Query psy15152
Match_columns 192
No_of_seqs 258 out of 2051
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 21:56:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kn4_A Immunoglobulin G-bindin 99.9 5.4E-25 1.9E-29 161.1 12.4 130 9-141 2-153 (158)
2 4fxv_A ELAV-like protein 1; RN 99.9 6.6E-25 2.3E-29 148.9 11.9 82 56-137 17-98 (99)
3 2qfj_A FBP-interacting repress 99.9 2.6E-24 9E-29 164.2 14.1 134 7-141 55-208 (216)
4 1l3k_A Heterogeneous nuclear r 99.9 1.9E-24 6.5E-29 162.6 12.9 136 6-143 39-188 (196)
5 4f02_A Polyadenylate-binding p 99.9 5.8E-25 2E-29 168.5 8.5 131 6-139 41-182 (213)
6 2cjk_A Nuclear polyadenylated 99.9 4.5E-25 1.5E-29 162.1 7.6 130 7-138 30-166 (167)
7 3md3_A Nuclear and cytoplasmic 99.9 9.5E-24 3.3E-28 154.4 13.3 128 7-136 27-165 (166)
8 1rk8_A CG8781-PA, CG8781-PA pr 99.9 8.4E-24 2.9E-28 156.1 12.1 135 10-144 23-158 (165)
9 1b7f_A Protein (SXL-lethal pro 99.9 1.2E-23 4.2E-28 154.4 11.5 127 7-135 30-168 (168)
10 3nmr_A Cugbp ELAV-like family 99.9 1.9E-23 6.6E-28 154.2 11.6 129 6-136 29-175 (175)
11 3s8s_A Histone-lysine N-methyl 99.9 4.4E-23 1.5E-27 142.4 12.5 83 56-138 4-86 (110)
12 1p27_B RNA-binding protein 8A; 99.9 4E-23 1.4E-27 141.4 11.9 93 48-140 13-105 (106)
13 2dgo_A Cytotoxic granule-assoc 99.9 2.5E-22 8.5E-27 139.4 15.5 91 52-142 9-99 (115)
14 1fxl_A Paraneoplastic encephal 99.9 2.3E-23 8E-28 152.5 10.5 127 7-135 29-167 (167)
15 2lxi_A RNA-binding protein 10; 99.9 4.9E-24 1.7E-28 142.4 6.3 83 58-140 1-85 (91)
16 2cq0_A Eukaryotic translation 99.9 1.9E-22 6.3E-27 137.4 13.8 88 54-141 11-98 (103)
17 1oo0_B CG8781-PA, drosophila Y 99.9 6E-23 2E-27 141.5 11.4 94 48-141 16-109 (110)
18 2dgs_A DAZ-associated protein 99.9 1.6E-22 5.5E-27 136.8 12.9 88 53-141 5-92 (99)
19 2lkz_A RNA-binding protein 5; 99.9 2.5E-23 8.5E-28 140.0 8.7 83 55-137 6-94 (95)
20 3md1_A Nuclear and cytoplasmic 99.9 1.7E-22 5.8E-27 132.1 12.2 82 58-139 1-82 (83)
21 2do4_A Squamous cell carcinoma 99.9 3.1E-22 1.1E-26 135.6 13.6 89 51-140 10-98 (100)
22 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.3E-22 4.5E-27 133.9 11.4 83 56-138 4-86 (87)
23 1whw_A Hypothetical protein ri 99.9 1.8E-22 6.2E-27 136.4 12.3 87 55-141 5-91 (99)
24 3ex7_B RNA-binding protein 8A; 99.9 7E-23 2.4E-27 144.5 10.6 97 48-144 12-108 (126)
25 2dnm_A SRP46 splicing factor; 99.9 1.4E-22 4.6E-27 138.1 11.3 90 52-141 7-96 (103)
26 2dnz_A Probable RNA-binding pr 99.9 2.5E-22 8.6E-27 134.7 12.4 86 56-141 3-88 (95)
27 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.5E-22 5.1E-27 137.6 11.1 88 55-142 9-96 (102)
28 1x5u_A Splicing factor 3B subu 99.9 3.1E-22 1.1E-26 136.7 12.2 90 52-141 9-98 (105)
29 1x4h_A RNA-binding protein 28; 99.9 4.1E-22 1.4E-26 137.4 12.9 91 51-141 8-104 (111)
30 1x5t_A Splicing factor 3B subu 99.9 1.6E-22 5.3E-27 136.0 10.5 87 56-142 3-90 (96)
31 2g4b_A Splicing factor U2AF 65 99.9 1.5E-22 5E-27 149.3 11.1 119 17-136 46-172 (172)
32 2cpz_A CUG triplet repeat RNA- 99.9 3.1E-22 1.1E-26 139.0 12.1 87 55-141 22-108 (115)
33 3p5t_L Cleavage and polyadenyl 99.9 3E-23 1E-27 138.1 6.6 82 59-140 2-85 (90)
34 2dng_A Eukaryotic translation 99.9 1E-21 3.5E-26 133.8 14.0 87 53-141 10-96 (103)
35 2do0_A HnRNP M, heterogeneous 99.9 1.9E-21 6.6E-26 134.6 15.6 88 53-141 10-97 (114)
36 2d9p_A Polyadenylate-binding p 99.9 8.4E-22 2.9E-26 134.2 13.4 87 54-142 11-97 (103)
37 2dnh_A Bruno-like 5, RNA bindi 99.9 9.2E-22 3.2E-26 134.3 13.5 87 54-141 11-100 (105)
38 2cqd_A RNA-binding region cont 99.9 1E-21 3.4E-26 136.6 13.8 90 51-141 10-99 (116)
39 1x5s_A Cold-inducible RNA-bind 99.9 3.5E-22 1.2E-26 135.8 11.0 88 54-141 8-95 (102)
40 2x1f_A MRNA 3'-END-processing 99.9 3.8E-22 1.3E-26 134.2 11.0 83 57-139 1-83 (96)
41 2yh0_A Splicing factor U2AF 65 99.9 3.5E-22 1.2E-26 150.4 12.0 85 56-140 112-196 (198)
42 2la6_A RNA-binding protein FUS 99.9 6.5E-22 2.2E-26 133.8 12.1 86 51-136 6-99 (99)
43 2cpf_A RNA binding motif prote 99.9 4.2E-22 1.4E-26 134.4 11.1 86 56-141 3-91 (98)
44 2cqc_A Arginine/serine-rich sp 99.9 7E-22 2.4E-26 132.4 12.1 85 53-137 10-94 (95)
45 2cph_A RNA binding motif prote 99.9 5.9E-22 2E-26 135.7 12.0 90 52-141 9-100 (107)
46 1wi8_A EIF-4B, eukaryotic tran 99.9 8.3E-22 2.8E-26 134.4 12.6 88 52-141 9-97 (104)
47 2dgp_A Bruno-like 4, RNA bindi 99.9 3.9E-22 1.3E-26 136.4 11.0 90 52-141 7-99 (106)
48 3mdf_A Peptidyl-prolyl CIS-tra 99.9 3.7E-22 1.3E-26 131.1 10.4 81 56-136 5-85 (85)
49 4f25_A Polyadenylate-binding p 99.9 4.6E-22 1.6E-26 138.3 11.2 81 58-140 5-85 (115)
50 3smz_A Protein raver-1, ribonu 99.9 3.8E-22 1.3E-26 158.6 12.3 132 7-140 122-266 (284)
51 2e5h_A Zinc finger CCHC-type a 99.9 7.4E-22 2.5E-26 132.1 11.8 84 53-136 11-94 (94)
52 2fy1_A RNA-binding motif prote 99.9 9.5E-22 3.2E-26 137.0 12.5 85 56-141 5-89 (116)
53 2div_A TRNA selenocysteine ass 99.9 5.7E-22 2E-26 134.0 10.7 85 55-139 6-95 (99)
54 2cpe_A RNA-binding protein EWS 99.9 1.1E-21 3.8E-26 135.7 12.2 89 53-141 10-106 (113)
55 4a8x_A RNA-binding protein wit 99.9 5.1E-22 1.7E-26 131.2 9.9 84 56-139 2-86 (88)
56 2kxn_B Transformer-2 protein h 99.9 4.3E-22 1.5E-26 141.3 10.0 88 53-140 41-128 (129)
57 3ns6_A Eukaryotic translation 99.9 1.1E-22 3.9E-27 138.0 6.6 81 58-138 6-93 (100)
58 1u6f_A Tcubp1, RNA-binding pro 99.9 1.7E-21 5.9E-26 139.5 13.1 88 55-142 39-126 (139)
59 1fje_B Nucleolin RBD12, protei 99.9 3.2E-22 1.1E-26 148.1 9.5 121 12-138 44-174 (175)
60 2jrs_A RNA-binding protein 39; 99.9 9.7E-22 3.3E-26 135.2 11.2 86 54-139 22-107 (108)
61 2dhg_A TRNA selenocysteine ass 99.9 1.2E-21 4.1E-26 133.6 11.2 85 56-141 7-93 (104)
62 2dgv_A HnRNP M, heterogeneous 99.9 1.4E-21 4.7E-26 130.3 11.3 85 54-140 4-88 (92)
63 2cq3_A RNA-binding protein 9; 99.9 5.7E-21 1.9E-25 130.0 14.6 89 52-142 9-97 (103)
64 2m2b_A RNA-binding protein 10; 99.9 4.2E-22 1.4E-26 141.6 8.7 89 52-141 17-111 (131)
65 2dh8_A DAZ-associated protein 99.9 1.2E-21 4.2E-26 133.8 10.6 89 52-141 10-98 (105)
66 3ucg_A Polyadenylate-binding p 99.9 1.8E-21 6.2E-26 128.9 10.9 81 58-139 6-86 (89)
67 2cqi_A Nucleolysin TIAR; RNA r 99.9 7.1E-21 2.4E-25 129.5 13.4 87 53-141 10-96 (103)
68 2ywk_A Putative RNA-binding pr 99.9 2.5E-21 8.7E-26 129.7 11.0 85 52-137 10-94 (95)
69 3ulh_A THO complex subunit 4; 99.9 3.7E-21 1.3E-25 131.7 12.0 83 53-136 24-106 (107)
70 3s7r_A Heterogeneous nuclear r 99.9 3.9E-21 1.3E-25 126.8 11.7 81 54-135 7-87 (87)
71 3n9u_C Cleavage and polyadenyl 99.9 1.5E-21 5.2E-26 142.7 10.6 82 57-138 54-137 (156)
72 2khc_A Testis-specific RNP-typ 99.9 2.2E-21 7.6E-26 135.2 10.6 83 54-136 36-118 (118)
73 2cqp_A RNA-binding protein 12; 99.9 2.7E-21 9.4E-26 130.4 10.8 83 56-138 13-95 (98)
74 2cpi_A CCR4-NOT transcription 99.9 4.2E-21 1.4E-25 132.6 11.8 87 53-139 10-102 (111)
75 2cqg_A TDP-43, TAR DNA-binding 99.9 1.3E-20 4.4E-25 128.2 13.7 86 54-141 11-96 (103)
76 1h2v_Z 20 kDa nuclear CAP bind 99.9 6.8E-21 2.3E-25 139.1 13.1 87 56-142 37-123 (156)
77 1x4c_A Splicing factor, argini 99.9 1.1E-20 3.8E-25 129.8 13.3 84 54-144 11-99 (108)
78 2dis_A Unnamed protein product 99.9 3.7E-21 1.3E-25 132.2 10.8 86 55-140 5-94 (109)
79 1p1t_A Cleavage stimulation fa 99.9 8.3E-22 2.8E-26 134.3 7.5 84 57-140 7-90 (104)
80 2dgx_A KIAA0430 protein; RRM d 99.9 4.2E-21 1.5E-25 129.2 10.8 81 56-139 7-91 (96)
81 2ghp_A U4/U6 snRNA-associated 99.9 1.7E-21 5.8E-26 155.4 10.2 130 6-138 144-291 (292)
82 2lea_A Serine/arginine-rich sp 99.9 9.4E-22 3.2E-26 140.5 7.8 89 54-142 43-131 (135)
83 1x5o_A RNA binding motif, sing 99.9 1.4E-20 5E-25 130.3 13.4 85 53-138 20-112 (114)
84 2dgw_A Probable RNA-binding pr 99.9 1.2E-20 4E-25 125.6 12.4 82 55-139 7-88 (91)
85 2jwn_A Embryonic polyadenylate 99.9 5.4E-21 1.8E-25 134.4 11.3 82 58-140 36-117 (124)
86 1s79_A Lupus LA protein; RRM, 99.8 1.9E-21 6.6E-26 132.6 8.1 80 56-137 9-88 (103)
87 2rs2_A Musashi-1, RNA-binding 99.8 4.8E-21 1.7E-25 131.9 10.1 85 55-140 22-106 (109)
88 2ek1_A RNA-binding protein 12; 99.8 2.8E-21 9.6E-26 129.5 8.6 81 57-137 14-94 (95)
89 2fc9_A NCL protein; structure 99.8 1.7E-20 5.8E-25 127.2 12.4 84 53-140 10-93 (101)
90 1x4d_A Matrin 3; structural ge 99.8 5.8E-21 2E-25 129.8 9.9 83 50-138 7-92 (102)
91 1x4e_A RNA binding motif, sing 99.8 1E-21 3.5E-26 129.1 6.0 81 56-136 3-83 (85)
92 1wez_A HnRNP H', FTP-3, hetero 99.8 1.2E-20 4.3E-25 128.4 11.5 84 54-140 11-94 (102)
93 2mss_A Protein (musashi1); RNA 99.8 1.5E-21 5.2E-26 125.3 6.5 75 60-135 1-75 (75)
94 1x4a_A Splicing factor, argini 99.8 2.3E-20 7.8E-25 128.3 12.8 85 53-140 17-101 (109)
95 2fc8_A NCL protein; structure 99.8 3.4E-20 1.1E-24 125.9 13.2 86 52-140 9-94 (102)
96 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.8E-21 6E-26 132.0 6.7 85 53-139 14-99 (100)
97 2kt5_A RNA and export factor-b 99.8 2.3E-20 7.7E-25 131.3 12.6 84 55-139 32-115 (124)
98 1x4b_A Heterogeneous nuclear r 99.8 9.5E-21 3.2E-25 131.6 10.6 84 57-141 26-109 (116)
99 1sjq_A Polypyrimidine tract-bi 99.8 5.1E-21 1.7E-25 130.4 9.0 81 55-141 13-95 (105)
100 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.4E-20 4.7E-25 134.7 11.3 82 54-135 59-140 (140)
101 1wg5_A Heterogeneous nuclear r 99.8 2.1E-20 7.2E-25 127.6 11.7 84 54-139 11-95 (104)
102 2cq1_A PTB-like protein L; RRM 99.8 5.2E-20 1.8E-24 125.0 13.3 83 53-141 10-94 (101)
103 2cq4_A RNA binding motif prote 99.8 5.5E-21 1.9E-25 132.5 8.4 82 57-139 24-105 (114)
104 2ki2_A SS-DNA binding protein 99.8 1.3E-21 4.5E-26 129.9 4.8 80 59-139 2-81 (90)
105 2i2y_A Fusion protein consists 99.8 9.9E-21 3.4E-25 137.3 9.6 82 53-139 68-149 (150)
106 2err_A Ataxin-2-binding protei 99.8 1.6E-20 5.6E-25 129.2 10.2 83 54-138 25-107 (109)
107 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3E-21 1E-25 124.4 6.1 76 59-135 1-76 (77)
108 3r27_A HnRNP L, heterogeneous 99.8 1.8E-20 6E-25 126.6 9.9 78 55-138 18-97 (100)
109 2a3j_A U1 small nuclear ribonu 99.8 1.1E-20 3.9E-25 133.5 9.3 83 54-139 25-111 (127)
110 1why_A Hypothetical protein ri 99.8 3.8E-20 1.3E-24 124.6 11.3 83 52-140 11-95 (97)
111 2nlw_A Eukaryotic translation 99.8 1.7E-20 6E-25 128.2 9.4 82 55-138 12-100 (105)
112 1wex_A Hypothetical protein (r 99.8 5.8E-20 2E-24 125.4 11.8 83 53-141 10-94 (104)
113 2dnq_A RNA-binding protein 4B; 99.8 6.4E-20 2.2E-24 121.8 11.7 79 55-141 5-83 (90)
114 3smz_A Protein raver-1, ribonu 99.8 3.1E-20 1.1E-24 147.5 12.0 118 21-140 55-177 (284)
115 2ad9_A Polypyrimidine tract-bi 99.8 3.8E-20 1.3E-24 129.0 10.8 83 54-142 27-111 (119)
116 2wbr_A GW182, gawky, LD47780P; 99.8 1.9E-20 6.5E-25 122.7 8.5 74 57-136 6-79 (89)
117 2cpy_A RNA-binding protein 12; 99.8 1.5E-20 5.1E-25 130.4 8.6 83 55-139 12-95 (114)
118 2dgu_A Heterogeneous nuclear r 99.8 8.4E-20 2.9E-24 124.3 12.1 81 56-144 9-89 (103)
119 2cpx_A Hypothetical protein FL 99.8 8.9E-21 3.1E-25 131.5 7.3 87 55-141 22-108 (115)
120 2db1_A Heterogeneous nuclear r 99.8 3E-20 1E-24 129.7 9.7 83 55-139 14-99 (118)
121 2cpj_A Non-POU domain-containi 99.8 1E-19 3.5E-24 122.9 11.7 85 50-140 7-91 (99)
122 2hgl_A HNRPF protein, heteroge 99.8 2E-20 7E-25 133.6 8.5 82 55-138 41-125 (136)
123 1wel_A RNA-binding protein 12; 99.8 1.3E-20 4.4E-25 132.6 7.4 83 55-138 22-104 (124)
124 2ghp_A U4/U6 snRNA-associated 99.8 2.1E-20 7.1E-25 149.1 9.3 128 6-139 67-198 (292)
125 2e5j_A Methenyltetrahydrofolat 99.8 8.3E-20 2.8E-24 123.0 10.6 82 53-139 14-95 (97)
126 3q2s_C Cleavage and polyadenyl 99.8 2.2E-20 7.6E-25 144.7 8.9 81 57-137 67-149 (229)
127 2hvz_A Splicing factor, argini 99.8 3.7E-20 1.3E-24 125.5 8.9 78 59-141 1-78 (101)
128 1fj7_A Nucleolin RBD1, protein 99.8 3.2E-21 1.1E-25 130.8 3.6 84 55-140 14-97 (101)
129 2lcw_A RNA-binding protein FUS 99.7 7E-22 2.4E-26 137.4 0.0 87 55-141 4-98 (116)
130 2dgt_A RNA-binding protein 30; 99.8 2.6E-19 9E-24 119.3 12.4 80 53-140 5-84 (92)
131 1x4g_A Nucleolysin TIAR; struc 99.8 1.1E-19 3.8E-24 124.9 10.8 80 56-141 23-102 (109)
132 1fjc_A Nucleolin RBD2, protein 99.8 5.4E-20 1.8E-24 123.5 8.7 83 54-141 12-94 (96)
133 2dnn_A RNA-binding protein 12; 99.8 5.2E-20 1.8E-24 126.7 8.7 80 56-138 14-93 (109)
134 2krb_A Eukaryotic translation 99.8 1.9E-20 6.5E-25 122.0 6.2 73 58-132 1-80 (81)
135 2jvr_A Nucleolar protein 3; RN 99.8 4.6E-20 1.6E-24 127.3 8.4 79 57-139 27-106 (111)
136 3pgw_A U1-A; protein-RNA compl 99.8 1E-19 3.5E-24 144.4 11.7 75 57-136 206-281 (282)
137 2cpd_A Apobec-1 stimulating pr 99.8 4.9E-19 1.7E-23 119.5 13.2 81 52-140 9-91 (99)
138 1wf1_A RNA-binding protein RAL 99.8 2.7E-19 9.1E-24 123.2 11.9 76 56-139 25-101 (110)
139 1nu4_A U1A RNA binding domain; 99.8 3.3E-20 1.1E-24 124.7 7.1 82 55-139 5-90 (97)
140 1x4f_A Matrin 3; structural ge 99.8 1.1E-19 3.6E-24 125.4 9.5 80 55-140 22-104 (112)
141 2ytc_A PRE-mRNA-splicing facto 99.8 1.8E-19 6.1E-24 118.2 10.2 78 53-136 7-85 (85)
142 2cqh_A IGF-II mRNA-binding pro 99.8 8.9E-20 3E-24 121.8 8.8 79 56-141 6-86 (93)
143 1iqt_A AUF1, heterogeneous nuc 99.8 1.1E-20 3.9E-25 121.1 4.2 75 60-135 1-75 (75)
144 1x5p_A Negative elongation fac 99.8 5.5E-19 1.9E-23 118.9 12.6 85 49-141 6-90 (97)
145 2jvo_A Nucleolar protein 3; nu 99.8 1.8E-19 6.1E-24 123.9 10.2 78 55-140 28-105 (108)
146 2xs2_A Deleted in azoospermia- 99.8 4.9E-20 1.7E-24 125.1 7.2 81 56-139 7-87 (102)
147 2e5g_A U6 snRNA-specific termi 99.8 3.4E-19 1.2E-23 119.2 11.2 78 56-139 6-83 (94)
148 4f02_A Polyadenylate-binding p 99.8 2.6E-19 8.9E-24 136.9 11.9 83 56-138 13-95 (213)
149 2lmi_A GRSF-1, G-rich sequence 99.8 2.4E-20 8.1E-25 128.0 5.4 82 55-138 8-92 (107)
150 2xnq_A Nuclear polyadenylated 99.8 3.4E-19 1.1E-23 120.1 11.0 77 54-138 18-95 (97)
151 2la4_A Nuclear and cytoplasmic 99.8 1.1E-19 3.8E-24 123.1 8.7 76 57-138 26-101 (101)
152 2kvi_A Nuclear polyadenylated 99.8 1.3E-19 4.3E-24 121.9 8.8 79 55-141 7-86 (96)
153 2dnp_A RNA-binding protein 14; 99.8 3.3E-19 1.1E-23 118.3 10.5 78 55-140 6-83 (90)
154 1fxl_A Paraneoplastic encephal 99.8 5.7E-19 2E-23 129.0 12.1 82 58-139 2-83 (167)
155 2f3j_A RNA and export factor b 99.8 1.9E-19 6.6E-24 134.1 9.7 84 54-138 84-167 (177)
156 3sde_A Paraspeckle component 1 99.8 2E-19 6.7E-24 141.7 10.2 117 22-141 57-182 (261)
157 2hgn_A Heterogeneous nuclear r 99.8 2.1E-20 7.3E-25 133.9 4.2 84 54-140 42-125 (139)
158 3lqv_A PRE-mRNA branch site pr 99.8 2.7E-19 9.1E-24 124.0 9.5 81 56-139 6-86 (115)
159 3tyt_A Heterogeneous nuclear r 99.8 2.1E-19 7.2E-24 136.9 9.8 77 57-135 122-204 (205)
160 2e44_A Insulin-like growth fac 99.8 2.9E-19 9.9E-24 119.9 9.2 80 56-139 13-93 (96)
161 3egn_A RNA-binding protein 40; 99.8 5.9E-20 2E-24 132.2 5.7 87 55-141 42-133 (143)
162 3beg_B Splicing factor, argini 99.8 2E-19 6.9E-24 124.9 8.1 80 56-142 14-98 (115)
163 1b7f_A Protein (SXL-lethal pro 99.8 5.5E-19 1.9E-23 129.4 10.9 83 57-139 2-84 (168)
164 1qm9_A Polypyrimidine tract-bi 99.8 2E-19 6.7E-24 135.7 8.4 78 56-138 118-197 (198)
165 3pgw_S U1-70K; protein-RNA com 99.8 7.6E-19 2.6E-23 147.7 12.6 85 56-140 100-184 (437)
166 1whx_A Hypothetical protein ri 99.8 3.3E-19 1.1E-23 123.1 8.4 77 57-139 9-85 (111)
167 2adc_A Polypyrimidine tract-bi 99.8 5.6E-19 1.9E-23 136.5 10.6 77 57-138 150-228 (229)
168 2dha_A FLJ20171 protein; RRM d 99.8 1.5E-19 5.2E-24 126.9 6.6 81 56-138 21-105 (123)
169 2j8a_A Histone-lysine N-methyl 99.8 3.7E-19 1.3E-23 124.2 8.2 78 59-136 3-94 (136)
170 2hgm_A HNRPF protein, heteroge 99.8 2.7E-19 9.3E-24 126.0 6.8 82 54-138 38-121 (126)
171 1wg1_A KIAA1579 protein, homol 99.8 1.1E-18 3.9E-23 115.3 9.0 75 57-138 4-78 (88)
172 2diu_A KIAA0430 protein; struc 99.8 1.5E-18 5.2E-23 114.7 9.0 74 57-140 7-86 (96)
173 1l3k_A Heterogeneous nuclear r 99.8 2.2E-18 7.4E-23 129.3 11.0 86 53-139 8-93 (196)
174 2cq2_A Hypothetical protein LO 99.8 1.1E-18 3.7E-23 120.6 8.4 78 56-139 23-107 (114)
175 1sjr_A Polypyrimidine tract-bi 99.8 3.7E-18 1.3E-22 124.8 11.5 78 58-139 46-125 (164)
176 3zzy_A Polypyrimidine tract-bi 99.8 4.7E-18 1.6E-22 119.9 11.5 76 59-139 29-107 (130)
177 3d2w_A TAR DNA-binding protein 99.8 2.8E-18 9.5E-23 113.8 9.2 76 55-139 8-85 (89)
178 3md3_A Nuclear and cytoplasmic 99.8 4E-18 1.4E-22 124.3 10.9 80 59-139 1-80 (166)
179 2dnl_A Cytoplasmic polyadenyla 99.8 5.1E-18 1.7E-22 117.5 10.3 78 56-136 6-86 (114)
180 2e5i_A Heterogeneous nuclear r 99.7 2.4E-17 8.3E-22 115.6 12.5 75 59-139 26-103 (124)
181 3tyt_A Heterogeneous nuclear r 99.7 6.1E-18 2.1E-22 128.8 10.2 79 56-139 2-81 (205)
182 1wf0_A TDP-43, TAR DNA-binding 99.7 3E-18 1E-22 113.2 6.8 79 56-141 3-81 (88)
183 2qfj_A FBP-interacting repress 99.7 7.9E-18 2.7E-22 128.1 9.5 82 57-138 27-108 (216)
184 2pe8_A Splicing factor 45; RRM 99.7 2.8E-17 9.6E-22 112.2 11.1 82 56-137 6-93 (105)
185 2bz2_A Negative elongation fac 99.7 1.2E-17 4.2E-22 116.9 9.5 78 55-140 36-113 (121)
186 3nmr_A Cugbp ELAV-like family 99.7 1.9E-17 6.5E-22 121.8 11.0 83 57-139 2-89 (175)
187 2voo_A Lupus LA protein; RNA-b 99.7 3.7E-17 1.3E-21 123.4 11.0 79 58-138 109-187 (193)
188 2cjk_A Nuclear polyadenylated 99.7 1.3E-17 4.5E-22 122.0 8.1 80 57-138 2-81 (167)
189 2hzc_A Splicing factor U2AF 65 99.7 2E-17 6.8E-22 108.7 7.9 71 57-134 5-86 (87)
190 3pgw_A U1-A; protein-RNA compl 99.7 8.1E-17 2.8E-21 127.6 11.6 82 55-139 6-91 (282)
191 3u1l_A PRE-mRNA-splicing facto 99.7 3.4E-17 1.2E-21 126.9 8.7 80 55-140 131-231 (240)
192 2adc_A Polypyrimidine tract-bi 99.7 1.8E-16 6.1E-21 122.4 12.0 82 53-139 29-111 (229)
193 2dit_A HIV TAT specific factor 99.7 7.9E-16 2.7E-20 106.1 12.6 83 53-139 10-103 (112)
194 1qm9_A Polypyrimidine tract-bi 99.7 2.2E-16 7.6E-21 118.8 10.2 78 57-139 2-80 (198)
195 1fje_B Nucleolin RBD12, protei 99.7 2.8E-17 9.7E-22 121.3 3.5 84 54-139 9-92 (175)
196 3sde_A Paraspeckle component 1 99.6 7.6E-16 2.6E-20 121.1 10.5 82 50-137 14-95 (261)
197 1jmt_A Splicing factor U2AF 35 99.6 1.3E-16 4.3E-21 108.8 4.7 72 63-135 20-103 (104)
198 3v4m_A Splicing factor U2AF 65 99.6 1.3E-15 4.3E-20 104.0 8.4 82 56-137 3-96 (105)
199 3ue2_A Poly(U)-binding-splicin 99.6 4.6E-15 1.6E-19 103.2 10.0 81 57-137 19-108 (118)
200 2g4b_A Splicing factor U2AF 65 99.6 3.4E-15 1.2E-19 109.5 8.9 75 57-138 3-88 (172)
201 2yh0_A Splicing factor U2AF 65 99.6 8.1E-15 2.8E-19 109.9 10.9 77 57-140 3-90 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.6 3E-14 1E-18 96.2 11.5 66 68-140 27-92 (100)
203 3tht_A Alkylated DNA repair pr 99.5 2.6E-14 8.9E-19 116.2 8.6 76 55-136 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.5 4.9E-13 1.7E-17 92.3 9.5 77 57-137 6-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 4.4E-12 1.5E-16 83.0 8.7 77 55-140 4-88 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 1.1E-11 3.9E-16 85.9 9.1 78 52-135 12-93 (121)
207 3dxb_A Thioredoxin N-terminall 99.2 1.1E-10 3.7E-15 89.4 8.8 69 69-137 140-212 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 8.2E-11 2.8E-15 77.4 6.5 74 54-136 11-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.6 2.7E-07 9.3E-12 61.9 8.4 70 58-133 21-95 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.1 4.7E-05 1.6E-09 50.6 10.3 76 56-140 6-86 (104)
211 1wey_A Calcipressin 1; structu 98.0 1.7E-05 5.9E-10 52.8 7.1 74 59-138 6-84 (104)
212 4f25_A Polyadenylate-binding p 98.0 1.1E-06 3.9E-11 60.0 0.3 65 7-74 32-113 (115)
213 1whv_A Poly(A)-specific ribonu 97.9 4.9E-05 1.7E-09 49.9 7.7 55 58-121 16-70 (100)
214 1uw4_A UPF3X; nonsense mediate 97.8 0.00023 7.7E-09 46.5 9.0 68 59-126 2-71 (91)
215 3ctr_A Poly(A)-specific ribonu 97.7 7.1E-05 2.4E-09 49.3 5.9 54 59-121 7-60 (101)
216 2lkz_A RNA-binding protein 5; 97.3 6.4E-05 2.2E-09 49.5 1.0 36 6-42 37-74 (95)
217 1wwh_A Nucleoporin 35, nucleop 97.2 0.0019 6.5E-08 44.1 8.0 70 58-135 24-94 (119)
218 2l08_A Regulator of nonsense t 96.9 0.0029 9.8E-08 41.6 6.3 78 58-135 9-93 (97)
219 2lxi_A RNA-binding protein 10; 96.8 0.00025 8.5E-09 46.1 0.4 28 6-34 28-55 (91)
220 2kn4_A Immunoglobulin G-bindin 96.8 0.0016 5.5E-08 46.3 4.7 36 87-124 2-37 (158)
221 2i2y_A Fusion protein consists 96.7 0.0013 4.6E-08 46.5 3.8 42 96-138 9-51 (150)
222 3p5t_L Cleavage and polyadenyl 96.6 0.0004 1.4E-08 44.8 0.6 27 6-33 29-55 (90)
223 3p3d_A Nucleoporin 53; structu 96.6 0.0028 9.5E-08 43.9 4.8 76 59-136 8-97 (132)
224 3s8s_A Histone-lysine N-methyl 96.6 0.00041 1.4E-08 46.8 0.3 28 7-35 33-60 (110)
225 3ns6_A Eukaryotic translation 96.4 0.00055 1.9E-08 45.2 0.2 27 7-34 39-65 (100)
226 2hvz_A Splicing factor, argini 96.4 0.00079 2.7E-08 44.3 1.0 20 7-32 27-46 (101)
227 4fxv_A ELAV-like protein 1; RN 96.4 0.00067 2.3E-08 44.8 0.4 28 6-34 45-72 (99)
228 3lqv_A PRE-mRNA branch site pr 96.2 0.0011 3.9E-08 44.5 1.0 64 7-84 35-109 (115)
229 3n9u_C Cleavage and polyadenyl 96.2 0.0011 3.6E-08 47.7 0.8 29 6-35 83-111 (156)
230 3pq1_A Poly(A) RNA polymerase; 96.2 0.0025 8.4E-08 53.6 3.1 56 58-119 53-108 (464)
231 2m2b_A RNA-binding protein 10; 96.0 0.0014 4.9E-08 45.3 0.7 32 9-41 54-86 (131)
232 1uaw_A Mouse-musashi-1; RNP-ty 96.0 0.0038 1.3E-07 38.5 2.6 24 7-31 27-50 (77)
233 1x5o_A RNA binding motif, sing 95.9 0.0031 1.1E-07 42.3 2.0 27 6-34 51-77 (114)
234 2rs2_A Musashi-1, RNA-binding 95.9 0.0036 1.2E-07 41.8 2.2 28 6-34 51-78 (109)
235 1s79_A Lupus LA protein; RRM, 95.8 0.0038 1.3E-07 41.4 2.1 26 7-34 38-63 (103)
236 2ki2_A SS-DNA binding protein 95.8 0.0041 1.4E-07 39.7 2.1 27 7-34 28-54 (90)
237 3q2s_C Cleavage and polyadenyl 95.7 0.0031 1.1E-07 48.1 1.5 28 6-34 96-123 (229)
238 2dng_A Eukaryotic translation 95.7 0.0033 1.1E-07 41.3 1.4 28 6-34 40-67 (103)
239 1x4e_A RNA binding motif, sing 95.7 0.0051 1.7E-07 38.8 2.2 28 6-34 31-58 (85)
240 2pe8_A Splicing factor 45; RRM 95.6 0.004 1.4E-07 41.6 1.6 29 7-35 40-68 (105)
241 2mss_A Protein (musashi1); RNA 95.6 0.0038 1.3E-07 38.4 1.4 28 7-35 26-53 (75)
242 2dgs_A DAZ-associated protein 95.6 0.0051 1.8E-07 40.0 2.0 28 6-34 36-63 (99)
243 1iqt_A AUF1, heterogeneous nuc 95.6 0.0033 1.1E-07 38.7 0.9 26 7-33 26-51 (75)
244 2dnn_A RNA-binding protein 12; 95.5 0.0053 1.8E-07 41.2 1.9 27 6-34 41-67 (109)
245 3ucg_A Polyadenylate-binding p 95.5 0.0069 2.4E-07 38.4 2.3 28 6-34 32-59 (89)
246 2div_A TRNA selenocysteine ass 95.5 0.004 1.4E-07 40.6 1.1 25 9-34 39-63 (99)
247 2khc_A Testis-specific RNP-typ 95.4 0.0078 2.7E-07 40.5 2.5 24 6-30 66-89 (118)
248 2cqd_A RNA-binding region cont 95.4 0.008 2.7E-07 40.4 2.5 29 6-35 43-71 (116)
249 2dgp_A Bruno-like 4, RNA bindi 95.4 0.0036 1.2E-07 41.3 0.7 27 7-34 40-66 (106)
250 2x1f_A MRNA 3'-END-processing 95.4 0.0039 1.3E-07 40.5 0.8 27 7-34 29-55 (96)
251 2dnm_A SRP46 splicing factor; 95.4 0.0057 1.9E-07 40.1 1.6 25 6-31 39-63 (103)
252 2hgm_A HNRPF protein, heteroge 95.4 0.005 1.7E-07 42.5 1.3 22 9-32 72-93 (126)
253 1whw_A Hypothetical protein ri 95.3 0.0054 1.8E-07 39.9 1.4 28 6-34 34-61 (99)
254 2cq4_A RNA binding motif prote 95.3 0.0061 2.1E-07 40.8 1.7 27 6-33 51-77 (114)
255 2dnz_A Probable RNA-binding pr 95.3 0.0089 3E-07 38.5 2.4 28 6-34 31-58 (95)
256 1x5t_A Splicing factor 3B subu 95.3 0.0064 2.2E-07 39.2 1.7 28 7-35 32-60 (96)
257 3s7r_A Heterogeneous nuclear r 95.3 0.0042 1.4E-07 39.4 0.7 28 6-34 37-64 (87)
258 1x5u_A Splicing factor 3B subu 95.3 0.0059 2E-07 40.2 1.5 28 6-34 41-68 (105)
259 2cqb_A Peptidyl-prolyl CIS-tra 95.3 0.0051 1.8E-07 40.2 1.1 28 6-34 38-65 (102)
260 2e5h_A Zinc finger CCHC-type a 95.3 0.0081 2.8E-07 38.6 2.0 28 6-34 42-69 (94)
261 1x4b_A Heterogeneous nuclear r 95.2 0.0082 2.8E-07 40.3 2.1 27 7-34 54-80 (116)
262 2j76_E EIF-4B, EIF4B, eukaryot 95.2 0.007 2.4E-07 39.6 1.7 27 7-34 45-72 (100)
