RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15152
(192 letters)
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 80.1 bits (197), Expect = 9e-21
Identities = 67/88 (76%), Positives = 80/88 (90%)
Query: 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYK 111
PQRSVEGWILFVT +HEEAQED++ EKF +YGEIKN+HLNLDRRTGF KGYALVEY+++K
Sbjct: 1 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 60
Query: 112 EASAARDALNGTTILGQTVTVDWCFVKG 139
+A AA++ALNG I+GQT+ VDWCFVKG
Sbjct: 61 QALAAKEALNGAEIMGQTIQVDWCFVKG 88
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 64.2 bits (156), Expect = 1e-14
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L+V +H + E ++EKFS G I ++ + D T GYA V + +A A D +
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 121 NGTTILGQTVTVDW 134
N I G+ V + W
Sbjct: 63 NFDVIKGKPVRIMW 76
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 61.5 bits (149), Expect = 2e-13
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRR-TGFLKGYALVEYDSYKEASAARDA 119
+ V + +A + ++ E FS +GE+K + L TG +G+ V++ + ++A A +A
Sbjct: 11 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 70
Query: 120 L-NGTTILGQTVTVDWC 135
L + T + G+ + ++W
Sbjct: 71 LCHSTHLYGRRLVLEWA 87
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 61.6 bits (149), Expect = 2e-13
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
IL++ + + ++M++ F +YG I+ + T +G A V Y+ +A A D
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIR---VGNTPETRGTAYVVYEDIFDAKNACDH 65
Query: 120 LNGTTILGQTVTVDWCFVKGPKKVAGEQK 148
L+G + + + V + + +K
Sbjct: 66 LSGFNVCNRYLVVLYYNANRAFQKMDTKK 94
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 60.4 bits (146), Expect = 3e-13
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L+V + E+ ++E FS+ G+IK + + LD+ G+ VEY S +A A +
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 69
Query: 121 NGTTILGQTVTVDW 134
NGT + + + DW
Sbjct: 70 NGTRLDDRIIRTDW 83
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 60.0 bits (145), Expect = 4e-13
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEAS 114
S++ L+VT + +D + F +YG I ++ D+ TG +G A V Y+ +EA
Sbjct: 3 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 62
Query: 115 AARDALNGTTILG--QTVTVDW 134
A ALN G Q ++V
Sbjct: 63 EAISALNNVIPEGGSQPLSVRL 84
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 58.9 bits (142), Expect = 1e-12
Identities = 25/83 (30%), Positives = 49/83 (59%)
Query: 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
+L+V G+ EE + +H F +G+I ++ + LD T +G+A VE++ ++A+AA D
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 120 LNGTTILGQTVTVDWCFVKGPKK 142
+N + + G+T+ V+ K+
Sbjct: 67 MNESELFGRTIRVNLAKPMRIKE 89
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 58.1 bits (140), Expect = 2e-12
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEAS 114
S+ L+V+G+ + + ++ + FS+YG I + +D+ TG +G + +D EA
Sbjct: 3 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 62
Query: 115 AARDALNGTTILGQT--VTVDW 134
A LNG G T +TV +
Sbjct: 63 EAIKGLNGQKPSGATEPITVKF 84
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 58.1 bits (140), Expect = 2e-12
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRR---TGFLKGYALVEYDSYKEASAAR 117
LF+ ++ E+ + FS+ G IK+ ++ + G+ VEY ++A A
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 118 DALNGTTILGQTVTVDW 134
L G T+ G + V
Sbjct: 61 KQLQGHTVDGHKLEVRI 77
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 57.7 bits (139), Expect = 2e-12
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+F+ G+ + ++ + E F ++GE+K + D T +G+ V + A
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQ 61
Query: 121 NGTTILGQTVTVDWCF 136
+ + +T+ F
Sbjct: 62 SRHELDSKTIDPKVAF 77
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 57.7 bits (139), Expect = 3e-12
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L V + ++ + +++ F G I + D +TG+ GYA V++ S ++ A L
Sbjct: 5 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 64
Query: 121 NGTTILGQTVTVDW 134
NG T+ + + V +
