333222222211 100 000011112357899999
Q ss_pred CCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 66 VHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 66 Lp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
||..+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|+|..|.|+.|.|.|+..
T Consensus 194 l~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 194 LHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 999999999999999999999999999998999999999999999999999999999999999999999763
No 8
>KOG0144|consensus
Probab=99.85 E-value=1.3e-21 Score=158.51 Aligned_cols=136 Identities=25% Similarity=0.340 Sum_probs=108.3
Q ss_pred eeeEEeeccCcCCCCCCccCCCC-C-hhHHHhhhcccC----CC-------CCCCCCCCCCCCCcEEEEcCCCCCCcHHH
Q psy15152 8 KGIARLKEKARKKKGRGFGTETS-T-RNEIREYESMET----DV-------GDEEPGPQRSVEGWILFVTGVHEEAQEDD 74 (192)
Q Consensus 8 ~~v~~~~d~~~~~k~rG~gfv~f-~-~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 74 (192)
-.|.+++|+.|+. ++|++||.| . .++..+..++.. .| ...+....+-.+.++||||-|+..++|.+
T Consensus 62 ~einl~kDk~t~~-s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~e 140 (510)
T KOG0144|consen 62 YEINLIKDKSTGQ-SKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENE 140 (510)
T ss_pred eEEEeecccccCc-ccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHH
Confidence 4789999999996 999999999 3 333333333311 11 11111122334578899999999999999
Q ss_pred HHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCe-eCC--eEEEEEecccCCCCCCCC
Q psy15152 75 MHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTT-ILG--QTVTVDWCFVKGPKKVAG 145 (192)
Q Consensus 75 L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~-~~g--~~l~v~~a~~~~~~~~~~ 145 (192)
++++|++||.|++|.|++|. .|.+||||||.|.+++.|..|++.|||.. +.| .+|.|+||.++.++..+.
T Consensus 141 vr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 141 VREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred HHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 99999999999999999996 89999999999999999999999999986 544 699999999987766553
No 9
>KOG0145|consensus
Probab=99.84 E-value=6.3e-21 Score=146.03 Aligned_cols=133 Identities=21% Similarity=0.397 Sum_probs=109.5
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCCh--hHHHhhhcccCC--------CCCCCCCCCCCCCCcEEEEcCCCCCCcHHHH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTR--NEIREYESMETD--------VGDEEPGPQRSVEGWILFVTGVHEEAQEDDM 75 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 75 (192)
+++++++++|+.++. |-|||||.|.+ ++..+...+++- .+...|. .....+..|||++||..+|..+|
T Consensus 67 eiEScKLvRDKitGq-SLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS-s~~Ik~aNLYvSGlPktMtqkel 144 (360)
T KOG0145|consen 67 EIESCKLVRDKITGQ-SLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS-SDSIKDANLYVSGLPKTMTQKEL 144 (360)
T ss_pred ceeeeeeeecccccc-ccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC-hhhhcccceEEecCCccchHHHH
Confidence 478999999999997 99999999933 334444443322 2223333 33456678999999999999999
Q ss_pred HHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEecccCCC
Q psy15152 76 HEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG--QTVTVDWCFVKGP 140 (192)
Q Consensus 76 ~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g--~~l~v~~a~~~~~ 140 (192)
+++|++||.|...+|+.|..||.+||.|||.|+.+++|+.||..|||..-.| .+|.|+||.....
T Consensus 145 E~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 145 EQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred HHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 9999999999999999999999999999999999999999999999998766 5899999976543
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.84 E-value=4.3e-20 Score=152.33 Aligned_cols=131 Identities=25% Similarity=0.412 Sum_probs=105.2
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcccCC---CCCC-----CCCCCCCCCCcEEEEcCCCCCCcHHHHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE--IREYESMETD---VGDE-----EPGPQRSVEGWILFVTGVHEEAQEDDMH 76 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~~~---~~~~-----~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 76 (192)
+.+|.+++|+.+++ +||||||+|...+ ..++..++.. +... .+ ........+|||+|||..+++++|+
T Consensus 30 i~~v~i~~d~~~g~-s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~-~~~~~~~~~l~v~~l~~~~~~~~l~ 107 (352)
T TIGR01661 30 IESCKLVRDKVTGQ-SLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP-SSDSIKGANLYVSGLPKTMTQHELE 107 (352)
T ss_pred EEEEEEEEcCCCCc-cceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc-cccccccceEEECCccccCCHHHHH
Confidence 57899999999995 9999999994433 3333333322 1111 11 1122346789999999999999999
Q ss_pred HhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEecccCC
Q psy15152 77 EKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG--QTVTVDWCFVKG 139 (192)
Q Consensus 77 ~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g--~~l~v~~a~~~~ 139 (192)
++|++||.|..+.++.+..+|.++|||||+|.+.++|+.|++.|||..+.| .+|.|.|+....
T Consensus 108 ~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 108 SIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 999999999999999998889999999999999999999999999999887 678999887554
No 11
>KOG0117|consensus
Probab=99.83 E-value=1.4e-20 Score=153.14 Aligned_cols=130 Identities=21% Similarity=0.305 Sum_probs=108.0
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHHHhhhcccCC------------CCCCCCC----CCCCCCCcEEEEcCCCCCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEIREYESMETD------------VGDEEPG----PQRSVEGWILFVTGVHEEA 70 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~~~~~~~~~~------------~~~~~~~----~~~~~~~~~l~V~nLp~~~ 70 (192)
.++|.+..++..+.|+|||+||+|..+..+++....+- ..|.+|. ......-..|||+||+.++
T Consensus 192 VvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~t 271 (506)
T KOG0117|consen 192 VVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMEST 271 (506)
T ss_pred eeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhh
Confidence 46888999999998999999999987887777665332 1333332 2223334789999999999
Q ss_pred cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCCCCCC
Q psy15152 71 QEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGPKKVA 144 (192)
Q Consensus 71 t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~~~~~ 144 (192)
|++.|+++|.+||.|.+|+.++| ||||.|.++++|.+|++.+||..|+|..|.|.+|+|...++..
T Consensus 272 TeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 272 TEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred hHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 99999999999999999988766 9999999999999999999999999999999999987654443
No 12
>KOG0131|consensus
Probab=99.81 E-value=2.4e-20 Score=135.82 Aligned_cols=135 Identities=23% Similarity=0.364 Sum_probs=109.8
Q ss_pred eeeEEeeccCcCCCCCCccCCCCChhHHHhhhcc--cC---CC-----CCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHH
Q psy15152 8 KGIARLKEKARKKKGRGFGTETSTRNEIREYESM--ET---DV-----GDEEPGPQRSVEGWILFVTGVHEEAQEDDMHE 77 (192)
Q Consensus 8 ~~v~~~~d~~~~~k~rG~gfv~f~~~~~~~~~~~--~~---~~-----~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~ 77 (192)
.++.+.+|+.+. +++||||++|..++.++|+-. ++ .+ ++..........+.++||+||.+.+++..|.+
T Consensus 37 v~i~iPkDrv~~-~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~d 115 (203)
T KOG0131|consen 37 VNLHIPKDRVTQ-KHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYD 115 (203)
T ss_pred eeeecchhhhcc-cccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHH
Confidence 578999999999 599999999955555555432 21 11 12222222334468899999999999999999
Q ss_pred hhccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCCCCC
Q psy15152 78 KFSEYGEIKN-LHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGPKKV 143 (192)
Q Consensus 78 ~F~~~G~i~~-~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~~~~ 143 (192)
.|+.||.+.. -++++++.||.++|||||.|.+.+.+.+|+..|+|..+.++++.|.++..+..+..
T Consensus 116 tFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg~ 182 (203)
T KOG0131|consen 116 TFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKGE 182 (203)
T ss_pred HHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCcc
Confidence 9999999865 48899999999999999999999999999999999999999999999987766553
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.81 E-value=2.3e-19 Score=156.61 Aligned_cols=130 Identities=23% Similarity=0.384 Sum_probs=101.0
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH--HhhhcccC---C----CCCC-----CCCC-----------------CCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI--REYESMET---D----VGDE-----EPGP-----------------QRS 55 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~--~~~~~~~~---~----~~~~-----~~~~-----------------~~~ 55 (192)
+.++.+++|. ++ ++||||||+|...+. .+...++. . +... .... ...
T Consensus 205 i~~~~i~~~~-~g-~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~ 282 (562)
T TIGR01628 205 ITSAAVMKDG-SG-RSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMK 282 (562)
T ss_pred EEEEEEEECC-CC-CcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcc
Confidence 5678888885 46 499999999943332 23332221 1 1000 0000 012
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
..+.+|||+||+.++++++|+++|+.||.|.+++++.| .+|.++|||||+|.+.++|.+|+..|||..+.|++|.|.+|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34578999999999999999999999999999999999 58999999999999999999999999999999999999999
Q ss_pred ccCC
Q psy15152 136 FVKG 139 (192)
Q Consensus 136 ~~~~ 139 (192)
..+.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 8653
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.80 E-value=1.1e-18 Score=150.49 Aligned_cols=113 Identities=23% Similarity=0.339 Sum_probs=87.2
Q ss_pred CCCCccCCCCChhHHHhhhc--cc-----CCC-----CCCCCC----CCCCCCCcEEEEcCCCCCCcHHHHHHhhccC--
Q psy15152 21 KGRGFGTETSTRNEIREYES--ME-----TDV-----GDEEPG----PQRSVEGWILFVTGVHEEAQEDDMHEKFSEY-- 82 (192)
Q Consensus 21 k~rG~gfv~f~~~~~~~~~~--~~-----~~~-----~~~~~~----~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~-- 82 (192)
++|||+||+|..++.+..+. +. ..+ .+..+. +......++|||+||++++++++|+++|+.|
T Consensus 180 KnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~ 259 (578)
T TIGR01648 180 KNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKP 259 (578)
T ss_pred ccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 69999999995544433322 21 111 111221 1122345789999999999999999999999
Q ss_pred CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCCC
Q psy15152 83 GEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGPK 141 (192)
Q Consensus 83 G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~~ 141 (192)
|.|.+|.++ ++||||+|.+.++|++|++.||+..|.|+.|+|.||.+....
T Consensus 260 G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 260 GKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred CceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 999999765 459999999999999999999999999999999999886543
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.80 E-value=4.4e-19 Score=154.83 Aligned_cols=130 Identities=20% Similarity=0.341 Sum_probs=104.1
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCCh--hHHHhhhcccCC---CC-----CCCCCC-CCCCCCcEEEEcCCCCCCcHHHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTR--NEIREYESMETD---VG-----DEEPGP-QRSVEGWILFVTGVHEEAQEDDM 75 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~--~~~~~~~~~~~~---~~-----~~~~~~-~~~~~~~~l~V~nLp~~~t~~~L 75 (192)
+.+|.+++|+.|++ ++|||||+|.. ++..+++.++.. +. +....+ .+.....+|||+|||.++++++|
T Consensus 27 v~~v~v~~d~~t~~-s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L 105 (562)
T TIGR01628 27 VLSVRVCRDSVTRR-SLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKAL 105 (562)
T ss_pred EEEEEEEecCCCCC-cceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHH
Confidence 57899999999995 99999999933 444444444333 11 111111 11223457999999999999999
Q ss_pred HHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccC
Q psy15152 76 HEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVK 138 (192)
Q Consensus 76 ~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~ 138 (192)
+++|+.||.|..+++..+. +|+++|||||+|.+.++|++|++.|+|..+.|+.|.|.....+
T Consensus 106 ~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 106 FDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred HHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 9999999999999999985 8999999999999999999999999999999999999766544
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=3.6e-18 Score=140.23 Aligned_cols=86 Identities=23% Similarity=0.381 Sum_probs=80.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
......++|||+|||+++++++|+++|+.||.|.+|+|+.|+.+++++|||||+|.+.++|++|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccC
Q psy15152 133 DWCFVK 138 (192)
Q Consensus 133 ~~a~~~ 138 (192)
.|+.+.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998754
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.77 E-value=3e-18 Score=147.87 Aligned_cols=82 Identities=27% Similarity=0.383 Sum_probs=78.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
..+|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|+.|++.|+|..|.|+.|.|.++..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 47899999999999999999999999999999999998999999999999999999999999999999999999999975
Q ss_pred CC
Q psy15152 138 KG 139 (192)
Q Consensus 138 ~~ 139 (192)
..
T Consensus 375 ~~ 376 (509)
T TIGR01642 375 GA 376 (509)
T ss_pred CC
Confidence 43
No 18
>KOG0117|consensus
Probab=99.77 E-value=2.5e-18 Score=140.19 Aligned_cols=134 Identities=21% Similarity=0.316 Sum_probs=104.0
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHHHhhhcccCCCCCCCCCC----CCCCCCcEEEEcCCCCCCcHHHHHHhhccC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEIREYESMETDVGDEEPGP----QRSVEGWILFVTGVHEEAQEDDMHEKFSEY 82 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~ 82 (192)
|-++++|+|+.++. +|||+||+|...+.+..+....++....++. ..+...++|||||+|...++++|.+.+++.
T Consensus 110 I~elRLMmD~~sG~-nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kV 188 (506)
T KOG0117|consen 110 IYELRLMMDPFSGD-NRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKV 188 (506)
T ss_pred eeeEEEeecccCCC-CcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhh
Confidence 45789999999995 9999999994444333333333333344442 346778999999999999999999999998
Q ss_pred CC-eeEEEEeecCC-CCCcceEEEEEecCHHHHHHHHHHhCCC--eeCCeEEEEEecccCCCC
Q psy15152 83 GE-IKNLHLNLDRR-TGFLKGYALVEYDSYKEASAARDALNGT--TILGQTVTVDWCFVKGPK 141 (192)
Q Consensus 83 G~-i~~~~i~~~~~-tg~~~g~afV~f~~~~~a~~al~~l~~~--~~~g~~l~v~~a~~~~~~ 141 (192)
++ |.+|.+..++. ..++||||||+|.++..|..|-++|-.. .+.|..+.|+||.+....
T Consensus 189 teGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 189 TEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred CCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 75 66776655553 6789999999999999999999887443 478999999999987543
No 19
>KOG0122|consensus
Probab=99.76 E-value=2.6e-18 Score=130.48 Aligned_cols=83 Identities=31% Similarity=0.499 Sum_probs=80.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+.++|-|.||+.++++++|+++|.+||.|.++.+.+|+.||.++|||||.|.++++|.+||..|||.-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy15152 136 FVK 138 (192)
Q Consensus 136 ~~~ 138 (192)
.|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 20
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.76 E-value=9.1e-18 Score=106.63 Aligned_cols=70 Identities=31% Similarity=0.638 Sum_probs=67.3
Q ss_pred EEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 61 l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
|||+|||.++++++|+++|++||.|..+.+..+ .++..+|+|||+|.+.++|++|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5899999999999999999999999999999999885
No 21
>KOG0127|consensus
Probab=99.76 E-value=7e-18 Score=140.52 Aligned_cols=130 Identities=25% Similarity=0.448 Sum_probs=101.1
Q ss_pred eeEEeeccCcCCCCCCccCCCC--ChhHHHhhhcccC---CC-------------CC-CCC---------CCC-----C-
Q psy15152 9 GIARLKEKARKKKGRGFGTETS--TRNEIREYESMET---DV-------------GD-EEP---------GPQ-----R- 54 (192)
Q Consensus 9 ~v~~~~d~~~~~k~rG~gfv~f--~~~~~~~~~~~~~---~~-------------~~-~~~---------~~~-----~- 54 (192)
...+..++.+++ +||||||+| ..+...++...+. .+ +. ..+ ..+ .
T Consensus 34 ~~~vVt~~gs~~-~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~ 112 (678)
T KOG0127|consen 34 HAVVVTNKGSSE-KRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAK 112 (678)
T ss_pred eeEEecCCCccc-ccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhh
Confidence 456778889987 999999999 3333333333322 11 00 000 001 0
Q ss_pred -CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 55 -SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 55 -~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
..+.++|.|+||||.+.+.+|+.+|+.||.|..|.|++.+ .|+-+|||||+|....+|..|++.+|+..|+|++|.|+
T Consensus 113 v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVD 191 (678)
T KOG0127|consen 113 VDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVD 191 (678)
T ss_pred ccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEe
Confidence 1236899999999999999999999999999999999886 56666999999999999999999999999999999999
Q ss_pred ecccCCC
Q psy15152 134 WCFVKGP 140 (192)
Q Consensus 134 ~a~~~~~ 140 (192)
||.++..
T Consensus 192 WAV~Kd~ 198 (678)
T KOG0127|consen 192 WAVDKDT 198 (678)
T ss_pred eeccccc
Confidence 9987754
No 22
>KOG0149|consensus
Probab=99.75 E-value=8e-18 Score=127.30 Aligned_cols=82 Identities=24% Similarity=0.386 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
.-++||||+|+|.+..++|+++|++||+|.+..++.|+.||++||||||+|.+.++|.+|++- .+-.|+||+..+.+|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 347899999999999999999999999999999999999999999999999999999999985 6678999999999987
Q ss_pred cCC
Q psy15152 137 VKG 139 (192)
Q Consensus 137 ~~~ 139 (192)
-..