263 2cpy_A RNA-binding protein 12; 95.2 0.0065 2.2E-07 40.8 1.5 26 8-35 44-69 (114)
264 3bs9_A Nucleolysin TIA-1 isofo 95.2 0.0039 1.3E-07 39.4 0.3 27 7-34 33-59 (87)
265 1wi8_A EIF-4B, eukaryotic tran 95.2 0.0074 2.5E-07 39.7 1.7 27 7-34 41-68 (104)
266 1x4h_A RNA-binding protein 28; 95.2 0.0067 2.3E-07 40.3 1.4 27 7-34 42-68 (111)
267 1p27_B RNA-binding protein 8A; 95.1 0.0044 1.5E-07 40.9 0.4 28 6-34 49-76 (106)
268 2j8a_A Histone-lysine N-methyl 95.1 0.0037 1.3E-07 43.5 -0.0 24 7-31 33-56 (136)
269 3md1_A Nuclear and cytoplasmic 95.1 0.0042 1.4E-07 38.9 0.3 27 7-34 28-54 (83)
270 1wez_A HnRNP H', FTP-3, hetero 95.1 0.0051 1.7E-07 40.6 0.7 25 7-33 41-65 (102)
271 1x5s_A Cold-inducible RNA-bind 95.1 0.0075 2.6E-07 39.4 1.5 27 7-34 39-65 (102)
272 2la6_A RNA-binding protein FUS 95.1 0.0045 1.6E-07 40.3 0.4 24 10-34 51-74 (99)
273 2kxn_B Transformer-2 protein h 95.1 0.0079 2.7E-07 41.5 1.7 28 6-34 72-99 (129)
274 2cqg_A TDP-43, TAR DNA-binding 95.1 0.0061 2.1E-07 40.0 1.0 28 6-34 41-68 (103)
275 2cq0_A Eukaryotic translation 95.0 0.006 2.1E-07 40.0 0.8 28 6-34 41-68 (103)
276 2jwn_A Embryonic polyadenylate 94.9 0.0097 3.3E-07 40.4 1.7 28 7-35 63-90 (124)
277 2dh8_A DAZ-associated protein 94.9 0.006 2E-07 40.2 0.6 25 6-31 42-66 (105)
278 2dhg_A TRNA selenocysteine ass 94.9 0.0061 2.1E-07 40.0 0.6 26 7-34 37-62 (104)
279 3mdf_A Peptidyl-prolyl CIS-tra 94.8 0.0053 1.8E-07 38.6 0.2 29 6-35 33-61 (85)
280 2dgo_A Cytotoxic granule-assoc 94.8 0.0071 2.4E-07 40.5 0.7 28 6-34 41-68 (115)
281 1oo0_B CG8781-PA, drosophila Y 94.8 0.0075 2.6E-07 40.0 0.8 27 7-34 53-79 (110)
282 2cqc_A Arginine/serine-rich sp 94.7 0.0064 2.2E-07 39.1 0.4 28 6-34 41-68 (95)
283 1u6f_A Tcubp1, RNA-binding pro 94.7 0.0064 2.2E-07 42.2 0.4 27 7-34 69-95 (139)
284 2cpz_A CUG triplet repeat RNA- 94.7 0.0063 2.2E-07 40.8 0.3 27 7-34 52-78 (115)
285 2fy1_A RNA-binding motif prote 94.7 0.012 4.3E-07 39.6 1.7 26 7-34 34-59 (116)
286 1p1t_A Cleavage stimulation fa 94.7 0.0062 2.1E-07 39.9 0.2 28 7-35 35-62 (104)
287 2lea_A Serine/arginine-rich sp 94.6 0.024 8.2E-07 39.3 3.2 28 7-35 74-101 (135)
288 2lmi_A GRSF-1, G-rich sequence 94.6 0.0079 2.7E-07 39.9 0.6 27 7-35 41-67 (107)
289 2dha_A FLJ20171 protein; RRM d 94.6 0.0081 2.8E-07 41.3 0.6 26 7-34 54-79 (123)
290 2hgn_A Heterogeneous nuclear r 94.6 0.022 7.4E-07 40.0 2.9 27 7-35 72-98 (139)
291 1jmt_A Splicing factor U2AF 35 94.6 0.0081 2.8E-07 39.9 0.6 27 7-35 54-80 (104)
292 2dis_A Unnamed protein product 94.5 0.014 4.8E-07 38.5 1.8 28 7-35 36-64 (109)
293 2ku7_A MLL1 PHD3-CYP33 RRM chi 94.5 0.0095 3.3E-07 41.2 0.9 29 6-35 89-117 (140)
294 2jrs_A RNA-binding protein 39; 94.5 0.0064 2.2E-07 40.5 -0.1 28 6-34 52-79 (108)
295 2hgl_A HNRPF protein, heteroge 94.5 0.0076 2.6E-07 42.2 0.2 27 7-35 74-100 (136)
296 1wg5_A Heterogeneous nuclear r 94.4 0.014 4.7E-07 38.5 1.5 24 10-35 46-69 (104)
297 2krb_A Eukaryotic translation 94.4 0.017 5.8E-07 36.0 1.8 28 7-37 34-61 (81)
298 3ex7_B RNA-binding protein 8A; 94.4 0.012 4E-07 40.1 1.1 28 6-34 48-75 (126)
299 2dnl_A Cytoplasmic polyadenyla 94.2 0.013 4.6E-07 39.2 1.0 24 10-34 37-63 (114)
300 2dgw_A Probable RNA-binding pr 94.2 0.012 4.2E-07 37.5 0.8 27 6-34 35-61 (91)
301 2cph_A RNA binding motif prote 94.2 0.018 6E-07 37.9 1.6 27 7-34 42-69 (107)
302 4a8x_A RNA-binding protein wit 94.1 0.0066 2.3E-07 38.4 -0.6 29 7-35 31-59 (88)
303 2fc8_A NCL protein; structure 94.1 0.011 3.8E-07 38.6 0.4 26 8-34 40-65 (102)
304 2db1_A Heterogeneous nuclear r 94.0 0.011 3.9E-07 40.0 0.3 27 7-35 47-73 (118)
305 2xs2_A Deleted in azoospermia- 93.9 0.0089 3.1E-07 39.1 -0.3 23 7-31 36-58 (102)
306 2cpe_A RNA-binding protein EWS 93.8 0.014 4.9E-07 38.8 0.6 25 9-34 52-76 (113)
307 2kt5_A RNA and export factor-b 93.8 0.017 5.8E-07 39.2 1.0 26 7-34 62-87 (124)
308 2dnh_A Bruno-like 5, RNA bindi 93.8 0.013 4.3E-07 38.5 0.3 26 7-34 42-67 (105)
309 2do4_A Squamous cell carcinoma 93.8 0.012 4.1E-07 38.3 0.2 26 7-34 44-69 (100)
310 2lcw_A RNA-binding protein FUS 92.8 0.012 4E-07 39.6 0.0 24 10-34 45-68 (116)
311 2wbr_A GW182, gawky, LD47780P; 93.6 0.046 1.6E-06 35.3 2.6 47 22-80 42-88 (89)
312 1h2v_Z 20 kDa nuclear CAP bind 93.5 0.018 6.2E-07 40.7 0.7 29 6-35 65-93 (156)
313 3v4m_A Splicing factor U2AF 65 93.5 0.021 7.3E-07 37.9 1.0 36 7-42 42-80 (105)
314 2cpi_A CCR4-NOT transcription 93.4 0.025 8.4E-07 37.7 1.3 28 7-34 45-74 (111)
315 2cpf_A RNA binding motif prote 93.4 0.014 4.6E-07 37.8 -0.1 27 7-34 32-61 (98)
316 2ywk_A Putative RNA-binding pr 93.3 0.022 7.5E-07 36.5 0.9 27 6-34 42-68 (95)
317 2nlw_A Eukaryotic translation 93.3 0.031 1.1E-06 36.8 1.5 22 7-31 48-69 (105)
318 3ulh_A THO complex subunit 4; 93.2 0.018 6E-07 37.9 0.2 26 7-34 56-81 (107)
319 2cqp_A RNA-binding protein 12; 93.2 0.0098 3.4E-07 38.5 -1.1 26 8-34 43-68 (98)
320 1rk8_A CG8781-PA, CG8781-PA pr 93.1 0.02 6.9E-07 41.0 0.4 28 6-34 98-125 (165)
321 2ek1_A RNA-binding protein 12; 93.0 0.01 3.5E-07 38.2 -1.2 27 7-34 42-68 (95)
322 1wel_A RNA-binding protein 12; 92.9 0.017 5.9E-07 39.2 -0.2 25 9-34 54-78 (124)
323 3d2w_A TAR DNA-binding protein 92.6 0.033 1.1E-06 35.6 0.8 24 7-36 38-61 (89)
324 3d45_A Poly(A)-specific ribonu 92.5 0.4 1.4E-05 40.7 7.7 56 58-122 440-495 (507)
325 2dgx_A KIAA0430 protein; RRM d 92.3 0.044 1.5E-06 35.4 1.2 24 7-34 40-63 (96)
326 3pgw_S U1-70K; protein-RNA com 91.8 0.07 2.4E-06 44.5 2.1 28 6-34 128-155 (437)
327 2do0_A HnRNP M, heterogeneous 91.6 0.037 1.3E-06 36.8 0.2 27 6-34 41-67 (114)
328 2d9p_A Polyadenylate-binding p 91.6 0.037 1.3E-06 36.1 0.2 25 7-34 42-66 (103)
329 3ue2_A Poly(U)-binding-splicin 91.4 0.029 1E-06 38.1 -0.5 35 7-42 52-92 (118)
330 2a3j_A U1 small nuclear ribonu 91.3 0.12 4.2E-06 35.4 2.6 17 18-35 68-84 (127)
331 2f3j_A RNA and export factor b 91.3 0.07 2.4E-06 38.8 1.4 27 7-35 115-141 (177)
332 2cq2_A Hypothetical protein LO 91.2 0.086 3E-06 35.6 1.7 22 22-43 62-85 (114)
333 2cqi_A Nucleolysin TIAR; RNA r 91.1 0.073 2.5E-06 34.6 1.3 25 7-34 42-66 (103)
334 2fc9_A NCL protein; structure 90.7 0.079 2.7E-06 34.3 1.2 24 9-34 41-64 (101)
335 1fj7_A Nucleolin RBD1, protein 90.4 0.039 1.3E-06 35.8 -0.6 21 11-32 47-67 (101)
336 2err_A Ataxin-2-binding protei 90.4 0.11 3.6E-06 34.4 1.6 23 7-32 56-78 (109)
337 2dgv_A HnRNP M, heterogeneous 89.8 0.064 2.2E-06 34.0 0.1 25 7-34 35-59 (92)
338 2cq3_A RNA-binding protein 9; 89.7 0.12 3.9E-06 33.6 1.3 25 7-34 42-66 (103)
339 2d9o_A DNAJ (HSP40) homolog, s 89.6 0.14 4.9E-06 33.6 1.7 22 7-34 44-65 (100)
340 1sjq_A Polypyrimidine tract-bi 88.5 0.16 5.4E-06 33.8 1.3 19 7-32 43-61 (105)
341 2cpx_A Hypothetical protein FL 88.4 0.088 3E-06 34.9 -0.0 19 15-34 60-78 (115)
342 2voo_A Lupus LA protein; RNA-b 87.8 0.14 4.9E-06 37.6 0.8 26 7-34 136-161 (193)
343 1wf0_A TDP-43, TAR DNA-binding 87.6 0.19 6.6E-06 31.5 1.3 23 7-35 32-54 (88)
344 3s6e_A RNA-binding protein 39; 84.4 0.3 1E-05 32.8 1.0 31 7-42 44-76 (114)
345 2cq1_A PTB-like protein L; RRM 84.0 0.37 1.3E-05 31.5 1.3 20 7-33 42-61 (101)
346 2ad9_A Polypyrimidine tract-bi 83.6 0.34 1.2E-05 32.8 1.0 19 7-32 58-76 (119)
347 1x4a_A Splicing factor, argini 82.5 0.45 1.6E-05 31.0 1.3 24 7-34 49-72 (109)
348 2dit_A HIV TAT specific factor 81.8 0.54 1.9E-05 31.0 1.4 13 22-34 63-75 (112)
349 1x4f_A Matrin 3; structural ge 81.0 0.55 1.9E-05 31.4 1.2 21 22-42 61-83 (112)
350 3dxb_A Thioredoxin N-terminall 80.9 0.34 1.2E-05 36.0 0.2 37 7-44 156-196 (222)
351 2jvr_A Nucleolar protein 3; RN 80.4 0.36 1.2E-05 32.2 0.2 14 21-34 65-78 (111)
352 2g0c_A ATP-dependent RNA helic 78.4 3.9 0.00013 24.8 4.6 68 60-136 2-75 (76)
353 3tht_A Alkylated DNA repair pr 77.7 0.58 2E-05 37.7 0.6 23 22-44 55-79 (345)
354 1x4g_A Nucleolysin TIAR; struc 77.5 0.64 2.2E-05 30.3 0.7 21 7-34 52-72 (109)
355 3egn_A RNA-binding protein 40; 77.3 0.33 1.1E-05 33.5 -0.8 18 16-34 86-103 (143)
356 1sjr_A Polypyrimidine tract-bi 74.4 1.1 3.8E-05 32.1 1.3 31 7-42 73-105 (164)
357 1x4c_A Splicing factor, argini 73.8 1.1 3.6E-05 29.2 1.0 20 7-34 42-61 (108)
358 3beg_B Splicing factor, argini 73.0 0.87 3E-05 30.1 0.4 20 7-34 43-62 (115)
359 3u1l_A PRE-mRNA-splicing facto 66.8 1.3 4.3E-05 33.8 0.2 25 7-38 170-194 (240)
360 1xn9_A 30S ribosomal protein S 50.7 42 0.0014 21.7 5.4 48 68-116 28-80 (101)
361 1ywx_A 30S ribosomal protein S 47.1 51 0.0017 21.4 5.3 47 68-115 28-79 (102)
362 4e8u_A Putative uncharacterize 45.2 81 0.0028 22.5 7.4 56 60-118 14-81 (172)
363 2v94_A RPS24, 30S ribosomal pr 44.2 53 0.0018 21.5 5.1 46 69-115 38-88 (107)
364 3u5c_Y RP50, 40S ribosomal pro 38.9 92 0.0031 21.3 6.2 46 69-115 34-84 (135)
365 2lfv_A Protein DAMX; cell divi 40.5 8.5 0.00029 25.3 0.0 62 58-124 25-88 (106)
366 3ts2_A Protein LIN-28 homolog 31.8 13 0.00044 25.9 0.6 28 73-108 2-29 (148)
367 3mfb_A Uncharacterized protein 29.1 96 0.0033 21.8 4.8 37 70-106 3-42 (157)
368 2g1d_A 30S ribosomal protein S 27.8 28 0.00095 22.5 1.6 46 69-115 30-80 (98)
369 2xzm_P RPS24E; ribosome, trans 27.0 1.1E+02 0.0037 21.3 4.6 46 69-115 32-82 (149)
370 4bby_A Alkyldihydroxyacetoneph 25.3 68 0.0023 27.9 4.2 56 65-121 350-409 (658)
371 2i9x_A Putative septation prot 23.3 1.4E+02 0.0046 18.7 4.2 26 84-109 5-30 (87)
372 3j21_T 50S ribosomal protein L 23.0 1.4E+02 0.0049 18.5 5.2 55 61-118 25-81 (86)
373 3fut_A Dimethyladenosine trans 21.0 87 0.003 23.8 3.6 34 59-93 111-144 (271)
374 3h7h_B Transcription elongatio 20.4 83 0.0028 20.4 2.9 34 85-123 41-74 (106)
375 1wvf_A 4-cresol dehydrogenase 20.1 86 0.0029 26.3 3.7 42 75-117 218-261 (520)
No 1
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=5.4e-25 Score=161.08 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=101.7
Q ss_pred eeEEeeccCcCCCCCCccCCCCChhHHH--hhhccc----CCC----------------CCCCCCCCCCCCCcEEEEcCC
Q psy15152 9 GIARLKEKARKKKGRGFGTETSTRNEIR--EYESME----TDV----------------GDEEPGPQRSVEGWILFVTGV 66 (192)
Q Consensus 9 ~v~~~~d~~~~~k~rG~gfv~f~~~~~~--~~~~~~----~~~----------------~~~~~~~~~~~~~~~l~V~nL 66 (192)
.+.++.+.. +++|||||+|...+.+ +...++ .++ .............++|||+||
T Consensus 2 ~~kl~ln~~---~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 78 (158)
T 2kn4_A 2 QYKLILNGK---TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNL 78 (158)
T ss_dssp EEEEEEECS---SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESC
T ss_pred cEEEEecCc---cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCC
Confidence 456677766 4899999999433322 222211 010 000111222344689999999
Q ss_pred CCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCCC
Q psy15152 67 HEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGPK 141 (192)
Q Consensus 67 p~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~~ 141 (192)
|+++++++|+++|+.||.|..+.++.|+.+|.++|||||+|.+.++|++|++.|||..+.|+.|.|.++.++.++
T Consensus 79 ~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 79 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 999999999999999999999999999889999999999999999999999999999999999999999876544
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=6.6e-25 Score=148.89 Aligned_cols=82 Identities=28% Similarity=0.458 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
..+++|||+|||+++|+++|+++|++||.|.+++++.|+.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy15152 136 FV 137 (192)
Q Consensus 136 ~~ 137 (192)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.92 E-value=2.6e-24 Score=164.19 Aligned_cols=134 Identities=24% Similarity=0.323 Sum_probs=105.4
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcccC---CCCCCCCCCC---------------CCCCCcEEEEcCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE--IREYESMET---DVGDEEPGPQ---------------RSVEGWILFVTGV 66 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~~---~~~~~~~~~~---------------~~~~~~~l~V~nL 66 (192)
+.+|.+++|+.+++ ++|||||+|...+ ..++..++. .+........ .....++|||+||
T Consensus 55 i~~v~i~~~~~~g~-~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 133 (216)
T 2qfj_A 55 IKSIDMSWDSVTMK-HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASV 133 (216)
T ss_dssp EEEEEECCC-CC-C-CCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECC
T ss_pred EEEEEEeecCCCCc-cCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCC
Confidence 67899999999995 9999999994333 233332322 2211110000 1234579999999
Q ss_pred CCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCCC
Q psy15152 67 HEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGPK 141 (192)
Q Consensus 67 p~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~~ 141 (192)
|.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|+.+++..
T Consensus 134 p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 134 HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 999999999999999999999999999889999999999999999999999999999999999999999876433
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.92 E-value=1.9e-24 Score=162.61 Aligned_cols=136 Identities=22% Similarity=0.366 Sum_probs=101.5
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH-H-Hhhhcc--cCCCCC-----C-----CCCCCCCCCCcEEEEcCCCCCCc
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE-I-REYESM--ETDVGD-----E-----EPGPQRSVEGWILFVTGVHEEAQ 71 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~-~-~~~~~~--~~~~~~-----~-----~~~~~~~~~~~~l~V~nLp~~~t 71 (192)
.+.+|.+++|+.+++ +||||||+|...+ + .++... ...+.. . ...+......++|||+|||++++
T Consensus 39 ~i~~v~i~~~~~~g~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 117 (196)
T 1l3k_A 39 TLTDCVVMRDPNTKR-SRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTE 117 (196)
T ss_dssp CEEEEEEEECTTTCC-EEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEEEECCTTTCC
T ss_pred CEEEEEEEEcCCCCC-ccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCC
Confidence 366899999999996 9999999993333 2 222221 111100 0 01112233458999999999999
Q ss_pred HHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCCCCC
Q psy15152 72 EDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGPKKV 143 (192)
Q Consensus 72 ~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~~~~ 143 (192)
+++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++. ++..+.|+.|.|.+|.++.....
T Consensus 118 ~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 118 EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 999999999999999999999988999999999999999999999986 89999999999999988765443
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.91 E-value=5.8e-25 Score=168.48 Aligned_cols=131 Identities=17% Similarity=0.262 Sum_probs=103.7
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcccCC---CCCC-----CC-CCCCCCCCcEEEEcCCCCCCcHHH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE--IREYESMETD---VGDE-----EP-GPQRSVEGWILFVTGVHEEAQEDD 74 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~~~---~~~~-----~~-~~~~~~~~~~l~V~nLp~~~t~~~ 74 (192)
.+.+|.+++|+.+++ ++|||||+|...+ ..++..++.. +... .. .........+|||+|||+++++++
T Consensus 41 ~I~~v~i~~d~~tg~-~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~ 119 (213)
T 4f02_A 41 PILSIRVCRDMITRR-SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKA 119 (213)
T ss_dssp CEEEEEEEECTTTCC-EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHH
T ss_pred CEEEEEEecccCCCC-ccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHH
Confidence 357899999999996 9999999994333 3333333322 1100 00 011122356899999999999999
Q ss_pred HHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCC
Q psy15152 75 MHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKG 139 (192)
Q Consensus 75 L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~ 139 (192)
|+++|+.||.|..++|+.|. +.++|||||+|.+.++|++|++.|||..|.|++|.|.+|.++.
T Consensus 120 l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 120 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred HHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 99999999999999999985 5589999999999999999999999999999999999998653
No 6
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.91 E-value=4.5e-25 Score=162.07 Aligned_cols=130 Identities=20% Similarity=0.312 Sum_probs=104.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcc-cCCCCCCCCCC----CCCCCCcEEEEcCCCCCCcHHHHHHhh
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE--IREYESM-ETDVGDEEPGP----QRSVEGWILFVTGVHEEAQEDDMHEKF 79 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~-~~~~~~~~~~~----~~~~~~~~l~V~nLp~~~t~~~L~~~F 79 (192)
+.+|.+++|+.+++ +||||||+|...+ ..+.... ...+....... .......+|||+|||.++++++|+++|
T Consensus 30 i~~v~i~~~~~~g~-~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F 108 (167)
T 2cjk_A 30 VTDLKIMKDPATGR-SRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFF 108 (167)
T ss_dssp EEEEECCCCTTTSS-CCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHH
T ss_pred EEEEEEEECCCCCC-ccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHH
Confidence 66899999999996 9999999993333 3333321 12221111111 112235789999999999999999999
Q ss_pred ccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccC
Q psy15152 80 SEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVK 138 (192)
Q Consensus 80 ~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~ 138 (192)
++||.|..+.++.++.+|.++|||||+|.+.++|++|++ +++..+.|+.|.|.||.++
T Consensus 109 ~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 109 SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999999999999998899999999999999999999998 8999999999999999875
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.5e-24 Score=154.43 Aligned_cols=128 Identities=17% Similarity=0.347 Sum_probs=103.1
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcccCC---CC-----C-CCCCCCCCCCCcEEEEcCCCCCCcHHHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE--IREYESMETD---VG-----D-EEPGPQRSVEGWILFVTGVHEEAQEDDM 75 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~~~---~~-----~-~~~~~~~~~~~~~l~V~nLp~~~t~~~L 75 (192)
+.+|.+++|+. + +++|||||+|...+ ..+...++.. +. . .........+.++|||+|||.++++++|
T Consensus 27 i~~v~i~~~~~-~-~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l 104 (166)
T 3md3_A 27 IANIKIMIDKN-N-KNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETL 104 (166)
T ss_dssp EEEEEEECCCC---CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHH
T ss_pred eEEEEEEECCC-C-CCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHH
Confidence 56888998875 4 39999999994333 2233233221 11 0 1112234456789999999999999999
Q ss_pred HHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 76 HEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 76 ~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.||.
T Consensus 105 ~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 105 RNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999999999999999998899999999999999999999999999999999999999985
No 8
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.91 E-value=8.4e-24 Score=156.08 Aligned_cols=135 Identities=68% Similarity=1.186 Sum_probs=84.0
Q ss_pred eEEeeccCcCCCCCCccCCCCChhHHHhhhcccC-CCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEE
Q psy15152 10 IARLKEKARKKKGRGFGTETSTRNEIREYESMET-DVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNL 88 (192)
Q Consensus 10 v~~~~d~~~~~k~rG~gfv~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~ 88 (192)
+..+..+..++++||++-..-.......+..+.. ......+.+....++++|||+|||+.+++++|+++|++||.|..+
T Consensus 23 ~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v 102 (165)
T 1rk8_A 23 IVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNI 102 (165)
T ss_dssp -------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred chhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEE
Confidence 3444444555445554433222222334444321 111245667777888999999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCCCCCC
Q psy15152 89 HLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGPKKVA 144 (192)
Q Consensus 89 ~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~~~~~ 144 (192)
.|+.++.+|.++|||||+|.+.++|++|++.|||..|.|+.|.|.|+.++..+..+
T Consensus 103 ~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~~ 158 (165)
T 1rk8_A 103 HLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVK 158 (165)
T ss_dssp EEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-----
T ss_pred EEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCCC
Confidence 99999989999999999999999999999999999999999999999987655443
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.90 E-value=1.2e-23 Score=154.39 Aligned_cols=127 Identities=23% Similarity=0.311 Sum_probs=103.8
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH--HhhhcccC---CCC-----CCCCCCCCCCCCcEEEEcCCCCCCcHHHHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI--REYESMET---DVG-----DEEPGPQRSVEGWILFVTGVHEEAQEDDMH 76 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~--~~~~~~~~---~~~-----~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 76 (192)
+.++.+++|+.+++ ++|||||+|...+. .+...++. .+. ...+ .......++|||+|||.++++++|+
T Consensus 30 i~~v~i~~~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~-~~~~~~~~~l~v~nl~~~~t~~~l~ 107 (168)
T 1b7f_A 30 INTCRIMRDYKTGY-SYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP-GGESIKDTNLYVTNLPRTITDDQLD 107 (168)
T ss_dssp EEEEECCEETTTTE-ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC-CSSTTTTCEEEEESCCTTCCHHHHH
T ss_pred eeEEEEEEeCCCCc-cceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC-CcccCCCCCEEEeCCCCCCCHHHHH
Confidence 56889999999996 99999999943332 22222322 121 1111 2233456899999999999999999
Q ss_pred HhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEec
Q psy15152 77 EKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG--QTVTVDWC 135 (192)
Q Consensus 77 ~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g--~~l~v~~a 135 (192)
++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.| ++|.|.||
T Consensus 108 ~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 108 TIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999999998899999999999999999999999999999988 99999986
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.90 E-value=1.9e-23 Score=154.19 Aligned_cols=129 Identities=17% Similarity=0.298 Sum_probs=101.9
Q ss_pred eeeeeEEeeccCcC--CCCCCccCCCCChhH--HHhhhcccCCCCC-----------CCCCCCCCCCCcEEEEcCCCCCC
Q psy15152 6 RLKGIARLKEKARK--KKGRGFGTETSTRNE--IREYESMETDVGD-----------EEPGPQRSVEGWILFVTGVHEEA 70 (192)
Q Consensus 6 ~~~~v~~~~d~~~~--~k~rG~gfv~f~~~~--~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~V~nLp~~~ 70 (192)
.+.++.+++|+.++ + +||||||+|...+ ..+...++...-. ..+........++|||+|||+++
T Consensus 29 ~i~~v~i~~~~~~~~~~-~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 107 (175)
T 3nmr_A 29 AVYEINVLRDRSQNPPQ-SKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKC 107 (175)
T ss_dssp CEEEEEEEEECSSSSCE-EEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTC
T ss_pred CEEEEEEEecCCCCCCC-cceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcC
Confidence 35689999999987 5 9999999994333 3333333321100 01111223356899999999999
Q ss_pred cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC---CeEEEEEecc
Q psy15152 71 QEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL---GQTVTVDWCF 136 (192)
Q Consensus 71 t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~---g~~l~v~~a~ 136 (192)
++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|++|++.|||..+. |++|.|.||.