Sbjct: 65 NGITVRNKRLKVSY 78
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 57.0 bits (137), Expect = 5e-12
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 48 EEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEY 107
P P L V G+ E D+ E FS+YG I ++ + D+++ +G+A V +
Sbjct: 4 ANPDPNCC-----LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 58
Query: 108 DSYKEASAARDALNGTTILGQTVTV 132
++ +A A++ NG + G+ + V
Sbjct: 59 ENVDDAKEAKERANGMELDGRRIRV 83
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 57.0 bits (137), Expect = 5e-12
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L V + + +++ F GEI++ L D+ TG GY V Y K+A A + L
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 121 NGTTILGQTVTVDW 134
NG + +T+ V +
Sbjct: 65 NGLRLQTKTIKVSY 78
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 57.3 bits (138), Expect = 6e-12
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 48 EEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEY 107
E+ Q S + ++ G+ + M + FS +G+I + + ++ Y+ V +
Sbjct: 8 EDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRF 61
Query: 108 DSYKEASAARDALNGTTILGQTVTVDW 134
+++ A+ A ++NGTTI G V W
Sbjct: 62 STHESAAHAIVSVNGTTIEGHVVKCYW 88
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 56.9 bits (137), Expect = 7e-12
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
LF+ G+ +D + E + +G +K +L D TG KGYA EY A L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 121 NGTTILGQTVTVDW 134
NG + + + V
Sbjct: 64 NGMQLGDKKLLVQR 77
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 56.7 bits (136), Expect = 1e-11
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHL--------NLDRRTGFLKGYA 103
P + ++V G+++ DD+ + F + G +K LD+ TG KG A
Sbjct: 2 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDA 61
Query: 104 LVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGPK 141
V Y+ A AA + +G G + V K P
Sbjct: 62 TVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 99
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 56.2 bits (135), Expect = 1e-11
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKE 112
+R+ + + VT + E+ +E D+ E F +G I ++L D+ TG KG+A + + ++
Sbjct: 3 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 62
Query: 113 ASAARDALNGTTILGQTVTVDW 134
A+ A ++G + V+W
Sbjct: 63 AARAIAGVSGFGYDHLILNVEW 84
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 55.8 bits (134), Expect = 2e-11
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 48 EEPGPQRSV-EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVE 106
E+P + V L + ED++ E F + + L + G KG A +E
Sbjct: 5 EDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDAL-----EIRLVSQDGKSKGIAYIE 59
Query: 107 YDSYKEASAARDALNGTTILGQTVTVDWCFVKGPKK 142
+ S +A + G I G++V++ + KG +
Sbjct: 60 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGTR 95
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 55.8 bits (134), Expect = 2e-11
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 48 EEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEY 107
E+ G R+ L+V + + E + + FS+ G K+ + + + + VE+
Sbjct: 3 EDDGQPRT-----LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCF--VEF 55
Query: 108 DSYKEASAARDALNGTTILGQTVTVDWCFVKGPKK 142
+++A+AA A+NG ILG+ V V+W +K
Sbjct: 56 YEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK 90
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 55.4 bits (133), Expect = 3e-11
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
++V G+ E+ E + E F + G + N H+ DR TG +GY VE+ S ++A A +
Sbjct: 12 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 71
Query: 121 NGTTILGQTVTVDW 134
+ + G+ + V+
Sbjct: 72 DMIKLYGKPIRVNK 85
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 54.4 bits (130), Expect = 5e-11
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLH-LNLDRRTGFLKGYALVEYDSYKEASAARDA 119
+F+ + E E +++ FS +G I + D TG KGYA + + S+ + AA +A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 120 LNGTTILGQTVTVDWCFVKGPK 141
+NG + + +TV + F K K