T Consensus 90 lg~ 92 (247)
T KOG0149|consen 90 LGG 92 (247)
T ss_pred hcC
Confidence 633
No 23
>KOG0124|consensus
Probab=99.75 E-value=6.1e-18 Score=135.14 Aligned_cols=133 Identities=24% Similarity=0.318 Sum_probs=107.9
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHHH--hhhcccCC---CCCCCCCCCCCC---------------CCcEEEEcCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEIR--EYESMETD---VGDEEPGPQRSV---------------EGWILFVTGV 66 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~~--~~~~~~~~---~~~~~~~~~~~~---------------~~~~l~V~nL 66 (192)
|++|++.+|+.|+ |++||+||+|+.++.+ +.+.+++. |.....+..... .-++|||..+
T Consensus 140 IKSInMSWDp~T~-kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSv 218 (544)
T KOG0124|consen 140 IKSINMSWDPATG-KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASV 218 (544)
T ss_pred cceeecccccccc-cccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeec
Confidence 5799999999999 6999999999655543 33444332 222222211111 1268999999
Q ss_pred CCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCC
Q psy15152 67 HEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGP 140 (192)
Q Consensus 67 p~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~ 140 (192)
+++.+++||+.+|..||+|..|.+.+++.++.++||||++|.+..+...|+..||-..++|+.|+|..+...+.
T Consensus 219 HpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 219 HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred CCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCc
Confidence 99999999999999999999999999998899999999999999999999999999999999999987765543
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=3e-17 Score=141.65 Aligned_cols=129 Identities=23% Similarity=0.380 Sum_probs=96.4
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcccCCCCCCCC----CCCCCCCCcEEEEcCCCCCCcHHHHHHhhc
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE--IREYESMETDVGDEEP----GPQRSVEGWILFVTGVHEEAQEDDMHEKFS 80 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 80 (192)
+.++++++| .+++ +|||+||+|...+ ..++..++... ..+ ....+...++|||+|||.++++++|.+.|+
T Consensus 85 I~~vrl~~D-~sG~-sRGfaFV~F~~~e~A~~Ai~~lng~~--i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFs 160 (578)
T TIGR01648 85 IYELRLMMD-FSGQ-NRGYAFVTFCGKEEAKEAVKLLNNYE--IRPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFS 160 (578)
T ss_pred EEEEEEEEC-CCCC-ccceEEEEeCCHHHHHHHHHHcCCCe--ecCCccccccccccCceeEeecCCcchhhHHHHHHhh
Confidence 568899999 7885 9999999994443 33444443221 111 122344578999999999999999999999
Q ss_pred cCCC-eeEEEE-eecCCCCCcceEEEEEecCHHHHHHHHHHhCC--CeeCCeEEEEEecccCC
Q psy15152 81 EYGE-IKNLHL-NLDRRTGFLKGYALVEYDSYKEASAARDALNG--TTILGQTVTVDWCFVKG 139 (192)
Q Consensus 81 ~~G~-i~~~~i-~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~--~~~~g~~l~v~~a~~~~ 139 (192)
+++. +.++.+ .....+++++|||||+|.++++|..|++.|+. ..+.|+.|.|+|+.+..
T Consensus 161 kv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 161 KVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred cccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 9864 444433 23334678899999999999999999998864 35889999999998764
No 25
>KOG0121|consensus
Probab=99.73 E-value=9.6e-18 Score=115.76 Aligned_cols=83 Identities=25% Similarity=0.402 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
..+++||||||.+.++|++|.++|+..|+|..|.+-.|+.+..+.|||||+|.+.++|+.|++.++|..++.++|+++|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccC
Q psy15152 136 FVK 138 (192)
Q Consensus 136 ~~~ 138 (192)
..-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 543
No 26
>KOG0147|consensus
Probab=99.73 E-value=7.7e-18 Score=140.39 Aligned_cols=129 Identities=18% Similarity=0.309 Sum_probs=105.5
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCC-ChhHHHhhhcccCCC----------------------CCCCCCCCCCCCCcEEE
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETS-TRNEIREYESMETDV----------------------GDEEPGPQRSVEGWILF 62 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f-~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~ 62 (192)
++.+|.++.|+.+++ ++|.+||+| +.+......++.+.. .+..++ .-..+...||
T Consensus 205 kVrdVriI~Dr~s~r-skgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k-~~~~p~~rl~ 282 (549)
T KOG0147|consen 205 KVRDVRIIGDRNSRR-SKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANASPALQGK-GFTGPMRRLY 282 (549)
T ss_pred CcceeEeeccccchh-hcceeEEEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHhcccccccc-ccccchhhhh
Confidence 567999999999998 999999999 655555444544331 001101 1112233499
Q ss_pred EcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 63 VTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 63 V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
||||++.+++++|+.+|.+||.|..|.+.+|..||.++|||||+|.+.++|.+|++.|||..|.|+.|+|..-.
T Consensus 283 vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 283 VGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 99999999999999999999999999999998899999999999999999999999999999999999997554
No 27
>KOG0145|consensus
Probab=99.72 E-value=4.5e-17 Score=124.99 Aligned_cols=82 Identities=28% Similarity=0.482 Sum_probs=78.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
.+++|||-||.++.+|.-|+++|.+||.|..+++++|..|.+.+|||||...+.++|..|+..|||..++++.|.|.|..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 36899999999999999999999999999999999999899999999999999999999999999999999999999876
Q ss_pred cC
Q psy15152 137 VK 138 (192)
Q Consensus 137 ~~ 138 (192)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 54
No 28
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.71 E-value=1.6e-16 Score=101.26 Aligned_cols=70 Identities=27% Similarity=0.579 Sum_probs=65.1
Q ss_pred EEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 61 l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
|||+|||+++++++|.++|+.||.|..+.+..++. |..+|+|||+|.+.++|++|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 99999999999999999999999999999999885
No 29
>KOG4205|consensus
Probab=99.68 E-value=1.4e-16 Score=127.94 Aligned_cols=137 Identities=20% Similarity=0.320 Sum_probs=110.8
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhHH-H---hhhcccCCCCCCCCCCCCC----------CCCcEEEEcCCCCCCc
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNEI-R---EYESMETDVGDEEPGPQRS----------VEGWILFVTGVHEEAQ 71 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~~-~---~~~~~~~~~~~~~~~~~~~----------~~~~~l~V~nLp~~~t 71 (192)
.+.+..+++|+.++| +|||+||+|+.+.. . ....+.+++...++.++.+ ....++||++||.+++
T Consensus 32 ev~d~~vm~d~~t~r-srgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~ 110 (311)
T KOG4205|consen 32 EVTDCVVMRDPSTGR-SRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTT 110 (311)
T ss_pred ceeeEEEeccCCCCC-cccccceecCCCcchheeecccccccCCccccceeccCcccccccccccceeEEEecCcCCCCc
Confidence 356789999999997 99999999964432 2 2223345554444443222 1245899999999999
Q ss_pred HHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCCCCCC
Q psy15152 72 EDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGPKKVA 144 (192)
Q Consensus 72 ~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~~~~~ 144 (192)
+++++++|.+||.|..+.+++|..+.+++||+||.|.+.+++.+++. ..-+.|.|+.+.|..|.|+......
T Consensus 111 e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 111 EEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred hHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcccc
Confidence 99999999999999999999999999999999999999999999887 4788899999999999988765544
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=1.7e-16 Score=137.42 Aligned_cols=80 Identities=29% Similarity=0.466 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
..++|||+|||+++++++|+++|++||.|.++.++.|+.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998654
No 31
>KOG0148|consensus
Probab=99.68 E-value=1.1e-16 Score=123.35 Aligned_cols=82 Identities=26% Similarity=0.490 Sum_probs=79.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
..-+||+.|...++.++|++.|.+||+|.++++++|..|+++||||||.|.+.++|+.||..|||..|++|.|+..||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy15152 138 KG 139 (192)
Q Consensus 138 ~~ 139 (192)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 76
No 32
>KOG0107|consensus
Probab=99.67 E-value=2.7e-16 Score=114.12 Aligned_cols=78 Identities=22% Similarity=0.451 Sum_probs=72.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
.++||||||+..+++.+|+..|..||.+..+.|...+ .|||||+|+++.+|+.|+..|+|..|.|..|+|+++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 5789999999999999999999999999999998765 79999999999999999999999999999999999876
Q ss_pred CCC
Q psy15152 138 KGP 140 (192)
Q Consensus 138 ~~~ 140 (192)
...
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 543
No 33
>KOG0113|consensus
Probab=99.67 E-value=7.9e-16 Score=120.04 Aligned_cols=89 Identities=30% Similarity=0.431 Sum_probs=82.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+-+||||+-|+.+++|..|+..|+.||.|..|+|+.|+.||+++|||||+|....+...|.+..+|..|+|+.|.|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCC
Q psy15152 134 WCFVKGPKK 142 (192)
Q Consensus 134 ~a~~~~~~~ 142 (192)
+....-.+.
T Consensus 177 vERgRTvkg 185 (335)
T KOG0113|consen 177 VERGRTVKG 185 (335)
T ss_pred ecccccccc
Confidence 886554443
No 34
>KOG0111|consensus
Probab=99.66 E-value=9.5e-17 Score=120.47 Aligned_cols=89 Identities=27% Similarity=0.516 Sum_probs=83.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
...++||||+|..++++.-|...|-+||.|.+|.++.|..++++||||||+|...|+|.+||..||+..|.|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q psy15152 136 FVKGPKKVA 144 (192)
Q Consensus 136 ~~~~~~~~~ 144 (192)
.|..-+...
T Consensus 88 kP~kikegs 96 (298)
T KOG0111|consen 88 KPEKIKEGS 96 (298)
T ss_pred CCccccCCC
Confidence 987655444
No 35
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.66 E-value=9.6e-16 Score=119.32 Aligned_cols=77 Identities=27% Similarity=0.272 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
.++|||+|||+.+++++|+++|+.||.|.++.|+.++. .+|||||+|.+.++|+.|+. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 56899999999999999999999999999999998863 47899999999999999996 999999999999999864
Q ss_pred C
Q psy15152 138 K 138 (192)
Q Consensus 138 ~ 138 (192)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 36
>KOG0125|consensus
Probab=99.65 E-value=6.9e-16 Score=121.75 Aligned_cols=81 Identities=20% Similarity=0.363 Sum_probs=75.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
.++|||+|+|+...+.||+.+|.+||.|.+|.|+.+. ..+||||||+|++.++|++|-++|||..+.||+|.|..|..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3789999999999999999999999999999999883 55799999999999999999999999999999999999987
Q ss_pred CCC
Q psy15152 138 KGP 140 (192)
Q Consensus 138 ~~~ 140 (192)
+-.
T Consensus 174 rV~ 176 (376)
T KOG0125|consen 174 RVH 176 (376)
T ss_pred hhc
Confidence 643
No 37
>KOG4207|consensus
Probab=99.64 E-value=3.4e-16 Score=116.42 Aligned_cols=89 Identities=25% Similarity=0.407 Sum_probs=81.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
|........|-|-||.+.++.++|+.+|++||.|-+|.|+.|+.|+.++|||||-|....+|+.|+++|+|.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 33344457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCC
Q psy15152 132 VDWCFVKGP 140 (192)
Q Consensus 132 v~~a~~~~~ 140 (192)
|.+|.-...
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 998875443
No 38
>PLN03213 repressor of silencing 3; Provisional
Probab=99.64 E-value=9.2e-16 Score=126.93 Aligned_cols=78 Identities=21% Similarity=0.370 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCH--HHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSY--KEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~--~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
.+.+||||||++.+++++|..+|+.||.|.++.|+ +.+| ||||||+|.+. .++.+||..|||..++|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34689999999999999999999999999999999 4577 99999999987 789999999999999999999998
Q ss_pred cccC
Q psy15152 135 CFVK 138 (192)
Q Consensus 135 a~~~ 138 (192)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8653
No 39
>KOG0123|consensus
Probab=99.64 E-value=1.7e-15 Score=125.24 Aligned_cols=126 Identities=23% Similarity=0.381 Sum_probs=102.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCC--ChhHHHhhhcccCCCCCCCCC---CCCCCCCcEEEEcCCCCCCcHHHHHHhhcc
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETS--TRNEIREYESMETDVGDEEPG---PQRSVEGWILFVTGVHEEAQEDDMHEKFSE 81 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 81 (192)
..+|++.+|. | +-|||||.| -.++..+++.++...-...+- .... +...+||.||+++++..+|.++|+.
T Consensus 25 v~s~rvc~d~-t---slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r-d~~~~~i~nl~~~~~~~~~~d~f~~ 99 (369)
T KOG0123|consen 25 VLSIRVCRDA-T---SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR-DPSLVFIKNLDESIDNKSLYDTFSE 99 (369)
T ss_pred ceeEEEeecC-C---ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc-CCceeeecCCCcccCcHHHHHHHHh
Confidence 4689999999 7 899999999 445566667776654222221 1111 1223999999999999999999999
Q ss_pred CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCC
Q psy15152 82 YGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGP 140 (192)
Q Consensus 82 ~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~ 140 (192)
||.|.+|++..+. .| ++|| ||+|++.++|++|++.|||..+.|+.|.|.....+..
T Consensus 100 ~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 100 FGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred hcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999996 66 9999 9999999999999999999999999999988776543
No 40
>KOG0126|consensus
Probab=99.64 E-value=5.4e-17 Score=118.42 Aligned_cols=85 Identities=34% Similarity=0.525 Sum_probs=78.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
-.++.-|||||||++.||.||.-+|++||+|.+|.+++|+.||+++||||+.|++..+.--|+..|||..|.|+.|+|+.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCC
Q psy15152 135 CFVKG 139 (192)
Q Consensus 135 a~~~~ 139 (192)
...-.
T Consensus 112 v~~Yk 116 (219)
T KOG0126|consen 112 VSNYK 116 (219)
T ss_pred ccccc
Confidence 65443
No 41
>smart00362 RRM_2 RNA recognition motif.
Probab=99.61 E-value=5.5e-15 Score=93.23 Aligned_cols=72 Identities=38% Similarity=0.666 Sum_probs=67.5
Q ss_pred EEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 60 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
+|||+|||..+++++|+++|.+||.+..+.+..++ +.++|+|||+|.+.++|++|++.+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998875 7789999999999999999999999999999998873
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.61 E-value=7.7e-15 Score=125.98 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCC--eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE-----
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGE--IKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT----- 129 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~--i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~----- 129 (192)
++.+|||+|||.++++++|+++|+.||. |..+++.... ++ .+|+|||+|.+.++|.+|+..||+..|.|+.
T Consensus 393 ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~ 470 (481)
T TIGR01649 393 PSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPY 470 (481)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccc
Confidence 4578999999999999999999999998 7888876543 33 5799999999999999999999999999985
Q ss_pred -EEEEecccC
Q psy15152 130 -VTVDWCFVK 138 (192)
Q Consensus 130 -l~v~~a~~~ 138 (192)
|+|.|+.++
T Consensus 471 ~lkv~fs~~~ 480 (481)
T TIGR01649 471 HLKVSFSTSR 480 (481)
T ss_pred eEEEEeccCC
Confidence 999988653
No 43
>KOG0114|consensus
Probab=99.61 E-value=8.6e-15 Score=97.65 Aligned_cols=83 Identities=22% Similarity=0.387 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
.......|||.|||+.+|.++..++|.+||.|..|++-..+.| +|-|||.|++..+|.+|++.|+|..+.++.|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 3344678999999999999999999999999999999776655 8999999999999999999999999999999999
Q ss_pred ecccCC
Q psy15152 134 WCFVKG 139 (192)
Q Consensus 134 ~a~~~~ 139 (192)
+-.+..
T Consensus 91 yyq~~~ 96 (124)
T KOG0114|consen 91 YYQPED 96 (124)
T ss_pred ecCHHH
Confidence 877653
No 44
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=6.6e-15 Score=125.59 Aligned_cols=83 Identities=27% Similarity=0.380 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..+..+|||+|||..+++++|+++|+.||.|..|.++.|+.+|+++|||||+|.+.++|++||. |+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3456799999999999999999999999999999999999999999999999999999999996 899999999999988
Q ss_pred cccC
Q psy15152 135 CFVK 138 (192)
Q Consensus 135 a~~~ 138 (192)
+...
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 7543
No 45
>KOG0110|consensus
Probab=99.60 E-value=1.5e-15 Score=130.03 Aligned_cols=130 Identities=21% Similarity=0.381 Sum_probs=100.3
Q ss_pred eEEeeccCcCCCCCCccCCCCC--hhHHHhhhcccCC---CC-------C------CCCCCCCCCCCcEEEEcCCCCCCc
Q psy15152 10 IARLKEKARKKKGRGFGTETST--RNEIREYESMETD---VG-------D------EEPGPQRSVEGWILFVTGVHEEAQ 71 (192)
Q Consensus 10 v~~~~d~~~~~k~rG~gfv~f~--~~~~~~~~~~~~~---~~-------~------~~~~~~~~~~~~~l~V~nLp~~~t 71 (192)
|...+|+..+-.|.|||||+|. ..+..++..+.+. |. . .+.........++|+|.|||+..+
T Consensus 547 I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt 626 (725)
T KOG0110|consen 547 ISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEAT 626 (725)
T ss_pred EeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHH
Confidence 3444555545557799999993 3345555555422 21 0 111112223357899999999999
Q ss_pred HHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCC
Q psy15152 72 EDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKG 139 (192)
Q Consensus 72 ~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~ 139 (192)
..+++.+|..||.+..++|+.....+.++|||||+|-++.+|.+|+.+|..+.+.|++|.++||....
T Consensus 627 ~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 627 KREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 99999999999999999998886678889999999999999999999999999999999999997654
No 46
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.60 E-value=1.1e-14 Score=125.80 Aligned_cols=130 Identities=16% Similarity=0.217 Sum_probs=94.6
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcccCC---CCC-----------------CC---C-----C-----
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE--IREYESMETD---VGD-----------------EE---P-----G----- 51 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~~~---~~~-----------------~~---~-----~----- 51 (192)
+..+.+++|+.++. ++|||||+|.... ..++..++.. +.. .. + .