T Consensus 108 t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 108 TENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999999999999996 7999999999999999999999999998876 4999999984
No 11
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.90 E-value=4.4e-23 Score=142.45 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+.++|||+|||+++++++|+++|++||.|.++.|+.|+.||+++|||||+|.+.++|++|++.|||..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q psy15152 136 FVK 138 (192)
Q Consensus 136 ~~~ 138 (192)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 644
No 12
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=4e-23 Score=141.42 Aligned_cols=93 Identities=75% Similarity=1.399 Sum_probs=86.1
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy15152 48 EEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG 127 (192)
Q Consensus 48 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g 127 (192)
..+.+....++++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|
T Consensus 13 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 13 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp --CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 45666777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecccCCC
Q psy15152 128 QTVTVDWCFVKGP 140 (192)
Q Consensus 128 ~~l~v~~a~~~~~ 140 (192)
+.|.|.|+.++++
T Consensus 93 ~~l~V~~a~~~~~ 105 (106)
T 1p27_B 93 QPISVDWCFVRGP 105 (106)
T ss_dssp SBCEEEESEESSC
T ss_pred cEEEEEeecCCCC
Confidence 9999999987753
No 13
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.90 E-value=2.5e-22 Score=139.43 Aligned_cols=91 Identities=23% Similarity=0.433 Sum_probs=83.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
.....+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.|++..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33445678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecccCCCCC
Q psy15152 132 VDWCFVKGPKK 142 (192)
Q Consensus 132 v~~a~~~~~~~ 142 (192)
|.|+.++....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99998775543
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.90 E-value=2.3e-23 Score=152.48 Aligned_cols=127 Identities=22% Similarity=0.413 Sum_probs=102.6
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH--HhhhcccC---CCC-----CCCCCCCCCCCCcEEEEcCCCCCCcHHHHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI--REYESMET---DVG-----DEEPGPQRSVEGWILFVTGVHEEAQEDDMH 76 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~--~~~~~~~~---~~~-----~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 76 (192)
+.++.+++|+.+++ ++|||||+|...+. .+...++. .+. ...+ ........+|||+|||.++++++|+
T Consensus 29 i~~v~~~~~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~-~~~~~~~~~l~v~nl~~~~t~~~l~ 106 (167)
T 1fxl_A 29 IESCKLVRDKITGQ-SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP-SSASIRDANLYVSGLPKTMTQKELE 106 (167)
T ss_dssp EEEEEEEECTTTCC-EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC-CCGGGTTCEEEEESCCTTCCHHHHH
T ss_pred eEEEEEEeCCCCCc-ceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC-CcccCCCCcEEECCCCCcCCHHHHH
Confidence 56899999999995 99999999943332 22222322 121 1111 1223456789999999999999999
Q ss_pred HhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE--EEEEec
Q psy15152 77 EKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT--VTVDWC 135 (192)
Q Consensus 77 ~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~--l~v~~a 135 (192)
++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+. |.|.||
T Consensus 107 ~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 107 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999999889999999999999999999999999999999964 888886
No 15
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.90 E-value=4.9e-24 Score=142.38 Aligned_cols=83 Identities=24% Similarity=0.420 Sum_probs=76.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC-CCeeCCeEEEEEec
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYG-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALN-GTTILGQTVTVDWC 135 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~-~~~~~g~~l~v~~a 135 (192)
+++|||+|||+++|+++|+++|++|| .|.++++++|+.+|.++|||||+|.+.++|++|++.++ +..++|++|.|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999874 56799999999999
Q ss_pred ccCCC
Q psy15152 136 FVKGP 140 (192)
Q Consensus 136 ~~~~~ 140 (192)
.+++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87653
No 16
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.9e-22 Score=137.42 Aligned_cols=88 Identities=25% Similarity=0.436 Sum_probs=82.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy15152 134 WCFVKGPK 141 (192)
Q Consensus 134 ~a~~~~~~ 141 (192)
|+.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99876543
No 17
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.89 E-value=6e-23 Score=141.50 Aligned_cols=94 Identities=77% Similarity=1.316 Sum_probs=86.6
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy15152 48 EEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG 127 (192)
Q Consensus 48 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g 127 (192)
..+.+....++++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|+..|+|..+.|
T Consensus 16 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 95 (110)
T 1oo0_B 16 LEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 95 (110)
T ss_dssp --CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45667777888999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q psy15152 128 QTVTVDWCFVKGPK 141 (192)
Q Consensus 128 ~~l~v~~a~~~~~~ 141 (192)
+.|.|.|+.+++.+
T Consensus 96 ~~l~V~~a~~~~~~ 109 (110)
T 1oo0_B 96 QTIQVDWCFVKGPK 109 (110)
T ss_dssp EECEEEESEESSCC
T ss_pred cEEEEEEcccCCCC
Confidence 99999999887543
No 18
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.6e-22 Score=136.77 Aligned_cols=88 Identities=17% Similarity=0.375 Sum_probs=81.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
....+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ |++..+.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 334556899999999999999999999999999999999999899999999999999999999998 9999999999999
Q ss_pred EecccCCCC
Q psy15152 133 DWCFVKGPK 141 (192)
Q Consensus 133 ~~a~~~~~~ 141 (192)
.++.++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999876544
No 19
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.89 E-value=2.5e-23 Score=139.98 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCC--eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC----eeCCe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGE--IKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGT----TILGQ 128 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~--i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~----~~~g~ 128 (192)
...-.+|||+|||+++|+++|+++|++||. +.+|++++|+.||+++|||||+|.+.++|++|++.|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345578999999999999999999999995 679999999999999999999999999999999999997 48999
Q ss_pred EEEEEeccc
Q psy15152 129 TVTVDWCFV 137 (192)
Q Consensus 129 ~l~v~~a~~ 137 (192)
+|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999964
No 20
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.89 E-value=1.7e-22 Score=132.14 Aligned_cols=82 Identities=22% Similarity=0.488 Sum_probs=78.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
+++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred CC
Q psy15152 138 KG 139 (192)
Q Consensus 138 ~~ 139 (192)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 21
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=3.1e-22 Score=135.59 Aligned_cols=89 Identities=28% Similarity=0.377 Sum_probs=82.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy15152 51 GPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTV 130 (192)
Q Consensus 51 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l 130 (192)
......+.++|||+|||+++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455667889999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred EEEecccCCC
Q psy15152 131 TVDWCFVKGP 140 (192)
Q Consensus 131 ~v~~a~~~~~ 140 (192)
.|.++.++..
T Consensus 89 ~v~~a~~~~~ 98 (100)
T 2do4_A 89 KVAISNSGPS 98 (100)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 22
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=133.87 Aligned_cols=83 Identities=23% Similarity=0.397 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+.++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34678999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccC
Q psy15152 136 FVK 138 (192)
Q Consensus 136 ~~~ 138 (192)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 865
No 23
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.8e-22 Score=136.44 Aligned_cols=87 Identities=28% Similarity=0.371 Sum_probs=81.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.||+..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy15152 135 CFVKGPK 141 (192)
Q Consensus 135 a~~~~~~ 141 (192)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9877543
No 24
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.89 E-value=7e-23 Score=144.46 Aligned_cols=97 Identities=73% Similarity=1.337 Sum_probs=88.0
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy15152 48 EEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG 127 (192)
Q Consensus 48 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g 127 (192)
..+.+....+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.||+..|.|
T Consensus 12 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 91 (126)
T 3ex7_B 12 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 91 (126)
T ss_dssp --CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 45667777888999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eEEEEEecccCCCCCCC
Q psy15152 128 QTVTVDWCFVKGPKKVA 144 (192)
Q Consensus 128 ~~l~v~~a~~~~~~~~~ 144 (192)
+.|.|.|+.++......
T Consensus 92 ~~l~v~~a~~~~~~~~~ 108 (126)
T 3ex7_B 92 QPISVDWCFVRGPPKGK 108 (126)
T ss_dssp SBCEEEESEESSSCCC-
T ss_pred eEEEEEEecCCCCCCCC
Confidence 99999999887655433
No 25
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=138.10 Aligned_cols=90 Identities=18% Similarity=0.297 Sum_probs=83.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
+....+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.||+..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34445678999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEecccCCCC
Q psy15152 132 VDWCFVKGPK 141 (192)
Q Consensus 132 v~~a~~~~~~ 141 (192)
|.++.+....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876543
No 26
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.5e-22 Score=134.68 Aligned_cols=86 Identities=27% Similarity=0.377 Sum_probs=81.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35678999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy15152 136 FVKGPK 141 (192)
Q Consensus 136 ~~~~~~ 141 (192)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876544
No 27
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.5e-22 Score=137.59 Aligned_cols=88 Identities=28% Similarity=0.535 Sum_probs=82.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.||+..+.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCCCC
Q psy15152 135 CFVKGPKK 142 (192)
Q Consensus 135 a~~~~~~~ 142 (192)
+.++..+.
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98775443
No 28
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.1e-22 Score=136.72 Aligned_cols=90 Identities=24% Similarity=0.361 Sum_probs=83.2
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
+....+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34445678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecccCCCC
Q psy15152 132 VDWCFVKGPK 141 (192)
Q Consensus 132 v~~a~~~~~~ 141 (192)
|.++.++...
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999876543
No 29
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=4.1e-22 Score=137.38 Aligned_cols=91 Identities=21% Similarity=0.387 Sum_probs=83.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC------CCe
Q psy15152 51 GPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALN------GTT 124 (192)
Q Consensus 51 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~------~~~ 124 (192)
.+....+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.|+ +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 34445567889999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred eCCeEEEEEecccCCCC
Q psy15152 125 ILGQTVTVDWCFVKGPK 141 (192)
Q Consensus 125 ~~g~~l~v~~a~~~~~~ 141 (192)
+.|+.|.|.|+.++...
T Consensus 88 ~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSSCEEEEECCCCCCCC
T ss_pred EcCEEEEEEECCCCccC
Confidence 99999999999876543
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.6e-22 Score=135.96 Aligned_cols=87 Identities=29% Similarity=0.484 Sum_probs=81.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEE-EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNL-HLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~-~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
.++++|||+|||+++++++|+++|++||.|..+ .++.++.+|.++|||||+|.+.++|++|++.||+..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456889999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cccCCCCC
Q psy15152 135 CFVKGPKK 142 (192)
Q Consensus 135 a~~~~~~~ 142 (192)
+.++..+.
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98775443
No 31
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.88 E-value=1.5e-22 Score=149.28 Aligned_cols=119 Identities=21% Similarity=0.285 Sum_probs=93.0
Q ss_pred CcCCCCCCccCCCCChhHHHhh-hcccCC---CCCC---CC-CCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEE
Q psy15152 17 ARKKKGRGFGTETSTRNEIREY-ESMETD---VGDE---EP-GPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNL 88 (192)
Q Consensus 17 ~~~~k~rG~gfv~f~~~~~~~~-~~~~~~---~~~~---~~-~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~ 88 (192)
..++ +||||||+|...+.+.. ..++.. +... .+ ........++|||+|||.++++++|+++|++||.|..+
T Consensus 46 ~~~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v 124 (172)
T 2g4b_A 46 QINQ-DKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAF 124 (172)
T ss_dssp EEET-TTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEE
T ss_pred EecC-CCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEE
Confidence 3343 79999999943333222 222221 1100 00 11122346889999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 89 HLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 89 ~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|.|+||.
T Consensus 125 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 125 NLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999998899999999999999999999999999999999999999973
No 32
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=3.1e-22 Score=138.97 Aligned_cols=87 Identities=25% Similarity=0.369 Sum_probs=81.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy15152 135 CFVKGPK 141 (192)
Q Consensus 135 a~~~~~~ 141 (192)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9876543
No 33
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.88 E-value=3e-23 Score=138.12 Aligned_cols=82 Identities=22% Similarity=0.256 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYG--EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
.+|||+|||+++++++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q psy15152 137 VKGP 140 (192)
Q Consensus 137 ~~~~ 140 (192)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 34
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=1e-21 Score=133.80 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=80.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
....+.++|||+|||+++++++|+++|+.|| |..+.++.++.+|.++|||||+|.+.++|++|+ .||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445578999999999999999999999997 999999999999999999999999999999999 89999999999999
Q ss_pred EecccCCCC
Q psy15152 133 DWCFVKGPK 141 (192)
Q Consensus 133 ~~a~~~~~~ 141 (192)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999876543
No 35
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.9e-21 Score=134.63 Aligned_cols=88 Identities=23% Similarity=0.267 Sum_probs=80.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
....+.++|||+|||+++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 334556889999999999999999999999999999999997 7999999999999999999999999999999999999
Q ss_pred EecccCCCC
Q psy15152 133 DWCFVKGPK 141 (192)
Q Consensus 133 ~~a~~~~~~ 141 (192)
.++.....+
T Consensus 89 ~~a~~~~~~ 97 (114)
T 2do0_A 89 KMDERALPK 97 (114)
T ss_dssp EECSCCCCC
T ss_pred EEcccCCCC
Confidence 999765444
No 36
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=8.4e-22 Score=134.15 Aligned_cols=87 Identities=21% Similarity=0.378 Sum_probs=80.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+.++|||+|||+++++++|+++|++||.|..+.++.+ +|.++|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3446788999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecccCCCCC
Q psy15152 134 WCFVKGPKK 142 (192)
Q Consensus 134 ~a~~~~~~~ 142 (192)
|+.++..+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2d9p_A 89 LAQRKEERQ 97 (103)
T ss_dssp ECSSCCCCC
T ss_pred EecccccCC
Confidence 998775443
No 37
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=9.2e-22 Score=134.34 Aligned_cols=87 Identities=26% Similarity=0.370 Sum_probs=80.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC---eEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG---QTV 130 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g---~~l 130 (192)
...+.++|||+|||+++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|++|++.||+..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34557899999999999999999999999999999999997 89999999999999999999999999999998 999
Q ss_pred EEEecccCCCC
Q psy15152 131 TVDWCFVKGPK 141 (192)
Q Consensus 131 ~v~~a~~~~~~ 141 (192)
.|.|+.++..+
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999877544
No 38
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1e-21 Score=136.60 Aligned_cols=90 Identities=23% Similarity=0.382 Sum_probs=82.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy15152 51 GPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTV 130 (192)
Q Consensus 51 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l 130 (192)
.+....+.++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|++.|++ .+.|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 345556678999999999999999999999999999999999998999999999999999999999999998 8999999
Q ss_pred EEEecccCCCC
Q psy15152 131 TVDWCFVKGPK 141 (192)
Q Consensus 131 ~v~~a~~~~~~ 141 (192)
.|.++.+....
T Consensus 89 ~V~~a~~~~~~ 99 (116)
T 2cqd_A 89 NVNLAYLGAKP 99 (116)
T ss_dssp EEEESTTTCCC
T ss_pred EEEEcccCCCc
Confidence 99999865433
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.5e-22 Score=135.78 Aligned_cols=88 Identities=26% Similarity=0.444 Sum_probs=82.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456889999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy15152 134 WCFVKGPK 141 (192)
Q Consensus 134 ~a~~~~~~ 141 (192)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876544
No 40
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.88 E-value=3.8e-22 Score=134.24 Aligned_cols=83 Identities=20% Similarity=0.397 Sum_probs=79.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
++++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|++|++.|+|..++|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35789999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred cCC
Q psy15152 137 VKG 139 (192)
Q Consensus 137 ~~~ 139 (192)
+++
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 41
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.88 E-value=3.5e-22 Score=150.40 Aligned_cols=85 Identities=27% Similarity=0.427 Sum_probs=80.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
...++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|.|.|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy15152 136 FVKGP 140 (192)
Q Consensus 136 ~~~~~ 140 (192)
.++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 42
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.88 E-value=6.5e-22 Score=133.82 Aligned_cols=86 Identities=30% Similarity=0.459 Sum_probs=80.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q psy15152 51 GPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKN--------LHLNLDRRTGFLKGYALVEYDSYKEASAARDALNG 122 (192)
Q Consensus 51 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~ 122 (192)
.+......++|||+|||+++++++|+++|+.||.|.. +.++.++.+|.++|||||+|.+.++|++|++.|||
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3445566789999999999999999999999999999 99999998999999999999999999999999999
Q ss_pred CeeCCeEEEEEecc
Q psy15152 123 TTILGQTVTVDWCF 136 (192)
Q Consensus 123 ~~~~g~~l~v~~a~ 136 (192)
..+.|+.|+|++|.
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999974
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=4.2e-22 Score=134.42 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=79.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCC---CCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRR---TGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~---tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
.+.++|||+|||+++++++|+++|+.||.|..+.++.++. |+.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4567899999999999999999999999999999999876 6699999999999999999999999999999999999
Q ss_pred EecccCCCC
Q psy15152 133 DWCFVKGPK 141 (192)
Q Consensus 133 ~~a~~~~~~ 141 (192)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 44
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=7e-22 Score=132.43 Aligned_cols=85 Identities=25% Similarity=0.387 Sum_probs=79.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
....+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33455688999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred Eeccc
Q psy15152 133 DWCFV 137 (192)
Q Consensus 133 ~~a~~ 137 (192)
.|+.+
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 45
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=5.9e-22 Score=135.69 Aligned_cols=90 Identities=22% Similarity=0.428 Sum_probs=83.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeec-CCCCCcceEEEEEecCHHHHHHHHHHh-CCCeeCCeE
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLD-RRTGFLKGYALVEYDSYKEASAARDAL-NGTTILGQT 129 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~-~~tg~~~g~afV~f~~~~~a~~al~~l-~~~~~~g~~ 129 (192)
+....+.++|||+|||+++++++|+++|+.||.|..+.++.+ +.+|.++|||||+|.+.++|++|++.| |+..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344556789999999999999999999999999999999999 789999999999999999999999999 999999999
Q ss_pred EEEEecccCCCC
Q psy15152 130 VTVDWCFVKGPK 141 (192)
Q Consensus 130 l~v~~a~~~~~~ 141 (192)
|.|.|+.++...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876544
No 46
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=8.3e-22 Score=134.45 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=80.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRT-GFLKGYALVEYDSYKEASAARDALNGTTILGQTV 130 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t-g~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l 130 (192)
+....+.++|||+|||+++++++|+++|+.|| |..+.++.++.+ |.++|||||+|.+.++|++|+ .|++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34445678999999999999999999999999 999999999887 999999999999999999999 899999999999
Q ss_pred EEEecccCCCC
Q psy15152 131 TVDWCFVKGPK 141 (192)
Q Consensus 131 ~v~~a~~~~~~ 141 (192)
.|.++.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876544
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=3.9e-22 Score=136.41 Aligned_cols=90 Identities=24% Similarity=0.358 Sum_probs=82.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCee---CCe
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTI---LGQ 128 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~---~g~ 128 (192)
+....+.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.||+..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 44456678999999999999999999999999999999999998999999999999999999999999999997 899
Q ss_pred EEEEEecccCCCC
Q psy15152 129 TVTVDWCFVKGPK 141 (192)
Q Consensus 129 ~l~v~~a~~~~~~ 141 (192)
.|.|.++.++...
T Consensus 87 ~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 87 PIQVKPADSESRG 99 (106)
T ss_dssp CCEEEECCCCSCC
T ss_pred eEEEEECCccccc
Confidence 9999999876543
No 48
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=3.7e-22 Score=131.09 Aligned_cols=81 Identities=30% Similarity=0.587 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|.||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45688999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred c
Q psy15152 136 F 136 (192)
Q Consensus 136 ~ 136 (192)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=4.6e-22 Score=138.31 Aligned_cols=81 Identities=20% Similarity=0.347 Sum_probs=75.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
..+|||+|||+++++++|+++|++||.|.+++|+.++ +.++|||||+|.+.++|++|++.|++..|.|+.|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4679999999999999999999999999999999995 55899999999999999999999999999999999999986
Q ss_pred CCC
Q psy15152 138 KGP 140 (192)
Q Consensus 138 ~~~ 140 (192)
+..
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 50
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.88 E-value=3.8e-22 Score=158.63 Aligned_cols=132 Identities=17% Similarity=0.257 Sum_probs=106.3
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcccC---CCC-----CCC--CCCCCCCCCcEEEEcCCCCCC-cHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE--IREYESMET---DVG-----DEE--PGPQRSVEGWILFVTGVHEEA-QED 73 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~~---~~~-----~~~--~~~~~~~~~~~l~V~nLp~~~-t~~ 73 (192)
+.++.+++|+.+++ ++|||||+|...+ ..+...++. .+. ... .........++|||+|||+++ +++
T Consensus 122 i~~~~i~~~~~~g~-~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~ 200 (284)
T 3smz_A 122 LERCFLVYSERTGQ-SKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVD 200 (284)
T ss_dssp EEEEEEEECTTTCC-EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHH
T ss_pred eeEEEEEeeCCCCc-cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHH
Confidence 56888999999995 9999999994333 223323322 111 011 112233567899999999995 999
Q ss_pred HHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCC
Q psy15152 74 DMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGP 140 (192)
Q Consensus 74 ~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~ 140 (192)
+|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.|+.++..
T Consensus 201 ~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 201 ALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 999999999999999999997 899999999999999999999999999999999999999987654
No 51
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=7.4e-22 Score=132.12 Aligned_cols=84 Identities=18% Similarity=0.316 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
....+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.||+..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 33455678999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred Eecc
Q psy15152 133 DWCF 136 (192)
Q Consensus 133 ~~a~ 136 (192)
.||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9984
No 52
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=9.5e-22 Score=136.97 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=79.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+.++|||+|||+++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|++|++.|+|..+.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345789999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy15152 136 FVKGPK 141 (192)
Q Consensus 136 ~~~~~~ 141 (192)
.+....
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 53
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=5.7e-22 Score=133.98 Aligned_cols=85 Identities=22% Similarity=0.378 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCee-EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE----
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIK-NLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT---- 129 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~-~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~---- 129 (192)
..+.++|||+|||+++++++|+++|++||.|. .+.++.++.+|.++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34568899999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEecccCC
Q psy15152 130 VTVDWCFVKG 139 (192)
Q Consensus 130 l~v~~a~~~~ 139 (192)
|+|.||.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997664
No 54
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=135.74 Aligned_cols=89 Identities=28% Similarity=0.463 Sum_probs=82.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCee--------EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCe
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIK--------NLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTT 124 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~ 124 (192)
....+.++|||+|||+++++++|+++|+.||.|. .+.++.++.+|.++|||||+|.+.++|++|++.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4456678999999999999999999999999998 69999998899999999999999999999999999999
Q ss_pred eCCeEEEEEecccCCCC
Q psy15152 125 ILGQTVTVDWCFVKGPK 141 (192)
Q Consensus 125 ~~g~~l~v~~a~~~~~~ 141 (192)
|.|+.|+|.++.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999876543
No 55
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=5.1e-22 Score=131.20 Aligned_cols=84 Identities=27% Similarity=0.424 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCC-cceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGF-LKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~-~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
...++|||+|||.++++++|+++|++||.|..+.++.++.++. ++|||||+|.+.++|++|++.|||..++|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3567899999999999999999999999999999999987766 899999999999999999999999999999999999
Q ss_pred cccCC
Q psy15152 135 CFVKG 139 (192)
Q Consensus 135 a~~~~ 139 (192)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 56
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=4.3e-22 Score=141.27 Aligned_cols=88 Identities=27% Similarity=0.485 Sum_probs=82.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
....+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCC
Q psy15152 133 DWCFVKGP 140 (192)
Q Consensus 133 ~~a~~~~~ 140 (192)
.|+.++.+
T Consensus 121 ~~a~~~~p 128 (129)
T 2kxn_B 121 DFSITKRP 128 (129)
T ss_dssp SCCSSSSC
T ss_pred EEecCCCC
Confidence 99987653
No 57
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.87 E-value=1.1e-22 Score=137.98 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=78.0
Q ss_pred CcEEEEcCCCC------CCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC-eEE
Q psy15152 58 GWILFVTGVHE------EAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG-QTV 130 (192)
Q Consensus 58 ~~~l~V~nLp~------~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g-~~l 130 (192)
+++|||+|||+ ++++++|+++|++||.|.++.++.++.||+++|||||+|.+.++|++|++.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57899999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEecccC
Q psy15152 131 TVDWCFVK 138 (192)
Q Consensus 131 ~v~~a~~~ 138 (192)
.|.+|.+.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 58
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=1.7e-21 Score=139.51 Aligned_cols=88 Identities=25% Similarity=0.342 Sum_probs=82.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
....++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccCCCCC
Q psy15152 135 CFVKGPKK 142 (192)
Q Consensus 135 a~~~~~~~ 142 (192)
+.++..+.
T Consensus 119 a~~~~~~~ 126 (139)
T 1u6f_A 119 AASGHQRP 126 (139)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 98775443
No 59
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.87 E-value=3.2e-22 Score=148.06 Aligned_cols=121 Identities=19% Similarity=0.246 Sum_probs=93.1
Q ss_pred EeeccCcCCCCCCccCCCCChhH-HHhhhcccC---CCC-----CCCC-CCCCCCCCcEEEEcCCCCCCcHHHHHHhhcc
Q psy15152 12 RLKEKARKKKGRGFGTETSTRNE-IREYESMET---DVG-----DEEP-GPQRSVEGWILFVTGVHEEAQEDDMHEKFSE 81 (192)
Q Consensus 12 ~~~d~~~~~k~rG~gfv~f~~~~-~~~~~~~~~---~~~-----~~~~-~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~ 81 (192)
+++|..+++ +||||||+|...+ ......++. .+. ...+ ........++|||+|||.++++++|+++|++
T Consensus 44 ~~~~~~~~~-~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~ 122 (175)
T 1fje_B 44 AVVDVRTGT-NRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED 122 (175)
T ss_dssp CCCEEEEET-TTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTT
T ss_pred EEEECCCCc-cccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 456777785 9999999993333 222222321 121 1111 1222345689999999999999999999999
Q ss_pred CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccC
Q psy15152 82 YGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVK 138 (192)
Q Consensus 82 ~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~ 138 (192)
||.|..+ ..+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.||.++
T Consensus 123 ~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 123 ALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9988765 458999999999999999999999999999999999999999875
No 60
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.87 E-value=9.7e-22 Score=135.22 Aligned_cols=86 Identities=27% Similarity=0.441 Sum_probs=80.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|+|..+.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecccCC
Q psy15152 134 WCFVKG 139 (192)
Q Consensus 134 ~a~~~~ 139 (192)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 997653
No 61
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=133.57 Aligned_cols=85 Identities=22% Similarity=0.354 Sum_probs=79.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhcc-CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCe-eCCeEEEEE
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSE-YGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTT-ILGQTVTVD 133 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~-~~g~~l~v~ 133 (192)
.+.++|||+|||+++++++|+++|++ ||.|..+.++.++ +|.++|||||+|.+.++|++|++.|++.. +.|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45678999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred ecccCCCC
Q psy15152 134 WCFVKGPK 141 (192)
Q Consensus 134 ~a~~~~~~ 141 (192)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99766533
No 62
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.87 E-value=1.4e-21 Score=130.31 Aligned_cols=85 Identities=21% Similarity=0.303 Sum_probs=78.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+.++|||+|||+++++++|+++|++||.|..+.+..+ +|.++|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999885 89999999999999999999999999999999999999
Q ss_pred ecccCCC
Q psy15152 134 WCFVKGP 140 (192)
Q Consensus 134 ~a~~~~~ 140 (192)
++.+...
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9987654
No 63
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5.7e-21 Score=129.99 Aligned_cols=89 Identities=20% Similarity=0.400 Sum_probs=80.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
+....+.++|||+|||+++++++|+++|+.||.|..+.++.++. .++|||||+|.+.++|++|++.|++..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44455678999999999999999999999999999999999863 3899999999999999999999999999999999
Q ss_pred EEecccCCCCC
Q psy15152 132 VDWCFVKGPKK 142 (192)
Q Consensus 132 v~~a~~~~~~~ 142 (192)
|.++.++....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cq3_A 87 VNNATARVMTN 97 (103)
T ss_dssp EEECCSSCCCC
T ss_pred EEEcccCCCCC
Confidence 99998775443
No 64
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.87 E-value=4.2e-22 Score=141.59 Aligned_cols=89 Identities=17% Similarity=0.321 Sum_probs=81.3
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeE--EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC----ee
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKN--LHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGT----TI 125 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~----~~ 125 (192)
+......++|||+|||+++++++|+++|++||.|.. |+|+.|+.+|+++|||||+|.+. +|++|++.|||. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344456789999999999999999999999999966 99999999999999999999999 999999999999 99
Q ss_pred CCeEEEEEecccCCCC
Q psy15152 126 LGQTVTVDWCFVKGPK 141 (192)
Q Consensus 126 ~g~~l~v~~a~~~~~~ 141 (192)
+|+.|.|.++.+....
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999876443
No 65
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=133.76 Aligned_cols=89 Identities=20% Similarity=0.338 Sum_probs=81.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
.....+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++. ++..|.|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 33445678999999999999999999999999999999999998999999999999999999999998 99999999999
Q ss_pred EEecccCCCC
Q psy15152 132 VDWCFVKGPK 141 (192)
Q Consensus 132 v~~a~~~~~~ 141 (192)
|.++.++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=1.8e-21 Score=128.87 Aligned_cols=81 Identities=19% Similarity=0.335 Sum_probs=77.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|+ .|++..+.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999999889999999999999999999999 8999999999999999976
Q ss_pred CC
Q psy15152 138 KG 139 (192)
Q Consensus 138 ~~ 139 (192)
..
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 67
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.1e-21 Score=129.53 Aligned_cols=87 Identities=25% Similarity=0.411 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
....+.++|||+|||+++++++|+++|++||.|..+.++.++. .++|||||+|.+.++|++|++.|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 3445678999999999999999999999999999999999853 36899999999999999999999999999999999
Q ss_pred EecccCCCC
Q psy15152 133 DWCFVKGPK 141 (192)
Q Consensus 133 ~~a~~~~~~ 141 (192)
.|+.++..+
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999876543
No 68
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=2.5e-21 Score=129.74 Aligned_cols=85 Identities=22% Similarity=0.336 Sum_probs=77.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
+....+.++|||+|||+++++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|++|++.||+..+.|+.|.
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 3444567899999999999999999999999999999999997 599999999999999999999999999999999999
Q ss_pred EEeccc
Q psy15152 132 VDWCFV 137 (192)
Q Consensus 132 v~~a~~ 137 (192)
|.++..
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999863
No 69
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.86 E-value=3.7e-21 Score=131.73 Aligned_cols=83 Identities=24% Similarity=0.384 Sum_probs=78.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
....+.++|||+|||+.+++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|++|++.|++..+.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344567899999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred Eecc
Q psy15152 133 DWCF 136 (192)
Q Consensus 133 ~~a~ 136 (192)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 70
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=3.9e-21 Score=126.84 Aligned_cols=81 Identities=16% Similarity=0.387 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ +++..+.|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34566889999999999999999999999999999999999899999999999999999999996 58889999999999
Q ss_pred ec
Q psy15152 134 WC 135 (192)
Q Consensus 134 ~a 135 (192)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 71
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=142.75 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYG--EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..++|||+|||+++++++|+++|+.|| .|.+++++.|+.+|+++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q psy15152 135 CFVK 138 (192)
Q Consensus 135 a~~~ 138 (192)
|.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 72
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=2.2e-21 Score=135.19 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=78.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecc
Q psy15152 134 WCF 136 (192)
Q Consensus 134 ~a~ 136 (192)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 73
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=2.7e-21 Score=130.36 Aligned_cols=83 Identities=23% Similarity=0.151 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 44688999999999999999999999999998888888889999999999999999999999999999999999999998
Q ss_pred ccC
Q psy15152 136 FVK 138 (192)
Q Consensus 136 ~~~ 138 (192)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 654
No 74
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.2e-21 Score=132.62 Aligned_cols=87 Identities=22% Similarity=0.299 Sum_probs=79.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHH---HhhccCCCeeEEEEeecCCCC---CcceEEEEEecCHHHHHHHHHHhCCCeeC
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMH---EKFSEYGEIKNLHLNLDRRTG---FLKGYALVEYDSYKEASAARDALNGTTIL 126 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~~~i~~~~~tg---~~~g~afV~f~~~~~a~~al~~l~~~~~~ 126 (192)
.+....++|||+|||+++++++|+ ++|++||.|..+.++.++.++ .++|||||+|.+.++|++|++.||+..|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 445567889999999999999999 999999999999999987654 56699999999999999999999999999
Q ss_pred CeEEEEEecccCC
Q psy15152 127 GQTVTVDWCFVKG 139 (192)
Q Consensus 127 g~~l~v~~a~~~~ 139 (192)
|+.|+|.||.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998775
No 75
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-20 Score=128.25 Aligned_cols=86 Identities=23% Similarity=0.341 Sum_probs=78.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++ ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34456789999999999999999999999999999999999899999999999999999999998 4789999999999
Q ss_pred ecccCCCC
Q psy15152 134 WCFVKGPK 141 (192)
Q Consensus 134 ~a~~~~~~ 141 (192)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99876543
No 76
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=6.8e-21 Score=139.06 Aligned_cols=87 Identities=26% Similarity=0.389 Sum_probs=81.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++|++.|++..|.|+.|.|.||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy15152 136 FVKGPKK 142 (192)
Q Consensus 136 ~~~~~~~ 142 (192)
.+.....
T Consensus 117 ~~~~~~~ 123 (156)
T 1h2v_Z 117 AGFKEGR 123 (156)
T ss_dssp SCCCTTC
T ss_pred CCCCCcC
Confidence 8765443
No 77
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-20 Score=129.78 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC-----e
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG-----Q 128 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g-----~ 128 (192)
.....++|||+|||+++++++|+++|++||.|..+.++.+ |||||+|.+.++|++|++.||+..|.| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3455789999999999999999999999999999999876 799999999999999999999999999 9
Q ss_pred EEEEEecccCCCCCCC
Q psy15152 129 TVTVDWCFVKGPKKVA 144 (192)
Q Consensus 129 ~l~v~~a~~~~~~~~~ 144 (192)
.|+|.+|.++.....+
T Consensus 84 ~i~V~~a~~~~~~~~r 99 (108)
T 1x4c_A 84 YIRVKVDGPRSPSYGR 99 (108)
T ss_dssp EEEEEESSCCSCCCCC
T ss_pred EEEEEeCCCCCCCCCC
Confidence 9999999887654443
No 78
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.7e-21 Score=132.20 Aligned_cols=86 Identities=23% Similarity=0.391 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCC-eeEEEEe-ecCCCCCcceEEEEEecCHHHHHHHHHHhC--CCeeCCeEE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGE-IKNLHLN-LDRRTGFLKGYALVEYDSYKEASAARDALN--GTTILGQTV 130 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~~~i~-~~~~tg~~~g~afV~f~~~~~a~~al~~l~--~~~~~g~~l 130 (192)
+.+.++|||+|||+++++++|+++|+.||. |..+.++ .++.+|.++|||||+|.+.++|++|++.|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 888889999999999999999999999996 589999999
Q ss_pred EEEecccCCC
Q psy15152 131 TVDWCFVKGP 140 (192)
Q Consensus 131 ~v~~a~~~~~ 140 (192)
.|.||.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 79
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.3e-22 Score=134.27 Aligned_cols=84 Identities=32% Similarity=0.462 Sum_probs=79.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35789999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred cCCC
Q psy15152 137 VKGP 140 (192)
Q Consensus 137 ~~~~ 140 (192)
+...