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSK 82
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 54.3 bits (130), Expect = 1e-10
Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 36 REYESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRR 95
+ E++ + E R LF+ G+ E E+ + + ++G++ + + D
Sbjct: 3 KTLETVPLERKKREKEQFRK-----LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA 57
Query: 96 TGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVK 138
+ +G+ V + S E AA A +I G+ V +
Sbjct: 58 SKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAR 99
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 53.7 bits (129), Expect = 2e-10
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 46 GDEEPGPQRSVEGWILFVTGVH-EEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYAL 104
G +P S +F+ ++ ++ D+ FS+YG+I ++ KG+A
Sbjct: 7 GKTDPRSMNSR----VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH--------KGFAF 54
Query: 105 VEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGPKK 142
V+Y + + A AA +G I GQ + ++ +
Sbjct: 55 VQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNR 92
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 53.2 bits (127), Expect = 2e-10
Identities = 24/85 (28%), Positives = 40/85 (47%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
LFV + + E+D+ + FS YG + LH +D T KG+A V + + A A +
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70
Query: 121 NGTTILGQTVTVDWCFVKGPKKVAG 145
+G G+ + V +K +G
Sbjct: 71 DGQVFQGRMLHVLPSTIKKEASQSG 95
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 53.1 bits (127), Expect = 2e-10
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+F + + D+ + FS G+++++ + DR + KG A VE+ ++ L
Sbjct: 21 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE-IQSVPLAIGL 79
Query: 121 NGTTILGQTVTVDW 134
G +LG + V
Sbjct: 80 TGQRLLGVPIIVQA 93
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 52.2 bits (125), Expect = 3e-10
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L V+ + + D+ E F+E+G +K ++ R+G G A V ++ +A A
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHY-DRSGRSLGTADVHFERKADALKAMKQY 61
Query: 121 NGTTILGQTVTVDW 134
NG + G+ + +
Sbjct: 62 NGVPLDGRPMNIQL 75
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 52.7 bits (126), Expect = 3e-10
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+ + ++E E+ E +YGE++ +++ D L G V++ ++A A L
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNV-CDNLGDHLVGNVYVKFRREEDAEKAVIDL 88
Query: 121 NGTTILGQTVTVDWC 135
N GQ + +
Sbjct: 89 NNRWFNGQPIHAELS 103
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 50.8 bits (121), Expect = 9e-10
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+F+ G+ + + D+ + FS++GE+ + L LD TG +G+ V + + D
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-Q 60
Query: 121 NGTTILGQTVTV 132
+ G+ +
Sbjct: 61 KEHKLNGKVIDP 72
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 51.2 bits (122), Expect = 1e-09
Identities = 18/74 (24%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L V+ + ++ D+ + F ++G+I ++ + + R KG+ V +++ +A AR+ L
Sbjct: 14 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS--KGFGFVTFENSADADRAREKL 71
Query: 121 NGTTILGQTVTVDW 134
+GT + G+ + V+
Sbjct: 72 HGTVVEGRKIEVNN 85
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 51.1 bits (122), Expect = 1e-09
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L V G+ + E D+ E FS +GE+ + + D +TG KG+ V + Y+
Sbjct: 11 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 70
Query: 121 NGTTILGQTVTVDW 134
+ I G+
Sbjct: 71 H--MIDGRWCDCKL 82
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.9 bits (121), Expect = 1e-09
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
LFV G+ + E + + FS+YG+I + + DR T +G+ V +++ +A A A+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 121 NGTTILGQTVTVDW 134
NG ++ G+ + VD
Sbjct: 68 NGKSVDGRQIRVDQ 81
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 50.8 bits (121), Expect = 1e-09
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNL--HLNLDRRTGFLKGYALVEYDSYKEASAARD 118