T Consensus 322 i~~~~~~~~~~~g~-~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (509)
T TIGR01642 322 LKAFNLIKDIATGL-SKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQS 400 (509)
T ss_pred eeEEEEEecCCCCC-cCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhh
Confidence 45788999999995 9999999994333 3333333221 100 00 0 0
Q ss_pred --CCCCCCCcEEEEcCCCCCC----------cHHHHHHhhccCCCeeEEEEeecC---CCCCcceEEEEEecCHHHHHHH
Q psy15152 52 --PQRSVEGWILFVTGVHEEA----------QEDDMHEKFSEYGEIKNLHLNLDR---RTGFLKGYALVEYDSYKEASAA 116 (192)
Q Consensus 52 --~~~~~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~i~~~~i~~~~---~tg~~~g~afV~f~~~~~a~~a 116 (192)
.....+..+|++.|+...- ..++|+++|++||.|..|.|+.+. .++...|++||+|.+.++|++|
T Consensus 401 ~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A 480 (509)
T TIGR01642 401 ILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKA 480 (509)
T ss_pred hccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHH
Confidence 0011245789999996421 135789999999999999998752 3466789999999999999999
Q ss_pred HHHhCCCeeCCeEEEEEeccc
Q psy15152 117 RDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 117 l~~l~~~~~~g~~l~v~~a~~ 137 (192)
+..|||..+.|+.|.|.|...
T Consensus 481 ~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 481 MEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHcCCCEECCeEEEEEEeCH
Confidence 999999999999999998753
No 47
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1e-14 Score=111.98 Aligned_cols=77 Identities=25% Similarity=0.258 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
..+++|||+||++.+|+++|+++|+.||+|.+|.|+.|. ..+|||||+|.++++|+.|+. |+|..|.+++|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 356899999999999999999999999999999999884 345899999999999999995 8999999999999865
Q ss_pred c
Q psy15152 136 F 136 (192)
Q Consensus 136 ~ 136 (192)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 4
No 48
>KOG0108|consensus
Probab=99.59 E-value=5.4e-15 Score=123.58 Aligned_cols=82 Identities=27% Similarity=0.425 Sum_probs=79.0
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccC
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVK 138 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~ 138 (192)
..+||||+|+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.++|+.|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CC
Q psy15152 139 GP 140 (192)
Q Consensus 139 ~~ 140 (192)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 49
>smart00360 RRM RNA recognition motif.
Probab=99.58 E-value=1e-14 Score=91.61 Aligned_cols=71 Identities=35% Similarity=0.630 Sum_probs=67.1
Q ss_pred EcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 63 VTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 63 V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|++.|++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988789999999999999999999999999999999998873
No 50
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=1.4e-14 Score=113.86 Aligned_cols=80 Identities=33% Similarity=0.537 Sum_probs=77.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
.++|||+|||..+++++|.++|..||.|..+.+..++.+|.++|||||+|.+.++|..|++.+++..+.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999753
No 51
>KOG0131|consensus
Probab=99.56 E-value=5.5e-15 Score=107.97 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
...+|||+||+..++++.|.++|-+.|+|.++.++.|+.+...+||||++|.++|+|+-|++.||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999887
No 52
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.54 E-value=9e-14 Score=88.07 Aligned_cols=74 Identities=31% Similarity=0.620 Sum_probs=68.8
Q ss_pred EEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 60 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
+|+|+|||..+++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998864 37789999999999999999999999999999999874
No 53
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.54 E-value=6.3e-14 Score=120.39 Aligned_cols=78 Identities=26% Similarity=0.412 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCC-CCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 56 VEGWILFVTGVHE-EAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 56 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
.++++|||+|||+ .+++++|+++|+.||.|.+++++.++ +|||||+|.+.++|+.|+..|||..|.|+.|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3568999999998 69999999999999999999998874 68999999999999999999999999999999999
Q ss_pred cccC
Q psy15152 135 CFVK 138 (192)
Q Consensus 135 a~~~ 138 (192)
+...
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8654
No 54
>KOG0146|consensus
Probab=99.53 E-value=1.1e-14 Score=112.24 Aligned_cols=88 Identities=26% Similarity=0.343 Sum_probs=82.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
..+++|+|||-.||.+..+.+|.+.|-+||.|.+.++..|+.|..+|+||||.|+++.+|++||.+|||..|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy15152 134 WCFVKGPK 141 (192)
Q Consensus 134 ~a~~~~~~ 141 (192)
..+|+...
T Consensus 361 LKRPkdan 368 (371)
T KOG0146|consen 361 LKRPKDAN 368 (371)
T ss_pred hcCccccC
Confidence 88777543
No 55
>KOG0144|consensus
Probab=99.52 E-value=3.1e-14 Score=116.05 Aligned_cols=86 Identities=30% Similarity=0.435 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCe-eC--CeEEEE
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTT-IL--GQTVTV 132 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~-~~--g~~l~v 132 (192)
.+.-++|||.+|..++|.||+++|++||.|.+|.|++|+.||.++|||||.|.+.++|.+|+.+||+.. |- ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 345679999999999999999999999999999999999999999999999999999999999998876 44 468999
Q ss_pred EecccCCCC
Q psy15152 133 DWCFVKGPK 141 (192)
Q Consensus 133 ~~a~~~~~~ 141 (192)
++|.....+
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 999876543
No 56
>KOG0415|consensus
Probab=99.50 E-value=4.3e-14 Score=112.82 Aligned_cols=92 Identities=22% Similarity=0.353 Sum_probs=85.2
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy15152 48 EEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG 127 (192)
Q Consensus 48 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g 127 (192)
+.|.....++.+.|||..|.+-++.++|.-+|+.||.|..|.+++|+.||.+..||||+|++.+++++|.-+|++..|++
T Consensus 229 DlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 229 DLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred CCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc
Confidence 45665666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecccCC
Q psy15152 128 QTVTVDWCFVKG 139 (192)
Q Consensus 128 ~~l~v~~a~~~~ 139 (192)
++|.|.|+.+-.
T Consensus 309 rRIHVDFSQSVs 320 (479)
T KOG0415|consen 309 RRIHVDFSQSVS 320 (479)
T ss_pred ceEEeehhhhhh
Confidence 999999987543
No 57
>KOG0105|consensus
Probab=99.48 E-value=2.3e-13 Score=99.91 Aligned_cols=80 Identities=19% Similarity=0.314 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
.+++|||+|||.++.+.+|+++|.+||.|..|.+..-+ ..-.||||+|++..+|+.||..-+|..++|.+|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 45789999999999999999999999999999875432 235699999999999999999999999999999999998
Q ss_pred cCC
Q psy15152 137 VKG 139 (192)
Q Consensus 137 ~~~ 139 (192)
...
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 654
No 58
>KOG0124|consensus
Probab=99.47 E-value=3.9e-14 Score=113.55 Aligned_cols=75 Identities=31% Similarity=0.557 Sum_probs=73.7
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
++||||.+.+...|+.|+..|.+||.|+++.+..|+.|++++|||||+|+-+|.|+-|++.|||..++||.|+|.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999996
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.47 E-value=3.9e-13 Score=81.92 Aligned_cols=56 Identities=30% Similarity=0.642 Sum_probs=50.8
Q ss_pred HHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 75 MHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 75 L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
|.++|++||.|.++.+..+. +++|||+|.+.++|+.|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987663 589999999999999999999999999999999986
No 60
>smart00361 RRM_1 RNA recognition motif.
Probab=99.46 E-value=3.8e-13 Score=85.79 Aligned_cols=61 Identities=25% Similarity=0.495 Sum_probs=55.6
Q ss_pred HHHHHHhhc----cCCCeeEEE-EeecCCC--CCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 72 EDDMHEKFS----EYGEIKNLH-LNLDRRT--GFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 72 ~~~L~~~F~----~~G~i~~~~-i~~~~~t--g~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
+++|+++|+ .||.|.++. +..++.+ +.++|||||+|.+.++|++|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 7777666 899999999999999999999999999999999986
No 61
>KOG0123|consensus
Probab=99.45 E-value=3.7e-13 Score=111.38 Aligned_cols=133 Identities=26% Similarity=0.398 Sum_probs=105.0
Q ss_pred ccceeeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcccCCCCC-------------------------CCCCCCCC
Q psy15152 3 ARFRLKGIARLKEKARKKKGRGFGTETSTRNE--IREYESMETDVGD-------------------------EEPGPQRS 55 (192)
Q Consensus 3 ~~~~~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~~~~~~-------------------------~~~~~~~~ 55 (192)
+...+.++.++.|...+ ++|||||.|...+ ......++..... ....+...
T Consensus 190 ~~g~i~s~~v~~~~~g~--~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~ 267 (369)
T KOG0123|consen 190 AYGSITSVAVMRDSIGK--SKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVS 267 (369)
T ss_pred ccCcceEEEEeecCCCC--CCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhcccc
Confidence 34567788888887766 8999999994433 3333333222100 11112234
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.....|||.||+..++.+.|.++|+.||.|..++++.+. .|+++||+||.|.+.++|..|+..+|+..+.++.|.|.++
T Consensus 268 ~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~ 346 (369)
T KOG0123|consen 268 LQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVA 346 (369)
T ss_pred ccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHH
Confidence 556789999999999999999999999999999999995 8999999999999999999999999999999999999988
Q ss_pred ccC
Q psy15152 136 FVK 138 (192)
Q Consensus 136 ~~~ 138 (192)
...
T Consensus 347 qr~ 349 (369)
T KOG0123|consen 347 QRK 349 (369)
T ss_pred hhh
Confidence 743
No 62
>KOG0127|consensus
Probab=99.44 E-value=1.3e-13 Score=115.42 Aligned_cols=85 Identities=19% Similarity=0.281 Sum_probs=80.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
+.||||++||++++.++|.++|+.+|+|..+.++.++.++.++|||||.|...+++++|+....+..+.|+.|+|..|..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCC
Q psy15152 138 KGPKK 142 (192)
Q Consensus 138 ~~~~~ 142 (192)
+....
T Consensus 85 R~r~e 89 (678)
T KOG0127|consen 85 RARSE 89 (678)
T ss_pred cccch
Confidence 65443
No 63
>KOG0109|consensus
Probab=99.41 E-value=1.8e-13 Score=106.69 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=73.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy15152 51 GPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTV 130 (192)
Q Consensus 51 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l 130 (192)
...++..+++|+|||+.+.++.++|+..|.+||.|.++.|+.| |+||.|+-.++|..|++.|++.++.|+++
T Consensus 71 SksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m 142 (346)
T KOG0109|consen 71 SKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRM 142 (346)
T ss_pred ccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccccccee
Confidence 3445557789999999999999999999999999999999855 99999999999999999999999999999
Q ss_pred EEEecccC
Q psy15152 131 TVDWCFVK 138 (192)
Q Consensus 131 ~v~~a~~~ 138 (192)
+|..+.++
T Consensus 143 ~vq~stsr 150 (346)
T KOG0109|consen 143 HVQLSTSR 150 (346)
T ss_pred eeeeeccc
Confidence 99988754
No 64
>KOG4208|consensus
Probab=99.37 E-value=2.8e-12 Score=95.65 Aligned_cols=84 Identities=21% Similarity=0.369 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccC-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEY-GEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
......+||..+|..+.+.++..+|.+| |.+..+++.+++.||.++|||||+|++.+.|+-|-+.||+..+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445569999999999999999999998 778888998999999999999999999999999999999999999999999
Q ss_pred ecccC
Q psy15152 134 WCFVK 138 (192)
Q Consensus 134 ~a~~~ 138 (192)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 88766
No 65
>KOG0109|consensus
Probab=99.32 E-value=3e-12 Score=99.92 Aligned_cols=72 Identities=25% Similarity=0.421 Sum_probs=68.2
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccC
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVK 138 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~ 138 (192)
.+|||||||..+++.+|+.+|++||+|.+|.|+.+ ||||..++...|+.||..|||..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999866 9999999999999999999999999999999988766
No 66
>KOG4212|consensus
Probab=99.31 E-value=8.2e-12 Score=102.33 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCcHHHHHHhhcc-CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSE-YGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
..+||.|+|+++.+++|+++|.+ .|+|+.|.++.|. +|+++|+|.|+|+++|.+++|++.||.+.+.|+.|.|+....
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 44999999999999999999985 8999999999995 999999999999999999999999999999999999986544
No 67
>KOG4206|consensus
Probab=99.28 E-value=1.6e-11 Score=92.87 Aligned_cols=80 Identities=24% Similarity=0.456 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCCCcHHHHHH----hhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 58 GWILFVTGVHEEAQEDDMHE----KFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~----~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
..||||.||+.-+..++|+. +|++||.|.+|... .|.+.+|-|||.|.+.+.|-.|+..|+|..+.|+.+++.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34899999999999988877 99999999998764 367889999999999999999999999999999999999
Q ss_pred ecccCCC
Q psy15152 134 WCFVKGP 140 (192)
Q Consensus 134 ~a~~~~~ 140 (192)
||..+..
T Consensus 86 yA~s~sd 92 (221)
T KOG4206|consen 86 YAKSDSD 92 (221)
T ss_pred cccCccc
Confidence 9987654
No 68
>KOG0146|consensus
Probab=99.26 E-value=8.1e-12 Score=96.65 Aligned_cols=85 Identities=27% Similarity=0.414 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCee-C--CeEEEEE
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTI-L--GQTVTVD 133 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~-~--g~~l~v~ 133 (192)
+.++||||-|...-.|+|++.+|..||.|.+|.+++.+ .|.+||+|||.|.+..+|+.||..|||... - ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56789999999999999999999999999999999997 899999999999999999999999999873 3 4689999
Q ss_pred ecccCCCCC
Q psy15152 134 WCFVKGPKK 142 (192)
Q Consensus 134 ~a~~~~~~~ 142 (192)
|+.....+.
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 998765443
No 69
>KOG0153|consensus
Probab=99.25 E-value=7.1e-11 Score=94.28 Aligned_cols=79 Identities=27% Similarity=0.490 Sum_probs=69.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh-CCCeeCCeEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL-NGTTILGQTVTV 132 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l-~~~~~~g~~l~v 132 (192)
......+|||++|...+++.+|+++|.+||+|..+.+... +++|||+|.++++|+.|.+.+ +...|+|++|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3344589999999999999999999999999999998766 469999999999999988755 555689999999
Q ss_pred EecccC
Q psy15152 133 DWCFVK 138 (192)
Q Consensus 133 ~~a~~~ 138 (192)
.|+.+.
T Consensus 298 ~Wg~~~ 303 (377)
T KOG0153|consen 298 KWGRPK 303 (377)
T ss_pred EeCCCc
Confidence 999983
No 70
>KOG0132|consensus
Probab=99.22 E-value=2.9e-11 Score=104.93 Aligned_cols=81 Identities=28% Similarity=0.535 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.-++|||||+|+..+++.+|..+|+.||+|.+|.++.. +|+|||......+|++|+.+|.+..+.++.|+|.||
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 34689999999999999999999999999999988766 689999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy15152 136 FVKGPKK 142 (192)
Q Consensus 136 ~~~~~~~ 142 (192)
..++.+.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 9887665
No 71
>KOG4205|consensus
Probab=99.22 E-value=1.2e-11 Score=99.56 Aligned_cols=85 Identities=24% Similarity=0.406 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
+.+++||++|+++++++.|++.|..||+|.++.+++|+.++.++||+||+|++.+...+++.. ..+.|+|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 567899999999999999999999999999999999999999999999999999999988864 6778999999999988
Q ss_pred cCCCCC
Q psy15152 137 VKGPKK 142 (192)
Q Consensus 137 ~~~~~~ 142 (192)
++....
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 776443
No 72
>KOG4661|consensus
Probab=99.14 E-value=1.9e-10 Score=97.18 Aligned_cols=87 Identities=22% Similarity=0.357 Sum_probs=79.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.-+..|||.+|...+...+|+.+|++||.|...+++.+..+...++|+||++.+.++|.+||+.||.+.|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34578999999999999999999999999999999999888888999999999999999999999999999999999998
Q ss_pred ccCCCCC
Q psy15152 136 FVKGPKK 142 (192)
Q Consensus 136 ~~~~~~~ 142 (192)
+..+...
T Consensus 483 KNEp~Gk 489 (940)
T KOG4661|consen 483 KNEPGGK 489 (940)
T ss_pred ccCcccc
Confidence 7655433
No 73
>KOG4212|consensus
Probab=99.13 E-value=2.2e-10 Score=94.04 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=70.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
......++|||+|||+++|++.|++-|..||.|....|+ ..|+++| .|.|.++++|++|+..|++..++|+.|.|
T Consensus 531 gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V 605 (608)
T KOG4212|consen 531 GAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKV 605 (608)
T ss_pred cccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeee
Confidence 344567899999999999999999999999999988883 3588887 89999999999999999999999999999
Q ss_pred Eec
Q psy15152 133 DWC 135 (192)
Q Consensus 133 ~~a 135 (192)
.|.