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 6643
No 80
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.2e-21 Score=129.18 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 56 VEGWILFVTGVHEEAQEDDMH----EKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
.+.++|||+|||+++++++|+ ++|++||.|.++.++.++.+ +|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 346789999999999999999 99999999999999999755 88999999999999999999999999999999
Q ss_pred EEecccCC
Q psy15152 132 VDWCFVKG 139 (192)
Q Consensus 132 v~~a~~~~ 139 (192)
|.+|.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997664
No 81
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.85 E-value=1.7e-21 Score=155.42 Aligned_cols=130 Identities=17% Similarity=0.240 Sum_probs=95.5
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcccC---CC-----CCCCCCC------CCCCCCcEEEEcCCCCC
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE--IREYESMET---DV-----GDEEPGP------QRSVEGWILFVTGVHEE 69 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~~---~~-----~~~~~~~------~~~~~~~~l~V~nLp~~ 69 (192)
.+.+|.+++|+. + +++|||||+|...+ ..+...++. .+ ....+.. ......++|||+|||++
T Consensus 144 ~i~~v~i~~~~~-~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~ 221 (292)
T 2ghp_A 144 VALSIRLPSLRF-N-TSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTE 221 (292)
T ss_dssp CCCEEECC---------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTT
T ss_pred CeEEEEEEeCCC-C-CcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcc
Confidence 456788888887 5 39999999994333 222332322 11 1111111 22345689999999999
Q ss_pred -CcHHHHHHhhccCCCeeEEEEeecCC-CCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccC
Q psy15152 70 -AQEDDMHEKFSEYGEIKNLHLNLDRR-TGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVK 138 (192)
Q Consensus 70 -~t~~~L~~~F~~~G~i~~~~i~~~~~-tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~ 138 (192)
+++++|+++|+.||.|..+.++.+.. ||.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.||.++
T Consensus 222 ~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 222 LLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp TCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred cCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999999999875 5999999999999999999999 99999999999999999876
No 82
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=9.4e-22 Score=140.55 Aligned_cols=89 Identities=22% Similarity=0.358 Sum_probs=82.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.|++..|.|+.|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456889999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecccCCCCC
Q psy15152 134 WCFVKGPKK 142 (192)
Q Consensus 134 ~a~~~~~~~ 142 (192)
|+.+..+..
T Consensus 123 ~a~~~~~~~ 131 (135)
T 2lea_A 123 MARYGRPPD 131 (135)
T ss_dssp ECCCCCCCT
T ss_pred ECCCCCCCc
Confidence 998765443
No 83
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=130.26 Aligned_cols=85 Identities=14% Similarity=0.273 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCee-------
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTI------- 125 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~------- 125 (192)
....+.++|||+|||+++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|++|++.|||..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344567899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred -CCeEEEEEecccC
Q psy15152 126 -LGQTVTVDWCFVK 138 (192)
Q Consensus 126 -~g~~l~v~~a~~~ 138 (192)
.+++|.|.||.++
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999999865
No 84
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=125.61 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
....++|||+|||+++++++|+++|+.| .|..+.++.+ .+|+++|||||+|.+.++|++|++ ||+..+.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456889999999999999999999999 9999999999 699999999999999999999999 999999999999999
Q ss_pred cccCC
Q psy15152 135 CFVKG 139 (192)
Q Consensus 135 a~~~~ 139 (192)
+.+++
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97764
No 85
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.85 E-value=5.4e-21 Score=134.37 Aligned_cols=82 Identities=27% Similarity=0.394 Sum_probs=78.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
.++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|++|+ .|+|..|+|+.|.|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 578999999999999999999999999999999999889999999999999999999999 7999999999999999986
Q ss_pred CCC
Q psy15152 138 KGP 140 (192)
Q Consensus 138 ~~~ 140 (192)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 86
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.9e-21 Score=132.63 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
....+|||+|||+++|+++|+++|++||.|.++.++.++. |.++|||||+|.+.++|++|+. +++..+.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4457899999999999999999999999999999999986 9999999999999999999999 8999999999999988
Q ss_pred cc
Q psy15152 136 FV 137 (192)
Q Consensus 136 ~~ 137 (192)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 87
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=4.8e-21 Score=131.92 Aligned_cols=85 Identities=16% Similarity=0.307 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.+ +..+.|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345688999999999999999999999999999999999989999999999999999999999975 5899999999999
Q ss_pred cccCCC
Q psy15152 135 CFVKGP 140 (192)
Q Consensus 135 a~~~~~ 140 (192)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987654
No 88
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.85 E-value=2.8e-21 Score=129.53 Aligned_cols=81 Identities=22% Similarity=0.167 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
..++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.||+..+.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred c
Q psy15152 137 V 137 (192)
Q Consensus 137 ~ 137 (192)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 89
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=127.18 Aligned_cols=84 Identities=25% Similarity=0.389 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
....+.++|||+|||+++++++|+++|++||.| .++.+ .+|+++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345567899999999999999999999999987 56666 58999999999999999999999999999999999999
Q ss_pred EecccCCC
Q psy15152 133 DWCFVKGP 140 (192)
Q Consensus 133 ~~a~~~~~ 140 (192)
.|+.++..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99987643
No 90
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5.8e-21 Score=129.84 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=73.5
Q ss_pred CCCCCCCCCcEEEEcCCCC-CCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC--eeC
Q psy15152 50 PGPQRSVEGWILFVTGVHE-EAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGT--TIL 126 (192)
Q Consensus 50 ~~~~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~--~~~ 126 (192)
.......++++|||+|||+ ++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|++. .|.
T Consensus 7 ~~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 7 GQKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 3444455778999999999 9999999999999999999999876 479999999999999999999864 599
Q ss_pred CeEEEEEecccC
Q psy15152 127 GQTVTVDWCFVK 138 (192)
Q Consensus 127 g~~l~v~~a~~~ 138 (192)
|++|.|.||...
T Consensus 81 Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 81 GKPVRVHLSQKY 92 (102)
T ss_dssp TEECEEEEECCC
T ss_pred CcEEEEEECCCC
Confidence 999999999754
No 91
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1e-21 Score=129.10 Aligned_cols=81 Identities=25% Similarity=0.337 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45678999999999999999999999999999999999989999999999999999999999999999999999988765
Q ss_pred c
Q psy15152 136 F 136 (192)
Q Consensus 136 ~ 136 (192)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 92
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=128.38 Aligned_cols=84 Identities=23% Similarity=0.302 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
.....++|||+|||+++++++|+++|++||. ..+.|+.++ +|+++|||||+|.+.++|++||+ +|+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3455689999999999999999999999994 599999998 99999999999999999999995 79999999999999
Q ss_pred ecccCCC
Q psy15152 134 WCFVKGP 140 (192)
Q Consensus 134 ~a~~~~~ 140 (192)
++.+...
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 9876543
No 93
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.85 E-value=1.5e-21 Score=125.28 Aligned_cols=75 Identities=19% Similarity=0.379 Sum_probs=72.4
Q ss_pred EEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 60 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ |++..+.|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999998 9999999999999986
No 94
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.3e-20 Score=128.32 Aligned_cols=85 Identities=18% Similarity=0.285 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
....+.++|||+|||+++++++|+++|++||.|..+.+..+ +.++|||||+|.+.++|++|++.||+..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999998554 568999999999999999999999999999999999
Q ss_pred EecccCCC
Q psy15152 133 DWCFVKGP 140 (192)
Q Consensus 133 ~~a~~~~~ 140 (192)
.|+.+...
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99987643
No 95
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.4e-20 Score=125.88 Aligned_cols=86 Identities=35% Similarity=0.575 Sum_probs=77.6
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
.....+.++|||+|||+++++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|++|++.||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34455678899999999999999999999874 678888888999999999999999999999999999999999999
Q ss_pred EEecccCCC
Q psy15152 132 VDWCFVKGP 140 (192)
Q Consensus 132 v~~a~~~~~ 140 (192)
|.|+.++..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999987654
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-21 Score=132.02 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecC-CCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDR-RTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~-~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
......++|||+|||+++++++|+++|+.|| |.++.++.++ .+|+++|||||+|.+.++|++|+ .|+|..+.|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3345678999999999999999999999999 9999999998 58999999999999999999999 8999999999999
Q ss_pred EEecccCC
Q psy15152 132 VDWCFVKG 139 (192)
Q Consensus 132 v~~a~~~~ 139 (192)
|.++.++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99997653
No 97
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=2.3e-20 Score=131.25 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..++++|||+|||.++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|++|++.|+|..+.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3556899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cccCC
Q psy15152 135 CFVKG 139 (192)
Q Consensus 135 a~~~~ 139 (192)
|.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 97654
No 98
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.5e-21 Score=131.64 Aligned_cols=84 Identities=20% Similarity=0.346 Sum_probs=78.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++. ++..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 348999999999999999999999999999999999998999999999999999999999997 9999999999999998
Q ss_pred cCCCC
Q psy15152 137 VKGPK 141 (192)
Q Consensus 137 ~~~~~ 141 (192)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 77543
No 99
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.1e-21 Score=130.45 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC--CeeCCeEEEE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNG--TTILGQTVTV 132 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~--~~~~g~~l~v 132 (192)
..+.++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|++ ..+.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345688999999999999999999999999999999865 68999999999999999998864 6899999999
Q ss_pred EecccCCCC
Q psy15152 133 DWCFVKGPK 141 (192)
Q Consensus 133 ~~a~~~~~~ 141 (192)
.||.++...
T Consensus 87 ~~A~~~~~~ 95 (105)
T 1sjq_A 87 QFSNHKELK 95 (105)
T ss_dssp CCCSSSSCC
T ss_pred EEcCCCCCC
Confidence 999876544
No 100
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=134.67 Aligned_cols=82 Identities=29% Similarity=0.596 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ec
Q psy15152 134 WC 135 (192)
Q Consensus 134 ~a 135 (192)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 101
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=127.58 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeE-EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKN-LHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
.....++|||+|||+++++++|+++|+.||.|.. +.++.+ .+|+++|||||+|.+.++|++|++. ++..++|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3455689999999999999999999999999987 889888 6999999999999999999999997 999999999999
Q ss_pred EecccCC
Q psy15152 133 DWCFVKG 139 (192)
Q Consensus 133 ~~a~~~~ 139 (192)
.++.+..
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9986543
No 102
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.2e-20 Score=125.02 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh--CCCeeCCeEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL--NGTTILGQTV 130 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l--~~~~~~g~~l 130 (192)
....++++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.| ++..+.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 33456789999999999999999999999999999988765 689999999999999999987 4678999999
Q ss_pred EEEecccCCCC
Q psy15152 131 TVDWCFVKGPK 141 (192)
Q Consensus 131 ~v~~a~~~~~~ 141 (192)
.|.|+.++...
T Consensus 84 ~V~~a~~~~~~ 94 (101)
T 2cq1_A 84 YIQYSNHKELK 94 (101)
T ss_dssp EEEECSCSSCC
T ss_pred EEEEcCcccCc
Confidence 99999876544
No 103
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.5e-21 Score=132.46 Aligned_cols=82 Identities=22% Similarity=0.372 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
..++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|+ .||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3479999999999999999999999999999999999989999999999999999999999 899999999999999998
Q ss_pred cCC
Q psy15152 137 VKG 139 (192)
Q Consensus 137 ~~~ 139 (192)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 754
No 104
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.84 E-value=1.3e-21 Score=129.91 Aligned_cols=80 Identities=29% Similarity=0.407 Sum_probs=74.2
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccC
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVK 138 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~ 138 (192)
++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.+ |++|+..|||..+.|+.|.|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999989999999999999999 99999999999999999999999876
Q ss_pred C
Q psy15152 139 G 139 (192)
Q Consensus 139 ~ 139 (192)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 105
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=9.9e-21 Score=137.33 Aligned_cols=82 Identities=20% Similarity=0.398 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
......++|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999877 4899999999999999999999999999999999
Q ss_pred EecccCC
Q psy15152 133 DWCFVKG 139 (192)
Q Consensus 133 ~~a~~~~ 139 (192)
.|+.++.
T Consensus 143 ~~a~~~~ 149 (150)
T 2i2y_A 143 ELSNGEK 149 (150)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9997763
No 106
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=129.22 Aligned_cols=83 Identities=20% Similarity=0.426 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+.++|||+|||.++++++|+++|++||.|..+.+..++ +.++|||||+|.+.++|++|++.|+|..++|+.|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999985 4589999999999999999999999999999999999
Q ss_pred ecccC
Q psy15152 134 WCFVK 138 (192)
Q Consensus 134 ~a~~~ 138 (192)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99765
No 107
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3e-21 Score=124.43 Aligned_cols=76 Identities=16% Similarity=0.290 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.++ ..+.|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 469999999999999999999999999999999999899999999999999999999999988 9999999999987
No 108
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=126.61 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCe--eCCeEEEE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTT--ILGQTVTV 132 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~--~~g~~l~v 132 (192)
..++.+|||+|||+++++++|+++|++||.|.++.++.+ ||||||+|.+.++|.+|++.|++.. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345678999999999999999999999999999998753 6899999999999999999999875 78999999
Q ss_pred EecccC
Q psy15152 133 DWCFVK 138 (192)
Q Consensus 133 ~~a~~~ 138 (192)
.|+.++
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999765
No 109
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=133.46 Aligned_cols=83 Identities=14% Similarity=0.282 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHH----HhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMH----EKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT 129 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~ 129 (192)
...++++|||+|||+.+++++|+ ++|++||.|.+|.+. .+|+++|||||+|.+.++|+.|++.|||..+.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34557899999999999999876 699999999998774 36889999999999999999999999999999999
Q ss_pred EEEEecccCC
Q psy15152 130 VTVDWCFVKG 139 (192)
Q Consensus 130 l~v~~a~~~~ 139 (192)
|+|.||.++.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999997654
No 110
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.8e-20 Score=124.59 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=74.8
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC--CeE
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL--GQT 129 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~--g~~ 129 (192)
.....+.++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.||+..+. |+.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 344556688999999999999999999999999999988754 689999999999999999999999999 999
Q ss_pred EEEEecccCCC
Q psy15152 130 VTVDWCFVKGP 140 (192)
Q Consensus 130 l~v~~a~~~~~ 140 (192)
|.|.|+.+++.
T Consensus 85 l~V~~a~~~~~ 95 (97)
T 1why_A 85 LRVDFAKSGPS 95 (97)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987653
No 111
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=128.21 Aligned_cols=82 Identities=26% Similarity=0.310 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCC------cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCe
Q psy15152 55 SVEGWILFVTGVHEEA------QEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQ 128 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~------t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~ 128 (192)
...+++|||+|||+.+ ++++|+++|++||.|..+.++ +.+|.++|||||+|.+.++|++|++.|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446889999999999 789999999999999999988 35899999999999999999999999999999998
Q ss_pred -EEEEEecccC
Q psy15152 129 -TVTVDWCFVK 138 (192)
Q Consensus 129 -~l~v~~a~~~ 138 (192)
.|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998654
No 112
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.8e-20 Score=125.45 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC--eeCCeEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGT--TILGQTV 130 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~--~~~g~~l 130 (192)
....++++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|++. .+.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34456789999999999999999999999999999988754 689999999999999999988764 5999999
Q ss_pred EEEecccCCCC
Q psy15152 131 TVDWCFVKGPK 141 (192)
Q Consensus 131 ~v~~a~~~~~~ 141 (192)
.|.|+..+...
T Consensus 84 ~V~~a~~~~~~ 94 (104)
T 1wex_A 84 FFNYSTSKRIT 94 (104)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCcccc
Confidence 99999866443
No 113
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.4e-20 Score=121.79 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..+.++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3456889999999999999999999999999999986 57999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy15152 135 CFVKGPK 141 (192)
Q Consensus 135 a~~~~~~ 141 (192)
+.++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 114
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.83 E-value=3.1e-20 Score=147.55 Aligned_cols=118 Identities=21% Similarity=0.265 Sum_probs=95.7
Q ss_pred CCCCccCCCCChhHH--HhhhcccCC---CCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCC
Q psy15152 21 KGRGFGTETSTRNEI--REYESMETD---VGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRR 95 (192)
Q Consensus 21 k~rG~gfv~f~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~ 95 (192)
+++|||||+|...+. .+...++.. +.... .......++|||+|||+++++++|+++|+.||.|..+.++.++.
T Consensus 55 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~--v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 132 (284)
T 3smz_A 55 KYKGTAFVTLLNGEQAEAAINAFHQSRLRERELS--VQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER 132 (284)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECE--EEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred cCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEE--EEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC
Confidence 489999999944333 333333222 21111 11234567899999999999999999999999999999999988
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCC
Q psy15152 96 TGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGP 140 (192)
Q Consensus 96 tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~ 140 (192)
+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+...
T Consensus 133 ~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 133 TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999999999999999999999999999987643
No 115
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.8e-20 Score=129.00 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC--CeeCCeEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNG--TTILGQTVT 131 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~--~~~~g~~l~ 131 (192)
...++++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|++ ..+.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3445788999999999999999999999999999999876 68999999999999999998874 689999999
Q ss_pred EEecccCCCCC
Q psy15152 132 VDWCFVKGPKK 142 (192)
Q Consensus 132 v~~a~~~~~~~ 142 (192)
|.||.++..+.
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998765443
No 116
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.9e-20 Score=122.66 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=69.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
.+.-|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|++|++.||+..+.|+.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 456699999999999999999999999999999865 48999999999999999999999999999999999984
No 117
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=130.39 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCe-eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEI-KNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
..+.++|||+|||+++++++|+++|+.||.| ..+.|+.++ +|+++|||||+|.+.++|++|++. |+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456889999999999999999999999999 899999998 999999999999999999999987 9999999999999
Q ss_pred ecccCC
Q psy15152 134 WCFVKG 139 (192)
Q Consensus 134 ~a~~~~ 139 (192)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997664
No 118
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=8.4e-20 Score=124.26 Aligned_cols=81 Identities=21% Similarity=0.434 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+.++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|++..|.|+.|.|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456789999999999999999999999999999886 459999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q psy15152 136 FVKGPKKVA 144 (192)
Q Consensus 136 ~~~~~~~~~ 144 (192)
.++......
T Consensus 81 ~~~~~~~~~ 89 (103)
T 2dgu_A 81 KPPDQKRKE 89 (103)
T ss_dssp CCCCCCCCC
T ss_pred CCCcccchh
Confidence 877654433
No 119
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.9e-21 Score=131.46 Aligned_cols=87 Identities=18% Similarity=0.334 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..+.++|||+|||+++++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|++|++.|++..+.|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34568999999999999999999999999984433322223789999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy15152 135 CFVKGPK 141 (192)
Q Consensus 135 a~~~~~~ 141 (192)
+.++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876544
No 120
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.83 E-value=3e-20 Score=129.70 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGE---IKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
..+.++|||+|||+++++++|+++|+.||. |..++++.++. |+++|||||+|.+.++|++|++ ||+..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345688999999999999999999999999 89999999985 9999999999999999999999 999999999999
Q ss_pred EEecccCC
Q psy15152 132 VDWCFVKG 139 (192)
Q Consensus 132 v~~a~~~~ 139 (192)
|.++..+.
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99986543
No 121
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=122.94 Aligned_cols=85 Identities=20% Similarity=0.411 Sum_probs=76.0
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy15152 50 PGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT 129 (192)
Q Consensus 50 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~ 129 (192)
+......+.++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.|++..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 7 GGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 33444556789999999999999999999999999999998755 689999999999999999999999999999
Q ss_pred EEEEecccCCC
Q psy15152 130 VTVDWCFVKGP 140 (192)
Q Consensus 130 l~v~~a~~~~~ 140 (192)
|.|.|+.++..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpj_A 81 LRVRFACHSAS 91 (99)
T ss_dssp CEEEESSCCSC
T ss_pred EEEEEcCCCCC
Confidence 99999987643
No 122
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.82 E-value=2e-20 Score=133.60 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGE---IKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
..+.++|||+|||+++|+++|+++|+.||. |..+.++.|+. |+++|||||+|.+.++|++|++ ||+..|+|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345689999999999999999999999999 88999999985 9999999999999999999999 999999999999
Q ss_pred EEecccC
Q psy15152 132 VDWCFVK 138 (192)
Q Consensus 132 v~~a~~~ 138 (192)
|.++.++
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998654
No 123
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-20 Score=132.57 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..+.++|||+|||+++++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|++||+ ||+..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999886666766799999999999999999999999 999999999999999
Q ss_pred cccC
Q psy15152 135 CFVK 138 (192)
Q Consensus 135 a~~~ 138 (192)
+.++
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9754
No 124
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.82 E-value=2.1e-20 Score=149.12 Aligned_cols=128 Identities=12% Similarity=0.080 Sum_probs=95.0
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH-HHhhhcccCCCCCCCCC--CCCCCCCcEEEEcCCCCCCcHHHHHHhhccC
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE-IREYESMETDVGDEEPG--PQRSVEGWILFVTGVHEEAQEDDMHEKFSEY 82 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~ 82 (192)
.+.+|.+++|+.+ ++|||||+|...+ +.....+ ++...... .......++|||+|||+++++++|+++|+.|
T Consensus 67 ~i~~v~i~~~~~~---~~g~afV~f~~~~~A~~A~~~--~~~~~~g~~i~v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~ 141 (292)
T 2ghp_A 67 PIIHVDVADSLKK---NFRFARIEFARYDGALAAITK--THKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDI 141 (292)
T ss_dssp CEEEEEEEECTTS---SSEEEEEEESSHHHHHHHHTT--TTCEETTEECEEEECCSCEEEEECCCTTCCHHHHHHHHHHT
T ss_pred CeEEEEEEECCCC---CcEEEEEEECCHHHHHHHHHh--CCcEeCCcEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHh
Confidence 3568888888753 5799999994333 2222222 22111111 1122356889999999999999999999999
Q ss_pred C-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCC
Q psy15152 83 G-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKG 139 (192)
Q Consensus 83 G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~ 139 (192)
| .|..+.++.++ .|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+..
T Consensus 142 G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 142 NVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp TCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred CCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 9 99999999987 48899999999999999999999999999999999999998654
No 125
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.3e-20 Score=122.97 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=73.1
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
......++|||+|||+++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|++|++.|||..+.|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445578999999999999999999999999996 666644 57899999999999999999999999999999999
Q ss_pred EecccCC
Q psy15152 133 DWCFVKG 139 (192)
Q Consensus 133 ~~a~~~~ 139 (192)
.++.++.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9998764
No 126
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=2.2e-20 Score=144.66 Aligned_cols=81 Identities=22% Similarity=0.276 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCC--CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYG--EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..++|||+|||+++++++|+++|+.|| .|.+|+|+.|+.+|+++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy15152 135 CFV 137 (192)
Q Consensus 135 a~~ 137 (192)
|.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 127
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=125.50 Aligned_cols=78 Identities=23% Similarity=0.438 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccC
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVK 138 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~ 138 (192)
++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++.|++..+.|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999877 5899999999999999999999999999999999999877
Q ss_pred CCC
Q psy15152 139 GPK 141 (192)
Q Consensus 139 ~~~ 141 (192)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 128
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-21 Score=130.76 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
....++|||+|||+++++++|+++|+.||.|.. .++.++.+|.++|||||+|.+.++|++|++ |++..+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999999888 677777789999999999999999999998 999999999999999
Q ss_pred cccCCC
Q psy15152 135 CFVKGP 140 (192)
Q Consensus 135 a~~~~~ 140 (192)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987643
No 129
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=7e-22 Score=137.45 Aligned_cols=87 Identities=30% Similarity=0.453 Sum_probs=80.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeE--------EEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKN--------LHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL 126 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~ 126 (192)
..+.++|||+|||+++++++|+++|++||.|.. +.++.++.+|.++|||||+|.+.++|++|++.||+..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345678999999999999999999999999998 899999889999999999999999999999999999999
Q ss_pred CeEEEEEecccCCCC
Q psy15152 127 GQTVTVDWCFVKGPK 141 (192)
Q Consensus 127 g~~l~v~~a~~~~~~ 141 (192)
|+.|.|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 130
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.6e-19 Score=119.29 Aligned_cols=80 Identities=21% Similarity=0.337 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
....+.++|||+|||+++++++|+++|++||.|..+.++ ++||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 344567899999999999999999999999999999986 349999999999999999999999999999999
Q ss_pred EecccCCC
Q psy15152 133 DWCFVKGP 140 (192)
Q Consensus 133 ~~a~~~~~ 140 (192)
.++.++..
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99987643
No 131
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=124.91 Aligned_cols=80 Identities=25% Similarity=0.449 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
...++|||+|||.++++++|+++|+.||.|..+.++.+ +|||||+|.+.++|++|++.|+|..+.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45678999999999999999999999999999999876 689999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy15152 136 FVKGPK 141 (192)
Q Consensus 136 ~~~~~~ 141 (192)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 876543
No 132
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=5.4e-20 Score=123.50 Aligned_cols=83 Identities=24% Similarity=0.345 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+.++|||+|||+++++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|++|++.|+|..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456899999999999999999999999988766 2478999999999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy15152 134 WCFVKGPK 141 (192)
Q Consensus 134 ~a~~~~~~ 141 (192)
++.++...
T Consensus 87 ~a~~~~~~ 94 (96)
T 1fjc_A 87 YTGEKGGT 94 (96)
T ss_dssp ECSSSCCC
T ss_pred EcCCCCCC
Confidence 99876543
No 133
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.2e-20 Score=126.69 Aligned_cols=80 Identities=23% Similarity=0.259 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+..+|||+|||+++++++|+++|+.| .|.++.|+.|+ +|+++|||||+|.+.++|++|+ .||+..|+|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345789999999999999999999999 89999999997 5999999999999999999999 68999999999999888
Q ss_pred ccC
Q psy15152 136 FVK 138 (192)
Q Consensus 136 ~~~ 138 (192)
.+.
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 643
No 134
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-20 Score=122.03 Aligned_cols=73 Identities=29% Similarity=0.408 Sum_probs=67.9
Q ss_pred CcEEEEcCCCCCC------cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCe-EE
Q psy15152 58 GWILFVTGVHEEA------QEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQ-TV 130 (192)
Q Consensus 58 ~~~l~V~nLp~~~------t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~-~l 130 (192)
+++|||+|||..+ ++++|+++|++||.|..+.++ +.+|+++|||||+|.+.++|++|++.|||..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 35899999999999999999999999999999999 88
Q ss_pred EE
Q psy15152 131 TV 132 (192)
Q Consensus 131 ~v 132 (192)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 135
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=4.6e-20 Score=127.31 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYG-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
..++|||+|||+++++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|++|++.|||..+.|+.|.|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 457899999999999999999999999 899998753 347899999999999999999999999999999999998
Q ss_pred ccCC
Q psy15152 136 FVKG 139 (192)
Q Consensus 136 ~~~~ 139 (192)
...+
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7543
No 136
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.81 E-value=1e-19 Score=144.39 Aligned_cols=75 Identities=32% Similarity=0.471 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEec
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL-GQTVTVDWC 135 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~-g~~l~v~~a 135 (192)
+.++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|++|++.|||..+. |+.|+|.||
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 46889999999999999999999999999999998664 689999999999999999999999999 999999998
Q ss_pred c
Q psy15152 136 F 136 (192)
Q Consensus 136 ~ 136 (192)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 5
No 137
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-19 Score=119.54 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=72.7
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHhhccC--CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy15152 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEY--GEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT 129 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~ 129 (192)
.....+.++|||+|||+++++++|+++|++| |.|..+.+. +|||||+|.+.++|++|++.||+..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3444567899999999999999999999999 899988764 579999999999999999999999999999
Q ss_pred EEEEecccCCC
Q psy15152 130 VTVDWCFVKGP 140 (192)
Q Consensus 130 l~v~~a~~~~~ 140 (192)
|.|.|+.++..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987653
No 138
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=2.7e-19 Score=123.17 Aligned_cols=76 Identities=26% Similarity=0.423 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 56 VEGWILFVTGVHEE-AQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 56 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
...++|||+|||++ +++++|+++|++||.|..+.+ ++|||||+|.+.++|++|++.|++..+.|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34579999999999 999999999999999999988 478999999999999999999999999999999999
Q ss_pred cccCC
Q psy15152 135 CFVKG 139 (192)
Q Consensus 135 a~~~~ 139 (192)
+.+..
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97544
No 139
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=3.3e-20 Score=124.72 Aligned_cols=82 Identities=15% Similarity=0.383 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMH----EKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTV 130 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l 130 (192)
..++++|||+|||.++++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467899999999999999999 9999999999998863 57889999999999999999999999999999999
Q ss_pred EEEecccCC
Q psy15152 131 TVDWCFVKG 139 (192)
Q Consensus 131 ~v~~a~~~~ 139 (192)
.|.|+.++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998764
No 140
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=125.44 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC--CeeCCeEEE
Q psy15152 55 SVEGWILFVTGVHEE-AQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNG--TTILGQTVT 131 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~--~~~~g~~l~ 131 (192)
..++++|||+|||++ +++++|+++|++||.|.++.++.. +|||||+|.+.++|++|++.|++ ..+.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 999999999999999999998743 78999999999999999998864 569999999
Q ss_pred EEecccCCC
Q psy15152 132 VDWCFVKGP 140 (192)
Q Consensus 132 v~~a~~~~~ 140 (192)
|.||..+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999976543
No 141
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=118.22 Aligned_cols=78 Identities=21% Similarity=0.413 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHh-CCCeeCCeEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL-NGTTILGQTVT 131 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l-~~~~~~g~~l~ 131 (192)
....+.++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.| ++..+.|+.|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 33455678999999999999999999999999999999865 689999999999999999999 99999999999
Q ss_pred EEecc
Q psy15152 132 VDWCF 136 (192)
Q Consensus 132 v~~a~ 136 (192)
|+||+
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 142
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.9e-20 Score=121.79 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCC-eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC-CeeCCeEEEEE
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGE-IKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNG-TTILGQTVTVD 133 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~-~~~~g~~l~v~ 133 (192)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||+ ..+.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34578999999999999999999999999 5555542 378999999999999999999999 99999999999
Q ss_pred ecccCCCC
Q psy15152 134 WCFVKGPK 141 (192)
Q Consensus 134 ~a~~~~~~ 141 (192)
|+.++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99876543
No 143
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=1.1e-20 Score=121.11 Aligned_cols=75 Identities=16% Similarity=0.400 Sum_probs=71.8
Q ss_pred EEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 60 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++. ++..+.|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999998999999999999999999999985 899999999999875
No 144
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.5e-19 Score=118.89 Aligned_cols=85 Identities=22% Similarity=0.318 Sum_probs=74.1
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCe
Q psy15152 49 EPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQ 128 (192)
Q Consensus 49 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~ 128 (192)
.+......+.++|||+|| ++++++|+++|++||.|..+.+. .++|||||+|.+.++|++|++.|++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 6 SGERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp SSCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 344444556789999996 89999999999999999999884 4578999999999999999999999999999
Q ss_pred EEEEEecccCCCC
Q psy15152 129 TVTVDWCFVKGPK 141 (192)
Q Consensus 129 ~l~v~~a~~~~~~ 141 (192)
.|.|.|+.++...
T Consensus 78 ~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 78 QLKVNIARKQPML 90 (97)
T ss_dssp EEEEECCSSCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 145
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.81 E-value=1.8e-19 Score=123.85 Aligned_cols=78 Identities=23% Similarity=0.452 Sum_probs=72.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..+.++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|+|..+.|+.|.|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4556899999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred cccCCC
Q psy15152 135 CFVKGP 140 (192)
Q Consensus 135 a~~~~~ 140 (192)
+.+...