LF+ G+ + + +++ E+ ++ E +G+A VEY+S++ A+ AR
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 119 ALNGTTIL--GQTVTVDW 134
L I G + VDW
Sbjct: 64 KLMPGRIQLWGHQIAVDW 81
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.9 bits (121), Expect = 1e-09
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 50 PGPQRSV-EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYD 108
G Q+ EG LF+ + +E + D+ + F +G + + + +D++T K + V YD
Sbjct: 9 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 68
Query: 109 SYKEASAARDALNGTTILGQTVTVDWCFVKGPKK 142
+ A AA ++NG I + + V K K
Sbjct: 69 NPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 102
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.5 bits (120), Expect = 2e-09
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLN-----LDRRTGFLKGYALVEYDSYKEASA 115
L+V + E+ M + F+ + L L + K +A +E+ S E +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 116 ARDALNGTTILGQTVTV 132
A +G GQ++ +
Sbjct: 64 AMA-FDGIIFQGQSLKI 79
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 50.4 bits (120), Expect = 2e-09
Identities = 14/74 (18%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
++V + + + D+ + F +YG I+++ + +A VE++ ++A A
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDID---LKNRRGGPPFAFVEFEDPRDAEDAVYGR 73
Query: 121 NGTTILGQTVTVDW 134
+G G + V++
Sbjct: 74 DGYDYDGYRLRVEF 87
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 50.0 bits (119), Expect = 2e-09
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
IL+V + E+ + ++F+ R ++ YA V + + ++A A A
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAV------ERVKKIRDYAFVHFSNREDAVEAMKA 63
Query: 120 LNGTTILGQTVTVDW 134
LNG + G + V
Sbjct: 64 LNGKVLDGSPIEVTL 78
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 50.0 bits (119), Expect = 2e-09
Identities = 14/74 (18%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
LFV + + E++M + F +YG+ + ++ D+ + + ++ A A+ L
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIAKVEL 64
Query: 121 NGTTILGQTVTVDW 134
+ + G+ + V +
Sbjct: 65 DNMPLRGKQLRVRF 78
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 50.0 bits (119), Expect = 3e-09
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 48 EEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEY 107
+EP R LF+ G+ E ++ + F ++G + + + D T +G+ V Y
Sbjct: 1 KEPEQLRK-----LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 55
Query: 108 DSYKEASAARDALNGTTILGQTVTVDW 134
+ +E AA +A + G+ V
Sbjct: 56 ATVEEVDAAMNA-RPHKVDGRVVEPKR 81
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 50.0 bits (119), Expect = 3e-09
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 50 PGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDS 109
P ++S G +F+ + + +++ FS +G I + + D G+ V +++
Sbjct: 1 PSLRKSGVGN-IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF--VHFET 57
Query: 110 YKEASAARDALNGTTILGQTVTVDW 134
+ A A + +NG + + V V
Sbjct: 58 QEAAERAIEKMNGMLLNDRKVFVGR 82
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.1 bits (119), Expect = 3e-09
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 49 EPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYD 108
+P RS+ +FV + EA E+ + + FSE G + + L DR TG KGY EY
Sbjct: 1 DPAVDRSLR--SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 58
Query: 109 SYKEASAARDALNGTTILGQTVTVDWCFVKGPKKVAGEQKVGPEGGVKVLFPVI 162
+ A +A LNG G+ + VD + K+ G PVI
Sbjct: 59 DQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGA--------PVI 104
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 49.3 bits (117), Expect = 3e-09
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L++ + DD+ + F + L + GYA V+Y A A + L
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLP------LAGQVLLKSGYAFVDYPDQNWAIRAIETL 57
Query: 121 NGTTIL-GQTVTVDWCFVKGPK 141
+G L G+ + VD+ K +
Sbjct: 58 SGKVELHGKIMEVDYSVSKKLR 79
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 49.7 bits (118), Expect = 4e-09
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