T Consensus 606 ~y~ 608 (608)
T KOG4212|consen 606 TYF 608 (608)
T ss_pred eeC
Confidence 873
No 74
>KOG0533|consensus
Probab=99.12 E-value=2.4e-10 Score=88.82 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=75.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
.++|+|.|||..+++++|+++|..||.+..+.+.+++ +|.+.|.|-|.|...++|.+|++.+++..++|+.+++....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 4789999999999999999999999999999999997 899999999999999999999999999999999999987765
Q ss_pred CC
Q psy15152 138 KG 139 (192)
Q Consensus 138 ~~ 139 (192)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 75
>KOG0110|consensus
Probab=99.11 E-value=2.2e-10 Score=98.73 Aligned_cols=78 Identities=23% Similarity=0.409 Sum_probs=70.2
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCC---CcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTG---FLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg---~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
++|||.||+++++.++|..+|...|.|..+.|...+... .+.|||||+|.+.++|++|++.|+|+.|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999887665221 24599999999999999999999999999999999999
Q ss_pred c
Q psy15152 136 F 136 (192)
Q Consensus 136 ~ 136 (192)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 76
>KOG0116|consensus
Probab=99.10 E-value=7.5e-10 Score=92.47 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=69.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
..+|||+|||++++..+|+++|..||.|+...|..-...++..+||||+|.+.++++.|+++ +-..|++++|.|+...+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34599999999999999999999999999887765432355559999999999999999997 67789999999998776
Q ss_pred CCC
Q psy15152 138 KGP 140 (192)
Q Consensus 138 ~~~ 140 (192)
...
T Consensus 367 ~~~ 369 (419)
T KOG0116|consen 367 GFR 369 (419)
T ss_pred ccc
Confidence 443
No 77
>KOG4209|consensus
Probab=99.07 E-value=7.1e-10 Score=86.22 Aligned_cols=88 Identities=26% Similarity=0.386 Sum_probs=80.6
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
+...+...+||+|+.+.++.+++..+|+.+|.|..+.++.|+.+|.++||+||+|.+.+.++.|+. |++..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 455667889999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred EecccCCCC
Q psy15152 133 DWCFVKGPK 141 (192)
Q Consensus 133 ~~a~~~~~~ 141 (192)
.+.....+.
T Consensus 175 t~~r~~~pg 183 (231)
T KOG4209|consen 175 TLKRTNVPG 183 (231)
T ss_pred eeeeeecCC
Confidence 988766433
No 78
>KOG0226|consensus
Probab=99.03 E-value=3.9e-10 Score=86.71 Aligned_cols=83 Identities=19% Similarity=0.348 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
...+||+|.|.-+++++.|...|.+|-.-...++++|..||+++||+||.|.+..++.+|+..|+|..++.++|+++-+.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 35789999999999999999999999888888999999999999999999999999999999999999999999998766
Q ss_pred cCC
Q psy15152 137 VKG 139 (192)
Q Consensus 137 ~~~ 139 (192)
.+.
T Consensus 269 wke 271 (290)
T KOG0226|consen 269 WKE 271 (290)
T ss_pred HHh
Confidence 554
No 79
>KOG1457|consensus
Probab=99.00 E-value=5.6e-09 Score=79.10 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=68.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeec-CCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC---CeEEEEE
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLD-RRTGFLKGYALVEYDSYKEASAARDALNGTTIL---GQTVTVD 133 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~-~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~---g~~l~v~ 133 (192)
-+||||.+||.++...+|..+|..|-.-+.+.+.+. +.....+-+||+.|.+.++|++|+..|||..++ +..|+++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 578999999999999999999999876665554332 211223469999999999999999999999986 8899999
Q ss_pred ecccCCCC
Q psy15152 134 WCFVKGPK 141 (192)
Q Consensus 134 ~a~~~~~~ 141 (192)
+|+.....
T Consensus 114 lAKSNtK~ 121 (284)
T KOG1457|consen 114 LAKSNTKR 121 (284)
T ss_pred ehhcCccc
Confidence 99876543
No 80
>KOG4211|consensus
Probab=98.92 E-value=9.9e-09 Score=85.53 Aligned_cols=79 Identities=20% Similarity=0.252 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKN-LHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
.....|-+++||+.|+++||.+||+..--+.. +.++.++ .+++.|-|||.|++.+.|+.|+.. |...|..+.|.|..
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 34567999999999999999999998744444 5566775 788999999999999999999986 88889999999976
Q ss_pred cc
Q psy15152 135 CF 136 (192)
Q Consensus 135 a~ 136 (192)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 53
No 81
>KOG0106|consensus
Probab=98.89 E-value=3.1e-09 Score=81.07 Aligned_cols=72 Identities=24% Similarity=0.493 Sum_probs=66.1
Q ss_pred EEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCC
Q psy15152 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKG 139 (192)
Q Consensus 60 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~ 139 (192)
.+|||+||+.+.+.+|+++|..||.+.++.+. .||+||+|.+..+|..|+..||+..|.|..+.|+|+....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 59999999999999999999999999988763 4689999999999999999999999999999999998643
No 82
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.88 E-value=2.6e-08 Score=67.01 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=70.0
Q ss_pred cEEEEcCCCCCCcHHHHHHhhcc--CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC----CeEEEE
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSE--YGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL----GQTVTV 132 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~--~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~----g~~l~v 132 (192)
+||.|+|+|...|.++|.+++.. .|...-+-++.|..++.+.|||||.|.+++.|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999888765 466777889999989999999999999999999999999999875 567888
Q ss_pred EecccC
Q psy15152 133 DWCFVK 138 (192)
Q Consensus 133 ~~a~~~ 138 (192)
.||.-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888644
No 83
>KOG0151|consensus
Probab=98.78 E-value=3.4e-08 Score=85.58 Aligned_cols=82 Identities=15% Similarity=0.298 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRR---TGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~---tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
..+.+||+||++.++++.|...|..||+|..++++..+. ....+-+|||.|-+..+|++|++.|+|..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 347899999999999999999999999999999987762 33456799999999999999999999999999999999
Q ss_pred ecccC
Q psy15152 134 WCFVK 138 (192)
Q Consensus 134 ~a~~~ 138 (192)
|+.+-
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 99543
No 84
>KOG4660|consensus
Probab=98.74 E-value=8.3e-09 Score=87.09 Aligned_cols=72 Identities=25% Similarity=0.401 Sum_probs=65.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
.....+|+|-|||.++++++|.++|+.||+|..++.-. -.+|..||+|.+..+|++|+++|++..+.|++|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34457899999999999999999999999999977544 4489999999999999999999999999999988
No 85
>KOG1548|consensus
Probab=98.68 E-value=7.8e-08 Score=77.11 Aligned_cols=80 Identities=25% Similarity=0.336 Sum_probs=71.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIK--------NLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT 129 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~ 129 (192)
.+.|||.|||.++|.+++.++|+++|-|. .|++-++. .|..+|=|++.|-..++..-|++.|++..+.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 35699999999999999999999999875 36777774 6999999999999999999999999999999999
Q ss_pred EEEEecccC
Q psy15152 130 VTVDWCFVK 138 (192)
Q Consensus 130 l~v~~a~~~ 138 (192)
|+|..|.-.
T Consensus 213 ~rVerAkfq 221 (382)
T KOG1548|consen 213 LRVERAKFQ 221 (382)
T ss_pred EEEehhhhh
Confidence 999988643
No 86
>KOG4211|consensus
Probab=98.67 E-value=8.7e-08 Score=80.02 Aligned_cols=79 Identities=23% Similarity=0.253 Sum_probs=67.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
..-|-+++|||++|+++|.+||+.. .|.++.+. +.+|+..|-|||+|.+.+++++|++. +...+..+.|.|--+..
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIP--RRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGG 85 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEe--ccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCC
Confidence 4557789999999999999999988 67775544 44899999999999999999999985 88889999999988766
Q ss_pred CCC
Q psy15152 138 KGP 140 (192)
Q Consensus 138 ~~~ 140 (192)
...
T Consensus 86 ~e~ 88 (510)
T KOG4211|consen 86 AEA 88 (510)
T ss_pred ccc
Confidence 554
No 87
>KOG1190|consensus
Probab=98.67 E-value=3.4e-07 Score=75.03 Aligned_cols=77 Identities=22% Similarity=0.425 Sum_probs=70.0
Q ss_pred CcEEEEcCCCCC-CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 58 GWILFVTGVHEE-AQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 58 ~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
...|.|.||... +|.+.|..+|+.||.|.+|+|+.++ +--|+|.|.+...|+-|++.|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 478889999875 9999999999999999999999986 3579999999999999999999999999999999987
Q ss_pred cCC
Q psy15152 137 VKG 139 (192)
Q Consensus 137 ~~~ 139 (192)
-..
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 543
No 88
>KOG4454|consensus
Probab=98.61 E-value=1.8e-08 Score=76.16 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
...+|||+|+...++++-|.++|-.-|.|..+.|..++ .+..+ ||||.|.++.+..-|++-|||..+.++.+.+.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 45789999999999999999999999999999998886 67777 99999999999999999999999998888876543
No 89
>KOG0120|consensus
Probab=98.55 E-value=5.6e-08 Score=82.49 Aligned_cols=83 Identities=28% Similarity=0.383 Sum_probs=78.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
..+.+||++||...++.++.++...||.+....+..|..+|.++||||.+|.+......|+..|||..++++.|.|..|.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCC
Q psy15152 137 VKG 139 (192)
Q Consensus 137 ~~~ 139 (192)
...
T Consensus 368 ~g~ 370 (500)
T KOG0120|consen 368 VGA 370 (500)
T ss_pred ccc
Confidence 654
No 90
>KOG0106|consensus
Probab=98.50 E-value=1.5e-07 Score=71.96 Aligned_cols=74 Identities=22% Similarity=0.390 Sum_probs=64.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
....+.+.|.+++..+.+.+|.++|.++|.+..... ..+++||+|.+.++|..|+..|++..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 344678999999999999999999999999954433 256999999999999999999999999999999954
Q ss_pred cc
Q psy15152 135 CF 136 (192)
Q Consensus 135 a~ 136 (192)
..
T Consensus 168 ~~ 169 (216)
T KOG0106|consen 168 NS 169 (216)
T ss_pred cC
Confidence 43
No 91
>KOG1456|consensus
Probab=98.42 E-value=4e-06 Score=68.19 Aligned_cols=123 Identities=17% Similarity=0.155 Sum_probs=89.1
Q ss_pred CCCCCCcEEEEcCCCCC-CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 53 QRSVEGWILFVTGVHEE-AQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
....+++.+.|-+|... ++.+.|..+|-.||.|.+|++++.+ .|-|.|+..+..+.++|+..||+..+-|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 44566789999999986 7778899999999999999998876 57899999999999999999999999999999
Q ss_pred EEecccCCCCCCCC--CCCCCCCCCccccCCccccccccCCccccccCccc
Q psy15152 132 VDWCFVKGPKKVAG--EQKVGPEGGVKVLFPVIMYSTETSMSTTLYNAPWI 180 (192)
Q Consensus 132 v~~a~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~p~~ 180 (192)
|..++..--....+ -...++.-.-.+.+.+..+++..+.+...+++|..
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~ 407 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSN 407 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcc
Confidence 98886544332222 11122222223334444455555555555555543
No 92
>KOG4206|consensus
Probab=98.42 E-value=2.6e-06 Score=64.84 Aligned_cols=77 Identities=30% Similarity=0.460 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL-GQTVTVD 133 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~-g~~l~v~ 133 (192)
..+...+|+.|||..++.+.|..+|.+|..-..++++... .+.|||+|.+...|..|...+++..|- ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4566789999999999999999999999999999988765 689999999999999999999999876 7888887
Q ss_pred ecc
Q psy15152 134 WCF 136 (192)
Q Consensus 134 ~a~ 136 (192)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 764
No 93
>KOG0147|consensus
Probab=98.35 E-value=1.8e-07 Score=79.11 Aligned_cols=81 Identities=26% Similarity=0.365 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
+..++|+..|+...++.+|.++|+.+|.|.+|+++.|+.++.++|.|||+|.+.++...|| .|.|..+.|.+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 3478999999999999999999999999999999999999999999999999999999999 589999999999998765
Q ss_pred cC
Q psy15152 137 VK 138 (192)
Q Consensus 137 ~~ 138 (192)
..
T Consensus 257 ae 258 (549)
T KOG0147|consen 257 AE 258 (549)
T ss_pred HH
Confidence 43
No 94
>KOG0105|consensus
Probab=98.35 E-value=5.4e-06 Score=61.46 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=58.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL 126 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~ 126 (192)
.......|.|.+||.+-++++|+++..+-|.|....+.+| |++.|+|...|+.+-|+..|....+.
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3345678999999999999999999999999999888777 48999999999999999999887654
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.32 E-value=3.4e-06 Score=54.59 Aligned_cols=68 Identities=15% Similarity=0.382 Sum_probs=47.3
Q ss_pred cEEEEcCCCCCCcHHH----HHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 59 WILFVTGVHEEAQEDD----MHEKFSEYG-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~----L~~~F~~~G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
..|||.|||.+.+... |++++..+| .|..+. .+-|+|.|.+.+.|.+|.+.|+|..+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988765 556666665 566652 3579999999999999999999999999999999
Q ss_pred ecc
Q psy15152 134 WCF 136 (192)
Q Consensus 134 ~a~ 136 (192)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 96
>KOG4210|consensus
Probab=98.30 E-value=4.3e-07 Score=72.94 Aligned_cols=83 Identities=23% Similarity=0.328 Sum_probs=75.5
Q ss_pred CcEEE-EcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 58 GWILF-VTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 58 ~~~l~-V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
..++| |++|++.+++++|+.+|..+|.|..++++.++.+|..+|||||.|.+...+..++.. +...+.++++.+.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34566 999999999999999999999999999999999999999999999999999999987 8888999999999887
Q ss_pred cCCCC
Q psy15152 137 VKGPK 141 (192)
Q Consensus 137 ~~~~~ 141 (192)
+.+..
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 76543
No 97
>KOG1995|consensus
Probab=98.30 E-value=7.8e-07 Score=71.85 Aligned_cols=86 Identities=28% Similarity=0.375 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIK--------NLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL 126 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~ 126 (192)
.....+|||.+||..+++++|.++|.++|.|. .|.+-+|+.|+..||-|.|.|.+...|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44457899999999999999999999999874 3667788889999999999999999999999999999999
Q ss_pred CeEEEEEecccCCC
Q psy15152 127 GQTVTVDWCFVKGP 140 (192)
Q Consensus 127 g~~l~v~~a~~~~~ 140 (192)
|..|+|.+|..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999998876653
No 98
>KOG0128|consensus
Probab=98.23 E-value=3.6e-07 Score=80.79 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=87.3
Q ss_pred ccCcCCCCCCccCCCCChh--HHHhhhcccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEee
Q psy15152 15 EKARKKKGRGFGTETSTRN--EIREYESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNL 92 (192)
Q Consensus 15 d~~~~~k~rG~gfv~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~ 92 (192)
-..+++ -||+++++|..+ +.++..-....- -....++|.|+|+..|.++|+.+++.+|.+.+++++.
T Consensus 702 h~n~~~-~rG~~Y~~F~~~~~~~aaV~f~d~~~----------~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt 770 (881)
T KOG0128|consen 702 HKNEKR-FRGKAYVEFLKPEHAGAAVAFRDSCF----------FGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT 770 (881)
T ss_pred Hhhccc-cccceeeEeecCCchhhhhhhhhhhh----------hhhhhhheeCCCCCCchHHHHhhccccCCccccchhh
Confidence 455675 899999999322 222221111110 0145699999999999999999999999999999888
Q ss_pred cCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCC
Q psy15152 93 DRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKG 139 (192)
Q Consensus 93 ~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~ 139 (192)
.+ .|+++|.|||.|.+..++.+++...+...+.-..+.|..+.|..
T Consensus 771 ~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 771 VR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred hh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcc
Confidence 86 89999999999999999999998888888877777787766633
No 99
>KOG4849|consensus
Probab=98.18 E-value=1.5e-06 Score=70.07 Aligned_cols=75 Identities=24% Similarity=0.349 Sum_probs=66.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYG--EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
...+|||||-|++|++||.+.+...| .+.++++..++.+|+++|||+|...+..+.++.++.|....|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 35799999999999999999888766 5678889999999999999999999999999999999999998875444
No 100
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.16 E-value=5.8e-06 Score=56.69 Aligned_cols=70 Identities=27% Similarity=0.489 Sum_probs=43.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC-----eeCCeEEEE
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGT-----TILGQTVTV 132 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~-----~~~g~~l~v 132 (192)
++.|++.+++..++.++|++.|+.||.|..|.+.... ..|||.|.+.++|+.|++.+... .+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3578999999999999999999999999988875442 37999999999999999977544 455555544
Q ss_pred E
Q psy15152 133 D 133 (192)
Q Consensus 133 ~ 133 (192)
.
T Consensus 75 ~ 75 (105)
T PF08777_consen 75 E 75 (105)
T ss_dssp E
T ss_pred E
Confidence 3
No 101
>KOG1457|consensus
Probab=98.15 E-value=2.3e-06 Score=65.09 Aligned_cols=64 Identities=22% Similarity=0.449 Sum_probs=53.4
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL 126 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~ 126 (192)
.+|||.||...++|++|+.+|+.|-....++|. .+ .|. ..||++|++.+.|..|+..|+|..|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~-~g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIR-AR-GGM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cC-CCc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 589999999999999999999999776666553 21 333 48999999999999999999997753
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.98 E-value=2e-05 Score=63.50 Aligned_cols=82 Identities=18% Similarity=0.413 Sum_probs=63.1
Q ss_pred CCCcEEEEcCCCCCCcHHH----H--HHhhccCCCeeEEEEeecCCCCC-cce--EEEEEecCHHHHHHHHHHhCCCeeC
Q psy15152 56 VEGWILFVTGVHEEAQEDD----M--HEKFSEYGEIKNLHLNLDRRTGF-LKG--YALVEYDSYKEASAARDALNGTTIL 126 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~----L--~~~F~~~G~i~~~~i~~~~~tg~-~~g--~afV~f~~~~~a~~al~~l~~~~~~ 126 (192)
....-+||-+||+.+..++ | .++|.+||.|..|.+.+...+-. ..+ -.||+|.+.++|.+||...+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 4456799999999876665 3 48999999999887754421111 112 2399999999999999999999999
Q ss_pred CeEEEEEeccc
Q psy15152 127 GQTVTVDWCFV 137 (192)
Q Consensus 127 g~~l~v~~a~~ 137 (192)
|+.|+..|...