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987653
No 146
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.81 E-value=4.9e-20 Score=125.13 Aligned_cols=81 Identities=22% Similarity=0.420 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
...++|||+|||+++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|++|++ ++..+.|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345789999999999999999999999999999999998 99999999999999999999998 999999999999999
Q ss_pred ccCC
Q psy15152 136 FVKG 139 (192)
Q Consensus 136 ~~~~ 139 (192)
.++.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 8764
No 147
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=119.25 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
...++|||+|||+++++++|+++|+.||.|.+| +.++.+|. ||||+|.+.++|++|++ |++..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345789999999999999999999999999987 66666665 99999999999999999 9999999999999988
Q ss_pred ccCC
Q psy15152 136 FVKG 139 (192)
Q Consensus 136 ~~~~ 139 (192)
.++.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6554
No 148
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=2.6e-19 Score=136.93 Aligned_cols=83 Identities=29% Similarity=0.359 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.|+.+|+++|||||+|.+.++|++|++.+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccC
Q psy15152 136 FVK 138 (192)
Q Consensus 136 ~~~ 138 (192)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 149
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=127.96 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCC---eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGE---IKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
....++|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|++|++ |++..++|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345688999999999999999999999988 89999999986 9999999999999999999999 999999999999
Q ss_pred EEecccC
Q psy15152 132 VDWCFVK 138 (192)
Q Consensus 132 v~~a~~~ 138 (192)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998754
No 150
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=3.4e-19 Score=120.12 Aligned_cols=77 Identities=16% Similarity=0.329 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcCCCC-CCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 54 RSVEGWILFVTGVHE-EAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
...++++|||+|||+ ++++++|+++|+.||.|..+.+. +|||||+|.+.++|++|++.|+|..+.|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999998 99999999999999999999882 789999999999999999999999999999999
Q ss_pred EecccC
Q psy15152 133 DWCFVK 138 (192)
Q Consensus 133 ~~a~~~ 138 (192)
.++.++
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999765
No 151
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.1e-19 Score=123.13 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
..++|||+|||.++++++|+++|+.||.|.++.+. .++|||||+|.+.++|++|++.|||..++|+.|+|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 35789999999999999999999999999999987 347999999999999999999999999999999999987
Q ss_pred cC
Q psy15152 137 VK 138 (192)
Q Consensus 137 ~~ 138 (192)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 152
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-19 Score=121.89 Aligned_cols=79 Identities=14% Similarity=0.315 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 55 SVEGWILFVTGVHE-EAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 55 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
..+.++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999883 6899999999999999999999999999999999
Q ss_pred ecccCCCC
Q psy15152 134 WCFVKGPK 141 (192)
Q Consensus 134 ~a~~~~~~ 141 (192)
++.++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 153
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=118.34 Aligned_cols=78 Identities=24% Similarity=0.417 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..+.++|||+|||+++++++|+++|++||.|..+.++ ++||||+|.+.++|++|++.||+..+.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3456789999999999999999999999999999986 34999999999999999999999999999999999
Q ss_pred cccCCC
Q psy15152 135 CFVKGP 140 (192)
Q Consensus 135 a~~~~~ 140 (192)
+.+...
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987643
No 154
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.80 E-value=5.7e-19 Score=128.96 Aligned_cols=82 Identities=27% Similarity=0.385 Sum_probs=78.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
+++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999999976
Q ss_pred CC
Q psy15152 138 KG 139 (192)
Q Consensus 138 ~~ 139 (192)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 155
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.80 E-value=1.9e-19 Score=134.14 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=79.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...++++|||+|||+.+++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|++|++.|++..|.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ecccC
Q psy15152 134 WCFVK 138 (192)
Q Consensus 134 ~a~~~ 138 (192)
||...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99754
No 156
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.80 E-value=2e-19 Score=141.70 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=90.5
Q ss_pred CCCccCCCCChhHHHh--hhcccCC---CCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCC
Q psy15152 22 GRGFGTETSTRNEIRE--YESMETD---VGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRT 96 (192)
Q Consensus 22 ~rG~gfv~f~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t 96 (192)
+||||||+|...+.+. ...++.. +... ......++.+|||+|||..+++++|+++|+.||.|..+.++.+. +
T Consensus 57 ~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l--~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~ 133 (261)
T 3sde_A 57 DRGFGFIRLESRTLAEIAKAELDGTILKSRPL--RIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-R 133 (261)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCEETTEEC--EEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-T
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCcEECCcee--EeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-C
Confidence 6899999994443322 2223222 2111 11122346789999999999999999999999999999999994 9
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhCC-CeeC---CeEEEEEecccCCCC
Q psy15152 97 GFLKGYALVEYDSYKEASAARDALNG-TTIL---GQTVTVDWCFVKGPK 141 (192)
Q Consensus 97 g~~~g~afV~f~~~~~a~~al~~l~~-~~~~---g~~l~v~~a~~~~~~ 141 (192)
|.++|||||+|.+.++|.+|+..|++ ..+. +++|.|.++.+....
T Consensus 134 g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 134 GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEESS
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCcc
Confidence 99999999999999999999999954 4444 999999999876433
No 157
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.80 E-value=2.1e-20 Score=133.94 Aligned_cols=84 Identities=23% Similarity=0.306 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
.....++|||+|||+++++++|+++|++|| |.+|.|+.|+. |+++|||||+|.+.++|++|| .+|+..|.|+.|.|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 334567899999999999999999999999 77999999974 999999999999999999999 789999999999999
Q ss_pred ecccCCC
Q psy15152 134 WCFVKGP 140 (192)
Q Consensus 134 ~a~~~~~ 140 (192)
++.+...
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 9876654
No 158
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=2.7e-19 Score=124.03 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.++++|||+|||+++++++|+++|+.||.|..+.++.+ +.++|||||+|.+.++|++|++.|||..+.|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34678999999999999999999999999999999866 455899999999999999999999999999999999999
Q ss_pred ccCC
Q psy15152 136 FVKG 139 (192)
Q Consensus 136 ~~~~ 139 (192)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8654
No 159
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.80 E-value=2.1e-19 Score=136.92 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCe--eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCe----EE
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEI--KNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQ----TV 130 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i--~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~----~l 130 (192)
++++|||+|||+++++++|+++|++||.| ..+++..+. |.++|||||+|.+.++|.+|+..|||..|.|+ ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 45789999999999999999999999999 899988774 56679999999999999999999999999886 67
Q ss_pred EEEec
Q psy15152 131 TVDWC 135 (192)
Q Consensus 131 ~v~~a 135 (192)
.|++|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 88776
No 160
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=119.89 Aligned_cols=80 Identities=23% Similarity=0.234 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEE-EEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNL-HLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~-~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
...++|||+|||+++++++|+++|+.||.|..+ .++.++.+| .|||+|.+.++|++|++.|||..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 446789999999999999999999999999999 588886554 399999999999999999999999999999999
Q ss_pred cccCC
Q psy15152 135 CFVKG 139 (192)
Q Consensus 135 a~~~~ 139 (192)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98763
No 161
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.79 E-value=5.9e-20 Score=132.18 Aligned_cols=87 Identities=22% Similarity=0.343 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEE--E---eecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLH--L---NLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT 129 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~--i---~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~ 129 (192)
..+.++|||+|||+++++++|+++|+.||.|..+. + +....+|.++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34568899999999999999999999999987641 1 111237899999999999999999999999999999999
Q ss_pred EEEEecccCCCC
Q psy15152 130 VTVDWCFVKGPK 141 (192)
Q Consensus 130 l~v~~a~~~~~~ 141 (192)
|.|.+|.+...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876543
No 162
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=2e-19 Score=124.91 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE-----E
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT-----V 130 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~-----l 130 (192)
...++|||+|||+++++++|+++|++||.|..+.++.+ |||||+|.+.++|++||+.||+..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45688999999999999999999999999999998765 89999999999999999999999999998 7
Q ss_pred EEEecccCCCCC
Q psy15152 131 TVDWCFVKGPKK 142 (192)
Q Consensus 131 ~v~~a~~~~~~~ 142 (192)
+|..+.+.....
T Consensus 87 ~v~~~~~~~~~~ 98 (115)
T 3beg_B 87 RVKVDGPRSPSY 98 (115)
T ss_dssp EEEECC----CC
T ss_pred EeccCCCCCCCC
Confidence 888776654433
No 163
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=5.5e-19 Score=129.38 Aligned_cols=83 Identities=24% Similarity=0.402 Sum_probs=78.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
++++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|++|++.|++..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred cCC
Q psy15152 137 VKG 139 (192)
Q Consensus 137 ~~~ 139 (192)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 164
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.79 E-value=2e-19 Score=135.66 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEE
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYG-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL-GQTVTVD 133 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~-g~~l~v~ 133 (192)
.++++|||+|||..+++++|+++|++|| .|..+.+..+. +|+|||+|.+.++|.+|++.|||..+. |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 99999986642 789999999999999999999999999 9999999
Q ss_pred ecccC
Q psy15152 134 WCFVK 138 (192)
Q Consensus 134 ~a~~~ 138 (192)
|+.++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99754
No 165
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=7.6e-19 Score=147.70 Aligned_cols=85 Identities=29% Similarity=0.465 Sum_probs=80.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|++||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy15152 136 FVKGP 140 (192)
Q Consensus 136 ~~~~~ 140 (192)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87654
No 166
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-19 Score=123.07 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
..++|||+|||+++++++|+++|++||.|..+.++. ++|||||+|.+.++|++|++.|||..+.|+.|.|.||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457899999999999999999999999999998864 46899999999999999999999999999999999997
Q ss_pred cCC
Q psy15152 137 VKG 139 (192)
Q Consensus 137 ~~~ 139 (192)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 167
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.79 E-value=5.6e-19 Score=136.51 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEe
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYG-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL-GQTVTVDW 134 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~-g~~l~v~~ 134 (192)
++++|||+|||.++++++|+++|++|| .|..+.++.+ .+|||||+|.+.++|.+|++.|+|..+. |+.|.|.|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999998653 2689999999999999999999999999 99999999
Q ss_pred cccC
Q psy15152 135 CFVK 138 (192)
Q Consensus 135 a~~~ 138 (192)
+.++
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9764
No 168
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=126.94 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCe----eEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEI----KNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i----~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
.+..+|||+|||+++|+++|+++|++||.| ..|.|+.++ +|+++|||||+|.+.++|++|++. |+..|.|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 446789999999999999999999999975 689999995 999999999999999999999986 99999999999
Q ss_pred EEecccC
Q psy15152 132 VDWCFVK 138 (192)
Q Consensus 132 v~~a~~~ 138 (192)
|..+.++
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988644
No 169
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.7e-19 Score=124.16 Aligned_cols=78 Identities=22% Similarity=0.248 Sum_probs=71.0
Q ss_pred cEEEEcCC----CCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecC----HHH----HHHHHH--HhCCCe
Q psy15152 59 WILFVTGV----HEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDS----YKE----ASAARD--ALNGTT 124 (192)
Q Consensus 59 ~~l~V~nL----p~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~----~~~----a~~al~--~l~~~~ 124 (192)
..|||+|| |+.+++++|+++|+.||+|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 333 888888 789999
Q ss_pred eCCeEEEEEecc
Q psy15152 125 ILGQTVTVDWCF 136 (192)
Q Consensus 125 ~~g~~l~v~~a~ 136 (192)
|+|+.|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999754
No 170
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=2.7e-19 Score=126.02 Aligned_cols=82 Identities=21% Similarity=0.219 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCee--EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIK--NLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
......+|||+|||+++++++|+++|+.| .|. +|.|+.|+. |+++|||||+|.+.++|++|++. ++..|+|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 33456889999999999999999999999 677 899999985 99999999999999999999985 78999999999
Q ss_pred EEecccC
Q psy15152 132 VDWCFVK 138 (192)
Q Consensus 132 v~~a~~~ 138 (192)
|.++.++
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 171
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=1.1e-18 Score=115.33 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
..++|||+|||+++++++|+++|++| .|..+.+. +++|||||+|.+.++|++|++.|||..+.|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 568999999999999999999999999999999999986
Q ss_pred cC
Q psy15152 137 VK 138 (192)
Q Consensus 137 ~~ 138 (192)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 172
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=114.74 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=66.3
Q ss_pred CCcE-EEEcCCCCCCcHHH----HHHhhccC-CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy15152 57 EGWI-LFVTGVHEEAQEDD----MHEKFSEY-GEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTV 130 (192)
Q Consensus 57 ~~~~-l~V~nLp~~~t~~~----L~~~F~~~-G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l 130 (192)
+..+ |||+|||+.+++++ |+++|++| |+|.+| +| |+|||.|.+.++|++|++.|+|..+.|++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4455 99999999999987 56899999 599998 44 999999999999999999999999999999
Q ss_pred EEEecccCCC
Q psy15152 131 TVDWCFVKGP 140 (192)
Q Consensus 131 ~v~~a~~~~~ 140 (192)
+|.||..++.
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999987654
No 173
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=2.2e-18 Score=129.34 Aligned_cols=86 Identities=20% Similarity=0.362 Sum_probs=78.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
....+.++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3445578999999999999999999999999999999999998999999999999999999999986 999999999999
Q ss_pred EecccCC
Q psy15152 133 DWCFVKG 139 (192)
Q Consensus 133 ~~a~~~~ 139 (192)
.++.+..
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9987653
No 174
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=120.57 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=69.7
Q ss_pred CCCcEEEE--cCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCee-----CCe
Q psy15152 56 VEGWILFV--TGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTI-----LGQ 128 (192)
Q Consensus 56 ~~~~~l~V--~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~-----~g~ 128 (192)
.++.+||| +||++++++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|||..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34678999 779999999999999999999999887532 68999999999999999999999998 689
Q ss_pred EEEEEecccCC
Q psy15152 129 TVTVDWCFVKG 139 (192)
Q Consensus 129 ~l~v~~a~~~~ 139 (192)
+|.|.|+...+
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999997543
No 175
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=3.7e-18 Score=124.82 Aligned_cols=78 Identities=21% Similarity=0.281 Sum_probs=71.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEec
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG--QTVTVDWC 135 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g--~~l~v~~a 135 (192)
..+|||+||++.+++++|+++|++||.|.+|.+..+. ++|||||+|.+.++|++|++.|||..|.| +.|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 4679999999999999999999999999999986442 57999999999999999999999999966 99999999
Q ss_pred ccCC
Q psy15152 136 FVKG 139 (192)
Q Consensus 136 ~~~~ 139 (192)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8764
No 176
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=4.7e-18 Score=119.91 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=69.9
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEec
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGY-ALVEYDSYKEASAARDALNGTTILG--QTVTVDWC 135 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~-afV~f~~~~~a~~al~~l~~~~~~g--~~l~v~~a 135 (192)
-.|||+||++.+|+++|+++|++||.|.+|.+..+. +|| |||+|.+.++|++|++.|||..|.| +.|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 568899999999999999999999999999887653 677 9999999999999999999999988 89999999
Q ss_pred ccCC
Q psy15152 136 FVKG 139 (192)
Q Consensus 136 ~~~~ 139 (192)
++..
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8764
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=2.8e-18 Score=113.82 Aligned_cols=76 Identities=24% Similarity=0.421 Sum_probs=63.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCe--eCCeEEEE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTT--ILGQTVTV 132 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~--~~g~~l~v 132 (192)
..+.++|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|++ |++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 345678999999999999999999999999999999875 68999999999999983 45655 56999999
Q ss_pred EecccCC
Q psy15152 133 DWCFVKG 139 (192)
Q Consensus 133 ~~a~~~~ 139 (192)
.+|.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9998764
No 178
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=4e-18 Score=124.33 Aligned_cols=80 Identities=29% Similarity=0.514 Sum_probs=74.9
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccC
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVK 138 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~ 138 (192)
++|||+|||.++++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999997 6889999999999999999999999999999999999999765
Q ss_pred C
Q psy15152 139 G 139 (192)
Q Consensus 139 ~ 139 (192)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 179
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.1e-18 Score=117.55 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCC---CCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRT---GFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~t---g~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
...++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|++.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3457899999999999999999999999999 888888776 7999999999999999999999984 377777777
Q ss_pred Eecc
Q psy15152 133 DWCF 136 (192)
Q Consensus 133 ~~a~ 136 (192)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 180
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=2.4e-17 Score=115.62 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=67.6
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceE-EEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEec
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGY-ALVEYDSYKEASAARDALNGTTILG--QTVTVDWC 135 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~-afV~f~~~~~a~~al~~l~~~~~~g--~~l~v~~a 135 (192)
-.|||+||++.+++++|+++|++||.|.++.+.. + .|| |||+|.+.++|++|++.|||..|.| +.|+|.||
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 3478999999999999999999999999999864 2 276 9999999999999999999999987 69999999
Q ss_pred ccCC
Q psy15152 136 FVKG 139 (192)
Q Consensus 136 ~~~~ 139 (192)
.++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8764
No 181
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.75 E-value=6.1e-18 Score=128.82 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCC-CCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 56 VEGWILFVTGVH-EEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 56 ~~~~~l~V~nLp-~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
.++++|||+||| +.+++++|+++|++||.|.+++++.++ +|||||+|.+.++|++|++.|||..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 356789999999 899999999999999999999998763 79999999999999999999999999999999999
Q ss_pred cccCC
Q psy15152 135 CFVKG 139 (192)
Q Consensus 135 a~~~~ 139 (192)
+....
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97543
No 182
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-18 Score=113.19 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+.++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35688999999999999999999999999999998765 589999999999999864331 34468999999999
Q ss_pred ccCCCC
Q psy15152 136 FVKGPK 141 (192)
Q Consensus 136 ~~~~~~ 141 (192)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 183
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=7.9e-18 Score=128.11 Aligned_cols=82 Identities=26% Similarity=0.350 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
+.++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 34789999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred cC
Q psy15152 137 VK 138 (192)
Q Consensus 137 ~~ 138 (192)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 184
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.73 E-value=2.8e-17 Score=112.25 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCC-----CCcHHHHHHhhccCCCeeEEEEeecCCC-CCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy15152 56 VEGWILFVTGVHE-----EAQEDDMHEKFSEYGEIKNLHLNLDRRT-GFLKGYALVEYDSYKEASAARDALNGTTILGQT 129 (192)
Q Consensus 56 ~~~~~l~V~nLp~-----~~t~~~L~~~F~~~G~i~~~~i~~~~~t-g~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~ 129 (192)
.++.+|+|.||.. +-++++|++.|++||.|.++.++.++.+ +.++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899999963 2368999999999999999999998654 689999999999999999999999999999999
Q ss_pred EEEEeccc
Q psy15152 130 VTVDWCFV 137 (192)
Q Consensus 130 l~v~~a~~ 137 (192)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 185
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.73 E-value=1.2e-17 Score=116.93 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDW 134 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 134 (192)
..+.++|||+|| ++++++|+++|++||.|.++.+. .++|||||+|.+.++|++|++.|+|..+.|+.|.|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999996 69999999999999999999885 4579999999999999999999999999999999999
Q ss_pred cccCCC
Q psy15152 135 CFVKGP 140 (192)
Q Consensus 135 a~~~~~ 140 (192)
+.++..
T Consensus 108 a~~~~~ 113 (121)
T 2bz2_A 108 ARKQPM 113 (121)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 987643
No 186
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=1.9e-17 Score=121.80 Aligned_cols=83 Identities=24% Similarity=0.365 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCC--CcceEEEEEecCHHHHHHHHHHhCCCeeC---CeEEE
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTG--FLKGYALVEYDSYKEASAARDALNGTTIL---GQTVT 131 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg--~~~g~afV~f~~~~~a~~al~~l~~~~~~---g~~l~ 131 (192)
+.++|||+|||+++++++|+++|++||.|.++.++.++.+| +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46789999999999999999999999999999999998776 89999999999999999999999998876 67888
Q ss_pred EEecccCC
Q psy15152 132 VDWCFVKG 139 (192)
Q Consensus 132 v~~a~~~~ 139 (192)
+.++.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88877654
No 187
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.72 E-value=3.7e-17 Score=123.37 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
.++|||+|||+++++++|+++|++||.|..++++.+. +|.++|||||+|.+.++|++|++.+ +..+.|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4789999999999999999999999999999999996 6999999999999999999999865 5699999999998764
Q ss_pred C
Q psy15152 138 K 138 (192)
Q Consensus 138 ~ 138 (192)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.72 E-value=1.3e-17 Score=121.99 Aligned_cols=80 Identities=19% Similarity=0.445 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecc
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCF 136 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~ 136 (192)
++++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 467899999999999999999999999999999999988999999999999999999999984 678999999999886
Q ss_pred cC
Q psy15152 137 VK 138 (192)
Q Consensus 137 ~~ 138 (192)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 189
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=2e-17 Score=108.74 Aligned_cols=71 Identities=25% Similarity=0.449 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccC----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCee
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEY----G-------EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTI 125 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~ 125 (192)
+.++|||+|||+++++++|+++|+.| | .|.++.+..+ +|||||+|.+.++|++|+ .||+..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46789999999999999999999999 8 8999988755 689999999999999999 9999999
Q ss_pred CCeEEEEEe
Q psy15152 126 LGQTVTVDW 134 (192)
Q Consensus 126 ~g~~l~v~~ 134 (192)
.|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999973
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=8.1e-17 Score=127.64 Aligned_cols=82 Identities=15% Similarity=0.389 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy15152 55 SVEGWILFVTGVHEEAQEDDMH----EKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTV 130 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l 130 (192)
..+.++|||+|||+++++++|+ ++|+.||.|.+|.+.. +|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3457899999999999999966 8999999999998875 68899999999999999999999999999999999
Q ss_pred EEEecccCC
Q psy15152 131 TVDWCFVKG 139 (192)
Q Consensus 131 ~v~~a~~~~ 139 (192)
+|.|+....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997654
No 191
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=3.4e-17 Score=126.94 Aligned_cols=80 Identities=21% Similarity=0.354 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCee
Q psy15152 55 SVEGWILFVTGVHEEA---------QEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTI 125 (192)
Q Consensus 55 ~~~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~ 125 (192)
....++|||+||+..+ ++++|+++|++||.|.+|+++.+ +|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3457899999999998 79999999999999999999854 79999999999999999999999999
Q ss_pred ------------CCeEEEEEecccCCC
Q psy15152 126 ------------LGQTVTVDWCFVKGP 140 (192)
Q Consensus 126 ------------~g~~l~v~~a~~~~~ 140 (192)
.|+.|.|+||...+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986643
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.69 E-value=1.8e-16 Score=122.41 Aligned_cols=82 Identities=18% Similarity=0.349 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCC-CCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q psy15152 53 QRSVEGWILFVTGVHE-EAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~ 131 (192)
....++++|||+|||+ ++++++|+++|+.||.|.++.++.++ +|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4456678999999999 99999999999999999999999885 78999999999999999999999999999999
Q ss_pred EEecccCC
Q psy15152 132 VDWCFVKG 139 (192)
Q Consensus 132 v~~a~~~~ 139 (192)
|.++.+..
T Consensus 104 v~~a~~~~ 111 (229)
T 2adc_A 104 ITLSKHQN 111 (229)
T ss_dssp EECCSCCC
T ss_pred EEEecCcc
Confidence 99998653
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.9e-16 Score=106.12 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=70.8
Q ss_pred CCCCCCcEEEEcCCCCCCc-----------HHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy15152 53 QRSVEGWILFVTGVHEEAQ-----------EDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALN 121 (192)
Q Consensus 53 ~~~~~~~~l~V~nLp~~~t-----------~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (192)
....++.+|+|.||..... +++|+++|++||.|.++.| .++ .++|||||+|.+.++|++|++.||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3445678899999954432 5799999999999999955 554 379999999999999999999999
Q ss_pred CCeeCCeEEEEEecccCC
Q psy15152 122 GTTILGQTVTVDWCFVKG 139 (192)
Q Consensus 122 ~~~~~g~~l~v~~a~~~~ 139 (192)
|..++|+.|.|.++.++.
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 999999999999997754
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=118.84 Aligned_cols=78 Identities=19% Similarity=0.374 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q psy15152 57 EGWILFVTGVHE-EAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWC 135 (192)
Q Consensus 57 ~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a 135 (192)
.+++|||+|||+ ++++++|+++|+.||.|.++.++.++ +|||||+|.+.++|++|++.|+|..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 457899999999 99999999999999999999998875 789999999999999999999999999999999999
Q ss_pred ccCC
Q psy15152 136 FVKG 139 (192)
Q Consensus 136 ~~~~ 139 (192)
.+..
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8654
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=2.8e-17 Score=121.27 Aligned_cols=84 Identities=18% Similarity=0.304 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 54 RSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
...+.++|||+|||+++++++|+++|+.||.+.. .++.+..+|.++|||||+|.+.++|++|++ |++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3445789999999999999999999999998766 334444588999999999999999999995 99999999999999
Q ss_pred ecccCC
Q psy15152 134 WCFVKG 139 (192)
Q Consensus 134 ~a~~~~ 139 (192)
++.+..
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 997654
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=7.6e-16 Score=121.12 Aligned_cols=82 Identities=24% Similarity=0.497 Sum_probs=73.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q psy15152 50 PGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQT 129 (192)
Q Consensus 50 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~ 129 (192)
|........++|||+|||+++|+++|+++|+.||.|..+.+..+ +|||||+|.+.++|++|+..|+|..+.|+.
T Consensus 14 p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 14 PGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp TTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 33444456789999999999999999999999999999998644 689999999999999999999999999999
Q ss_pred EEEEeccc
Q psy15152 130 VTVDWCFV 137 (192)
Q Consensus 130 l~v~~a~~ 137 (192)
|.|.++.+
T Consensus 88 l~v~~a~~ 95 (261)
T 3sde_A 88 LRIRFATH 95 (261)
T ss_dssp CEEEECCC
T ss_pred eEeeeccc
Confidence 99999864
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.64 E-value=1.3e-16 Score=108.83 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=65.0
Q ss_pred EcCCCCCCcHHHHHHhh------------ccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy15152 63 VTGVHEEAQEDDMHEKF------------SEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTV 130 (192)
Q Consensus 63 V~nLp~~~t~~~L~~~F------------~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l 130 (192)
+.||++.+++++|++.| ++||.|.++.++.++ +|.++|||||+|.+.++|++|++.|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56778888888777666 999999999999886 58999999999999999999999999999999999
Q ss_pred EEEec
Q psy15152 131 TVDWC 135 (192)
Q Consensus 131 ~v~~a 135 (192)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.62 E-value=1.3e-15 Score=104.00 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=70.8
Q ss_pred CCCcEEEEcCC--CCCCc--------HHHHHHhhccCCCeeEEEEeecCCC--CCcceEEEEEecCHHHHHHHHHHhCCC
Q psy15152 56 VEGWILFVTGV--HEEAQ--------EDDMHEKFSEYGEIKNLHLNLDRRT--GFLKGYALVEYDSYKEASAARDALNGT 123 (192)
Q Consensus 56 ~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~i~~~~i~~~~~t--g~~~g~afV~f~~~~~a~~al~~l~~~ 123 (192)
.++..|.+.|+ |.+.. +++|++.|++||.|.++.|+.++.+ +.++|+|||+|.+.++|++|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678999998 33332 3689999999999999999988754 468999999999999999999999999
Q ss_pred eeCCeEEEEEeccc
Q psy15152 124 TILGQTVTVDWCFV 137 (192)
Q Consensus 124 ~~~g~~l~v~~a~~ 137 (192)
.++|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999864
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.61 E-value=4.6e-15 Score=103.23 Aligned_cols=81 Identities=17% Similarity=0.296 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCC--C---CcHHHHHHhhccCCCeeEEEEeecCC----CCCcceEEEEEecCHHHHHHHHHHhCCCeeCC
Q psy15152 57 EGWILFVTGVHE--E---AQEDDMHEKFSEYGEIKNLHLNLDRR----TGFLKGYALVEYDSYKEASAARDALNGTTILG 127 (192)
Q Consensus 57 ~~~~l~V~nLp~--~---~t~~~L~~~F~~~G~i~~~~i~~~~~----tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g 127 (192)
++.+|++.|+-. + -.+++|++.|++||.|.++.|+.++. ++.++|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999842 2 23689999999999999999999864 46788999999999999999999999999999
Q ss_pred eEEEEEeccc
Q psy15152 128 QTVTVDWCFV 137 (192)
Q Consensus 128 ~~l~v~~a~~ 137 (192)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.60 E-value=3.4e-15 Score=109.55 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccC----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCee
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEY----G-------EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTI 125 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~ 125 (192)
+.++|||+|||+++++++|+++|++| | .|.++.+. .++|||||+|.+.++|++|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45789999999999999999999999 6 67776654 34799999999999999999 8999999
Q ss_pred CCeEEEEEecccC
Q psy15152 126 LGQTVTVDWCFVK 138 (192)
Q Consensus 126 ~g~~l~v~~a~~~ 138 (192)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.59 E-value=8.1e-15 Score=109.87 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHhhccC----C-------CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCee
Q psy15152 57 EGWILFVTGVHEEAQEDDMHEKFSEY----G-------EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTI 125 (192)
Q Consensus 57 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~ 125 (192)
..++|||+|||+++++++|+++|+.| | .|.++.+ +.++|||||+|.+.++|++|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 45789999999999999999999999 4 5555554 455899999999999999999 8999999
Q ss_pred CCeEEEEEecccCCC
Q psy15152 126 LGQTVTVDWCFVKGP 140 (192)
Q Consensus 126 ~g~~l~v~~a~~~~~ 140 (192)
.|+.|.|.++.....
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQP 90 (198)
T ss_dssp TTEEEEEECCCCCCC
T ss_pred cCceEEEeCCCCCCC
Confidence 999999999876543
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3e-14 Score=96.22 Aligned_cols=66 Identities=24% Similarity=0.358 Sum_probs=58.1
Q ss_pred CCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecccCCC
Q psy15152 68 EEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGP 140 (192)
Q Consensus 68 ~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~~~~ 140 (192)
..+++++|+++|++||.|.++.++ ++++|||||+|.+.++|+.|++.+++ +.|++|+|.|+.+++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 458999999999999999999987 46799999999999999999997544 6899999999976653
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.52 E-value=2.6e-14 Score=116.20 Aligned_cols=76 Identities=21% Similarity=0.327 Sum_probs=65.5
Q ss_pred CCCCcEEEEcC--CCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC---Ce-
Q psy15152 55 SVEGWILFVTG--VHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL---GQ- 128 (192)
Q Consensus 55 ~~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~---g~- 128 (192)
+.++.+|||+| |++.+++++|+++|++||+|.++.+.. +||||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45667899999 578999999999999999999887643 4799999999999999999999999873 44
Q ss_pred -EEEEEecc
Q psy15152 129 -TVTVDWCF 136 (192)
Q Consensus 129 -~l~v~~a~ 136 (192)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67788774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.45 E-value=4.9e-13 Score=92.35 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCCCC----------cHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q psy15152 57 EGWILFVTGVHEEA----------QEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL 126 (192)
Q Consensus 57 ~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~ 126 (192)
++..|.+.|+=..- .+++|++.|++||.|.++.+..+. ++|++||+|.+.++|++|++.|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45678888873321 135789999999999999886653 4899999999999999999999999999
Q ss_pred CeEEEEEeccc
Q psy15152 127 GQTVTVDWCFV 137 (192)
Q Consensus 127 g~~l~v~~a~~ 137 (192)
|+.|.|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999854
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=4.4e-12 Score=83.01 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=65.0
Q ss_pred CCCCcEEEEcCCCC----CCcH----HHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeC
Q psy15152 55 SVEGWILFVTGVHE----EAQE----DDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTIL 126 (192)
Q Consensus 55 ~~~~~~l~V~nLp~----~~t~----~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~ 126 (192)
.++..||+|.-.+. .+-. .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |||..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 34566799987762 2333 5789999999999999998874 8999999999999998 9999999
Q ss_pred CeEEEEEecccCCC
Q psy15152 127 GQTVTVDWCFVKGP 140 (192)
Q Consensus 127 g~~l~v~~a~~~~~ 140 (192)
|+.|+|+++.+...
T Consensus 75 Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 75 NRTITIALKSPSGP 88 (91)
T ss_dssp TEEEEEEECCCSSC
T ss_pred CeEEEEEeCCCCcc
Confidence 99999999987654
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.1e-11 Score=85.90 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=68.3
Q ss_pred CCCCCCCcEEEEcCCCCC-CcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecC-HHHHHHHHHHhC--CCeeCC
Q psy15152 52 PQRSVEGWILFVTGVHEE-AQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDS-YKEASAARDALN--GTTILG 127 (192)
Q Consensus 52 ~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~-~~~a~~al~~l~--~~~~~g 127 (192)
...-..++.|||+||+.+ +++++|+++|++||+|..|.+..+.. .|||.|.+ .++|..|++.|+ +..|.|
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 344567899999999999 99999999999999999999988863 59999999 899999999994 677899
Q ss_pred eEEEEEec
Q psy15152 128 QTVTVDWC 135 (192)
Q Consensus 128 ~~l~v~~a 135 (192)
..++++..
T Consensus 86 ~~~~~evL 93 (121)
T 1owx_A 86 KEVTWEVL 93 (121)
T ss_dssp SSEEEEEC
T ss_pred cEEEEEEC
Confidence 88888754
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.16 E-value=1.1e-10 Score=89.38 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=61.5
Q ss_pred CCcHHHHHHhhccCCCeeEEEEeecC----CCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEeccc
Q psy15152 69 EAQEDDMHEKFSEYGEIKNLHLNLDR----RTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFV 137 (192)
Q Consensus 69 ~~t~~~L~~~F~~~G~i~~~~i~~~~----~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~~a~~ 137 (192)
+-.+++|.+.|++||.|.++.+..+. .++.++|++||+|.+.++|++|++.|||..+.||.|.+.++..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34567899999999999999998554 4558999999999999999999999999999999999999753
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=8.2e-11 Score=77.37 Aligned_cols=74 Identities=18% Similarity=0.256 Sum_probs=62.5
Q ss_pred CCCCCcEEEEcCCCCC------CcH---HHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCe
Q psy15152 54 RSVEGWILFVTGVHEE------AQE---DDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTT 124 (192)
Q Consensus 54 ~~~~~~~l~V~nLp~~------~t~---~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~ 124 (192)
..++..||+|.-++.+ .++ .+|.+.|+.||.|..+++..|+ +||+|.+.++|.+||+ |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3456678999888743 222 4688999999999999999884 9999999999999998 99999
Q ss_pred eCCeEEEEEecc
Q psy15152 125 ILGQTVTVDWCF 136 (192)
Q Consensus 125 ~~g~~l~v~~a~ 136 (192)
+.|+.|+|++..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.60 E-value=2.7e-07 Score=61.94 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=64.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccC-----CCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEY-----GEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTV 132 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~-----G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v 132 (192)
.++|-+-|||..+++..++.+..++ |.+..+.+..|- |-|+|+|.+...|-+|.-+|+|..+.|+.|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 4568888999999999999999999 999999988883 57999999999999999999999999999998
Q ss_pred E
Q psy15152 133 D 133 (192)
Q Consensus 133 ~ 133 (192)
.