++ G+ + + + G + L + ++ F Y + +E+ A
Sbjct: 22 VVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSF------ARYRTTEESKRAYVT 75
Query: 120 LNGTTIL---GQTVTVDWCFVKG 139
LNG ++ GQ +T+ FV+
Sbjct: 76 LNGKEVVDDLGQKITLYLNFVEK 98
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 48.4 bits (115), Expect = 8e-09
Identities = 12/72 (16%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+FV G+ + E+ + E F +GE++++ L +D +T +G+ + + + +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK- 60
Query: 121 NGTTILGQTVTV 132
+ +
Sbjct: 61 KYHNVGLSKCEI 72
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 48.7 bits (115), Expect = 1e-08
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYK 111
P EG +F+ + +++E+ + E ++G++K + + L T KG A ++ + +
Sbjct: 2 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 61
Query: 112 EASAARDALN------GTTILGQTVTVDW 134
A A + G + G+ + VD
Sbjct: 62 AAQKCLAAASLEAEGGGLKLDGRQLKVDL 90
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 48.2 bits (114), Expect = 2e-08
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
F+ + + E+ + E F LKG+ E++ +A +L
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SL 76
Query: 121 NGTTILGQTVTVDWCFVKGPKKVAGEQKVGPEGG 154
N ++ + + VD + ++ GP G
Sbjct: 77 NEESLGNKRIRVDVAD---QAQ---DKDSGPSSG 104
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 47.7 bits (113), Expect = 2e-08
Identities = 19/75 (25%), Positives = 30/75 (40%)
Query: 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
I+ V + D++ + F Y I G G A+V ++S EA+AA
Sbjct: 11 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 70
Query: 120 LNGTTILGQTVTVDW 134
LN I + V +
Sbjct: 71 LNDRPIGSRKVKLVL 85
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 47.7 bits (113), Expect = 2e-08
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+ V + D +H+ FS++G + + + AL++Y A A+ +L
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN----QFQALLQYADPVSAQHAKLSL 65
Query: 121 NGTTILGQTVTVDWCFVK 138
+G I T+ F K
Sbjct: 66 DGQNIYNACCTLRIDFSK 83
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 47.0 bits (111), Expect = 3e-08
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+FV G+ +D+ F ++G++ + L D+ T +G+ V ++S +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-EI 60
Query: 121 NGTTILGQTVTVDW 134
+ I + V
Sbjct: 61 HFHEINNKMVECKK 74
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 47.1 bits (111), Expect = 3e-08
Identities = 12/74 (16%), Positives = 28/74 (37%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L++T + ++ + + + R + +A ++ S ++A + L
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 121 NGTTILGQTVTVDW 134
NG I G T+
Sbjct: 64 NGLKIEGYTLVTKV 77
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 48.8 bits (115), Expect = 3e-08
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+FV G+ E+ +E + + F +YG+I+ + + DR +G +G+A V +D +
Sbjct: 100 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-IQ 158
Query: 121 NGTTILGQTVTVDW 134
T+ G V
Sbjct: 159 KYHTVNGHNCEVRK 172
Score = 44.6 bits (104), Expect = 1e-06
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
LF+ G+ E ++ + F ++G + + + D T +G+ V Y + +E AA +A
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 121 NG 122
Sbjct: 69 PH 70
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 48.0 bits (113), Expect = 4e-08
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 5/115 (4%)
Query: 27 TETSTRNEIREYESMETDVGDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIK 86
T + + ++ + + + EP R+ L V + E + + F YG I+
Sbjct: 16 TAQLQQLQQQQQQHIPPTQMNPEPDVLRN-----LMVNYIPTTVDEVQLRQLFERYGPIE 70
Query: 87 NLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVTVDWCFVKGPK 141
++ + DR T +GY V++ S A A LNG IL + + V +
Sbjct: 71 SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 47.0 bits (111), Expect = 5e-08
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 51 GPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSY 110
G Q+ +FV G+ + + + F +G+I+ + DR+TG +GY V