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999988753
No 103
>KOG2314|consensus
Probab=97.93 E-value=2.8e-05 Score=66.35 Aligned_cols=77 Identities=29% Similarity=0.393 Sum_probs=63.0
Q ss_pred CcEEEEcCCCCCCcH------HHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC-CeEE
Q psy15152 58 GWILFVTGVHEEAQE------DDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL-GQTV 130 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~------~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~-g~~l 130 (192)
...|+|.|+|.--.. .-|..+|+++|++....++.+..+ ..+||.|++|.+..+|+.|++.|||..|+ ++.+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 456999999874222 235688999999999999988754 48999999999999999999999999975 6777
Q ss_pred EEEec
Q psy15152 131 TVDWC 135 (192)
Q Consensus 131 ~v~~a 135 (192)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 77543
No 104
>KOG1365|consensus
Probab=97.79 E-value=3.8e-05 Score=62.84 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=58.3
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccC----CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEY----GEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~----G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
-.|-.++||+++++.++.+||.+- |....+-++..+ .|+..|-|||.|..+++|+.|+.+ |...|+-|.|.+-.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 346668999999999999999742 344556555554 799999999999999999999986 77777777766643
No 105
>KOG4307|consensus
Probab=97.79 E-value=0.00011 Score=64.38 Aligned_cols=75 Identities=21% Similarity=0.342 Sum_probs=65.7
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCee-EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIK-NLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~-~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
+.|-+.|+|++++-+||.+||..|-.+- +|.+-++ +.|+..|-|.|.|++.++|.+|...|++..|..+.+.+..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3788899999999999999999997654 4455444 6899999999999999999999999999999999998864
No 106
>KOG0112|consensus
Probab=97.77 E-value=0.00013 Score=65.34 Aligned_cols=83 Identities=23% Similarity=0.367 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC--eEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG--QTVT 131 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g--~~l~ 131 (192)
.....+.+|+++|..++....|...|..||.|..|.+- .|. -||+|.|.+...|+.|++.|-|..|+| ++|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hgq--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HGQ--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cCC--cceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 56677889999999999999999999999999887652 333 399999999999999999999999986 7899
Q ss_pred EEecccCCCCC
Q psy15152 132 VDWCFVKGPKK 142 (192)
Q Consensus 132 v~~a~~~~~~~ 142 (192)
|.++.+.....
T Consensus 525 vdla~~~~~~P 535 (975)
T KOG0112|consen 525 VDLASPPGATP 535 (975)
T ss_pred cccccCCCCCh
Confidence 99998765443
No 107
>KOG1190|consensus
Probab=97.74 E-value=8.5e-05 Score=61.26 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=64.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCe-EEEEEe
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQ-TVTVDW 134 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~-~l~v~~ 134 (192)
+++.+++..|+|.+++|++|++.|..-|........ -++.+-+|++.+.+.|+|-.|+-.++++.+++. .|+|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 567789999999999999999999998766444322 233456999999999999999999999998865 899999
Q ss_pred ccc
Q psy15152 135 CFV 137 (192)
Q Consensus 135 a~~ 137 (192)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 864
No 108
>KOG3152|consensus
Probab=97.69 E-value=3.5e-05 Score=59.81 Aligned_cols=73 Identities=22% Similarity=0.293 Sum_probs=61.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCC--------CCcce----EEEEEecCHHHHHHHHHHhCCCe
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRT--------GFLKG----YALVEYDSYKEASAARDALNGTT 124 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t--------g~~~g----~afV~f~~~~~a~~al~~l~~~~ 124 (192)
..-.||++++|+.++..-|+++|+.||.|-+|.+.....+ |.+.+ -|.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4467999999999999999999999999999888665433 33332 46799999999999999999999
Q ss_pred eCCeE
Q psy15152 125 ILGQT 129 (192)
Q Consensus 125 ~~g~~ 129 (192)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 109
>KOG1365|consensus
Probab=97.69 E-value=6.1e-05 Score=61.69 Aligned_cols=78 Identities=19% Similarity=0.278 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCC-ee--EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGE-IK--NLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~--~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..+|-+++||+..+.++|..||..|-. |. .+.+..+. .|+..|-|||+|.+.++|.+|....+++..+.+.|.|-.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 567999999999999999999998864 33 37778774 799999999999999999999999888888899999976
Q ss_pred cc
Q psy15152 135 CF 136 (192)
Q Consensus 135 a~ 136 (192)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 64
No 110
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.66 E-value=0.00023 Score=48.25 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=50.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEE-EeecC------CCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCe-E
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLH-LNLDR------RTGFLKGYALVEYDSYKEASAARDALNGTTILGQ-T 129 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~-i~~~~------~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~-~ 129 (192)
.+-|.|-+.|+. ....+.+.|++||.|.+.. +..+. .......+-.|.|+++.+|++||.. ||..+.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 344778899998 4466778899999997764 11100 0011245899999999999999985 99999886 5
Q ss_pred EEEEeccc
Q psy15152 130 VTVDWCFV 137 (192)
Q Consensus 130 l~v~~a~~ 137 (192)
+-|.+..+
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55777643
No 111
>KOG0129|consensus
Probab=97.65 E-value=0.00017 Score=61.03 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=61.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFS-EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~ 119 (192)
+.-.+..|||||+||.-++.++|..+|. .||.|..+.|-.|++-+.++|-|=|.|.+..+-.+||.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3445678999999999999999999999 599999999999988899999999999999999999985
No 112
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.61 E-value=0.00016 Score=43.22 Aligned_cols=52 Identities=25% Similarity=0.433 Sum_probs=41.2
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAAR 117 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al 117 (192)
+.|-|.+.+.+..+ .+..+|..||+|..+.+... .-+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 35778888887654 45568889999999887522 348999999999999985
No 113
>KOG1456|consensus
Probab=97.60 E-value=0.00055 Score=56.07 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=65.8
Q ss_pred CCCCCCCCcEEEEc--CCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC-
Q psy15152 51 GPQRSVEGWILFVT--GVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG- 127 (192)
Q Consensus 51 ~~~~~~~~~~l~V~--nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g- 127 (192)
+.....+.+.|.+. |--+.+|-+-|..+..+.|+|.+|.|... +|. .|.|+|++.+.|++|...|||..|..
T Consensus 113 g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsG 187 (494)
T KOG1456|consen 113 GDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSG 187 (494)
T ss_pred CCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhccccccccc
Confidence 33334445555555 44446888999999999999999988765 443 69999999999999999999999763
Q ss_pred -eEEEEEecccCC
Q psy15152 128 -QTVTVDWCFVKG 139 (192)
Q Consensus 128 -~~l~v~~a~~~~ 139 (192)
-.|+|+||+|.+
T Consensus 188 CCTLKIeyAkP~r 200 (494)
T KOG1456|consen 188 CCTLKIEYAKPTR 200 (494)
T ss_pred ceeEEEEecCcce
Confidence 489999998764
No 114
>KOG0120|consensus
Probab=97.51 E-value=0.00037 Score=59.67 Aligned_cols=64 Identities=16% Similarity=0.307 Sum_probs=52.8
Q ss_pred HHHHhhccCCCeeEEEEeec-C--CCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 74 DMHEKFSEYGEIKNLHLNLD-R--RTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 74 ~L~~~F~~~G~i~~~~i~~~-~--~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
+++.-+++||.|..|.++++ . .-.-..|--||+|.+.+++++|.++|+|..+.|+.+...|...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 34556778999999999877 2 1233457789999999999999999999999999999988754
No 115
>KOG2416|consensus
Probab=97.41 E-value=0.00021 Score=61.55 Aligned_cols=84 Identities=21% Similarity=0.360 Sum_probs=68.9
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhcc-CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCee--
Q psy15152 49 EPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSE-YGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTI-- 125 (192)
Q Consensus 49 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~-- 125 (192)
.+.|.+...++.|||.||-.-.|..+|++++.. .|.|... ++|+ -+..|||.|.+.++|-+...+|||..+
T Consensus 435 vpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 435 VPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCC
Confidence 455667788899999999999999999999995 5566665 3343 256899999999999999999999985
Q ss_pred -CCeEEEEEecccC
Q psy15152 126 -LGQTVTVDWCFVK 138 (192)
Q Consensus 126 -~g~~l~v~~a~~~ 138 (192)
.++.|.+.|....
T Consensus 509 sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 509 SNPKHLIADFVRAD 522 (718)
T ss_pred CCCceeEeeecchh
Confidence 5788999988643
No 116
>KOG1855|consensus
Probab=97.41 E-value=0.00021 Score=59.35 Aligned_cols=70 Identities=24% Similarity=0.397 Sum_probs=57.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeec---CCC--CCc--------ceEEEEEecCHHHHHHHHHHhC
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLD---RRT--GFL--------KGYALVEYDSYKEASAARDALN 121 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~---~~t--g~~--------~g~afV~f~~~~~a~~al~~l~ 121 (192)
..++.+|.+-|||.+-.-+.|.++|+.+|.|..|+|... +.+ |.. +-+|+|+|+..+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 356899999999999888999999999999999998665 222 222 4579999999999999999875
Q ss_pred CCe
Q psy15152 122 GTT 124 (192)
Q Consensus 122 ~~~ 124 (192)
...
T Consensus 308 ~e~ 310 (484)
T KOG1855|consen 308 PEQ 310 (484)
T ss_pred hhh
Confidence 543
No 117
>KOG4307|consensus
Probab=97.29 E-value=0.00031 Score=61.58 Aligned_cols=79 Identities=16% Similarity=0.074 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKN-LHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+..|||..||..+++.++.++|..--.|++ |.|.+.+ +++.++.|||.|..++++..|...-+.+.++.+.|+|+-.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 3578999999999999999999998777776 6776665 8888999999999999988888766777788889999754
Q ss_pred c
Q psy15152 136 F 136 (192)
Q Consensus 136 ~ 136 (192)
.
T Consensus 512 ~ 512 (944)
T KOG4307|consen 512 A 512 (944)
T ss_pred h
Confidence 3
No 118
>KOG0129|consensus
Probab=97.26 E-value=0.00079 Score=57.16 Aligned_cols=64 Identities=16% Similarity=0.334 Sum_probs=49.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCC---CCCcce---EEEEEecCHHHHHHHHHHhCC
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRR---TGFLKG---YALVEYDSYKEASAARDALNG 122 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~---tg~~~g---~afV~f~~~~~a~~al~~l~~ 122 (192)
+++||||+||++++|+.|...|..||.+ .+.++.... ---++| |+|+.|+++.+.+..+.+...
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 5789999999999999999999999987 344542111 112456 999999999988887776543
No 119
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.20 E-value=0.0034 Score=45.21 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=52.3
Q ss_pred CCCCcEEEEcCCC------CCCcH---HHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCee
Q psy15152 55 SVEGWILFVTGVH------EEAQE---DDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTI 125 (192)
Q Consensus 55 ~~~~~~l~V~nLp------~~~t~---~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~ 125 (192)
.++..||.|.=+. ....+ .+|.+.|..||.+.=+++.-+ .-+|+|.+-++|.+|+. |+|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 3445567776554 12222 367788999999988877654 47899999999999997 799999
Q ss_pred CCeEEEEEecccCCCC
Q psy15152 126 LGQTVTVDWCFVKGPK 141 (192)
Q Consensus 126 ~g~~l~v~~a~~~~~~ 141 (192)
.|+.|+|+...+....
T Consensus 95 ~g~~l~i~LKtpdW~~ 110 (146)
T PF08952_consen 95 NGRTLKIRLKTPDWLK 110 (146)
T ss_dssp TTEEEEEEE-------
T ss_pred CCEEEEEEeCCccHHH
Confidence 9999999988776543
No 120
>KOG2193|consensus
Probab=97.20 E-value=0.00037 Score=57.87 Aligned_cols=76 Identities=18% Similarity=0.276 Sum_probs=59.9
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCe-eCCeEEEEEeccc
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTT-ILGQTVTVDWCFV 137 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~-~~g~~l~v~~a~~ 137 (192)
..+|++||.+.++..+|+.+|..----..-.++. ..||+||.+.+...|.+|++.++|.. +.|+++.|.++-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3599999999999999999987541111112222 24799999999999999999999985 8999999998877
Q ss_pred CCC
Q psy15152 138 KGP 140 (192)
Q Consensus 138 ~~~ 140 (192)
+..
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 643
No 121
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.16 E-value=0.0034 Score=40.74 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=43.7
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNG 122 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~ 122 (192)
+..||. .|..+...||.++|++||.| .|.++.|. -|||...+.+.|..++..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 556775 99999999999999999998 66777773 699999999999999988764
No 122
>KOG1548|consensus
Probab=97.15 E-value=0.0019 Score=52.41 Aligned_cols=82 Identities=17% Similarity=0.362 Sum_probs=62.4
Q ss_pred CCCCCCCcEEEEcCCCC----CCc-------HHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q psy15152 52 PQRSVEGWILFVTGVHE----EAQ-------EDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~----~~t-------~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l 120 (192)
+.+....++|.+.|+=- ..+ .++|.+-..+||.|.+|.|- ++ -+.|.+-|.|.+.++|..|++.|
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~---hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DR---HPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-cc---CCCceeEEEeCChHHHHHHHHHh
Confidence 34444567888888732 223 24566667889999998663 22 24689999999999999999999
Q ss_pred CCCeeCCeEEEEEeccc
Q psy15152 121 NGTTILGQTVTVDWCFV 137 (192)
Q Consensus 121 ~~~~~~g~~l~v~~a~~ 137 (192)
+|..++||.|.-.....
T Consensus 335 ~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 335 DGRWFDGRQLTASIWDG 351 (382)
T ss_pred cCeeecceEEEEEEeCC
Confidence 99999999999876543
No 123
>KOG0149|consensus
Probab=96.98 E-value=0.00048 Score=53.00 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=24.1
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCC-ChhHH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETS-TRNEI 35 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f-~~~~~ 35 (192)
.|...+++.|+.|+| |||||||+| +.++.
T Consensus 38 eI~eavvitd~~t~r-skGyGfVTf~d~~aa 67 (247)
T KOG0149|consen 38 EIVEAVVITDKNTGR-SKGYGFVTFRDAEAA 67 (247)
T ss_pred ceEEEEEEeccCCcc-ccceeeEEeecHHHH
Confidence 356889999999997 999999999 54443
No 124
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.94 E-value=0.0052 Score=37.75 Aligned_cols=54 Identities=28% Similarity=0.277 Sum_probs=44.4
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccC---CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEY---GEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l 120 (192)
..|+|.|+.. ++.++++.+|..| .....+.|+-|. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4699999966 6778899999988 235588998884 5889999999999999864
No 125
>KOG0128|consensus
Probab=96.78 E-value=6.9e-05 Score=66.76 Aligned_cols=69 Identities=23% Similarity=0.319 Sum_probs=59.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL 126 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~ 126 (192)
..++||+||+..+.+++|...|..+|.+..+++.-...+++.+|+||++|...+.+.+|+....+..++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 367999999999999999999999999887776655568999999999999999999999865555544
No 126
>KOG2202|consensus
Probab=96.72 E-value=0.00071 Score=52.72 Aligned_cols=63 Identities=27% Similarity=0.406 Sum_probs=49.7
Q ss_pred HHHHhhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 74 DMHEKFS-EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 74 ~L~~~F~-~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
+|...|+ +||+|..+.+-.+. .---.|=+||.|...++|++|++.||+..+.|++|...+..-
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 4444444 79999988665443 223467899999999999999999999999999999987743
No 127
>KOG0115|consensus
Probab=96.60 E-value=0.0029 Score=49.40 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=62.9
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC----eeCCeEEEEEe
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGT----TILGQTVTVDW 134 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~----~~~g~~l~v~~ 134 (192)
..|||.||...++.+.|.+.|+.||.|....+..| ..++..+-++|.|...-.|.+|+..+... ...+++.-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 67999999999999999999999999987666666 36888999999999999999999887332 24456666654
Q ss_pred cc
Q psy15152 135 CF 136 (192)
Q Consensus 135 a~ 136 (192)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 44
No 128
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=96.55 E-value=0.0067 Score=47.13 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=68.3
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcccCC---C-----CC----CCC-------------------CCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE--IREYESMETD---V-----GD----EEP-------------------GPQ 53 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~~~---~-----~~----~~~-------------------~~~ 53 (192)
+..+.+..|+.++. +||||||+|.... ..+...++.. + .. ..+ ...