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 5
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=4.7e-05 Score=50.58 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=61.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHhhcc-----CCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q psy15152 56 VEGWILFVTGVHEEAQEDDMHEKFSE-----YGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTV 130 (192)
Q Consensus 56 ~~~~~l~V~nLp~~~t~~~L~~~F~~-----~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l 130 (192)
..+.+|.|.|||..++++.|.-+|+. -|+|..+.... +-|+|+|.+.+.|++.|+. ..+.|.|..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 34578999999999999999999986 25787876643 3699999999999999974 5788999999
Q ss_pred EEEecccCCC
Q psy15152 131 TVDWCFVKGP 140 (192)
Q Consensus 131 ~v~~a~~~~~ 140 (192)
.|....+..+
T Consensus 77 sV~P~~~~~~ 86 (104)
T 2dhx_A 77 SLRPAPPRAP 86 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEcCCCCCc
Confidence 9987655443
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=1.7e-05 Score=52.84 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=62.5
Q ss_pred cEEEEcCCCCCC-c----HHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 59 WILFVTGVHEEA-Q----EDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 59 ~~l~V~nLp~~~-t----~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
++|+|.||+.++ . .+.++++|..|+++....++..- .-..|.|.+.++|.+|-..||+..+.|+.++|-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 569999998864 2 25678999999999887776653 146899999999999999999999999999999
Q ss_pred ecccC
Q psy15152 134 WCFVK 138 (192)
Q Consensus 134 ~a~~~ 138 (192)
++.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99844
No 212
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.96 E-value=1.1e-06 Score=60.01 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=22.7
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhcccC---CCC-----CCCCC-------CCCCCCCcEEEEcCCCCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE--IREYESMET---DVG-----DEEPG-------PQRSVEGWILFVTGVHEE 69 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~~---~~~-----~~~~~-------~~~~~~~~~l~V~nLp~~ 69 (192)
+.+|.+++|+. + +||||||+|...+ ..++..++. .+. ...+. ........+|||+|||++
T Consensus 32 v~~v~i~~d~~--~-~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~ 108 (115)
T 4f25_A 32 ILSCKVVCDEN--G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPG 108 (115)
T ss_dssp EEEEEEEEETT--E-EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-----------------------
T ss_pred EEEEEEeecCC--C-CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCC
Confidence 56888999863 2 7899999994333 333333322 211 01111 112233467999999999
Q ss_pred CcHHH
Q psy15152 70 AQEDD 74 (192)
Q Consensus 70 ~t~~~ 74 (192)
+|++.
T Consensus 109 ~T~~a 113 (115)
T 4f25_A 109 STRAA 113 (115)
T ss_dssp -----
T ss_pred ccccc
Confidence 99864
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.94 E-value=4.9e-05 Score=49.94 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=47.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALN 121 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (192)
.+.+++ +.|..+...||.++|++||.| .|+++-|. -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 366777 999999999999999999954 77888874 79999999999999998763
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.79 E-value=0.00023 Score=46.50 Aligned_cols=68 Identities=10% Similarity=0.222 Sum_probs=55.4
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCC--cceEEEEEecCHHHHHHHHHHhCCCeeC
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGF--LKGYALVEYDSYKEASAARDALNGTTIL 126 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~--~~g~afV~f~~~~~a~~al~~l~~~~~~ 126 (192)
++|.|++||+.+|++++.+.++....+..........+.+ .-.-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4689999999999999999999988776666554433222 2367999999999999999999999864
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.74 E-value=7.1e-05 Score=49.31 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=47.5
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALN 121 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (192)
+.+++ +.|..+...||.++|++||. ..|+++-|. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 55667 99999999999999999994 478888884 79999999999999999774
No 216
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.26 E-value=6.4e-05 Score=49.54 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=27.1
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCC--hhHHHhhhccc
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETST--RNEIREYESME 42 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~--~~~~~~~~~~~ 42 (192)
.+.+|.+++|+.|++ +||||||+|. .++..+...++
T Consensus 37 ~v~~v~i~~d~~tg~-srG~aFV~f~~~~~A~~Ai~~ln 74 (95)
T 2lkz_A 37 AVNNIRLIKDKQTQQ-NRGFAFVQLSSAMDASQLLQILQ 74 (95)
T ss_dssp CGGGEECCCCSSSSS-CSSEEEEECSSSHHHHHHHHHHH
T ss_pred cEEEEEEEecCCCCC-CceEeEEEECCHHHHHHHHHHhc
Confidence 456899999999996 9999999993 33444444443
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.23 E-value=0.0019 Score=44.10 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=56.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCC-eEEEEEec
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILG-QTVTVDWC 135 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g-~~l~v~~a 135 (192)
.+-|.|-+.|... ...+.+.|++||.|.+.... ++ ..+-.|.|.++.+|++||.. ||..+.| -.|-|...
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~--~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT--GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS--SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC--CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 4568888999985 56677889999999987752 12 35899999999999999985 9999985 67777764
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.91 E-value=0.0029 Score=41.59 Aligned_cols=78 Identities=10% Similarity=0.218 Sum_probs=53.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCC--cceEEEEEecCHHHHHHHHHHhCCCeeCC-----eEE
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGF--LKGYALVEYDSYKEASAARDALNGTTILG-----QTV 130 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~--~~g~afV~f~~~~~a~~al~~l~~~~~~g-----~~l 130 (192)
+-+|.|+.||+.+|++++.+.++..-.+..........+.+ .-.-|||.|.+.++.....+..+|..+.+ .+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 34699999999999999998888754432222111111111 12468999999999999999999988643 244
Q ss_pred EEEec
Q psy15152 131 TVDWC 135 (192)
Q Consensus 131 ~v~~a 135 (192)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56665
No 219
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.79 E-value=0.00025 Score=46.10 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=23.1
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.++. +||||||+|...+
T Consensus 28 ~v~~v~i~~d~~t~~-~rg~aFV~F~~~~ 55 (91)
T 2lxi_A 28 QAREVRLMRNKSSGQ-SRGFAFVEFSHLQ 55 (91)
T ss_dssp CCSBCCSSSCSSSCC-CSSEEEEECSSHH
T ss_pred EeEEEEEEecCCCCC-cCceEEEEecCHH
Confidence 356889999999995 9999999994433
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.76 E-value=0.0016 Score=46.32 Aligned_cols=36 Identities=19% Similarity=0.105 Sum_probs=29.9
Q ss_pred EEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCe
Q psy15152 87 NLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTT 124 (192)
Q Consensus 87 ~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~ 124 (192)
.+.+.++. .+++|||||+|.+.++|++|++.+++..
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 45677774 4689999999999999999999887654
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.69 E-value=0.0013 Score=46.46 Aligned_cols=42 Identities=21% Similarity=0.047 Sum_probs=37.9
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHh-CCCeeCCeEEEEEecccC
Q psy15152 96 TGFLKGYALVEYDSYKEASAARDAL-NGTTILGQTVTVDWCFVK 138 (192)
Q Consensus 96 tg~~~g~afV~f~~~~~a~~al~~l-~~~~~~g~~l~v~~a~~~ 138 (192)
..+.+|+++|+|.+.++|++|++.| ||..++| .+.+.++...
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4567899999999999999999999 9999999 9999988653
No 222
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=96.64 E-value=0.0004 Score=44.80 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=22.6
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChh
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRN 33 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~ 33 (192)
.+.++.+++|+.+++ +||||||+|...
T Consensus 29 ~v~~v~i~~~~~~g~-~kG~afV~f~~~ 55 (90)
T 3p5t_L 29 DILEIKFFENRANGQ-SKGFALVGVGSE 55 (90)
T ss_dssp CCCCEEEEECTTTCC-EEEEEEECC-CH
T ss_pred ceEEEEEEecCCCCc-cCcEEEEEECCH
Confidence 467899999999995 999999999433
No 223
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.63 E-value=0.0028 Score=43.93 Aligned_cols=76 Identities=20% Similarity=0.169 Sum_probs=54.2
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeE-EEEeec------------CCCC-CcceEEEEEecCHHHHHHHHHHhCCCe
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKN-LHLNLD------------RRTG-FLKGYALVEYDSYKEASAARDALNGTT 124 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-~~i~~~------------~~tg-~~~g~afV~f~~~~~a~~al~~l~~~~ 124 (192)
.-|.|-+.|++... .+.+.|++||.|.+ .....+ +..+ ....+-.|.|++..+|.+||.. ||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 34667788887654 46677999999865 211110 0000 1245889999999999999985 9999
Q ss_pred eCCeEEEEEecc
Q psy15152 125 ILGQTVTVDWCF 136 (192)
Q Consensus 125 ~~g~~l~v~~a~ 136 (192)
+.|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888764
No 224
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.58 E-value=0.00041 Score=46.81 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=23.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.+|.+++|+.|++ +||||||+|...+.
T Consensus 33 i~~v~i~~d~~tg~-~rG~aFV~f~~~~~ 60 (110)
T 3s8s_A 33 VEEVEILLHPRTRK-HLGLARVLFTSTRG 60 (110)
T ss_dssp EEEEEEEECTTTCC-EEEEEEEEESSHHH
T ss_pred eeEEEEEECCCCCc-eeeEEEEEECCHHH
Confidence 57899999999995 99999999944443
No 225
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.43 E-value=0.00055 Score=45.18 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=23.0
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+.|++ +||||||+|...+
T Consensus 39 i~~v~i~~d~~tg~-~kG~afV~f~~~~ 65 (100)
T 3ns6_A 39 VVNMEFPIDEATGK-TKGFLFVECGSMN 65 (100)
T ss_dssp EEEEECCEETTTTE-ECSEEEEEESSHH
T ss_pred EeEEEEEEcCCCCc-cceEEEEEECCHH
Confidence 56899999999996 9999999994443
No 226
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.43 E-value=0.00079 Score=44.26 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=15.3
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCCh
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTR 32 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~ 32 (192)
+.+|.+++| ++|||||+|..
T Consensus 27 i~~v~i~~~------~~g~afV~f~~ 46 (101)
T 2hvz_A 27 LRTVWIARN------PPGFAFVEFED 46 (101)
T ss_dssp CSEEEEESS------SSSEEEEECSS
T ss_pred eEEEEEeeC------CCCEEEEEECC
Confidence 456777776 78999999933
No 227
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.37 E-value=0.00067 Score=44.78 Aligned_cols=28 Identities=11% Similarity=0.270 Sum_probs=23.4
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.++.+++|+.+++ +||||||+|...+
T Consensus 45 ~I~~v~i~~d~~tg~-~kG~afV~f~~~~ 72 (99)
T 4fxv_A 45 EVESAKLIRDKVAGH-SLGYGFVNYVTAK 72 (99)
T ss_dssp CEEEEEEEECSSSCC-EEEEEEEEESSHH
T ss_pred CEEEeEeeecCCCCc-ccccEEEEECCHH
Confidence 367899999999996 9999999994443
No 228
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.24 E-value=0.0011 Score=44.53 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=39.1
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH--HhhhcccCCCCCCCCCCCCCCCCcEEEE---------cCCCCCCcHHHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI--REYESMETDVGDEEPGPQRSVEGWILFV---------TGVHEEAQEDDM 75 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~V---------~nLp~~~t~~~L 75 (192)
+.++.+++| + +++|||||+|...+. .+...++... .. +..|.| .+++...++++|
T Consensus 35 v~~v~i~~~---~-~~~g~afV~f~~~~~A~~A~~~l~g~~--~~--------g~~l~v~~a~~~~~~~~~~~~~~~~~l 100 (115)
T 3lqv_A 35 IRQIRVGNT---P-ETRGTAYVVYEDIFDAKNAVDHLSGFN--VS--------NRYLVVLYYNANRAFQKMDTKKKEEQL 100 (115)
T ss_dssp EEEEEEECS---T-TTTTCEEEEESSHHHHHHHHHHHTTCB--SS--------SCBCEEEECCHHHHTTTSCHHHHHHHH
T ss_pred eEEEEEeeC---C-CCCcEEEEEECCHHHHHHHHHHcCCCE--EC--------CeEEEEEEecCChhhhhhhHhHhHHHH
Confidence 456777765 3 369999999944433 3333332221 11 111222 467777889999
Q ss_pred HHhhccCCC
Q psy15152 76 HEKFSEYGE 84 (192)
Q Consensus 76 ~~~F~~~G~ 84 (192)
.++|++||-
T Consensus 101 ~~~~~~~g~ 109 (115)
T 3lqv_A 101 KLLKEKYGI 109 (115)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhCC
Confidence 999999984
No 229
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.22 E-value=0.0011 Score=47.66 Aligned_cols=29 Identities=7% Similarity=0.204 Sum_probs=24.5
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
.+.+|.+++|+.+++ +||||||+|...+.
T Consensus 83 ~v~~v~i~~d~~tg~-skGfaFV~f~~~~~ 111 (156)
T 3n9u_C 83 DVVELKFAENRANGQ-SKGYAEVVVASENS 111 (156)
T ss_dssp CEEEEEEEECTTTCC-EEEEEEEEESCHHH
T ss_pred cEEEEEEEecCCCCc-cceEEEEEECCHHH
Confidence 578999999999996 99999999944443
No 230
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.21 E-value=0.0025 Score=53.58 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=41.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHH
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~ 119 (192)
.+.|+|. .|...++.+|.++|++||.|.++.+-.+. | -||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 3679997 79999999999999999999998765442 2 6999999999999977653
No 231
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=96.04 E-value=0.0014 Score=45.30 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=23.9
Q ss_pred eeEEeeccCcCCCCCCccCCCCChh-HHHhhhcc
Q psy15152 9 GIARLKEKARKKKGRGFGTETSTRN-EIREYESM 41 (192)
Q Consensus 9 ~v~~~~d~~~~~k~rG~gfv~f~~~-~~~~~~~~ 41 (192)
+|.+++|+.+++ +||||||+|... +..++..+
T Consensus 54 ~v~i~~d~~tg~-~rG~aFV~f~~~~a~~Ai~~l 86 (131)
T 2m2b_A 54 NVRVIKDKQTQL-NRGFAFIQLSTIEAAQLLQIL 86 (131)
T ss_dssp TEECCBCSSSSS-BCSCEEEECCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCC-cceEEEEEECCHHHHHHHHHh
Confidence 489999999996 999999999444 33333433
No 232
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.01 E-value=0.0038 Score=38.51 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.1
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETST 31 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~ 31 (192)
+.++.+++|+.+++ +||||||+|.
T Consensus 27 v~~v~i~~~~~~~~-~~g~afV~f~ 50 (77)
T 1uaw_A 27 VKECLVMRDPLTKR-SRGFGFVTFM 50 (77)
T ss_dssp CCCEEEECCCCSSS-CSSEEEECCC
T ss_pred EEEEEEecCCCCCC-cCceEEEEEc
Confidence 56889999999995 9999999993
No 233
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.93 E-value=0.0031 Score=42.26 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=21.8
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.++.+++|+ +++ +||||||+|...+
T Consensus 51 ~i~~~~i~~~~-~g~-~~g~afV~f~~~~ 77 (114)
T 1x5o_A 51 QVISTRILRDS-SGT-SRGVGFARMESTE 77 (114)
T ss_dssp CEEEEEEEECS-SSC-EEEEEEEEESCHH
T ss_pred CEEEEEEEECC-CCC-cceEEEEEECCHH
Confidence 36789999998 885 9999999994444
No 234
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=95.89 E-value=0.0036 Score=41.83 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=23.2
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ +||||||+|...+
T Consensus 51 ~i~~v~i~~~~~tg~-~kg~afV~f~~~~ 78 (109)
T 2rs2_A 51 EVKECLVMRDPLTKR-SRGFGFVTFMDQA 78 (109)
T ss_dssp CEEEEEECCCTTTCC-CTTCEEEEESSHH
T ss_pred CeEEEEEEECCCCCC-cCcEEEEEECCHH
Confidence 356899999999996 9999999994443
No 235
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.83 E-value=0.0038 Score=41.41 Aligned_cols=26 Identities=15% Similarity=-0.087 Sum_probs=21.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+. ++ +||||||+|...+
T Consensus 38 v~~v~i~~d~~-g~-~rG~aFV~F~~~e 63 (103)
T 1s79_A 38 VLNIQMRRTLH-KA-FKGSIFVVFDSIE 63 (103)
T ss_dssp EEEEEEECCCT-TS-CCCEEEEEESSHH
T ss_pred EEEEEEEECCC-CC-CccEEEEEECCHH
Confidence 57899999988 75 9999999994444
No 236
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=95.82 E-value=0.0041 Score=39.74 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=22.6
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.++.+++|+.+++ ++|||||+|...+
T Consensus 28 i~~v~i~~~~~~~~-~~g~afV~f~~~~ 54 (90)
T 2ki2_A 28 VFNVKLIYDRETKK-PKGFGFVEMQEES 54 (90)
T ss_dssp CSEEEECCCSSSCC-CCEEEEEEECTTH
T ss_pred EEEEEEEEcCCCCC-cceEEEEEECCHH
Confidence 56889999999995 9999999994444
No 237
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.73 E-value=0.0031 Score=48.08 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=23.8
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ +||||||+|...+
T Consensus 96 ~v~~v~i~~d~~tg~-skGfaFV~f~~~~ 123 (229)
T 3q2s_C 96 DILEIKFFENRANGQ-SKGFALVGVGSEA 123 (229)
T ss_dssp CEEEEEEEECTTTCC-EEEEEEEEESCTT
T ss_pred ceEEEEEEecCCCCc-cceEEEEEECCHH
Confidence 578999999999996 9999999994433
No 238
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.71 E-value=0.0033 Score=41.35 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=23.7
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ +||||||+|...+
T Consensus 40 gi~~v~i~~~~~~g~-~~g~afV~f~~~~ 67 (103)
T 2dng_A 40 SIRSVRLVRDKDTDK-FKGFCYVEFDEVD 67 (103)
T ss_dssp CEEEEEEEECSSSCS-EEEEEEEEESSHH
T ss_pred CceEEEEeecCCCCc-cceEEEEEECCHH
Confidence 477899999999996 9999999994444
No 239
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.70 E-value=0.0051 Score=38.80 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=22.9
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.++.++.|+.+++ +||||||+|...+
T Consensus 31 ~i~~~~i~~~~~~~~-~~g~afV~f~~~~ 58 (85)
T 1x4e_A 31 KIVSTKAILDKTTNK-CKGYGFVDFDSPS 58 (85)
T ss_dssp CEEEEEEECCSSSCS-CCSEEEEEESCHH
T ss_pred CeEEEEEEecCCCCC-cCcEEEEEECCHH
Confidence 356889999999996 9999999994333
No 240
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=95.64 E-value=0.004 Score=41.56 Aligned_cols=29 Identities=7% Similarity=-0.223 Sum_probs=22.1
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.+|.+++|+.+..++|||+||+|...+.
T Consensus 40 V~~v~i~~~~~~~~~~~G~~FV~f~~~~~ 68 (105)
T 2pe8_A 40 VGKCVIFEIPGAPDDEAVRIFLEFERVES 68 (105)
T ss_dssp EEEEEEEECSSCCTTTSEEEEEEESSHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEECCHHH
Confidence 56889999987633599999999954443
No 241
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=95.64 E-value=0.0038 Score=38.42 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=22.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.++.+++|+.+++ +||||||+|...+.
T Consensus 26 i~~v~i~~~~~~~~-~~g~afV~f~~~~~ 53 (75)
T 2mss_A 26 VDDAMLMFDKTTNR-HRGFGFVTFESEDI 53 (75)
T ss_dssp CSEECCCBCSSSTT-SCBEEEEECSCHHH
T ss_pred EEEEEEEecCCCCC-cCcEEEEEECCHHH
Confidence 45788899999995 99999999944443
No 242
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.61 E-value=0.0051 Score=40.05 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=23.0
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ +|||+||+|...+
T Consensus 36 ~i~~v~i~~~~~~~~-~~g~afV~f~~~~ 63 (99)
T 2dgs_A 36 VVTEVVMIYDAEKQR-PRGFGFITFEDEQ 63 (99)
T ss_dssp CEEEEEECCCTTTCS-CCSEEEEEESSHH
T ss_pred CeEEEEEEeCCCCCC-CCceEEEEECCHH
Confidence 356899999999995 9999999994333
No 243
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=95.58 E-value=0.0033 Score=38.65 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=21.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChh
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRN 33 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~ 33 (192)
+.++.+++|+.+++ ++|||||+|...
T Consensus 26 i~~v~i~~~~~~~~-~~g~afV~f~~~ 51 (75)
T 1iqt_A 26 VESIELPMDNKTNK-RRGFCFITFKEE 51 (75)
T ss_dssp CSEECCCCSCCCSS-SCCCEEEECSSS
T ss_pred eEEEEEEecCCCCC-cCCEEEEEECCH
Confidence 45788899999995 999999999433
No 244
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.53 E-value=0.0053 Score=41.23 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=21.7
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+. ++ +||||||+|...+
T Consensus 41 ~v~~v~i~~d~~-g~-~~G~afV~F~~~~ 67 (109)
T 2dnn_A 41 RVDAVHLLKDHV-GR-NNGNGLVKFLSPQ 67 (109)
T ss_dssp CCCEEEECCCTT-CC-CCSEEEEECSSHH
T ss_pred CeeEEEEEECCC-CC-CCeEEEEEECCHH
Confidence 467899999986 75 9999999994444
No 245
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=95.49 E-value=0.0069 Score=38.43 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=23.1
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.++.+++|+.+++ ++|||||+|...+
T Consensus 32 ~i~~v~i~~~~~~~~-~~g~afV~f~~~~ 59 (89)
T 3ucg_A 32 SVNRVTILCDKFSGH-PKGFAYIEFSDKE 59 (89)
T ss_dssp CEEEEEEEESCSSSS-CCEEEEEEESSTH
T ss_pred CEEEEEEEecCCCCC-cceEEEEEECCHH
Confidence 356899999999995 9999999994443
No 246
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.47 E-value=0.004 Score=40.56 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=21.5
Q ss_pred eeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 9 GIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 9 ~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
++.+++|+.+++ ++||+||+|...+
T Consensus 39 ~v~i~~~~~~g~-~~g~afV~f~~~~ 63 (99)
T 2div_A 39 SVKIIRNRLTGI-PAGYCFVEFADLA 63 (99)
T ss_dssp EEEEEECSSSCC-EEEEEEEECSCHH
T ss_pred EEEEeecCCCCC-cCCEEEEEeCCHH
Confidence 889999999995 9999999994444
No 247
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=95.45 E-value=0.0078 Score=40.49 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=21.4
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCC
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETS 30 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f 30 (192)
.+.+|.+++|+.+++ +|||+||+|
T Consensus 66 ~i~~~~i~~~~~~g~-~~g~afV~f 89 (118)
T 2khc_A 66 NVISAKVFIDKQTSL-SKCFGFVSF 89 (118)
T ss_dssp EEEEEEECCCSSSSC-CCCEEEEEE
T ss_pred CEEEEEEEeCCCCCC-cCcEEEEEE
Confidence 367899999999995 999999999
No 248
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.41 E-value=0.008 Score=40.35 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=23.7
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
.+.+|.+++|+.+++ +|||+||+|...+.
T Consensus 43 ~i~~v~i~~~~~~~~-~~g~afV~f~~~~~ 71 (116)
T 2cqd_A 43 DIEEAVVITDRQTGK-SRGYGFVTMADRAA 71 (116)
T ss_dssp CEEEEEESCCSSSCC-CCSEEEEEESSHHH
T ss_pred CeeEEEEEEcCCCCc-cceEEEEEECCHHH
Confidence 367899999999995 99999999944443
No 249
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=95.40 E-value=0.0036 Score=41.33 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.7
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+.+++ +||||||+|...+
T Consensus 40 i~~v~i~~~~~~g~-~~g~afV~f~~~~ 66 (106)
T 2dgp_A 40 IYELTVLKDRFTGM-HKGCAFLTYCERE 66 (106)
T ss_dssp CCEEECCCCSSSCS-CCSEEEEEESSHH
T ss_pred eeEEEEEecCCCCC-cceEEEEEECCHH
Confidence 56889999999995 9999999994443
No 250
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=95.39 E-value=0.0039 Score=40.45 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=22.7
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.++.+++|+.+++ ++|||||+|...+
T Consensus 29 i~~v~i~~~~~~g~-~~g~afV~f~~~~ 55 (96)
T 2x1f_A 29 VINLKMMFDPQTGR-SKGYAFIEFRDLE 55 (96)
T ss_dssp EEEEECCBCTTTCC-BCSEEEEEESSHH
T ss_pred EEEEEEEeCCCCCc-cceEEEEEECCHH
Confidence 56889999999995 9999999994444
No 251
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.39 E-value=0.0057 Score=40.14 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.8
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCC
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETST 31 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~ 31 (192)
.+.+|.+++|+.+++ ++|||||+|.
T Consensus 39 ~i~~v~i~~~~~~~~-~~g~afV~f~ 63 (103)
T 2dnm_A 39 RVGDVYIPREPHTKA-PRGFAFVRFH 63 (103)
T ss_dssp CEEEEECCBCSSSCS-BCSCEEEEES
T ss_pred CEEEEEEEeCCCCCC-CCeEEEEEEC
Confidence 357899999999995 9999999993
No 252
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=95.36 E-value=0.005 Score=42.53 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=19.2
Q ss_pred eeEEeeccCcCCCCCCccCCCCCh
Q psy15152 9 GIARLKEKARKKKGRGFGTETSTR 32 (192)
Q Consensus 9 ~v~~~~d~~~~~k~rG~gfv~f~~ 32 (192)
+|.+++|+. ++ +||||||+|..
T Consensus 72 ~v~i~~d~~-Gr-srGfaFV~F~~ 93 (126)
T 2hgm_A 72 GITLPVDPE-GK-ITGEAFVQFAS 93 (126)
T ss_dssp EEECCCCSS-SS-SCSEEEEEESS
T ss_pred EEEEEECCC-CC-CceEEEEEECC
Confidence 899999988 75 99999999933
No 253
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.35 E-value=0.0054 Score=39.90 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=23.0
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ ++||+||+|...+
T Consensus 34 ~i~~v~i~~~~~~~~-~~g~afV~f~~~~ 61 (99)
T 1whw_A 34 PLSELHYPIDSLTKK-PKGFAFVTFMFPE 61 (99)
T ss_dssp CEEEEECCCCTTTCC-CCSEEEEEESSHH
T ss_pred CEeEEEEEecCCCCC-cCeEEEEEECCHH
Confidence 356899999999995 9999999994444
No 254
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.33 E-value=0.0061 Score=40.80 Aligned_cols=27 Identities=4% Similarity=0.276 Sum_probs=22.7
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChh
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRN 33 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~ 33 (192)
.+.+|.+++|+.+++ +||||||+|...
T Consensus 51 ~i~~v~i~~~~~~g~-~~g~afV~f~~~ 77 (114)
T 2cq4_A 51 KVRDVRIISDRNSRR-SKGIAYVEFCEI 77 (114)
T ss_dssp CEEEEEECCSCCSSS-CCCCEEEEESCG
T ss_pred CEeEEEEEecCCCCc-cCcEEEEEeCcH
Confidence 367899999999995 999999999433
No 255
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.32 E-value=0.0089 Score=38.45 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=23.1
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ ++||+||+|...+
T Consensus 31 ~v~~v~i~~~~~~~~-~~g~afV~f~~~~ 58 (95)
T 2dnz_A 31 KIDNIVLMKDSDTGR-SKGYGFITFSDSE 58 (95)
T ss_dssp CEEEEEEECCSSSCC-CCSEEEEEESCHH
T ss_pred CEeEEEEeecCCCCc-eeeEEEEEECCHH
Confidence 367899999999995 9999999994443
No 256
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.32 E-value=0.0064 Score=39.24 Aligned_cols=28 Identities=4% Similarity=0.126 Sum_probs=22.4
Q ss_pred eeee-EEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGI-ARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v-~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.++ .+++|+.++. ++|||||+|...+.
T Consensus 32 i~~~~~i~~~~~~g~-~~g~afV~f~~~~~ 60 (96)
T 1x5t_A 32 ILQTPKIMRDPDTGN-SKGYAFINFASFDA 60 (96)
T ss_dssp BSSCCEECCCTTTCS-CCSEEEEEBSSHHH
T ss_pred eeEEEEEEEcCCCCC-cCeEEEEEECCHHH
Confidence 4567 8999999996 99999999944443
No 257
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=95.31 E-value=0.0042 Score=39.42 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=23.0
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.++.+++|+.+++ ++|||||+|...+
T Consensus 37 ~i~~v~i~~~~~~g~-~~g~afV~f~~~~ 64 (87)
T 3s7r_A 37 EVVDCTIKMDPNTGR-SRGFGFILFKDAA 64 (87)
T ss_dssp CEEEEEEEECTTTCC-EEEEEEEEESSTH
T ss_pred CEEEEEEeecCCCCc-cccEEEEEECCHH
Confidence 357899999999995 9999999994333
No 258
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.31 E-value=0.0059 Score=40.15 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=23.0
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ +|||+||+|...+
T Consensus 41 ~i~~v~i~~~~~~~~-~~g~afV~f~~~~ 68 (105)
T 1x5u_A 41 PVVNTHMPKDRVTGQ-HQGYGFVEFLSEE 68 (105)
T ss_dssp CEEEEECCBCSSSCS-BCSCEEEEESSHH
T ss_pred CeEEEEEEecCCCCc-CCcEEEEEECCHH
Confidence 356889999999995 9999999994444
No 259
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.26 E-value=0.0051 Score=40.23 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=22.8
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ ++||+||+|...+
T Consensus 38 ~i~~v~i~~~~~~~~-~~g~afV~f~~~~ 65 (102)
T 2cqb_A 38 DITDIQIPLDYETEK-HRGFAFVEFELAE 65 (102)
T ss_dssp CCCCEECCCCSSSCC-CSSEEEECCSSHH
T ss_pred CEEEEEEEecCCCCC-cceEEEEEECCHH
Confidence 356889999999995 9999999994433
No 260
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.26 E-value=0.0081 Score=38.58 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=23.2
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ ++||+||+|...+
T Consensus 42 ~v~~v~i~~~~~~~~-~~g~afV~f~~~~ 69 (94)
T 2e5h_A 42 KVVKVTIMKDKDTRK-SKGVAFILFLDKD 69 (94)
T ss_dssp CEEEEEECCCSSSCC-CTTCEEEEESCHH
T ss_pred CeEEEEEEeCCCCCC-cccEEEEEECCHH
Confidence 356899999999995 9999999994444
No 261
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.24 E-value=0.0082 Score=40.29 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=22.7
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+.+++ +||||||+|...+
T Consensus 54 i~~v~i~~~~~~g~-~~g~afV~f~~~~ 80 (116)
T 1x4b_A 54 LTDCVVMRDPASKR-SRGFGFVTFSSMA 80 (116)
T ss_dssp CSEEEEECCTTTSS-CCSEEEEECSSHH
T ss_pred EEEEEEEECCCCCC-cCceEEEEeCCHH
Confidence 56889999999996 9999999994444
No 262
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.23 E-value=0.007 Score=39.62 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=21.9
Q ss_pred eeeeEEeecc-CcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEK-ARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~-~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+ .+++ +||||||+|...+
T Consensus 45 i~~v~i~~~~~~~g~-~~g~afV~f~~~~ 72 (100)
T 2j76_E 45 ISAVRLPREPSNPER-LKGFGYAEFEDLD 72 (100)
T ss_dssp EEEEECSCCTTTTCC-CCSCEEEEECCHH
T ss_pred CeEEEEEecCCcCCc-cCeEEEEEECCHH
Confidence 6788999998 5785 9999999994433
No 263
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.22 E-value=0.0065 Score=40.82 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=20.9
Q ss_pred eeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 8 KGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 8 ~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
.+|.+++|+ +++ +||||||+|...+.