Sbjct: 3 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 111 KEASAARDALNGTTILGQTVTVDWCFVKGPKKVAGEQKVGPEGGV 155
A A N I G+ V+ ++ + + G GV
Sbjct: 63 AAAERACKDPNP-IIDGRKANVNLAYLGAKPR---SLQTGFAIGV 103
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 46.0 bits (108), Expect = 7e-08
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 54 RSVEGWILFVTGVHEEAQEDDM---HEKFSEYGEIKNLHLNLDRRTG---FLKGYALVEY 107
R V+ ++FV G+ + + ++ E F ++G+I + +N A V Y
Sbjct: 4 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTY 63
Query: 108 DSYKEASAARDALNGTTILGQTVTV 132
++A A +N + G+T+
Sbjct: 64 IRSEDALRAIQCVNNVVVDGRTLKA 88
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 46.2 bits (109), Expect = 8e-08
Identities = 10/75 (13%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEY-GEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
+++ ++E+ ++D++ + + L R+ ++G A V + A+ A +
Sbjct: 6 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 65
Query: 120 LNGTTILGQTVTVDW 134
+ G + + + +
Sbjct: 66 MQGFPFYDKPMRIQY 80
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 46.1 bits (109), Expect = 1e-07
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 72 EDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALNGTTILGQTVT 131
+D+ + S++G+I+ L L G A V + +EA L+G G+ +T
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHP----DGVASVSFRDPEEADYCIQTLDGRWFGGRQIT 88
Query: 132 VDW 134
Sbjct: 89 AQA 91
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 45.2 bits (106), Expect = 2e-07
Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
+T + + D+ + +N L G G ALV++ + +A +
Sbjct: 10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSE-R 68
Query: 120 LNGTTILGQTVTVDWCFVKGPKKV 143
L+ + G+ V ++ +++
Sbjct: 69 LHRKKLNGREAFVHVVTLEDMREI 92
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 44.6 bits (105), Expect = 2e-07
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 57 EGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAA 116
+G L+V G + + FS +G I +L ++ R A V Y+ + A A
Sbjct: 4 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESADQA 55
Query: 117 RDALNGTTILGQTVTVDW 134
LNGT + + V+
Sbjct: 56 VAELNGTQVESVQLKVNI 73
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 43.6 bits (102), Expect = 4e-07
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L++ G+ + D+ + YG+I + LD+ T KGY V++DS A A AL
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 121 NGTTILGQTV 130
+ + Q
Sbjct: 61 KASGVQAQMA 70
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 44.2 bits (104), Expect = 6e-07
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 66 VHEEAQEDDMHEKFSEYGEIKNLHL--NLDRRTGFLKGYALVEYDSYKEASAARDALNGT 123
E +D+ ++ S+YG +K++ + +D G VE+ S + A L G
Sbjct: 22 EEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 81
Query: 124 TILGQTVTVDWC 135
+ V +C
Sbjct: 82 KFANRVVVTKYC 93
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 44.0 bits (103), Expect = 6e-07
Identities = 10/87 (11%), Positives = 24/87 (27%), Gaps = 11/87 (12%)
Query: 61 LFVTGVHEEAQED-----DMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASA 115
L +++ + F Y + + + + A+
Sbjct: 8 LIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAAD 61
Query: 116 ARDALNGTTILGQTVTVDWCFVKGPKK 142
AR L+ T LG+ + + +
Sbjct: 62 ARLRLHKTEFLGKEMKLYFAQTLHIGS 88
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 43.6 bits (102), Expect = 6e-07
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+FV G+ E+ +E + + F +YG+I+ + + DR +G +G+A V +D ++
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVIQ 63
Query: 121 NGTTILGQTVTVD 133
T+ G V
Sbjct: 64 KYHTVNGHNCEVR 76
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 44.0 bits (103), Expect = 7e-07
Identities = 15/74 (20%), Positives = 35/74 (47%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L++ + E D+ F+ + E K + TG ++G A + + + + A A +
Sbjct: 21 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 80
Query: 121 NGTTILGQTVTVDW 134
NG + G+ + +++
Sbjct: 81 NGYKLYGKILVIEF 94