T Consensus 142 ~~~~~~~~d~~~~~-~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (306)
T COG0724 142 VKRVRLVRDRETGK-SRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKAL 220 (306)
T ss_pred eeEEEeeeccccCc-cCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhccccccccc
Confidence 35788899999995 9999999993333 3333333211 1 00 000 011
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAAR 117 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al 117 (192)
.......+++++++..++..++...|..+|.+....+...........+.++.+.....+....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 2234578999999999999999999999999977766655433334444444444444433333
No 129
>KOG2068|consensus
Probab=96.33 E-value=0.0016 Score=52.65 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=60.9
Q ss_pred CcEEEEcCCCCCCcHHHH-H--HhhccCCCeeEEEEeecCC----CCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy15152 58 GWILFVTGVHEEAQEDDM-H--EKFSEYGEIKNLHLNLDRR----TGFLKGYALVEYDSYKEASAARDALNGTTILGQTV 130 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L-~--~~F~~~G~i~~~~i~~~~~----tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l 130 (192)
..-+||-+|+.....+.+ + +.|.+||.|..+.+..++. .+.. .-++|+|...++|..||...+|..++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 456889899988665544 3 6799999999998877651 1222 238999999999999999999999999887
Q ss_pred EEEeccc
Q psy15152 131 TVDWCFV 137 (192)
Q Consensus 131 ~v~~a~~ 137 (192)
+..+..+
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 7666543
No 130
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.25 E-value=0.012 Score=44.18 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=52.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhcc-CCCe---eEEEEeecCC-C-CCcceEEEEEecCHHHHHHHHHHhCCCeeCC---
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSE-YGEI---KNLHLNLDRR-T-GFLKGYALVEYDSYKEASAARDALNGTTILG--- 127 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i---~~~~i~~~~~-t-g~~~g~afV~f~~~~~a~~al~~l~~~~~~g--- 127 (192)
...+|.|++||+.+|++++.+.+++ ++.- ..+.-..... . -..-.-|||.|.+.+++......++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4568999999999999999998887 6655 2333112211 1 1123569999999999999999999987632
Q ss_pred --eEEEEEecccC
Q psy15152 128 --QTVTVDWCFVK 138 (192)
Q Consensus 128 --~~l~v~~a~~~ 138 (192)
.+..|++|--.
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 35677777653
No 131
>KOG4208|consensus
Probab=96.22 E-value=0.0024 Score=48.27 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=40.4
Q ss_pred eeeEEeeccCcCCCCCCccCCCCChhHHHhhhcccCCCCCCCCCCCCCCCCcEEEEcCCCCC-CcHHHHHHh
Q psy15152 8 KGIARLKEKARKKKGRGFGTETSTRNEIREYESMETDVGDEEPGPQRSVEGWILFVTGVHEE-AQEDDMHEK 78 (192)
Q Consensus 8 ~~v~~~~d~~~~~k~rG~gfv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~ 78 (192)
..+++.+.+.||. |+|||||+|+.++.+.+.+-.+++. .-- ++.|.+.-+|+. .-+..+...
T Consensus 78 ~r~rlsRnkrTGN-SKgYAFVEFEs~eVA~IaAETMNNY-Ll~-------e~lL~c~vmppe~~v~~~~~k~ 140 (214)
T KOG4208|consen 78 TRFRLSRNKRTGN-SKGYAFVEFESEEVAKIAAETMNNY-LLM-------EHLLECHVMPPEQKVEKNLKKV 140 (214)
T ss_pred EEEEeecccccCC-cCceEEEEeccHHHHHHHHHHhhhh-hhh-------hheeeeEEeCchhhhhhhhhhh
Confidence 3566779999995 9999999998888877766555541 111 134666667776 333333333
No 132
>KOG0122|consensus
Probab=96.17 E-value=0.0029 Score=49.10 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=29.6
Q ss_pred eeeeEEeeccCcCCCCCCccCCCC--ChhHHHhhhcccCCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETS--TRNEIREYESMETDV 45 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f--~~~~~~~~~~~~~~~ 45 (192)
+..|.+.+|+.|+. +|||+||+| ..++..++..+++.+
T Consensus 216 i~rvylardK~TG~-~kGFAFVtF~sRddA~rAI~~LnG~g 255 (270)
T KOG0122|consen 216 ITRVYLARDKETGL-SKGFAFVTFESRDDAARAIADLNGYG 255 (270)
T ss_pred cceeEEEEccccCc-ccceEEEEEecHHHHHHHHHHccCcc
Confidence 45688999999996 999999999 455566666666655
No 133
>KOG0111|consensus
Probab=96.17 E-value=0.0015 Score=49.90 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=27.9
Q ss_pred eeeeEEeeccCcCCCCCCccCCCC--ChhHHHhhhccc
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETS--TRNEIREYESME 42 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f--~~~~~~~~~~~~ 42 (192)
+.+|+++.|-.++ |+||||||+| .+++.++++.++
T Consensus 37 I~dIqiPlDyesq-kHRgFgFVefe~aEDAaaAiDNMn 73 (298)
T KOG0111|consen 37 IKDIQIPLDYESQ-KHRGFGFVEFEEAEDAAAAIDNMN 73 (298)
T ss_pred hhhcccccchhcc-cccceeEEEeeccchhHHHhhcCc
Confidence 5689999999999 5999999999 555566666553
No 134
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.03 E-value=0.036 Score=39.74 Aligned_cols=74 Identities=19% Similarity=0.314 Sum_probs=55.5
Q ss_pred CCCCcEEEEcCCCCCCcH-H---HHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy15152 55 SVEGWILFVTGVHEEAQE-D---DMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTV 130 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~-~---~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l 130 (192)
.++-.+|.|+=|..++.. + .+...++.||+|.++.+ .| +.-|.|.|.+..+|-.|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-----cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-----CG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-----cC--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 455678888766665443 3 45566788999999865 33 34799999999999999999766 6677888
Q ss_pred EEEecc
Q psy15152 131 TVDWCF 136 (192)
Q Consensus 131 ~v~~a~ 136 (192)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888754
No 135
>KOG2193|consensus
Probab=95.88 E-value=0.0014 Score=54.63 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=76.7
Q ss_pred CccCCCCChhHH--HhhhcccCC----CCCC--CCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEE-eecC
Q psy15152 24 GFGTETSTRNEI--REYESMETD----VGDE--EPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHL-NLDR 94 (192)
Q Consensus 24 G~gfv~f~~~~~--~~~~~~~~~----~~~~--~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i-~~~~ 94 (192)
||+||....... .+.+.++.. |... ....+....++++-+.|+|+...++.|..++..||.+..+.. ..+.
T Consensus 38 gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~ 117 (584)
T KOG2193|consen 38 GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS 117 (584)
T ss_pred ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch
Confidence 899998843333 223333222 2111 111223334567999999999999999999999999988754 4443
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 95 RTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 95 ~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
.+ -.--|+|.+.+.+..|+..|+|..+....++|.|-.
T Consensus 118 et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 118 ET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 32 123468899999999999999999999999998864
No 136
>KOG1996|consensus
Probab=95.85 E-value=0.033 Score=44.50 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=50.3
Q ss_pred HHHHHhhccCCCeeEEEEeecCCCCCcc-eEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 73 DDMHEKFSEYGEIKNLHLNLDRRTGFLK-GYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 73 ~~L~~~F~~~G~i~~~~i~~~~~tg~~~-g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
+++++-..+||.|..|.|...+..-... ---||+|...++|.+|+--|||..++|+.+..-|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4566778899999999887775322222 246999999999999999999999999998776543
No 137
>KOG4676|consensus
Probab=95.85 E-value=0.045 Score=45.42 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=60.4
Q ss_pred EEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCC---CCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRT---GFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 60 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t---g~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.|.|.||.++++.+++..+|.-.|.|..+.|...... ....-.|||.|.+...+..|.. |.++++-++.|.|..+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 6999999999999999999999999999988654321 2234589999999999888875 7788877777666543
No 138
>KOG2135|consensus
Probab=95.81 E-value=0.0052 Score=51.85 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=61.7
Q ss_pred CCcEEEEcCCCCCC-cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 57 EGWILFVTGVHEEA-QEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 57 ~~~~l~V~nLp~~~-t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
+.+.|-+.-.|+.. +-++|..+|.+||.|..|.+-+.. --|.|+|.+..+|-.|.. .++..|+++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 34556666667764 458999999999999999875552 369999999999977776 4899999999999999
Q ss_pred ccCCC
Q psy15152 136 FVKGP 140 (192)
Q Consensus 136 ~~~~~ 140 (192)
.+.+.
T Consensus 444 nps~~ 448 (526)
T KOG2135|consen 444 NPSPV 448 (526)
T ss_pred cCCcc
Confidence 87653
No 139
>KOG0113|consensus
Probab=95.70 E-value=0.0064 Score=48.55 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=25.9
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChh--HHHhhhc
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRN--EIREYES 40 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~--~~~~~~~ 40 (192)
|+.|.+++|+.|+ |++||+||+|..+ ...+|..
T Consensus 128 IkrirlV~d~vTg-kskGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 128 IKRIRLVRDKVTG-KSKGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred ceeEEEeeecccC-CccceEEEEeccHHHHHHHHHh
Confidence 6789999999999 6999999999433 3444443
No 140
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.60 E-value=0.036 Score=41.79 Aligned_cols=63 Identities=22% Similarity=0.224 Sum_probs=46.5
Q ss_pred cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC--CCeeCCeEEEEEecccCC
Q psy15152 71 QEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALN--GTTILGQTVTVDWCFVKG 139 (192)
Q Consensus 71 t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~--~~~~~g~~l~v~~a~~~~ 139 (192)
..+.|+++|..|+.+.....+... +-..|.|.+.++|.+|...|+ +..+.|..+++.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 347899999999998888776553 358899999999999999999 999999999999996544
No 141
>KOG4207|consensus
Probab=95.56 E-value=0.0056 Score=46.48 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=27.8
Q ss_pred eeeeEEeeccCcCCCCCCccCCCC--ChhHHHhhhcccC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETS--TRNEIREYESMET 43 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f--~~~~~~~~~~~~~ 43 (192)
+-+|-|.+|+.|+. +|||+||.| ..++..+++++++
T Consensus 40 vgDVyIPrdr~Tr~-sRgFaFVrf~~k~daedA~damDG 77 (256)
T KOG4207|consen 40 VGDVYIPRDRYTRQ-SRGFAFVRFHDKRDAEDALDAMDG 77 (256)
T ss_pred ccceeccccccccc-ccceeEEEeeecchHHHHHHhhcc
Confidence 34899999999996 999999999 4555555555543
No 142
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=95.50 E-value=0.0091 Score=43.26 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=23.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.++.+++|+.+++ +||||||+|...+.
T Consensus 61 I~~v~i~~d~~tg~-~kGfaFV~F~~~e~ 88 (144)
T PLN03134 61 VVDAKVIVDRETGR-SRGFGFVNFNDEGA 88 (144)
T ss_pred eEEEEEEecCCCCC-cceEEEEEECCHHH
Confidence 67899999999995 99999999954443
No 143
>KOG4454|consensus
Probab=95.49 E-value=0.0052 Score=47.05 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=78.0
Q ss_pred eEEeeccCcCCCCCCccCCCCChhHHHhhhcccCCCCCCCCCCCCCCCCcEEEEcC----CCCCCcHHHHHHhhccCCCe
Q psy15152 10 IARLKEKARKKKGRGFGTETSTRNEIREYESMETDVGDEEPGPQRSVEGWILFVTG----VHEEAQEDDMHEKFSEYGEI 85 (192)
Q Consensus 10 v~~~~d~~~~~k~rG~gfv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~L~~~F~~~G~i 85 (192)
|.+..++..+ .+ |+||.|..+....++-.-.++...... ....+++.|+ |...++++.+.+.|+.-|.+
T Consensus 39 v~ip~~~d~~--~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~----e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~ 111 (267)
T KOG4454|consen 39 VGIPSGQDQE--QK-FAYVFFPNENSVQLAGQLENGDDLEED----EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPI 111 (267)
T ss_pred EeCCCCccCC--Cc-eeeeecccccchhhhhhhcccchhccc----hhhcccccCCCcchhhhhcchhhheeeecccCCC
Confidence 4444444444 34 999999555544444333333222222 2234688888 88899999999999999999
Q ss_pred eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy15152 86 KNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT 129 (192)
Q Consensus 86 ~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~ 129 (192)
..+++..+. .|+++.++|+.+.-..+.-.++....+..+--++
T Consensus 112 ~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 112 EGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred CCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCC
Confidence 999999996 5889999999998777777777776665544333
No 144
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.30 E-value=0.1 Score=33.21 Aligned_cols=67 Identities=24% Similarity=0.377 Sum_probs=38.8
Q ss_pred EEEEc-CCCCCCcHHHHHHhhccCCCe-----eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 60 ILFVT-GVHEEAQEDDMHEKFSEYGEI-----KNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 60 ~l~V~-nLp~~~t~~~L~~~F~~~G~i-----~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
++||. +--..++..+|..++..-+.| -.+.+..+ |+||+-.. +.|+.+++.|++..+.|++++|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 35552 223357888888888876544 45665433 89999885 58899999999999999999998
Q ss_pred ec
Q psy15152 134 WC 135 (192)
Q Consensus 134 ~a 135 (192)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 145
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.22 E-value=0.46 Score=32.73 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=47.5
Q ss_pred EEEEcCCCCCCcHHHHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q psy15152 60 ILFVTGVHEEAQEDDMHEKFSEYG-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL 126 (192)
Q Consensus 60 ~l~V~nLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~ 126 (192)
.+.+...|..++.++|..+.+.+- .|..+++++|. ..++-.+++.|.+.++|......+||..+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344444455555566766655553 56788888884 346778999999999999999999999864
No 146
>KOG0226|consensus
Probab=95.00 E-value=0.013 Score=45.92 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=26.5
Q ss_pred eeEEeeccCcCCCCCCccCCCCChhHHHhhhcccCCCC
Q psy15152 9 GIARLKEKARKKKGRGFGTETSTRNEIREYESMETDVG 46 (192)
Q Consensus 9 ~v~~~~d~~~~~k~rG~gfv~f~~~~~~~~~~~~~~~~ 46 (192)
..++++|+.|+ |++|||||+|...+....+-.++++.
T Consensus 219 ~akviRdkRTg-KSkgygfVSf~~pad~~rAmrem~gk 255 (290)
T KOG0226|consen 219 KAKVIRDKRTG-KSKGYGFVSFRDPADYVRAMREMNGK 255 (290)
T ss_pred hcccccccccc-ccccceeeeecCHHHHHHHHHhhccc
Confidence 45688999999 69999999995555444444445543
No 147
>smart00361 RRM_1 RNA recognition motif.
Probab=94.94 E-value=0.016 Score=36.32 Aligned_cols=27 Identities=22% Similarity=0.067 Sum_probs=19.2
Q ss_pred eeeE-EeeccCc--CCCCCCccCCCCChhHH
Q psy15152 8 KGIA-RLKEKAR--KKKGRGFGTETSTRNEI 35 (192)
Q Consensus 8 ~~v~-~~~d~~~--~~k~rG~gfv~f~~~~~ 35 (192)
.+|. +..|+.+ ++ +|||+||+|...+.
T Consensus 20 ~~v~~v~~~~~~~~~~-~rG~~fV~f~~~~d 49 (70)
T smart00361 20 GKINKIYIDNVGYENH-KRGNVYITFERSED 49 (70)
T ss_pred eEEEEEEeCCCCCCCC-CcEEEEEEECCHHH
Confidence 3553 6777776 75 99999999944443
No 148
>KOG0112|consensus
Probab=94.88 E-value=0.0057 Score=55.30 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
...+||+|||+..+++.+|+..|..+|.|.+|.|-.-. -+.-.-||||.|.+...+..|...+.+..|..-.+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 45789999999999999999999999999998876553 23334599999999999999999999988776566665554
No 149
>KOG4660|consensus
Probab=94.81 E-value=0.066 Score=46.21 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=60.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhc-cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC----CeEEEE
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFS-EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL----GQTVTV 132 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~----g~~l~v 132 (192)
.+++.|.|+|...|...|.+.-. ..|.-..+.++.|-.+....|||||.|.+.+++..+.++.||+.+. .+...+
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 35566666666666555544422 2566667778888778888999999999999999999999998743 466777
Q ss_pred EecccCC
Q psy15152 133 DWCFVKG 139 (192)
Q Consensus 133 ~~a~~~~ 139 (192)
.||.-.+
T Consensus 468 tYArIQG 474 (549)
T KOG4660|consen 468 TYARIQG 474 (549)
T ss_pred ehhhhhc
Confidence 7876554
No 150
>KOG4210|consensus
Probab=94.77 E-value=0.046 Score=44.15 Aligned_cols=83 Identities=18% Similarity=0.089 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
...++|++++.+.+.+.+...++..+|......+........++|++++.|...+.+..|+.......+.+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 45789999999999999888899999988777776666688899999999999999999998644456777776666655
Q ss_pred cCC
Q psy15152 137 VKG 139 (192)
Q Consensus 137 ~~~ 139 (192)
...
T Consensus 167 ~~~ 169 (285)
T KOG4210|consen 167 RRG 169 (285)
T ss_pred ccc
Confidence 444
No 151
>KOG0126|consensus
Probab=94.27 E-value=0.023 Score=42.45 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.7
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+++|++++|+.|| ||+||+|.-|+...
T Consensus 61 e~vdinLiRDk~TG-KSKGFaFLcYEDQR 88 (219)
T KOG0126|consen 61 EIVDINLIRDKKTG-KSKGFAFLCYEDQR 88 (219)
T ss_pred ceEEEEEEecCCCC-cccceEEEEecCcc
Confidence 46799999999999 69999999884333
No 152
>KOG2253|consensus
Probab=94.18 E-value=0.036 Score=48.75 Aligned_cols=79 Identities=13% Similarity=0.043 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy15152 48 EEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG 127 (192)
Q Consensus 48 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g 127 (192)
..|..+...+..++||+|+...+..+-+..+...+|.|..+.... |||.+|..+..+.+|+..++...++|
T Consensus 30 ~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~ 100 (668)
T KOG2253|consen 30 IQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDD 100 (668)
T ss_pred CcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCc
Confidence 344455566778999999999999999999999999887654321 99999999999999999999999999
Q ss_pred eEEEEEec
Q psy15152 128 QTVTVDWC 135 (192)
Q Consensus 128 ~~l~v~~a 135 (192)
..+.+..-
T Consensus 101 ~kl~~~~d 108 (668)
T KOG2253|consen 101 QKLIENVD 108 (668)
T ss_pred chhhccch
Confidence 98887653
No 153
>KOG4285|consensus
Probab=93.96 E-value=0.26 Score=39.65 Aligned_cols=68 Identities=25% Similarity=0.267 Sum_probs=50.4
Q ss_pred EEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE-EEEEecc
Q psy15152 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT-VTVDWCF 136 (192)
Q Consensus 61 l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~-l~v~~a~ 136 (192)
|-|-+.|+.-. .-|..+|++||.|.+.... ..-.+-+|.|.++.+|++||.. +|..|+|.. |-|+...