T Consensus 44 ~~v~i~~d~-~g~-~~G~afV~F~~~~~ 69 (114)
T 2cpy_A 44 NAVHVLVDN-NGQ-GLGQALVQFKNEDD 69 (114)
T ss_dssp TTEEECCCT-TSS-CSSCEEEECSSHHH
T ss_pred CeEEEEECC-CCC-cceEEEEEECCHHH
Confidence 458899999 885 99999999954443
No 264
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=95.19 E-value=0.0039 Score=39.44 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=22.8
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.++.+++|+.+++ ++|||||+|...+
T Consensus 33 i~~v~i~~~~~~~~-~~g~afV~f~~~~ 59 (87)
T 3bs9_A 33 ISDARVVKDMATGK-SKGYGFVSFFNKW 59 (87)
T ss_dssp EEEEEEEECTTTCC-EEEEEEEEESSHH
T ss_pred EeEEEEEecCCCCc-cceEEEEEECCHH
Confidence 57899999999995 9999999994444
No 265
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.19 E-value=0.0074 Score=39.69 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=22.4
Q ss_pred eeeeEEeeccCc-CCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKAR-KKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~-~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+.+ ++ ++|||||+|...+
T Consensus 41 i~~v~i~~~~~~~g~-~~g~afV~f~~~~ 68 (104)
T 1wi8_A 41 ISAVRLPREPSNPER-LKGFGYAEFEDLD 68 (104)
T ss_dssp EEEEECCBCSSCTTS-BCSCEEEEESSHH
T ss_pred ceEEEEecCCCCCCC-cCeEEEEEECCHH
Confidence 678999999998 74 9999999994443
No 266
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.16 E-value=0.0067 Score=40.28 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=22.7
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+.+++ ++|||||+|...+
T Consensus 42 i~~v~i~~~~~~g~-~~g~afV~f~~~~ 68 (111)
T 1x4h_A 42 LKYVRVVLHPDTEH-SKGCAFAQFMTQE 68 (111)
T ss_dssp EEEEECCBCSSSCC-BCSEEEEEESSHH
T ss_pred eEEEEEEecCCCCC-CccEEEEEECCHH
Confidence 57899999999995 9999999994333
No 267
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=95.10 E-value=0.0044 Score=40.87 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=23.3
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ ++|||||+|...+
T Consensus 49 ~i~~v~i~~~~~~~~-~~g~afV~f~~~~ 76 (106)
T 1p27_B 49 EIKNIHLNLDRRTGY-LKGYTLVEYETYK 76 (106)
T ss_dssp CEEEEEEEECTTTSS-EEEEEEEEESCHH
T ss_pred CeEEEEEEecCCCCc-eeeEEEEEECCHH
Confidence 357899999999995 9999999994443
No 268
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.0037 Score=43.51 Aligned_cols=24 Identities=0% Similarity=-0.143 Sum_probs=22.1
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETST 31 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~ 31 (192)
+.++.++.|+.|++ +||||||+|.
T Consensus 33 V~~~~li~Dp~Tg~-slGfgfVef~ 56 (136)
T 2j8a_A 33 ISHFEAFNDPNSAL-PLHVYLIKYA 56 (136)
T ss_dssp CSEEEEEECTTTCC-EEEEEEEECC
T ss_pred eEEEEEEecCCCCc-eeeEEEEEEC
Confidence 56899999999997 9999999996
No 269
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=95.09 E-value=0.0042 Score=38.91 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=22.7
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.++.+++|+.+++ ++|||||+|...+
T Consensus 28 i~~~~i~~~~~~~~-~~g~afV~f~~~~ 54 (83)
T 3md1_A 28 YLSGHVMWDMQTGS-SRGYGFVSFTSQD 54 (83)
T ss_dssp EEEEEEEECTTTCC-EEEEEEEEESCHH
T ss_pred eeEEEEEEcCCCCC-ccceEEEEECCHH
Confidence 56889999999995 9999999994444
No 270
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.09 E-value=0.0051 Score=40.63 Aligned_cols=25 Identities=4% Similarity=-0.174 Sum_probs=20.4
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChh
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRN 33 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~ 33 (192)
+.+|.+++|+ +++ +|||+||+|...
T Consensus 41 ~~~v~i~~d~-~g~-~~G~afV~F~~~ 65 (102)
T 1wez_A 41 PMRVHIEIGP-DGR-VTGEADVEFATH 65 (102)
T ss_dssp CSEEEEEESS-SSC-EEEEEEEECSSS
T ss_pred ceEEEEEECC-CCC-EeeEEEEEECCH
Confidence 4589999998 775 999999999433
No 271
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.09 E-value=0.0075 Score=39.43 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=22.6
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+.+++ ++||+||+|...+
T Consensus 39 i~~v~i~~~~~~~~-~~g~afV~f~~~~ 65 (102)
T 1x5s_A 39 ISEVVVVKDRETQR-SRGFGFVTFENID 65 (102)
T ss_dssp CCEEEECCCSSSCS-CCSEEEEECSSHH
T ss_pred eEEEEEEeCCCCCC-cccEEEEEECCHH
Confidence 56889999999995 9999999994443
No 272
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=95.08 E-value=0.0045 Score=40.35 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=20.6
Q ss_pred eEEeeccCcCCCCCCccCCCCChhH
Q psy15152 10 IARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 10 v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+++|+.+++ +||||||+|...+
T Consensus 51 v~i~~~~~~g~-~~G~afV~f~~~~ 74 (99)
T 2la6_A 51 INLYTDRETGK-LKGEATVSFDDPP 74 (99)
T ss_dssp EEEEECTTTCS-EEEEEEEEBSSHH
T ss_pred EEEEecCCCCC-eeeEEEEEECCHH
Confidence 88999999996 9999999994444
No 273
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=95.08 E-value=0.0079 Score=41.50 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=23.2
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ +||||||+|...+
T Consensus 72 ~I~~v~i~~d~~tg~-~~G~afV~F~~~~ 99 (129)
T 2kxn_B 72 PIADVSIVYDQQSRR-SRGFAFVYFENVD 99 (129)
T ss_dssp CEEEEEEECCSSSSC-CCCEEEEEESCHH
T ss_pred CeEEEEEEecCCCCc-cceEEEEEECCHH
Confidence 367899999999995 9999999994433
No 274
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.05 E-value=0.0061 Score=39.98 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.1
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ +||||||+|...+
T Consensus 41 ~i~~v~i~~~~~~g~-~~g~afV~f~~~~ 68 (103)
T 2cqg_A 41 EVLMVQVKKDLKTGH-SKGFGFVRFTEYE 68 (103)
T ss_dssp CEEEEEEEECSSSCS-EEEEEEEEESSHH
T ss_pred CeEEEEEEecCCCCC-ccceEEEEECCHH
Confidence 356899999999995 9999999994433
No 275
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.00 E-value=0.006 Score=40.01 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=23.2
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.++. ++||+||+|...+
T Consensus 41 ~i~~v~i~~~~~~~~-~~g~afV~f~~~~ 68 (103)
T 2cq0_A 41 SISRIYLAKDKTTGQ-SKGFAFISFHRRE 68 (103)
T ss_dssp CEEEEEEEECSSSCS-EEEEEEEEESSHH
T ss_pred CeEEEEEeecCCCCc-eeeEEEEEECCHH
Confidence 367899999999995 9999999994444
No 276
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=94.92 E-value=0.0097 Score=40.39 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=23.2
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.+|.+++|+.+++ ++|||||+|...+.
T Consensus 63 i~~v~i~~~~~~~~-~~g~afV~f~~~~~ 90 (124)
T 2jwn_A 63 INRITILCDKFSGH-PKGYAYIEFAERNS 90 (124)
T ss_dssp EEEEEEEEECTTSS-CEEEEEEEESSHHH
T ss_pred EEEEEEEecCCCCC-cccEEEEEECCHHH
Confidence 56899999999996 99999999944443
No 277
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.89 E-value=0.006 Score=40.17 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=21.9
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCC
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETST 31 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~ 31 (192)
.+.+|.+++|+.+++ +|||+||+|.
T Consensus 42 ~v~~v~i~~~~~~g~-~~g~afV~f~ 66 (105)
T 2dh8_A 42 EVVDCVIMKDKTTNQ-SRGFGFVKFK 66 (105)
T ss_dssp CEEEEEEEECSSSCC-EEEEEEEEES
T ss_pred CeEEEEEeeCCCCCC-cceEEEEEEC
Confidence 356899999999995 9999999993
No 278
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.87 E-value=0.0061 Score=40.01 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.4
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+ +++ +||||||+|...+
T Consensus 37 v~~v~i~~~~-~g~-~~g~afV~f~~~~ 62 (104)
T 2dhg_A 37 CRGGKVVLDQ-TGV-SKGYGFVKFTDEL 62 (104)
T ss_dssp EEEEEEEECT-TCC-EEEEEEEEESCHH
T ss_pred eEEEEEEECC-CCC-ccceEEEEECCHH
Confidence 5689999999 885 9999999994333
No 279
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=94.84 E-value=0.0053 Score=38.63 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=23.4
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
.+.++.+++|+.+++ ++|||||+|...+.
T Consensus 33 ~i~~v~i~~~~~~~~-~~g~afV~f~~~~~ 61 (85)
T 3mdf_A 33 DITDIQIPLDYETEK-HRGFAFVEFELAED 61 (85)
T ss_dssp CEEEEECCEETTTTE-ECSEEEEEESSHHH
T ss_pred CEEEEEEEECCCCCc-cccEEEEEECCHHH
Confidence 356889999999996 99999999944443
No 280
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=94.78 E-value=0.0071 Score=40.49 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=23.1
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ ++|||||+|...+
T Consensus 41 ~i~~v~i~~~~~~~~-~~g~afV~f~~~~ 68 (115)
T 2dgo_A 41 RISDARVVKDMATGK-SKGYGFVSFFNKW 68 (115)
T ss_dssp CEEEEEEEECTTTCC-EEEEEEEEESSHH
T ss_pred CeEEEEEEEcCCCCC-cceEEEEEECCHH
Confidence 367899999999995 9999999994433
No 281
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=94.77 E-value=0.0075 Score=40.03 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=22.6
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+.++. ++|||||+|...+
T Consensus 53 i~~v~i~~~~~~~~-~~g~afV~f~~~~ 79 (110)
T 1oo0_B 53 IKNIHLNLDRRTGF-SKGYALVEYETHK 79 (110)
T ss_dssp EEEEECCBCTTTSS-BCSEEEEEESSHH
T ss_pred EEEEEEEecCCCCC-cceEEEEEECCHH
Confidence 56889999999995 9999999994444
No 282
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.75 E-value=0.0064 Score=39.10 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=23.2
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ +|||+||+|...+
T Consensus 41 ~v~~v~i~~~~~~~~-~~g~afV~f~~~~ 68 (95)
T 2cqc_A 41 PIADVSIVYDQQSRR-SRGFAFVYFENVD 68 (95)
T ss_dssp CEEEEEEEECSSSSS-EEEEEEEEESSHH
T ss_pred CeeEEEEEEcCCCCC-cccEEEEEECCHH
Confidence 367899999999995 9999999994443
No 283
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=94.70 E-value=0.0064 Score=42.19 Aligned_cols=27 Identities=11% Similarity=0.373 Sum_probs=22.8
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+.+++ +||||||+|...+
T Consensus 69 i~~v~i~~~~~~~~-~~g~afV~f~~~~ 95 (139)
T 1u6f_A 69 IESVKIVCDRETRQ-SRGYGFVKFQSGS 95 (139)
T ss_dssp EEEEEEEEETTTTE-EEEEEEEEESSHH
T ss_pred eEEEEEEEcCCCCC-cceEEEEEECCHH
Confidence 57899999999995 9999999994444
No 284
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=94.70 E-value=0.0063 Score=40.79 Aligned_cols=27 Identities=11% Similarity=0.114 Sum_probs=22.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+.+++ +|||+||+|...+
T Consensus 52 i~~v~i~~~~~~g~-~~g~afV~f~~~~ 78 (115)
T 2cpz_A 52 VVSAKVFIDKQTNL-SKCFGFVSYDNPV 78 (115)
T ss_dssp CSEEEEEECSSSCS-EEEEEEEECSSHH
T ss_pred eEEEEEEECCCCCC-cCccEEEEECCHH
Confidence 56889999999995 9999999994333
No 285
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=94.67 E-value=0.012 Score=39.61 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.0
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+ ++. ++|||||+|...+
T Consensus 34 i~~v~i~~~~-~g~-~~g~afV~F~~~~ 59 (116)
T 2fy1_A 34 ISEVLLIKDR-TSK-SRGFAFITFENPA 59 (116)
T ss_dssp CSEEEEECST-TTT-CCCEEEEECSSHH
T ss_pred EEEEEEEECC-CCC-cccEEEEEECCHH
Confidence 5688999998 784 9999999994443
No 286
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.65 E-value=0.0062 Score=39.94 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=23.0
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.++.+++|+.+++ ++|||||+|...+.
T Consensus 35 i~~~~i~~~~~~g~-~~g~afV~f~~~~~ 62 (104)
T 1p1t_A 35 VVSFRLVYDRETGK-PKGYGFCEYQDQET 62 (104)
T ss_dssp CSEEEEEEETTTTE-EEEEEEEECSCHHH
T ss_pred eeEEEEEeCCCCCc-cceEEEEEECCHHH
Confidence 56889999999996 99999999944443
No 287
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=94.65 E-value=0.024 Score=39.33 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=23.0
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.+|.+++|+.++. +|||+||+|...+.
T Consensus 74 i~~v~i~~~~~~g~-~~G~afV~F~~~~~ 101 (135)
T 2lea_A 74 VGDVYIPRDRYTKE-SRGFAFVRFHDKRD 101 (135)
T ss_dssp CSEEECCCCSSSSS-CCSCCEEECSCHHH
T ss_pred EEEEEEEecCCCCc-cceEEEEEECCHHH
Confidence 56888999999995 99999999954443
No 288
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=94.61 E-value=0.0079 Score=39.90 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=21.4
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.+|.+++|+. ++ +||||||+|...+.
T Consensus 41 v~~v~i~~~~~-g~-~~G~afV~F~~~~~ 67 (107)
T 2lmi_A 41 ENGIHFLLNRD-GK-RRGDALIEMESEQD 67 (107)
T ss_dssp TTTEECCCCTT-ST-TCSEEEEEBSSHHH
T ss_pred cceEEEEECCC-CC-EeeEEEEEECCHHH
Confidence 46788999988 75 99999999944443
No 289
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.58 E-value=0.0081 Score=41.26 Aligned_cols=26 Identities=15% Similarity=0.011 Sum_probs=20.7
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+ +++ +||||||+|..++
T Consensus 54 v~~v~i~~d~-~gr-~~G~aFV~F~~~~ 79 (123)
T 2dha_A 54 KEGILFVTYP-DGR-PTGDAFVLFACEE 79 (123)
T ss_dssp GGGEEEEECT-TSC-EEEEEEECCSSHH
T ss_pred cceEEEEECC-CCC-EeeEEEEEECCHH
Confidence 4689999994 785 9999999994444
No 290
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=94.58 E-value=0.022 Score=39.95 Aligned_cols=27 Identities=7% Similarity=-0.154 Sum_probs=21.6
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.+|.+++|+. ++ +|||+||+|...+.
T Consensus 72 i~~v~i~~d~~-g~-srGfaFV~F~~~e~ 98 (139)
T 2hgn_A 72 PVRVHIEIGPD-GR-VTGEADVEFATHEE 98 (139)
T ss_dssp CSEEECCCSSS-SC-SSCCCEEECSHHHH
T ss_pred CeEEEEEECCC-CC-CceEEEEEeCCHHH
Confidence 45889999987 74 99999999955544
No 291
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=94.56 E-value=0.0081 Score=39.89 Aligned_cols=27 Identities=11% Similarity=-0.067 Sum_probs=20.4
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.+|.+++|.. + ++||||||+|...+.
T Consensus 54 V~~v~i~~~~~-~-~~~G~~fV~f~~~~~ 80 (104)
T 1jmt_A 54 VEEMNVCDNLG-D-HLVGNVYVKFRREED 80 (104)
T ss_dssp EEEEEECCSSS-S-SSEEEEEEEESCHHH
T ss_pred eEEEEEEeCCC-C-CccEEEEEEECCHHH
Confidence 56788888775 5 499999999944443
No 292
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.53 E-value=0.014 Score=38.54 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=22.1
Q ss_pred eeeeEEe-eccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARL-KEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~-~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.++.++ +|+.+++ +||||||+|...+.
T Consensus 36 v~~v~i~~~~~~~g~-~~g~afV~f~~~~~ 64 (109)
T 2dis_A 36 VLDVIVYASAADKMK-NRGFAFVEYESHRA 64 (109)
T ss_dssp EEEEECCSSSCTTTT-TCCEEEEEESSHHH
T ss_pred ceEEEEEccCCCCCC-cCcEEEEEecCHHH
Confidence 5678888 8888885 99999999944443
No 293
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=94.52 E-value=0.0095 Score=41.17 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=23.4
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
.+.+|.+++|+.+++ +||||||+|...+.
T Consensus 89 ~i~~v~i~~~~~~~~-~~g~afV~f~~~~~ 117 (140)
T 2ku7_A 89 DITDIQIPLDYETEK-HRGFAFVEFELAED 117 (140)
T ss_dssp CEEEEECCCCTTTCC-CCSEEEEEESCHHH
T ss_pred CEEEEEEeecCCCCC-cCcEEEEEECCHHH
Confidence 356889999999995 99999999944443
No 294
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=94.49 E-value=0.0064 Score=40.53 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=23.2
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.+++ ++|||||+|...+
T Consensus 52 ~i~~v~i~~~~~~g~-~~g~afV~F~~~~ 79 (108)
T 2jrs_A 52 RIESIQLMMDSETGR-SKGYGFITFSDSE 79 (108)
T ss_dssp CEEEEEEEEETTTTE-EEEEEEEEESCHH
T ss_pred CeEEEEEEEcCCCCc-cceEEEEEECCHH
Confidence 356899999999996 9999999994444
No 295
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=94.45 E-value=0.0076 Score=42.16 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=21.8
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.+|.+++|+. ++ +||||||+|...+.
T Consensus 74 v~~v~i~~d~~-g~-srG~aFV~F~~~e~ 100 (136)
T 2hgl_A 74 AAGVHFIYTRE-GR-QSGEAFVELGSEDD 100 (136)
T ss_dssp STTEEEEECSS-SC-EEEEEEEECSSHHH
T ss_pred eeEEEEEECCC-CC-CCeEEEEEECCHHH
Confidence 56899999998 75 99999999954443
No 296
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.43 E-value=0.014 Score=38.47 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=18.9
Q ss_pred eEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 10 IARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 10 v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
|.+++| .+++ ++|||||+|...+.
T Consensus 46 v~i~~~-~~g~-~~G~afV~F~~~~~ 69 (104)
T 1wg5_A 46 MTLPVD-FQGR-STGEAFVQFASQEI 69 (104)
T ss_dssp EECCBC-SSSC-BCSEEEEEESSHHH
T ss_pred EEEEEC-CCCC-cceEEEEEECCHHH
Confidence 778888 7885 99999999944443
No 297
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=94.39 E-value=0.017 Score=36.05 Aligned_cols=28 Identities=7% Similarity=-0.084 Sum_probs=18.8
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHHHh
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEIRE 37 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~~~ 37 (192)
+.++.++ +.+++ +||||||+|...+.+.
T Consensus 34 i~~v~i~--~~~g~-~~g~afV~f~~~~~A~ 61 (81)
T 2krb_A 34 ITNDFYP--EEDGK-TKGYIFLEYASPAHAV 61 (81)
T ss_dssp EEEEECC--CBTTB-CCCEEEEEESSHHHHH
T ss_pred eEEEEec--CCCCc-EeEEEEEEECCHHHHH
Confidence 4456655 46774 9999999995444433
No 298
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=94.37 E-value=0.012 Score=40.08 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=22.9
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.++. ++|||||+|...+
T Consensus 48 ~i~~v~i~~~~~~~~-~~g~afV~f~~~~ 75 (126)
T 3ex7_B 48 EIKNIHLNLDRRTGY-LKGYTLVEYETYK 75 (126)
T ss_dssp CEEEEECCBCTTTSS-BCSCEEEEESSHH
T ss_pred CeEEEEEEecCCCCc-cceEEEEEECCHH
Confidence 356889999999995 9999999994443
No 299
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.19 E-value=0.013 Score=39.22 Aligned_cols=24 Identities=4% Similarity=0.029 Sum_probs=18.4
Q ss_pred eEEeeccCc---CCCCCCccCCCCChhH
Q psy15152 10 IARLKEKAR---KKKGRGFGTETSTRNE 34 (192)
Q Consensus 10 v~~~~d~~~---~~k~rG~gfv~f~~~~ 34 (192)
+.++.|+.+ ++ +||||||+|...+
T Consensus 37 ~~~~~~~~~~~~g~-~~G~aFV~f~~~~ 63 (114)
T 2dnl_A 37 VDWPHKAESKSYFP-PKGYAFLLFQEES 63 (114)
T ss_dssp EECTTSSSSCCCSC-TTSEEEECCSSHH
T ss_pred EEEeecCCCCCCCC-cccEEEEEECCHH
Confidence 677778877 54 9999999994443
No 300
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.18 E-value=0.012 Score=37.52 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=21.7
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++| .+++ ++|||||+|...+
T Consensus 35 ~i~~v~i~~~-~~g~-~~g~afV~f~~~~ 61 (91)
T 2dgw_A 35 KPVAIRIVRN-AHGN-KTGYIFVDFSNEE 61 (91)
T ss_dssp CCSEEEEEEC-TTSC-EEEEEEEECSSHH
T ss_pred CceEEEEEEC-CCCC-CceEEEEEECCHH
Confidence 4668899999 7775 9999999994444
No 301
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.17 E-value=0.018 Score=37.88 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=21.9
Q ss_pred eeeeEEeec-cCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKE-KARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d-~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++| +.+++ ++||+||+|...+
T Consensus 42 i~~v~i~~~~~~~~~-~~g~afV~f~~~~ 69 (107)
T 2cph_A 42 LKTVRLPKKMTGTGA-HRGFGFVDFITKQ 69 (107)
T ss_dssp EEEEECCCCCSSSCS-SCSEEEEEESSHH
T ss_pred eEEEEEecCCCCCCC-cCceEEEEECCHH
Confidence 568889999 78885 9999999994333
No 302
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=94.11 E-value=0.0066 Score=38.39 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=23.2
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.++.+++|+.++.+++|||||+|...+.
T Consensus 31 i~~~~i~~~~~~~~~~~g~afV~f~~~~~ 59 (88)
T 4a8x_A 31 IKMIDMPVERMHPHLSKGYAYVEFENPDE 59 (88)
T ss_dssp EEEEECCEETTEEEEECSEEEEEESSHHH
T ss_pred EEEEEEEeCCCCCCCCCcEEEEEEecHHH
Confidence 56888999998875699999999944443
No 303
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.08 E-value=0.011 Score=38.58 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=21.4
Q ss_pred eeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 8 KGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 8 ~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
..|.+++|+.+++ +||||||+|...+
T Consensus 40 ~~~~~~~~~~~~~-~~g~afV~f~~~~ 65 (102)
T 2fc8_A 40 VRARIVTDRETGS-SKGFGFVDFNSEE 65 (102)
T ss_dssp SEEEEEECSSSCS-EEEEEEEECSSHH
T ss_pred eEEEEEecCCCCC-cCcEEEEEECCHH
Confidence 4788999999995 9999999994444
No 304
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=93.97 E-value=0.011 Score=39.95 Aligned_cols=27 Identities=7% Similarity=0.091 Sum_probs=21.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.+|.+++|+. ++ +||||||+|...+.
T Consensus 47 v~~v~i~~~~~-g~-~~G~afV~F~~~~~ 73 (118)
T 2db1_A 47 VAGVHFIYTRE-GR-QSGEAFVELESEDD 73 (118)
T ss_dssp GGGEEEEECSS-SC-EEEEEEEEBSSHHH
T ss_pred ceeEEEEECCC-CC-CCeEEEEEECCHHH
Confidence 46889999988 74 99999999954443
No 305
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=93.89 E-value=0.0089 Score=39.08 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=20.0
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETST 31 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~ 31 (192)
+.++.+++|+ +++ +||||||+|.
T Consensus 36 i~~v~i~~~~-~g~-~~g~afV~f~ 58 (102)
T 2xs2_A 36 VKEVKIITDR-TGV-SKGYGFVSFY 58 (102)
T ss_dssp EEEEEEEECT-TSC-EEEEEEEEES
T ss_pred eEEEEEEECC-CCC-ccceEEEEEC
Confidence 5689999998 885 9999999993
No 306
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.85 E-value=0.014 Score=38.84 Aligned_cols=25 Identities=20% Similarity=0.070 Sum_probs=21.0
Q ss_pred eeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 9 GIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 9 ~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.|.+++|+.+++ +|||+||+|...+
T Consensus 52 ~v~i~~~~~~g~-~~g~afV~f~~~~ 76 (113)
T 2cpe_A 52 MIHIYLDKETGK-PKGDATVSYEDPP 76 (113)
T ss_dssp SEECCBCTTTCS-BCSEEEEEBSSHH
T ss_pred CEEEEEeCCCCC-eeeEEEEEECCHH
Confidence 588999999995 9999999994433
No 307
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=93.85 E-value=0.017 Score=39.21 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=21.3
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+ +++ +||||||+|...+
T Consensus 62 v~~v~i~~~~-~g~-~~g~afV~f~~~~ 87 (124)
T 2kt5_A 62 LKKAAVDYDR-SGR-SLGTADVHFERRA 87 (124)
T ss_dssp CSEEEEECCS-SSS-CCSEEEEEESSHH
T ss_pred eeEEEEEECC-CCC-EeeEEEEEECCHH
Confidence 5688999999 885 9999999994444
No 308
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=93.83 E-value=0.013 Score=38.53 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=20.9
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+ ++ +++|||||+|...+
T Consensus 42 i~~v~i~~~~-~g-~~~g~afV~f~~~~ 67 (105)
T 2dnh_A 42 IDECTVLRGP-DG-SSKGCAFVKFSSHT 67 (105)
T ss_dssp EEEEEEEECS-SS-CEEEEEEEEESSHH
T ss_pred eEEEEEEECC-CC-CcCcEEEEEeCCHH
Confidence 6788999998 67 49999999994444
No 309
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.83 E-value=0.012 Score=38.27 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=21.1
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+ +++ +||||||+|...+
T Consensus 44 i~~v~i~~~~-~g~-~~g~afV~f~~~~ 69 (100)
T 2do4_A 44 VKDLRLVTNR-AGK-PKGLAYVEYENES 69 (100)
T ss_dssp EEEEEEEECT-TSC-EEEEEEEEESSHH
T ss_pred eEEEEEEECC-CCC-EEeEEEEEECCHH
Confidence 5688999998 774 9999999994433
No 310
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=92.80 E-value=0.012 Score=39.57 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=20.1
Q ss_pred eEEeeccCcCCCCCCccCCCCChhH
Q psy15152 10 IARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 10 v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
|.+++|+.+++ +||||||+|...+
T Consensus 45 v~i~~~~~~g~-~~g~afV~f~~~~ 68 (116)
T 2lcw_A 45 INLYTDRETGK-LKGEATVSFDDPP 68 (116)
Confidence 78899999995 9999999994443
No 311
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=93.57 E-value=0.046 Score=35.27 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=26.6
Q ss_pred CCCccCCCCChhHHHhhhcccCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHhhc
Q psy15152 22 GRGFGTETSTRNEIREYESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFS 80 (192)
Q Consensus 22 ~rG~gfv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 80 (192)
+||||||+|..++.+..+...+++ ....+++|.|. .+ ++.++..+|.
T Consensus 42 ~kGfaFVey~~~~eA~~Ai~~Ln~--------~~l~gr~I~V~-~A---~e~~~~~~~~ 88 (89)
T 2wbr_A 42 NQGIALCKYTTREEANKAQMALNN--------CVLANTTIFAE-SP---SENEVQSIMQ 88 (89)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTT--------EEETTEEEEEE-CC---CHHHHHHHHC
T ss_pred CCcEEEEEECCHHHHHHHHHHhcC--------CEECCcEEEEE-EC---CHHHHHHHhh
Confidence 899999999444333333323332 11234556662 22 7777877765
No 312
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=93.51 E-value=0.018 Score=40.72 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=23.8
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
.+.+|.+++|+.++. ++||+||+|...+.
T Consensus 65 ~i~~v~i~~~~~~~~-~~g~afV~f~~~~~ 93 (156)
T 1h2v_Z 65 DIKKIIMGLDKMKKT-ACGFCFVEYYSRAD 93 (156)
T ss_dssp CEEEEEEEECTTTCC-EEEEEEEEESSHHH
T ss_pred CeEEEEEEecCCCCc-cceEEEEEECCHHH
Confidence 367899999999995 99999999944443
No 313
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=93.47 E-value=0.021 Score=37.88 Aligned_cols=36 Identities=14% Similarity=-0.019 Sum_probs=24.2
Q ss_pred eeeeEEeeccCcC-CCCCCccCCCCChhH--HHhhhccc
Q psy15152 7 LKGIARLKEKARK-KKGRGFGTETSTRNE--IREYESME 42 (192)
Q Consensus 7 ~~~v~~~~d~~~~-~k~rG~gfv~f~~~~--~~~~~~~~ 42 (192)
+.+|.+++|+.+. .+++||+||+|...+ ..++..++
T Consensus 42 V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 42 VKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp EEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred EEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 5688888888763 148999999994444 33444443
No 314
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.45 E-value=0.025 Score=37.69 Aligned_cols=28 Identities=11% Similarity=-0.001 Sum_probs=20.8
Q ss_pred eeeeEEeeccCcCC--CCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKK--KGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~--k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+.+++ ++||||||+|...+
T Consensus 45 i~~v~i~~~~~~~~~~~~~G~afV~f~~~~ 74 (111)
T 2cpi_A 45 IHKVVINNSTSYAGSQGPSASAYVTYIRSE 74 (111)
T ss_dssp EEEEEEECCSSCCSSSCCCEEEEEEESSHH
T ss_pred EEEEEEecCCCcCccCCCCeEEEEEECcHH
Confidence 56888898887542 37799999994443
No 315
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.40 E-value=0.014 Score=37.84 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=21.5
Q ss_pred eeeeEEeeccC---cCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKA---RKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~---~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+. |++ ++||+||+|...+
T Consensus 32 i~~v~i~~~~~~~gt~~-~~g~afV~f~~~~ 61 (98)
T 2cpf_A 32 IKSCTISKKKNKAGVLL-SMGFGFVEYKKPE 61 (98)
T ss_dssp EEEEEEEEEECTTCCEE-EEEEEEEEESSHH
T ss_pred eEEEEEEecCCCCCCcC-cccEEEEEECCHH
Confidence 56888999887 665 9999999994444
No 316
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=93.34 E-value=0.022 Score=36.52 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=21.0
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+. + ++|||+||+|...+
T Consensus 42 ~i~~v~i~~~~~-g-~~~g~afV~f~~~~ 68 (95)
T 2ywk_A 42 PLTKVTICKDRE-G-KPKSFGFVCFKHPE 68 (95)
T ss_dssp CEEEEEEEECTT-S-CEEEEEEEEESSTH
T ss_pred CEEEEEEEECCC-C-CCceEEEEEECCHH
Confidence 356889999986 6 49999999994333
No 317
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=93.26 E-value=0.031 Score=36.78 Aligned_cols=22 Identities=9% Similarity=-0.020 Sum_probs=16.3
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCC
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETST 31 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~ 31 (192)
+.+|.++ +.+++ +||||||+|.
T Consensus 48 v~~v~i~--~~~g~-~~G~afV~f~ 69 (105)
T 2nlw_A 48 ITNDFYP--EEDGK-TKGYIFLEYA 69 (105)
T ss_dssp EEEEECC--CBTTB-SCCEEEEEEC
T ss_pred EEEEEee--CCCCC-eeeEEEEEEC
Confidence 4466666 46774 9999999993
No 318
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=93.21 E-value=0.018 Score=37.92 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=21.3
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+ ++. ++|||||+|...+
T Consensus 56 i~~v~i~~~~-~g~-~~g~afV~f~~~~ 81 (107)
T 3ulh_A 56 LKKAAVHYDR-SGR-SLGTADVHFERKA 81 (107)
T ss_dssp EEEEEEEECT-TSC-EEEEEEEEESSHH
T ss_pred eEEEEEEECC-CCC-cceEEEEEECCHH
Confidence 5689999999 784 9999999994443
No 319
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.15 E-value=0.0098 Score=38.52 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=20.7
Q ss_pred eeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 8 KGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 8 ~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.++.+++|+.+++ ++||+||+|...+
T Consensus 43 ~~~~~~~~~~~g~-~~g~afV~f~~~~ 68 (98)
T 2cqp_A 43 PGSVCLKYNEKGM-PTGEAMVAFESRD 68 (98)
T ss_dssp TTTCEEEECSSSC-EEEEEEEEESCHH
T ss_pred cceEEEEECCCCC-eeeEEEEEECCHH
Confidence 3567888999995 9999999994444
No 320
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=93.05 E-value=0.02 Score=40.99 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=23.1
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+.++. ++|||||+|....