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 42.4 bits (99), Expect = 2e-06
Identities = 14/82 (17%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 55 SVEGWILFVTGVHEEA-QEDDMHEKFSEYGEIKNLHLNLDRR-TGFLKGYALVEYDSYKE 112
++EG + + + E E+ + E F +G I+ +++ ++ F A + +++
Sbjct: 1 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDS 60
Query: 113 ASAARDALNGTTILGQTVTVDW 134
A A +N + + + ++V
Sbjct: 61 AERAL-QMNRSLLGNREISVSL 81
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 42.1 bits (98), Expect = 3e-06
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
+ F + ++ +D+H FS +GEIK + + G + + KEA
Sbjct: 13 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL-----FKEKAKEALGKAKD 67
Query: 120 LNGTTILGQTVTVDWCFVKGPKKVAGEQKV 149
N + + V W ++G + +K+
Sbjct: 68 ANNGNLQLRNKEVTWEVLEGEVEKEALKKI 97
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 41.1 bits (95), Expect = 6e-06
Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Query: 46 GDEEPGPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALV 105
G S + LF+ ++ ++ SE + +D RTG + + V
Sbjct: 1 GSHMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYV 59
Query: 106 EYDSYKEASAARDALNGTTILGQTVTVDW 134
+++S ++ A + L G + G + ++
Sbjct: 60 DFESAEDLEKALE-LTGLKVFGNEIKLEK 87
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 40.5 bits (94), Expect = 9e-06
Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+ V + +++ ++H+ +Y K A V + ++A A
Sbjct: 8 ILVKNLPQDSNCQEVHDLLKDYDLK-------YCYVDRNKRTAFVTLLNGEQAQNAIQMF 60
Query: 121 NGTTILGQTVTVDW 134
+ + G+ + V
Sbjct: 61 HQYSFRGKDLIVQL 74
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 40.0 bits (93), Expect = 1e-05
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 13/94 (13%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+FV + ED++ E FS+YG++ + + +A V + + A +
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVMD-----VFIPKPFRAFAFVTFADDQIAQSL--CG 60
Query: 121 NGTTILGQTVTVDWCFVKGPKKVAGEQKVGPEGG 154
I G +V + K GP G
Sbjct: 61 EDLIIKGISVHISNAEPK------HNSNSGPSSG 88
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 39.8 bits (92), Expect = 2e-05
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 51 GPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSY 110
GP + + V+G+ D+ + E G++ + D +VEY
Sbjct: 8 GPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-------MGMVEYLRK 60
Query: 111 KEASAARDALNGTTILGQTVTVDWCFVKGPKK 142
++ A L+ T + V +
Sbjct: 61 EDMEYALRKLDDTKFRSHEGETSYIRVYPERS 92
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 39.7 bits (92), Expect = 2e-05
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 52 PQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYK 111
+S G + + G+ A E+D++ FS ++ G + G A VE+ +++
Sbjct: 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIE--IGPDGRVTGEADVEFATHE 66
Query: 112 EASAARDALNGTTILGQTVTVDWCFVKGPKK 142
+A AA A + + + V + G
Sbjct: 67 DAVAAM-AKDKANMQHRYVELFLNSTAGTSG 96
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 39.7 bits (92), Expect = 2e-05
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 51 GPQRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSY 110
G ++ L+V G+ + +F +G I+ + +A ++Y+S
Sbjct: 10 GYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS------FAYIQYESL 63
Query: 111 KEASAARDALNGTTILGQT--VTVDW 134
A AA + G + G + VD+
Sbjct: 64 DAAQAACAKMRGFPLGGPDRRLRVDF 89
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 38.2 bits (88), Expect = 7e-05
Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 53 QRSVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKE 112
+ ++ V G+ E E D+ E ++G I + + +R VE+++
Sbjct: 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQAL------VEFENIDS 63
Query: 113 ASAARDALNGTTILGQTVTVDWCFVKGPKKVAGEQKVGPEGG 154
A + + + K++ GP G
Sbjct: 64 AKECVTFAADVPVYIAGQQAFFNYST-SKRITRPGNSGPSSG 104
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 34.3 bits (78), Expect = 0.001
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+++ G +A DD+ E + G++ N KG V +DS + A