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 55557777533 4567889999999876433 2235899999999999999986 999998764 5555543
No 154
>KOG4574|consensus
Probab=93.20 E-value=0.057 Score=48.90 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=62.9
Q ss_pred EEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCee--CCeEEEEEeccc
Q psy15152 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTI--LGQTVTVDWCFV 137 (192)
Q Consensus 60 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~--~g~~l~v~~a~~ 137 (192)
+.++.|.+-..+...|..+++.||.+.+.+.+++- ..|.|+|.+.+.|-.|+.+|+|..+ -|-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 45566667777888899999999999999888774 4899999999999999999999984 588899999976
Q ss_pred CC
Q psy15152 138 KG 139 (192)
Q Consensus 138 ~~ 139 (192)
-+
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 54
No 155
>KOG0125|consensus
Probab=92.64 E-value=0.074 Score=43.20 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=23.6
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHHHhhhcccCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEIREYESMETD 44 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~~~~~~~~~~ 44 (192)
+.+|.++.+. |.|||||||+|+..+.++.++.++.
T Consensus 123 VldVEIIfNE---RGSKGFGFVTmen~~dadRARa~LH 157 (376)
T KOG0125|consen 123 VLDVEIIFNE---RGSKGFGFVTMENPADADRARAELH 157 (376)
T ss_pred eeeEEEEecc---CCCCccceEEecChhhHHHHHHHhh
Confidence 4577777643 3699999999966665555554444
No 156
>KOG2591|consensus
Probab=91.86 E-value=0.56 Score=40.89 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=53.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhcc--CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC--eeCCeEEEE
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSE--YGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGT--TILGQTVTV 132 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~--~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~--~~~g~~l~v 132 (192)
..+.+.++-+|..+-.|+++.+|+. +-.+.+|.+..+- -=||+|++..+|+.|.+.|... .|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3467888999999999999999986 5577788776653 2489999999999999877543 366665544
No 157
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.43 E-value=2.1 Score=26.60 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=42.7
Q ss_pred CCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 69 EAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 69 ~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
.++-++++..+..|+- .+|..|+ | | =||.|.+..+|+++....+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3577899999999853 2445554 3 2 389999999999999999999988877654
No 158
>KOG0804|consensus
Probab=88.59 E-value=1.7 Score=36.99 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=57.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYG-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL 126 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~ 126 (192)
+..|+|=.+|-.++.-||..|...+- .|.++++++|. . -.+=..+|.|.+.++|....+.+||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~-~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG-M-PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC-C-CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 78899999999999999999988754 57899999974 2 23457889999999999999999999865
No 159
>smart00360 RRM RNA recognition motif.
Probab=87.51 E-value=0.54 Score=27.96 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=21.0
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+..+.+..++.++. ++||+||+|...+
T Consensus 23 v~~~~i~~~~~~~~-~~~~a~v~f~~~~ 49 (71)
T smart00360 23 IESVRLVRDKDTGK-SKGFAFVEFESEE 49 (71)
T ss_pred EeEEEEEeCCCCCC-CCceEEEEeCCHH
Confidence 45778888888784 9999999994433
No 160
>KOG2318|consensus
Probab=86.82 E-value=4.6 Score=35.58 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=62.2
Q ss_pred CCCCCCCcEEEEcCCCCC-CcHHHHHHhhccC----CCeeEEEEeecC----------CCCC------------------
Q psy15152 52 PQRSVEGWILFVTGVHEE-AQEDDMHEKFSEY----GEIKNLHLNLDR----------RTGF------------------ 98 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~i~~~~i~~~~----------~tg~------------------ 98 (192)
+.....+++|-|-|+.|+ +..++|.-+|..| |.|.+|.|-... ..|.
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 455677889999999997 8889999888764 578888763221 1121
Q ss_pred -------------------cceEEEEEecCHHHHHHHHHHhCCCeeCCe--EEEEEec
Q psy15152 99 -------------------LKGYALVEYDSYKEASAARDALNGTTILGQ--TVTVDWC 135 (192)
Q Consensus 99 -------------------~~g~afV~f~~~~~a~~al~~l~~~~~~g~--~l~v~~a 135 (192)
..=||.|+|.+.+.|.+..+.++|..+... .|-++|.
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 123899999999999999999999998754 5555544
No 161
>KOG0108|consensus
Probab=86.18 E-value=0.54 Score=40.22 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=25.8
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCCh--hHHHhhhccc
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTR--NEIREYESME 42 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~--~~~~~~~~~~ 42 (192)
+.++++.-|+.||+ .|||||++|.. ....+...++
T Consensus 45 v~s~~~v~D~~tG~-~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 45 VLSFRLVYDRETGK-PKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceeeecccccCCC-cCceeeEecCchhhHHHHHHhcC
Confidence 45788999999995 99999999943 3344444443
No 162
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=83.63 E-value=0.37 Score=29.28 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=19.6
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+..+.+..+ .++ +++|||||+|...+.
T Consensus 25 i~~~~~~~~-~~~-~~~~~a~V~F~~~~~ 51 (70)
T PF00076_consen 25 IESIKVMRN-SSG-KSKGYAFVEFESEED 51 (70)
T ss_dssp EEEEEEEEE-TTS-SEEEEEEEEESSHHH
T ss_pred ccccccccc-ccc-cccceEEEEEcCHHH
Confidence 356777777 556 499999999954443
No 163
>KOG4483|consensus
Probab=82.67 E-value=3.1 Score=35.01 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=47.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGE-IKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~ 119 (192)
-+.|-|.++|.....+||...|..|+. --+|.|+-|. .||..|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 478889999999989999999999875 4578888774 899999999999999964
No 164
>KOG4676|consensus
Probab=72.43 E-value=0.45 Score=39.71 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=53.0
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT 129 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~ 129 (192)
.+++|++|+..+...++.+.|..+|+|....+. .|-..-+|-++|....+...|+. ++|..+.-+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~qh 217 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQH 217 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhh
Confidence 579999999999999999999999999877763 33344577899999888888987 4777765333
No 165
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=70.86 E-value=2.2 Score=28.68 Aligned_cols=28 Identities=7% Similarity=-0.003 Sum_probs=20.6
Q ss_pred eEEeeccCcCCCCCCccCCCC-ChhHHHhh
Q psy15152 10 IARLKEKARKKKGRGFGTETS-TRNEIREY 38 (192)
Q Consensus 10 v~~~~d~~~~~k~rG~gfv~f-~~~~~~~~ 38 (192)
+=++.|-.++. +.||+||.| +.+....+
T Consensus 33 ~YLPiDf~~~~-N~GYAFVNf~~~~~~~~F 61 (97)
T PF04059_consen 33 FYLPIDFKNKC-NLGYAFVNFTSPQAAIRF 61 (97)
T ss_pred EEeeeeccCCC-ceEEEEEEcCCHHHHHHH
Confidence 44678888886 999999999 44444444
No 166
>PLN03120 nucleic acid binding protein; Provisional
Probab=70.77 E-value=3.4 Score=32.90 Aligned_cols=25 Identities=8% Similarity=-0.000 Sum_probs=18.4
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+++|.+++|+. .+|||||+|..+.
T Consensus 30 ~I~~V~I~~d~~----~~GfAFVtF~d~e 54 (260)
T PLN03120 30 DIEYVEMQSENE----RSQIAYVTFKDPQ 54 (260)
T ss_pred CeEEEEEeecCC----CCCEEEEEeCcHH
Confidence 357888888864 5799999994333
No 167
>KOG4410|consensus
Probab=70.24 E-value=8.8 Score=30.98 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=36.0
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCe-eEEEEeecCCCCCcceEEEEEecCHH
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEI-KNLHLNLDRRTGFLKGYALVEYDSYK 111 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~~~i~~~~~tg~~~g~afV~f~~~~ 111 (192)
+-||++||+.++.-.||+..+.+-|.+ .++.|. .+.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 459999999999999999998887643 355542 23678999997643
No 168
>KOG0130|consensus
Probab=69.10 E-value=3.1 Score=29.81 Aligned_cols=37 Identities=8% Similarity=0.146 Sum_probs=28.8
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCC--ChhHHHhhhcccC
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETS--TRNEIREYESMET 43 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f--~~~~~~~~~~~~~ 43 (192)
.+++|++--|+.|+- .+||+.|+| ..++.++++.++.
T Consensus 98 eiKNihLNLDRRtGy-~KGYaLvEYet~keAq~A~~~~Ng 136 (170)
T KOG0130|consen 98 EIKNIHLNLDRRTGY-VKGYALVEYETLKEAQAAIDALNG 136 (170)
T ss_pred cccceeecccccccc-ccceeeeehHhHHHHHHHHHhccc
Confidence 367899999999997 999999999 4455556666553
No 169
>KOG4019|consensus
Probab=67.73 E-value=4.4 Score=30.38 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=50.5
Q ss_pred EEEEcCCCCCCcH--H---HHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCe-EEEEE
Q psy15152 60 ILFVTGVHEEAQE--D---DMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQ-TVTVD 133 (192)
Q Consensus 60 ~l~V~nLp~~~t~--~---~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~-~l~v~ 133 (192)
.+.+.+++..+-. + ....+|..|.+....++++. .+.--|.|.+++.|..|...+++..+.|+ .+..-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 4666677765332 2 23455665555444444333 34567899999999999999999999988 88888
Q ss_pred ecccCC
Q psy15152 134 WCFVKG 139 (192)
Q Consensus 134 ~a~~~~ 139 (192)
++.+.-
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 887654
No 170
>PLN03121 nucleic acid binding protein; Provisional
Probab=66.69 E-value=4.4 Score=31.90 Aligned_cols=31 Identities=3% Similarity=-0.106 Sum_probs=20.6
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCC-hhHHHhhhc
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETST-RNEIREYES 40 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~-~~~~~~~~~ 40 (192)
.+++|.+++|.. .+|||||+|. .++......
T Consensus 31 ~I~~V~I~~D~e----t~gfAfVtF~d~~aaetAll 62 (243)
T PLN03121 31 AIEHVEIIRSGE----YACTAYVTFKDAYALETAVL 62 (243)
T ss_pred CeEEEEEecCCC----cceEEEEEECCHHHHHHHHh
Confidence 367899999842 5589999994 444433333
No 171
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=65.44 E-value=16 Score=25.40 Aligned_cols=46 Identities=15% Similarity=0.384 Sum_probs=28.3
Q ss_pred CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEec-CHHHHHHHHH
Q psy15152 70 AQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYD-SYKEASAARD 118 (192)
Q Consensus 70 ~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~-~~~~a~~al~ 118 (192)
++.+.|.+.|+.|..+ +++.+.++ ..+.|+++|.|. +...-..|+.
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 3557899999999876 46666775 357899999997 5555555654
No 172
>KOG0107|consensus
Probab=63.66 E-value=6 Score=29.62 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=13.6
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETST 31 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~ 31 (192)
+.+|++-+ .-.||+||+|+
T Consensus 37 lrsvWvAr------nPPGfAFVEFe 55 (195)
T KOG0107|consen 37 LRSVWVAR------NPPGFAFVEFE 55 (195)
T ss_pred ceeEEEee------cCCCceEEecc
Confidence 34566655 47899999993
No 173
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=63.32 E-value=32 Score=22.40 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=40.7
Q ss_pred EEEcCCCCCCcHHHHHHhhcc-CC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q psy15152 61 LFVTGVHEEAQEDDMHEKFSE-YG-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119 (192)
Q Consensus 61 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~ 119 (192)
-|+--++...+..++++.++. || .|.++..+.-+ .+. --|||.+...+.|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~~--KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KGE--KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCc--EEEEEEeCCCCcHHHHHHh
Confidence 455567889999999888876 66 56777665554 332 3599999988888876554
No 174
>PLN03213 repressor of silencing 3; Provisional
Probab=63.20 E-value=5.4 Score=34.64 Aligned_cols=32 Identities=9% Similarity=0.272 Sum_probs=19.8
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCCh----hHHHhhhcccC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTR----NEIREYESMET 43 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~----~~~~~~~~~~~ 43 (192)
..+|.++++ + +||||||+|.. ....++..++.
T Consensus 37 VkdVEIpRE--T---GRGFAFVEMssdddaEeeKAISaLNG 72 (759)
T PLN03213 37 VDAVEFVRT--K---GRSFAYIDFSPSSTNSLTKLFSTYNG 72 (759)
T ss_pred eeEEEEecc--c---CCceEEEEecCCcHHHHHHHHHHhcC
Confidence 456777732 2 48999999932 34555555543
No 175
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=61.29 E-value=16 Score=22.87 Aligned_cols=60 Identities=27% Similarity=0.256 Sum_probs=40.8
Q ss_pred HHHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 73 DDMHEKFSEYG-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 73 ~~L~~~F~~~G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
+++.+-|...| .+..+.-+..+.++.+-..-+|+.....+-.. .|+=..|+|+++.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 35677777777 57788888887777666777887765432222 34555678999888754
No 176
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=60.26 E-value=20 Score=22.27 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=41.7
Q ss_pred HHHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 73 DDMHEKFSEYG-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 73 ~~L~~~F~~~G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
+++.+-|...| .|..+.-+..+.++..--.-||+.....+. .+.++=..+.+..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~---k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNN---KEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccc---cceeehHhhCCeEEEEecCCC
Confidence 35666666666 677777777766677777888888765442 233455668888988886543
No 177
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=58.38 E-value=46 Score=21.28 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=40.3
Q ss_pred EEEcCCCCCCcHHHHHHhhcc-CC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q psy15152 61 LFVTGVHEEAQEDDMHEKFSE-YG-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119 (192)
Q Consensus 61 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~ 119 (192)
-|+-.++...+..++++.++. || .|..+..+.-+ .+. --|||.+...+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~~--KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RGE--KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCc--eEEEEEECCCCcHHHHHHh
Confidence 566678999999999988876 66 56677665554 232 3599999888887776544
No 178
>PRK11901 hypothetical protein; Reviewed
Probab=50.25 E-value=39 Score=27.88 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=39.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEE--EecCHHHHHHHHHHhCCC
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALV--EYDSYKEASAARDALNGT 123 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV--~f~~~~~a~~al~~l~~~ 123 (192)
.++|-+.. ...++.|..|...++ +..+.+..-...|+.. |..| .|.+.++|..|+..|...
T Consensus 245 ~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 245 HYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 35555544 345778888877775 3445444444455543 4433 799999999999988653
No 179
>KOG3424|consensus
Probab=48.94 E-value=41 Score=23.47 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=27.1
Q ss_pred CCcHHHHHHhhcc-CCCeeEE----EEeecCCCCCcceEEEEEecCHHHHHH
Q psy15152 69 EAQEDDMHEKFSE-YGEIKNL----HLNLDRRTGFLKGYALVEYDSYKEASA 115 (192)
Q Consensus 69 ~~t~~~L~~~F~~-~G~i~~~----~i~~~~~tg~~~g~afV~f~~~~~a~~ 115 (192)
.++.++|++-+++ |-.-.+. .+-..-.+|++.|||.| |++.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 3567777776665 3221222 22333357889999987 777766553
No 180
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=48.64 E-value=27 Score=28.42 Aligned_cols=32 Identities=25% Similarity=0.151 Sum_probs=23.3
Q ss_pred EEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 103 ALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 103 afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
|||+|++..+|+.|++.+....- ..+.+..|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCC
Confidence 79999999999999996554432 444665553
No 181
>KOG4209|consensus
Probab=47.83 E-value=19 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=20.8
Q ss_pred eeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 9 GIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 9 ~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.|.+..|+.++. ++||+||+|....
T Consensus 130 ~~ti~~d~~~~~-~k~~~yvef~~~~ 154 (231)
T KOG4209|consen 130 RVTVPKDKFRGH-PKGFAYVEFSSYE 154 (231)
T ss_pred ceeeeccccCCC-cceeEEEecccHh
Confidence 467899999996 9999999994444
No 182
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=47.08 E-value=58 Score=21.94 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=25.3
Q ss_pred CCcHHHHHHhhcc-CCCeeEEEEeec----CCCCCcceEEEEEecCHHHHHH
Q psy15152 69 EAQEDDMHEKFSE-YGEIKNLHLNLD----RRTGFLKGYALVEYDSYKEASA 115 (192)
Q Consensus 69 ~~t~~~L~~~F~~-~G~i~~~~i~~~----~~tg~~~g~afV~f~~~~~a~~ 115 (192)
..+..+|++-+.. |+.=.+..++.. -..|.+.|||.| |++.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 4566777665554 553223322222 235667788876 777766554
No 183
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=45.55 E-value=46 Score=20.39 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=14.6
Q ss_pred HHHHHhhccCCCeeEEEE
Q psy15152 73 DDMHEKFSEYGEIKNLHL 90 (192)
Q Consensus 73 ~~L~~~F~~~G~i~~~~i 90 (192)
++|+++|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999965544
No 184
>KOG2891|consensus
Probab=41.26 E-value=34 Score=27.65 Aligned_cols=66 Identities=29% Similarity=0.610 Sum_probs=40.3
Q ss_pred EEEEcCCCC------------CCcHHHHHHhhccCCCeeEEEEee-cC----CCCCc-----ceEEE---------EEec
Q psy15152 60 ILFVTGVHE------------EAQEDDMHEKFSEYGEIKNLHLNL-DR----RTGFL-----KGYAL---------VEYD 108 (192)
Q Consensus 60 ~l~V~nLp~------------~~t~~~L~~~F~~~G~i~~~~i~~-~~----~tg~~-----~g~af---------V~f~ 108 (192)
+||+.+||- -.+++-|+..|..||.|..+.|+. |+ .+|+. .||+| |.|-
T Consensus 151 ti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfm 230 (445)
T KOG2891|consen 151 TIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFM 230 (445)
T ss_pred ceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHH
Confidence 577777764 245677999999999998877643 22 24544 34443 4444
Q ss_pred CHHHHHHHHHHhCCCee
Q psy15152 109 SYKEASAARDALNGTTI 125 (192)
Q Consensus 109 ~~~~a~~al~~l~~~~~ 125 (192)
..-....|+.+|.|..+
T Consensus 231 eykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 231 EYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHhHHHHHHHHhcchH
Confidence 44444556666666553
No 185
>KOG0415|consensus
Probab=41.08 E-value=19 Score=30.11 Aligned_cols=31 Identities=6% Similarity=0.110 Sum_probs=25.0
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhHHHh
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNEIRE 37 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~~~~ 37 (192)
.+.+..+++|..|+- +--|+||+|+......