T Consensus 98 ~i~~v~i~~~~~~g~-~~g~afV~f~~~~ 125 (165)
T 1rk8_A 98 EIKNIHLNLDRRTGF-SKGYALVEYETHK 125 (165)
T ss_dssp CEEEEEEEECTTTSS-EEEEEEEEESSHH
T ss_pred CEEEEEEEecCCCCc-EeeEEEEEECCHH
Confidence 357899999999995 9999999994433
No 321
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=92.97 E-value=0.01 Score=38.17 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=21.3
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+..+.+++|+.+++ +|||+||+|...+
T Consensus 42 i~~~~~~~~~~~g~-~~g~afV~f~~~~ 68 (95)
T 2ek1_A 42 IPGSVCLKYNEKGM-PTGEAMVAFESRD 68 (95)
T ss_dssp CTTCCEEEECTTSC-EEEEEEEEESSHH
T ss_pred ccceEEEEeCCCCC-EeeEEEEEECCHH
Confidence 34577888999985 9999999994444
No 322
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.88 E-value=0.017 Score=39.24 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=19.2
Q ss_pred eeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 9 GIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 9 ~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
++.++.|..+++ ++|||||+|...+
T Consensus 54 ~~~~~~~~~~g~-~~G~afV~F~~~~ 78 (124)
T 1wel_A 54 DSIYIAYGPNGK-ATGEGFVEFRNEA 78 (124)
T ss_dssp TTCEEEECTTSS-EEEEEEEEBSSSH
T ss_pred ceEEEEECCCCC-CCeEEEEEECCHH
Confidence 456777888885 9999999994333
No 323
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=92.57 E-value=0.033 Score=35.60 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=16.8
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEIR 36 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~~ 36 (192)
+.++.+++| +||||||+|...+.+
T Consensus 38 i~~v~i~~~------srGfaFV~F~~~~~A 61 (89)
T 3d2w_A 38 VVDVFIPKP------FRAFAFVTFADDKVA 61 (89)
T ss_dssp EEEEECCSS------CCSEEEEEESCHHHH
T ss_pred EEEEEEeeC------CCCEEEEEECCHHHH
Confidence 456666652 899999999554443
No 324
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.47 E-value=0.4 Score=40.72 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=46.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNG 122 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~ 122 (192)
...++|+ +|..+...+|.+.|+.||.+ +|+++.+. .|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 3566665 88899999999999999954 77776663 699999999999999998854
No 325
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.31 E-value=0.044 Score=35.37 Aligned_cols=24 Identities=4% Similarity=-0.110 Sum_probs=18.9
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+.+ ||||||+|...+
T Consensus 40 v~~v~i~~~~~~----rg~afV~f~~~~ 63 (96)
T 2dgx_A 40 VKSVELSPHTDY----QLKAVVQMENLQ 63 (96)
T ss_dssp EEEEEECSCCST----TCCEEEEESSHH
T ss_pred EEEEEEEeCCCC----CeEEEEEECCHH
Confidence 568889988876 789999994433
No 326
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=91.80 E-value=0.07 Score=44.52 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=23.0
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+..|.++.|+.++. ++|||||+|....
T Consensus 128 ~I~~v~i~~d~~tg~-~kG~aFV~F~~~e 155 (437)
T 3pgw_S 128 PIKRIHMVYSKRSGK-PRGYAFIEYEHER 155 (437)
T ss_pred CeeEEEeeccCCCCC-ccceEEEeeccHH
Confidence 366899999999995 9999999994433
No 327
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.58 E-value=0.037 Score=36.76 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=20.7
Q ss_pred eeeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 6 RLKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 6 ~~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.+.+|.+++|+ ++ +++||+||+|...+
T Consensus 41 ~i~~~~i~~~~-~g-~~~g~afV~f~~~~ 67 (114)
T 2do0_A 41 VVVRADILEDK-DG-KSRGIGTVTFEQSI 67 (114)
T ss_dssp CEEEEEEEECT-TC-SEEEEEEEEESSHH
T ss_pred CeEEEEEEECC-CC-CeeeEEEEEECCHH
Confidence 35688899998 46 49999999994433
No 328
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.55 E-value=0.037 Score=36.07 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=19.7
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++| ++. ++||+||+|...+
T Consensus 42 i~~v~i~~~--~g~-~~g~afV~f~~~~ 66 (103)
T 2d9p_A 42 ITSAKVMME--GGR-SKGFGFVCFSSPE 66 (103)
T ss_dssp EEEEEEEEC--SSS-EEEEEEEEESSHH
T ss_pred EEEEEEEcC--CCC-cCEEEEEEECCHH
Confidence 568888888 774 9999999994433
No 329
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=91.35 E-value=0.029 Score=38.13 Aligned_cols=35 Identities=6% Similarity=-0.095 Sum_probs=23.6
Q ss_pred eeeeEEeeccCc----CCCCCCccCCCCChhH--HHhhhccc
Q psy15152 7 LKGIARLKEKAR----KKKGRGFGTETSTRNE--IREYESME 42 (192)
Q Consensus 7 ~~~v~~~~d~~~----~~k~rG~gfv~f~~~~--~~~~~~~~ 42 (192)
+.+|.+++|+.+ ++ ++||+||+|...+ ..++..++
T Consensus 52 V~~v~I~~~~~~~~~~~~-~~G~~FV~F~~~e~A~~Ai~~Ln 92 (118)
T 3ue2_A 52 VNRVIIYQEKQGEEEDAE-IIVKIFVEFSIASETHKAIQALN 92 (118)
T ss_dssp EEEEEEEEEEESSSTTCE-EEEEEEEEESSHHHHHHHHHHHT
T ss_pred EeEEEEeecCCCcccCCc-ceEEEEEEECCHHHHHHHHHHHC
Confidence 568888988763 43 8899999994444 33444443
No 330
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=91.27 E-value=0.12 Score=35.41 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=12.6
Q ss_pred cCCCCCCccCCCCChhHH
Q psy15152 18 RKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 18 ~~~k~rG~gfv~f~~~~~ 35 (192)
++ ++||||||+|...+.
T Consensus 68 ~~-~~rG~aFV~F~~~~~ 84 (127)
T 2a3j_A 68 SD-DNSGKAYIVFATQES 84 (127)
T ss_dssp CC-SSCCCEEEEESSHHH
T ss_pred CC-CcCCEEEEEECCHHH
Confidence 56 499999999954443
No 331
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=91.26 E-value=0.07 Score=38.78 Aligned_cols=27 Identities=19% Similarity=0.072 Sum_probs=21.6
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.+|.+..|+ +++ ++|||||+|...+.
T Consensus 115 I~~v~i~~d~-~g~-~kG~afV~F~~~~~ 141 (177)
T 2f3j_A 115 LKKAAVDYDR-SGR-SLGTADVHFERRAD 141 (177)
T ss_dssp CSEEEECCCT-TSS-CSCCEEEEESCHHH
T ss_pred eEEEEEEECC-CCC-EeeEEEEEeCCHHH
Confidence 4688899999 885 99999999954443
No 332
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.20 E-value=0.086 Score=35.59 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=14.3
Q ss_pred CCCccCCCCChh--HHHhhhcccC
Q psy15152 22 GRGFGTETSTRN--EIREYESMET 43 (192)
Q Consensus 22 ~rG~gfv~f~~~--~~~~~~~~~~ 43 (192)
+||||||+|... +..++..++.
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG 85 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNG 85 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTT
T ss_pred CCCEEEEEECCHHHHHHHHHHhCC
Confidence 589999999443 3445554444
No 333
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.09 E-value=0.073 Score=34.60 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=18.7
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+.+ +||||||+|...+
T Consensus 42 i~~v~i~~~~~~---~~g~afV~f~~~~ 66 (103)
T 2cqi_A 42 CKSCKMITEHTS---NDPYCFVEFYEHR 66 (103)
T ss_dssp EEEEEEECCCCS---SCCEEEEEESSHH
T ss_pred EeEEEEEecCCC---CCCEEEEEECCHH
Confidence 567888888543 6899999994443
No 334
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.74 E-value=0.079 Score=34.29 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=17.4
Q ss_pred eeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 9 GIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 9 ~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
.|.++++ .+++ ++||+||+|...+
T Consensus 41 ~v~~~~~-~~g~-~~g~afV~f~~~~ 64 (101)
T 2fc9_A 41 FIKVPQN-QNGK-SKGYAFIEFASFE 64 (101)
T ss_dssp EEECCBC-SSSC-BCSEEEEECSSHH
T ss_pred EEEEEEC-CCCC-EeeEEEEEECCHH
Confidence 4566666 6674 9999999994443
No 335
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=90.37 E-value=0.039 Score=35.81 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=16.9
Q ss_pred EEeeccCcCCCCCCccCCCCCh
Q psy15152 11 ARLKEKARKKKGRGFGTETSTR 32 (192)
Q Consensus 11 ~~~~d~~~~~k~rG~gfv~f~~ 32 (192)
.++.|+.+++ +||||||+|..
T Consensus 47 ~~~~~~~~g~-~~g~afV~f~~ 67 (101)
T 1fj7_A 47 LAVVDVRTGT-NRKFGYVDFES 67 (101)
T ss_dssp CCCCEEEEET-TTTEEEEEESS
T ss_pred EEEecCCCCC-cCcEEEEEECC
Confidence 4567888885 99999999943
No 336
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.36 E-value=0.11 Score=34.41 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=17.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCCh
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTR 32 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~ 32 (192)
+.++.+++|+ +. +||||||+|..
T Consensus 56 i~~v~i~~~~--~~-~kg~afV~f~~ 78 (109)
T 2err_A 56 ILDVEIIFNE--RG-SKGFGFVTFEN 78 (109)
T ss_dssp CSCEEECCBT--TB-CTTEEEEECCC
T ss_pred EEEEEEEECC--CC-CceEEEEEECC
Confidence 4578888885 33 89999999933
No 337
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=89.83 E-value=0.064 Score=34.01 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=18.1
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.++.+++| ++ ++|||+||+|...+
T Consensus 35 v~~~~i~~~--~g-~~~g~afV~f~~~~ 59 (92)
T 2dgv_A 35 VLYADIKME--NG-KSKGCGVVKFESPE 59 (92)
T ss_dssp EEEEEEEES--SS-CEEEEEEEEESSHH
T ss_pred EEEEEEEcc--CC-CcceEEEEEECCHH
Confidence 456777774 66 49999999994433
No 338
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.73 E-value=0.12 Score=33.61 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=18.8
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|+. .++||+||+|...+
T Consensus 42 v~~v~i~~~~~---~~~g~afV~f~~~~ 66 (103)
T 2cq3_A 42 ILDVEIIFNER---GSKGFGFVTFENSA 66 (103)
T ss_dssp EEEEEEECCTT---TTCCEEEEEESCHH
T ss_pred eEEEEEEecCC---CCcEEEEEEECCHH
Confidence 56788888864 28999999994433
No 339
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.64 E-value=0.14 Score=33.55 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=15.2
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.++ + ++||||||+|...+
T Consensus 44 V~~v~i~-----~-~~rGfaFVeF~~~~ 65 (100)
T 2d9o_A 44 VLNLVLS-----S-KKPGTAVVEFATVK 65 (100)
T ss_dssp EEEEEEE-----S-SSSSEEEEEESCHH
T ss_pred EEEEEEc-----c-CCCCEEEEEECCHH
Confidence 4456665 2 59999999994433
No 340
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.47 E-value=0.16 Score=33.75 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=14.0
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCCh
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTR 32 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~ 32 (192)
+.+|.+++| ||||||+|..
T Consensus 43 V~~v~i~~~-------kGfaFVeF~~ 61 (105)
T 1sjq_A 43 VTNLLMLKG-------KNQAFIEMNT 61 (105)
T ss_dssp EEEEEEETT-------TTEEEEEESS
T ss_pred EEEEEEEcC-------CCEEEEEECC
Confidence 456777653 7999999943
No 341
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.38 E-value=0.088 Score=34.92 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=13.7
Q ss_pred ccCcCCCCCCccCCCCChhH
Q psy15152 15 EKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 15 d~~~~~k~rG~gfv~f~~~~ 34 (192)
+..+++ +||||||+|...+
T Consensus 60 ~~~~g~-~~g~afV~f~~~~ 78 (115)
T 2cpx_A 60 RMMTGR-MRGQAFITFPNKE 78 (115)
T ss_dssp EEECSS-SCSEEEEECSSHH
T ss_pred EcCCCc-cceEEEEEECCHH
Confidence 333774 9999999994444
No 342
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=87.84 E-value=0.14 Score=37.63 Aligned_cols=26 Identities=15% Similarity=-0.087 Sum_probs=20.0
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+++|.. + ++||||||+|...+
T Consensus 136 v~~v~i~~~~~-~-~~kG~aFVeF~~~e 161 (193)
T 2voo_A 136 VLNIQMRRTLH-K-AFKGSIFVVFDSIE 161 (193)
T ss_dssp EEEEEEEECTT-C-CEEEEEEEEESSHH
T ss_pred EEEEEEEECCC-C-CcccEEEEEECCHH
Confidence 56788888875 6 49999999994444
No 343
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.63 E-value=0.19 Score=31.50 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=15.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEI 35 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~ 35 (192)
+.++.+++| +||||||+|...+.
T Consensus 32 i~~v~i~~~------~~g~afV~f~~~~~ 54 (88)
T 1wf0_A 32 VMDVFIPKP------FRAFAFVTFADDQI 54 (88)
T ss_dssp CCEEECCSS------CCSCCEEECSCHHH
T ss_pred eeEEEEecC------CCCEEEEEECCHHH
Confidence 345555542 89999999954443
No 344
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=84.43 E-value=0.3 Score=32.78 Aligned_cols=31 Identities=13% Similarity=0.019 Sum_probs=18.6
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhccc
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE--IREYESME 42 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~ 42 (192)
+.+|.+.++. +|||+||+|...+ ..++..++
T Consensus 44 V~~v~i~~~~-----~~G~~fV~f~~~e~A~~Ai~~ln 76 (114)
T 3s6e_A 44 VIHIYVDKNS-----AQGNVYVKCPSIAAAIAAVNALH 76 (114)
T ss_dssp CSEEEECTTC-----TTCCEEEECSSHHHHHHHHHHHT
T ss_pred EEEEEEecCC-----CcEEEEEEECCHHHHHHHHHHhC
Confidence 3466665542 6899999994444 33444443
No 345
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.95 E-value=0.37 Score=31.47 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=13.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChh
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRN 33 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~ 33 (192)
+.+|.+++ .||||||+|...
T Consensus 42 v~~v~i~~-------~kg~aFVef~~~ 61 (101)
T 2cq1_A 42 VTNILMLK-------GKNQAFLELATE 61 (101)
T ss_dssp EEEEEEET-------TTTEEEEEESSH
T ss_pred EEEEEEEC-------CCCEEEEEECCH
Confidence 34565554 389999999433
No 346
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.64 E-value=0.34 Score=32.81 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=13.8
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCCh
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTR 32 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~ 32 (192)
+.+|.+++| ||||||+|..
T Consensus 58 V~~v~i~~~-------kG~AFVeF~~ 76 (119)
T 2ad9_A 58 VTNLLMLKG-------KNQAFIEMNT 76 (119)
T ss_dssp CCEEEEEGG-------GTEEEEECSC
T ss_pred EEEEEEeCC-------CCEEEEEECC
Confidence 456667654 7999999943
No 347
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.51 E-value=0.45 Score=31.03 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=15.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.+.. ++ ++|||+||+|...+
T Consensus 49 v~~~~i~~---~~-~~~g~afV~f~~~~ 72 (109)
T 1x4a_A 49 IRDIDLKN---RR-GGPPFAFVEFEDPR 72 (109)
T ss_dssp EEEEEECC---SS-SSSCCEEEEESCHH
T ss_pred eEEEEEEE---CC-CCCcEEEEEECCHH
Confidence 34555544 34 38999999994433
No 348
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.79 E-value=0.54 Score=30.98 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=10.5
Q ss_pred CCCccCCCCChhH
Q psy15152 22 GRGFGTETSTRNE 34 (192)
Q Consensus 22 ~rG~gfv~f~~~~ 34 (192)
+|||+||+|...+
T Consensus 63 ~~G~afV~f~~~~ 75 (112)
T 2dit_A 63 PDGVASVSFRDPE 75 (112)
T ss_dssp TTCEEEEECSCHH
T ss_pred CCEEEEEEECCHH
Confidence 8999999994444
No 349
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=80.95 E-value=0.55 Score=31.40 Aligned_cols=21 Identities=0% Similarity=-0.176 Sum_probs=13.4
Q ss_pred CCCccCCCCChh--HHHhhhccc
Q psy15152 22 GRGFGTETSTRN--EIREYESME 42 (192)
Q Consensus 22 ~rG~gfv~f~~~--~~~~~~~~~ 42 (192)
+||||||+|... +..++..++
T Consensus 61 ~kg~aFVef~~~~~A~~Ai~~l~ 83 (112)
T 1x4f_A 61 MKSQAFIEMETREDAMAMVDHCL 83 (112)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHhc
Confidence 789999999433 344444443
No 350
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=80.87 E-value=0.34 Score=36.02 Aligned_cols=37 Identities=5% Similarity=-0.205 Sum_probs=22.6
Q ss_pred eeeeEEeeccCc----CCCCCCccCCCCChhHHHhhhcccCC
Q psy15152 7 LKGIARLKEKAR----KKKGRGFGTETSTRNEIREYESMETD 44 (192)
Q Consensus 7 ~~~v~~~~d~~~----~~k~rG~gfv~f~~~~~~~~~~~~~~ 44 (192)
+.++.++++..+ ++ ++|++||+|...+.+..+...++
T Consensus 156 v~~~~v~~~~~~~~~~~~-~~G~~fv~f~~~~~a~~a~~~l~ 196 (222)
T 3dxb_A 156 VNRVIIYQEKQGEEEDAE-IIVKIFVEFSIASETHKAIQALN 196 (222)
T ss_dssp EEEEEEEEEECCSSTTCC-EEEEEEEEESSHHHHHHHHHHHT
T ss_pred eEEEEEecCCCCcccCcC-ceeEEEEEECCHHHHHHHHHHhc
Confidence 456777755544 45 99999999955443333333333
No 351
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=80.37 E-value=0.36 Score=32.17 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=10.9
Q ss_pred CCCCccCCCCChhH
Q psy15152 21 KGRGFGTETSTRNE 34 (192)
Q Consensus 21 k~rG~gfv~f~~~~ 34 (192)
++||||||+|...+
T Consensus 65 ~~rGfaFV~F~~~e 78 (111)
T 2jvr_A 65 DFDGTGALEFPSEE 78 (111)
T ss_dssp SSSCCEEEEESSHH
T ss_pred CCCCEEEEEECCHH
Confidence 38999999994444
No 352
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=78.40 E-value=3.9 Score=24.76 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=41.0
Q ss_pred EEEEcC-CCCCCcHHHHHHhhccCCC-----eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q psy15152 60 ILFVTG-VHEEAQEDDMHEKFSEYGE-----IKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVD 133 (192)
Q Consensus 60 ~l~V~n-Lp~~~t~~~L~~~F~~~G~-----i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~~~~g~~l~v~ 133 (192)
++|+.. --..+...+|..++..-+. |-.+.+.. .|.||+-.. +.+..+++.|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 355532 2223566777777765443 34555532 278998875 56788999999999999999988
Q ss_pred ecc
Q psy15152 134 WCF 136 (192)
Q Consensus 134 ~a~ 136 (192)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 663
No 353
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=77.67 E-value=0.58 Score=37.74 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=16.2
Q ss_pred CCCccCCCC--ChhHHHhhhcccCC
Q psy15152 22 GRGFGTETS--TRNEIREYESMETD 44 (192)
Q Consensus 22 ~rG~gfv~f--~~~~~~~~~~~~~~ 44 (192)
+||||||+| ..++..+++.+++.
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 689999999 34455666666554
No 354
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.47 E-value=0.64 Score=30.30 Aligned_cols=21 Identities=19% Similarity=0.331 Sum_probs=14.7
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.+|.++++ ||||||+|...+
T Consensus 52 i~~v~i~~~-------~g~afV~f~~~~ 72 (109)
T 1x4g_A 52 IMEIRVFPE-------KGYSFVRFSTHE 72 (109)
T ss_dssp EEEEEEETT-------TTEEEEEESSHH
T ss_pred eEEEEEeCC-------CCEEEEEECCHH
Confidence 456666664 899999994433
No 355
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=77.32 E-value=0.33 Score=33.48 Aligned_cols=18 Identities=6% Similarity=-0.029 Sum_probs=13.3
Q ss_pred cCcCCCCCCccCCCCChhH
Q psy15152 16 KARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 16 ~~~~~k~rG~gfv~f~~~~ 34 (192)
..+++ +||||||+|...+
T Consensus 86 ~~~g~-~~g~afV~f~~~~ 103 (143)
T 3egn_A 86 MKEGR-MKGQAFIGLPNEK 103 (143)
T ss_dssp EEETT-TEEEEEEECSSHH
T ss_pred ccCCC-cccEEEEEeCCHH
Confidence 35674 9999999994433
No 356
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=74.43 E-value=1.1 Score=32.09 Aligned_cols=31 Identities=10% Similarity=-0.048 Sum_probs=17.8
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH--HHhhhccc
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE--IREYESME 42 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~--~~~~~~~~ 42 (192)
+.+|.+.. ++ +||||||+|...+ ..++..++
T Consensus 73 V~~V~i~~----k~-~rgfAFVeF~d~~~A~~Ai~~Ln 105 (164)
T 1sjr_A 73 VLKIITFT----KN-NQFQALLQYADPVSAQHAKLSLD 105 (164)
T ss_dssp EEEEEEEE----SS-SCEEEEEEESCHHHHHHHHHHST
T ss_pred EEEEEEEe----CC-CCCEEEEEECCHHHHHHHHHHhC
Confidence 34555543 32 6899999994443 33444443
No 357
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.81 E-value=1.1 Score=29.23 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=14.5
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.++.+++| |||||+|...+
T Consensus 42 i~~~~i~~~--------g~afV~f~~~~ 61 (108)
T 1x4c_A 42 VCYADVYRD--------GTGVVEFVRKE 61 (108)
T ss_dssp EEEEEEETT--------TEEEEEESSHH
T ss_pred EeEEEEecC--------CEEEEEECCHH
Confidence 456777765 99999994443
No 358
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=72.98 E-value=0.87 Score=30.14 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=14.0
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhH
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNE 34 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~ 34 (192)
+.++.+++| |||||+|...+
T Consensus 43 v~~~~i~~~--------g~afV~f~~~~ 62 (115)
T 3beg_B 43 VCYADVYRD--------GTGVVEFVRKE 62 (115)
T ss_dssp EEEEEECTT--------SEEEEEESSHH
T ss_pred eEEEEEecC--------CEEEEEECCHH
Confidence 456666665 99999994433
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=66.79 E-value=1.3 Score=33.84 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=16.7
Q ss_pred eeeeEEeeccCcCCCCCCccCCCCChhHHHhh
Q psy15152 7 LKGIARLKEKARKKKGRGFGTETSTRNEIREY 38 (192)
Q Consensus 7 ~~~v~~~~d~~~~~k~rG~gfv~f~~~~~~~~ 38 (192)
+++|.++. +||||||+|...+.+..
T Consensus 170 I~~v~v~~-------~kG~AFV~F~~~~~Ae~ 194 (240)
T 3u1l_A 170 IDRIRYVE-------SKNCGFVKFKYQANAEF 194 (240)
T ss_dssp EEEEEEEG-------GGTEEEEEESSHHHHHH
T ss_pred EEEEEEEC-------CCCEEEEEeCCHHHHHH
Confidence 45676663 68999999954444333
No 360
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=50.69 E-value=42 Score=21.74 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=28.3
Q ss_pred CCCcHHHHHHhhcc-CCC---eeEE-EEeecCCCCCcceEEEEEecCHHHHHHH
Q psy15152 68 EEAQEDDMHEKFSE-YGE---IKNL-HLNLDRRTGFLKGYALVEYDSYKEASAA 116 (192)
Q Consensus 68 ~~~t~~~L~~~F~~-~G~---i~~~-~i~~~~~tg~~~g~afV~f~~~~~a~~a 116 (192)
...+..+|++-++. |+. +.-+ .+-.....|++.|||.| |++.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 44566777766654 442 2222 33444446778888876 7777776553
No 361
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=47.06 E-value=51 Score=21.39 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=28.4
Q ss_pred CCCcHHHHHHhhcc-CCC---eeEE-EEeecCCCCCcceEEEEEecCHHHHHH
Q psy15152 68 EEAQEDDMHEKFSE-YGE---IKNL-HLNLDRRTGFLKGYALVEYDSYKEASA 115 (192)
Q Consensus 68 ~~~t~~~L~~~F~~-~G~---i~~~-~i~~~~~tg~~~g~afV~f~~~~~a~~ 115 (192)
...+..+|++-++. |+. +.-+ .+-.....|++.|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45666777766554 332 2222 34444446778889876 888877764
No 362
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.22 E-value=81 Score=22.51 Aligned_cols=56 Identities=9% Similarity=0.149 Sum_probs=37.6
Q ss_pred EEEEcCCCC-C--------CcHHHHHHhh--ccCCCeeEEEEeecCCCCCcceEEEEEec-CHHHHHHHHH
Q psy15152 60 ILFVTGVHE-E--------AQEDDMHEKF--SEYGEIKNLHLNLDRRTGFLKGYALVEYD-SYKEASAARD 118 (192)
Q Consensus 60 ~l~V~nLp~-~--------~t~~~L~~~F--~~~G~i~~~~i~~~~~tg~~~g~afV~f~-~~~~a~~al~ 118 (192)
++.|-|+|. . ....+|.+.| +.|.++ .++.+.++ ..+.|++.|.|. +...-..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 455667775 1 3457888866 899776 46666664 347899999997 4555555554
No 363
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=44.21 E-value=53 Score=21.51 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=27.6
Q ss_pred CCcHHHHHHhhcc-CCC---eeEE-EEeecCCCCCcceEEEEEecCHHHHHH
Q psy15152 69 EAQEDDMHEKFSE-YGE---IKNL-HLNLDRRTGFLKGYALVEYDSYKEASA 115 (192)
Q Consensus 69 ~~t~~~L~~~F~~-~G~---i~~~-~i~~~~~tg~~~g~afV~f~~~~~a~~ 115 (192)
..+..+|++-++. |+. +.-+ .+-..-..|++.|||.| |++.+.|.+
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4566777665554 442 2222 33334346778889876 888887765
No 364
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=38.89 E-value=92 Score=21.30 Aligned_cols=46 Identities=28% Similarity=0.453 Sum_probs=29.1
Q ss_pred CCcHHHHHHhhcc-CCCe---eEE-EEeecCCCCCcceEEEEEecCHHHHHH
Q psy15152 69 EAQEDDMHEKFSE-YGEI---KNL-HLNLDRRTGFLKGYALVEYDSYKEASA 115 (192)
Q Consensus 69 ~~t~~~L~~~F~~-~G~i---~~~-~i~~~~~tg~~~g~afV~f~~~~~a~~ 115 (192)
..+..+|++-++. |+.- .-| .+-.....|++.|||.| |++.+.|..
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 4677888877765 6532 222 33344446678888887 788777765
No 365
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=40.47 E-value=8.5 Score=25.30 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=36.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeecCCCCCcceEE--EEEecCHHHHHHHHHHhCCCe
Q psy15152 58 GWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYA--LVEYDSYKEASAARDALNGTT 124 (192)
Q Consensus 58 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~a--fV~f~~~~~a~~al~~l~~~~ 124 (192)
..+|-+.. ..++++|..+..+.+ +..+.+..-...|+.. |. +=.|.+.++|.+|+..|....
T Consensus 25 ~YTLQL~a---~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 25 HYTLQLSS---SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 34454433 344566777777665 3344443332233332 22 337999999999999887544
No 366
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=31.76 E-value=13 Score=25.91 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=15.5
Q ss_pred HHHHHhhccCCCeeEEEEeecCCCCCcceEEEEEec
Q psy15152 73 DDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYD 108 (192)
Q Consensus 73 ~~L~~~F~~~G~i~~~~i~~~~~tg~~~g~afV~f~ 108 (192)
+++.++|...|.|+. ..+ .+||+||.-+
T Consensus 2 ~~~~~l~~~~G~Vkw---fn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKW---FNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEE---EET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEE---EEC-----CCCeeEEeeC
Confidence 455566776666543 333 2789999865
No 367
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=29.08 E-value=96 Score=21.79 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=28.7
Q ss_pred CcHHHHHHhhccCCCee---EEEEeecCCCCCcceEEEEE
Q psy15152 70 AQEDDMHEKFSEYGEIK---NLHLNLDRRTGFLKGYALVE 106 (192)
Q Consensus 70 ~t~~~L~~~F~~~G~i~---~~~i~~~~~tg~~~g~afV~ 106 (192)
.++++|+++-...|.+. ++.+..|..+|..+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58899999999999873 55666663489999888753
No 368
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=27.79 E-value=28 Score=22.49 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=23.4
Q ss_pred CCcHHHHHHhhcc-CCCeeEEEEe----ecCCCCCcceEEEEEecCHHHHHH
Q psy15152 69 EAQEDDMHEKFSE-YGEIKNLHLN----LDRRTGFLKGYALVEYDSYKEASA 115 (192)
Q Consensus 69 ~~t~~~L~~~F~~-~G~i~~~~i~----~~~~tg~~~g~afV~f~~~~~a~~ 115 (192)
..+..+|++-++. |+.-.++.++ ..-..|++.|||.| |++.+.|.+
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4566666665544 3321222222 22234667788876 666555443
No 369
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=26.96 E-value=1.1e+02 Score=21.30 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=27.6
Q ss_pred CCcHHHHHHhhcc-CCC---eeEE-EEeecCCCCCcceEEEEEecCHHHHHH
Q psy15152 69 EAQEDDMHEKFSE-YGE---IKNL-HLNLDRRTGFLKGYALVEYDSYKEASA 115 (192)
Q Consensus 69 ~~t~~~L~~~F~~-~G~---i~~~-~i~~~~~tg~~~g~afV~f~~~~~a~~ 115 (192)
..+..+|++-++. |+. +.-| .+-.....|.+.|||.| |++.+.|..
T Consensus 32 TpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 32 TASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp SCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 4666777776665 443 2222 23333345678888887 788777765
No 370
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=25.30 E-value=68 Score=27.86 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=40.1
Q ss_pred CCCCCCcHHHHHHhhc----cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhC
Q psy15152 65 GVHEEAQEDDMHEKFS----EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALN 121 (192)
Q Consensus 65 nLp~~~t~~~L~~~F~----~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~ 121 (192)
..+.+.+--||..+|- .+|-|+++.+-.-+ -...+.++++.|.+.++|.+++..+-
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHHH
Confidence 3455555557888774 37788888776554 33456788999999999999988763
No 371
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.34 E-value=1.4e+02 Score=18.71 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=20.2
Q ss_pred CeeEEEEeecCCCCCcceEEEEEecC
Q psy15152 84 EIKNLHLNLDRRTGFLKGYALVEYDS 109 (192)
Q Consensus 84 ~i~~~~i~~~~~tg~~~g~afV~f~~ 109 (192)
+|+++++-.-...|+-++||=|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 56777775555578999999999984
No 372
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.03 E-value=1.4e+02 Score=18.53 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=38.2
Q ss_pred EEEcCCCCCCcHHHHHHhhcc-CC-CeeEEEEeecCCCCCcceEEEEEecCHHHHHHHHH
Q psy15152 61 LFVTGVHEEAQEDDMHEKFSE-YG-EIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARD 118 (192)
Q Consensus 61 l~V~nLp~~~t~~~L~~~F~~-~G-~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~ 118 (192)
.|+--.+...+..++++.++. || .|..+..+.-+ .|. --|||......+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~--KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGE--KKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSC--EEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCc--eEEEEEcCCCCcHHHHHH
Confidence 455567888999999888776 66 56777665544 333 359999987777666544
No 373
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=21.02 E-value=87 Score=23.85 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=25.6
Q ss_pred cEEEEcCCCCCCcHHHHHHhhccCCCeeEEEEeec
Q psy15152 59 WILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLD 93 (192)
Q Consensus 59 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~~~ 93 (192)
.-+.|+|||+.++..-|.+++.. +.+....++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 45789999999999999998877 55655444433
No 374
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.42 E-value=83 Score=20.41 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=25.2
Q ss_pred eeEEEEeecCCCCCcceEEEEEecCHHHHHHHHHHhCCC
Q psy15152 85 IKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGT 123 (192)
Q Consensus 85 i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al~~l~~~ 123 (192)
|.++-...+ .+||-|||=.+..+...|++.+.+.
T Consensus 41 I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 41 IKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred eEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 555544322 4899999999999999999866544
No 375
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=20.08 E-value=86 Score=26.26 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=28.7
Q ss_pred HHHhhc--cCCCeeEEEEeecCCCCCcceEEEEEecCHHHHHHHH
Q psy15152 75 MHEKFS--EYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAAR 117 (192)
Q Consensus 75 L~~~F~--~~G~i~~~~i~~~~~tg~~~g~afV~f~~~~~a~~al 117 (192)
|..+|. .+|-|+++.+-..+ .......+++.|.+.+++.+++
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p-~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMP-KPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEE-CCSEEEEEEEEECCGGGHHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEe-cCCeEEEEEEEeCCHHHHHHHH
Confidence 455563 58889988876665 2344557789999987776644
Done!