Sbjct: 9 VYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRRTLHKAFKGSIFVVFDSIESAKKFV-ET 66
Query: 121 NGTTILGQTVTVDW 134
G + + +
Sbjct: 67 PGQKYKETDLLILF 80
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 34.7 bits (79), Expect = 0.001
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 60 ILFVTGVHEEA-QEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARD 118
+L V+ ++ E + F YG+++ + + +++ ALV+ +A A
Sbjct: 4 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-----NALVQMADGNQAQLAMS 58
Query: 119 ALNGTTILGQTVTVDW 134
LNG + G+ + +
Sbjct: 59 HLNGHKLHGKPIRITL 74
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 34.5 bits (78), Expect = 0.002
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 60 ILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDA 119
++ + ++ E FS +G + A+VE+ EA A
Sbjct: 12 VILAKNLPAGTLAAEIQETFSRFGSLG------RVLLPEGGITAIVEFLEPLEARKAFRH 65
Query: 120 LNGTTILGQTVTVDW----CFVKGPKKVAGEQK 148
L + + ++W F P+K + +
Sbjct: 66 LAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHE 98
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 34.1 bits (77), Expect = 0.002
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
+ V+G+ D+ + E G++ + D E+ ++ + A L
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVV-------EFVRKEDMTYAVRKL 55
Query: 121 NGTTILGQTVTVDWCFVK 138
+ T + VK
Sbjct: 56 DNTKFRSHEGETAYIRVK 73
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 33.6 bits (76), Expect = 0.003
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 61 LFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDAL 120
L+++ + E ++ +G++ + L +G +G +S ++ A
Sbjct: 21 LYISNLPLSMDEQELENMLKPFGQVIS-TRILRDSSGTSRGVGFARMESTEKCEAVIGHF 79
Query: 121 NGTTILGQTVTVDW 134
NG I
Sbjct: 80 NGKFIKTPPGVSAP 93
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 33.3 bits (76), Expect = 0.003
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 55 SVEGWILFVTGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEAS 114
+++ L E ++ + YG I + +G LV + A
Sbjct: 21 NLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVR--------INQGQMLVTFADSHSAL 72
Query: 115 AARDALNGTTILGQTVTV 132
+ D ++G + G+ V +
Sbjct: 73 SVLD-VDGMKVKGRAVKI 89
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 30.4 bits (68), Expect = 0.036
Identities = 8/76 (10%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 60 ILFVTGV-HEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARD 118
++ + + + + +G I N + F++ + +A+
Sbjct: 10 VVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIE----MATTEDAQAAVDYY 65
Query: 119 ALNGTTILGQTVTVDW 134
+ G+ V V
Sbjct: 66 TTTPALVFGKPVRVHL 81
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 26.7 bits (59), Expect = 2.2
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 63 VTGVHEEAQ--EDDMHEKFSEYGEIKNLHLNLDRRTG 97
+T + E+ + D+ ++ Y K +R+
Sbjct: 127 ITLISNESSQLDADVRATYANYNSAKTNLAAAERKKT 163
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 26.3 bits (58), Expect = 2.5
Identities = 13/118 (11%), Positives = 36/118 (30%), Gaps = 23/118 (19%)
Query: 4 RFRLKGIARLKEKARKKKGRGFGTETSTRNEIREYESMETDVGDEEPGPQRSVEGWILFV 63
+ G + +A+++ + + + + S+ S E I +V
Sbjct: 170 KVLRVGFNGIINEAKEQLEKNRSIDPDFIKKEKFLNSVI-----------ISCEAAITYV 218
Query: 64 TGVHEEAQEDDMHEKFSEYGEIKNLHLNLDRRTGFLKGYALVEYDSYKEASAARDALN 121
++A+E + + R+ + + S + A + +A
Sbjct: 219 NRYAKKAKEIADNTS------------DAKRKAELNEIAKICSKVSGEGAKSFYEACQ 264
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus
subtilis [TaxId: 1423]}
Length = 118
Score = 24.4 bits (53), Expect = 5.7
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 10 IARLKEKARKKKGRGFGTETST-RNEIREYESMETDVGDEEPGPQRSVEG 58
IA L EKARK + G E + +I ++ + D PG VE
Sbjct: 31 IALLSEKARKAEQHGIINELAVLERKITMAKAYLLNPEDYSPGETYRVEN 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.395
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 691,937
Number of extensions: 30401
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 82
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.7 bits)