T Consensus 265 ~i~sceVIRD~ktgd-sLqyaFiEFen~escE 295 (479)
T KOG0415|consen 265 KIVSCEVIRDRKTGD-SLQYAFIEFENKESCE 295 (479)
T ss_pred cceeeeEEecccccc-hhheeeeeecchhhHH
Confidence 367889999999995 9999999995555433
No 186
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=40.29 E-value=22 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=20.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhh
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKF 79 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F 79 (192)
....++|-|.|||...++++|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 3456789999999999999998654
No 187
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=40.11 E-value=1e+02 Score=25.09 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=57.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCC-------CCCcceEEEEEecCHHHHHHH----HHHhCCC--e
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRR-------TGFLKGYALVEYDSYKEASAA----RDALNGT--T 124 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~-------tg~~~g~afV~f~~~~~a~~a----l~~l~~~--~ 124 (192)
.+.|...|+..+++--.+...|..||+|+.|.++.+.. .-+...-..+.|-+.+.+... ++.|... .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 45588889999888888888899999999999987751 122335678889888887653 3333332 3
Q ss_pred eCCeEEEEEeccc
Q psy15152 125 ILGQTVTVDWCFV 137 (192)
Q Consensus 125 ~~g~~l~v~~a~~ 137 (192)
+....|.+.+..-
T Consensus 95 L~S~~L~lsFV~l 107 (309)
T PF10567_consen 95 LKSESLTLSFVSL 107 (309)
T ss_pred cCCcceeEEEEEE
Confidence 6777888887753
No 188
>KOG4365|consensus
Probab=39.03 E-value=5.5 Score=34.02 Aligned_cols=79 Identities=5% Similarity=-0.152 Sum_probs=58.6
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccC
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVK 138 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~ 138 (192)
.+.|+..+|-..++.++.-+|..||-|.-+.+...-..|...-.+|+.-.. .+++.++..+.-..+.|..+++..+...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 346778889999999999999999988766554443455556678887664 5677777777777788888888777543
No 189
>KOG1295|consensus
Probab=36.08 E-value=55 Score=27.55 Aligned_cols=66 Identities=11% Similarity=0.189 Sum_probs=45.5
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCC-eeEEEEeecCCCC---CcceEEEEEecCHHHHHHHHHHhCCCee
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGE-IKNLHLNLDRRTG---FLKGYALVEYDSYKEASAARDALNGTTI 125 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~~~i~~~~~tg---~~~g~afV~f~~~~~a~~al~~l~~~~~ 125 (192)
..+.|.+||+..++++|.+...++-. +....+.... .+ ...+.|||.|...++.......++|+.+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~-~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKAD-ESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheecccc-ccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 46889999999999999887777532 2222222111 11 1246899999999998888888888764
No 190
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=34.15 E-value=2.2e+02 Score=25.88 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=50.0
Q ss_pred cEEEEc-CCCCCCcHHHHHHhhccCCCee-----EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 59 WILFVT-GVHEEAQEDDMHEKFSEYGEIK-----NLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 59 ~~l~V~-nLp~~~t~~~L~~~F~~~G~i~-----~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
.++||. +=...++..+|..++..-+.|. .|.|.. .|.||+.. .+.|...+..|++..+.|+.|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELP-KGMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcC-hhhHHHHHHHhccccccCCceEE
Confidence 345552 2333578888888877665553 445432 28899987 46688999999999999999999
Q ss_pred Eecc
Q psy15152 133 DWCF 136 (192)
Q Consensus 133 ~~a~ 136 (192)
+.+.
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 9875
No 191
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=33.32 E-value=3.3e+02 Score=24.33 Aligned_cols=38 Identities=29% Similarity=0.288 Sum_probs=30.6
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCC
Q psy15152 99 LKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKG 139 (192)
Q Consensus 99 ~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~ 139 (192)
.+|-|. .|++.++|.+|+. ++..-.|-.|.|+|.-|+.
T Consensus 382 ~~G~A~-VF~see~a~~ai~--~g~i~~gdVvViRyeGPkG 419 (535)
T TIGR00110 382 FEGPAK-VFESEEEALEAIL--GGKIKEGDVVVIRYEGPKG 419 (535)
T ss_pred EEEeEE-EECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCC
Confidence 456675 4999999999996 4777788899999987774
No 192
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=33.31 E-value=76 Score=20.39 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=21.7
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCCe
Q psy15152 99 LKGYALVEYDSYKEASAARDALNGTT 124 (192)
Q Consensus 99 ~~g~afV~f~~~~~a~~al~~l~~~~ 124 (192)
.+||-|||=.+.++...|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 58999999999999999998776644
No 193
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=32.80 E-value=89 Score=26.78 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=30.0
Q ss_pred CCCCCCCCcEEEEcCCCCC-CcHHHHHHhhccC----CCeeEEEE
Q psy15152 51 GPQRSVEGWILFVTGVHEE-AQEDDMHEKFSEY----GEIKNLHL 90 (192)
Q Consensus 51 ~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~i~~~~i 90 (192)
.|....+..+|-|-|+.|+ +...+|...|+.| |.+..|.|
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~i 183 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKI 183 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEe
Confidence 3444566778999999997 7778999888764 56766665
No 194
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=32.72 E-value=70 Score=19.82 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=22.5
Q ss_pred EEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy15152 102 YALVEYDSYKEASAARDALNGTTILGQT 129 (192)
Q Consensus 102 ~afV~f~~~~~a~~al~~l~~~~~~g~~ 129 (192)
+.+|.|.+..+|.+|-+.|....+..+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 6899999999999999888766554443
No 195
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=32.12 E-value=22 Score=30.07 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=47.0
Q ss_pred cEEEEcCCCCCCcH--------HHHHHhhcc--CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q psy15152 59 WILFVTGVHEEAQE--------DDMHEKFSE--YGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARD 118 (192)
Q Consensus 59 ~~l~V~nLp~~~t~--------~~L~~~F~~--~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~ 118 (192)
..+|+.+.....+. +++...|.+ .+.+..+..-++-....++|--|++|...+.+++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45777777665444 489999998 6677788777776567788999999999999999874
No 196
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=32.06 E-value=1.8e+02 Score=20.79 Aligned_cols=46 Identities=20% Similarity=0.360 Sum_probs=25.2
Q ss_pred CCcHHHHHHhhcc-CC-CeeEEEE----eecCCCCCcceEEEEEecCHHHHHH
Q psy15152 69 EAQEDDMHEKFSE-YG-EIKNLHL----NLDRRTGFLKGYALVEYDSYKEASA 115 (192)
Q Consensus 69 ~~t~~~L~~~F~~-~G-~i~~~~i----~~~~~tg~~~g~afV~f~~~~~a~~ 115 (192)
..+..+|++-+.. |+ .=.+..+ -.....|.+.|||.| |++.+.|..
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4566777766654 55 2122222 222235677788876 666665443
No 197
>KOG0156|consensus
Probab=31.80 E-value=81 Score=27.64 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=43.5
Q ss_pred EEcCCCCCCcH---HHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy15152 62 FVTGVHEEAQE---DDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTV 130 (192)
Q Consensus 62 ~V~nLp~~~t~---~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l 130 (192)
+||||+.-... ..+.++=.+||.|-.+++-.- -.|.-.+.+.|+.|+.. ++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 47888775333 445555557999987776322 36788899999999986 8888888885
No 198
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=30.84 E-value=1.5e+02 Score=19.14 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=24.6
Q ss_pred CCcHHHHHHhhcc-CCC----eeEEEEeecCCCCCcceEEEEEecCHHHHHH
Q psy15152 69 EAQEDDMHEKFSE-YGE----IKNLHLNLDRRTGFLKGYALVEYDSYKEASA 115 (192)
Q Consensus 69 ~~t~~~L~~~F~~-~G~----i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~ 115 (192)
..+..+|++-++. |+. |.--.+......+.+.|||.| |++.+.+.+
T Consensus 12 Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 12 TPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp S--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 3455677665554 432 222233444345667788876 777776654
No 199
>KOG4008|consensus
Probab=30.27 E-value=41 Score=26.47 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=28.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNL 88 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~ 88 (192)
......++|+-|+|..++++.|.++.+..|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34456779999999999999999999988855443
No 200
>KOG2295|consensus
Probab=30.14 E-value=7.3 Score=34.25 Aligned_cols=72 Identities=13% Similarity=0.068 Sum_probs=50.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT 129 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~ 129 (192)
.+.+|+.|+++.++-++|..+.+.+--...+.+-.+..-....-++.|.|.---....|+.+||+..+....
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 367999999999999999999988765555544333222233457788898766777777778877655433
No 201
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=28.27 E-value=80 Score=21.30 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=17.1
Q ss_pred eEEEEEecCHHHHHHHHHHh
Q psy15152 101 GYALVEYDSYKEASAARDAL 120 (192)
Q Consensus 101 g~afV~f~~~~~a~~al~~l 120 (192)
-|..++|.+.+...+|...+
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 48899999999999888765
No 202
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=27.12 E-value=3.6e+02 Score=23.70 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHHHhhc----cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy15152 72 EDDMHEKFS----EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALN 121 (192)
Q Consensus 72 ~~~L~~~F~----~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (192)
.-+|..+|. .+|-|+++.+...+. .......++.|.+.++|..++..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 346666665 467788887766653 3345677889999999999988764
No 203
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.09 E-value=42 Score=18.16 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=9.8
Q ss_pred CCCcHHHHHHhhccCC
Q psy15152 68 EEAQEDDMHEKFSEYG 83 (192)
Q Consensus 68 ~~~t~~~L~~~F~~~G 83 (192)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678899999987653
No 204
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=25.79 E-value=2.3e+02 Score=25.18 Aligned_cols=48 Identities=10% Similarity=0.278 Sum_probs=37.3
Q ss_pred CCCcEEEEcCCCCCCcH-HHHHHhhccCCCeeEEEEeecCCCCCcceEEE
Q psy15152 56 VEGWILFVTGVHEEAQE-DDMHEKFSEYGEIKNLHLNLDRRTGFLKGYAL 104 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~-~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~af 104 (192)
...-.+|.|-.|-+.++ ++|++.+.+. .+.+..+...++|...-||||
T Consensus 295 ~~~P~Vf~GlyPid~~dye~LrdAleKL-~LNDasl~~E~EtS~ALGfGf 343 (603)
T COG0481 295 EVKPMVFAGLYPVDSDDYEDLRDALEKL-QLNDASLTYEPETSQALGFGF 343 (603)
T ss_pred cCCceEEEeecccChhHHHHHHHHHHhc-ccccceeeeccccchhccCce
Confidence 33457999999998666 7899988876 566777778888877778776
No 205
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=24.32 E-value=2.6e+02 Score=20.26 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=36.7
Q ss_pred EEEEcCCCCCCcHHHHHHhhcc-CC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHH
Q psy15152 60 ILFVTGVHEEAQEDDMHEKFSE-YG-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAA 116 (192)
Q Consensus 60 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~a 116 (192)
.-|+--++...+..++++.++. |+ .|..|..+.-+ .|.- -|||.+....+|...
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g~K--KA~V~L~~~~~aidv 138 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DGLK--KAYIRLSPDVDALDV 138 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CCce--EEEEEECCCCcHHHH
Confidence 4566678888999999988876 65 46666655544 2332 589999776665443
No 206
>PRK10943 cold shock-like protein CspC; Provisional
Probab=24.29 E-value=29 Score=21.56 Aligned_cols=10 Identities=40% Similarity=0.750 Sum_probs=7.4
Q ss_pred CCCCccCCCC
Q psy15152 21 KGRGFGTETS 30 (192)
Q Consensus 21 k~rG~gfv~f 30 (192)
..||||||+-
T Consensus 13 ~~kGfGFI~~ 22 (69)
T PRK10943 13 ESKGFGFITP 22 (69)
T ss_pred CCCCcEEEec
Confidence 3689999943
No 207
>PRK14998 cold shock-like protein CspD; Provisional
Probab=23.84 E-value=28 Score=21.98 Aligned_cols=9 Identities=33% Similarity=0.696 Sum_probs=7.1
Q ss_pred CCCCccCCC
Q psy15152 21 KGRGFGTET 29 (192)
Q Consensus 21 k~rG~gfv~ 29 (192)
..||||||.
T Consensus 11 ~~kGfGFI~ 19 (73)
T PRK14998 11 NAKGFGFIC 19 (73)
T ss_pred CCCceEEEe
Confidence 368999993
No 208
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=23.16 E-value=29 Score=21.95 Aligned_cols=9 Identities=33% Similarity=0.696 Sum_probs=7.1
Q ss_pred CCCCccCCC
Q psy15152 21 KGRGFGTET 29 (192)
Q Consensus 21 k~rG~gfv~ 29 (192)
..||||||+
T Consensus 11 ~~KGfGFI~ 19 (74)
T PRK09937 11 NAKGFGFIC 19 (74)
T ss_pred CCCCeEEEe
Confidence 368999993
No 209
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=22.94 E-value=31 Score=21.43 Aligned_cols=9 Identities=44% Similarity=0.789 Sum_probs=7.0
Q ss_pred CCCccCCCC
Q psy15152 22 GRGFGTETS 30 (192)
Q Consensus 22 ~rG~gfv~f 30 (192)
.||||||+-
T Consensus 14 ~kGyGFI~~ 22 (69)
T PRK09507 14 SKGFGFITP 22 (69)
T ss_pred CCCcEEEec
Confidence 689999943
No 210
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.62 E-value=2.1e+02 Score=18.55 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=19.5
Q ss_pred CeeEEEEeecCCCCCcceEEEEEecC
Q psy15152 84 EIKNLHLNLDRRTGFLKGYALVEYDS 109 (192)
Q Consensus 84 ~i~~~~i~~~~~tg~~~g~afV~f~~ 109 (192)
+|+++++-.-...|+-++||=|.|++
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36677776555568999999999986
No 211
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=21.43 E-value=2.1e+02 Score=18.74 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=27.1
Q ss_pred EEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEe
Q psy15152 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEY 107 (192)
Q Consensus 60 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f 107 (192)
-+|||+++..+.+.-...+....+.-.-+-+..+. + ..||+|-..
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~-n--eqG~~~~t~ 71 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN-N--EQGFDFRTL 71 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC-C--CCCEEEEEe
Confidence 39999999988766555554433333333232222 2 568988776
No 212
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=20.79 E-value=32 Score=21.39 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=6.6
Q ss_pred CCCccCCC
Q psy15152 22 GRGFGTET 29 (192)
Q Consensus 22 ~rG~gfv~ 29 (192)
.||||||+
T Consensus 15 ~kGfGFI~ 22 (70)
T PRK10354 15 DKGFGFIT 22 (70)
T ss_pred CCCcEEEe
Confidence 58999994
No 213
>PRK10905 cell division protein DamX; Validated
Probab=20.70 E-value=2.2e+02 Score=23.62 Aligned_cols=60 Identities=22% Similarity=0.178 Sum_probs=36.3
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEE--EEEecCHHHHHHHHHHhCCC
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYA--LVEYDSYKEASAARDALNGT 123 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~a--fV~f~~~~~a~~al~~l~~~ 123 (192)
++|-|+.+. +++.|.++-.+.|- ....+......|+.. |- +=.|.+.++|++|+..|-..
T Consensus 248 YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 248 YTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred eEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCCHH
Confidence 555555444 55777777777643 333333333355432 33 33789999999999988643
No 214
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.35 E-value=1.2e+02 Score=24.25 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=25.3
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeec
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLD 93 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~ 93 (192)
....|+|||+.++..-+..++...-.+....++..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 35779999999999999888876544444444443
No 215
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=20.21 E-value=1.8e+02 Score=16.17 Aligned_cols=30 Identities=27% Similarity=0.240 Sum_probs=21.8
Q ss_pred ecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy15152 92 LDRRTGFLKGYALVEYDSYKEASAARDALN 121 (192)
Q Consensus 92 ~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (192)
.++.+|+.+-.----|.+..+|+.++..+.
T Consensus 9 ~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~ 38 (46)
T PF14657_consen 9 YDDETGKRKQKTKRGFKTKKEAEKALAKIE 38 (46)
T ss_pred EECCCCCEEEEEcCCCCcHHHHHHHHHHHH
Confidence 555688776555545899999999887653
Done!