Query psy15153
Match_columns 169
No_of_seqs 281 out of 2375
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 21:57:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00690 Cation_ATPase_N: Cati 99.9 3.5E-21 7.5E-26 125.2 8.3 69 84-152 1-69 (69)
2 smart00831 Cation_ATPase_N Cat 99.8 2.4E-18 5.2E-23 110.0 7.2 62 95-156 2-63 (64)
3 PF00690 Cation_ATPase_N: Cati 99.7 6.1E-18 1.3E-22 109.8 7.6 67 8-74 1-67 (69)
4 KOG0202|consensus 99.6 6.3E-15 1.4E-19 131.3 8.9 81 83-163 3-83 (972)
5 TIGR01523 ATPase-IID_K-Na pota 99.5 2.6E-14 5.5E-19 133.5 8.3 80 82-161 5-84 (1053)
6 smart00831 Cation_ATPase_N Cat 99.5 1E-13 2.2E-18 88.4 6.6 57 19-75 2-58 (64)
7 TIGR01522 ATPase-IIA2_Ca golgi 99.5 2E-13 4.4E-18 125.9 8.7 80 82-161 2-83 (884)
8 PRK15122 magnesium-transportin 99.4 3.7E-13 8E-18 124.3 9.5 79 81-160 24-102 (903)
9 PRK10517 magnesium-transportin 99.4 8.4E-13 1.8E-17 121.9 9.1 80 80-160 45-124 (902)
10 TIGR01106 ATPase-IIC_X-K sodiu 99.4 7.9E-13 1.7E-17 123.2 8.9 75 82-156 15-89 (997)
11 TIGR01524 ATPase-IIIB_Mg magne 99.4 1.1E-12 2.5E-17 120.7 8.6 80 81-161 12-91 (867)
12 TIGR01517 ATPase-IIB_Ca plasma 99.3 1.1E-11 2.4E-16 115.1 8.9 71 88-158 43-115 (941)
13 KOG0202|consensus 99.2 1.9E-11 4.1E-16 109.5 8.2 69 6-74 2-70 (972)
14 TIGR01523 ATPase-IID_K-Na pota 99.2 7.5E-11 1.6E-15 110.5 8.4 69 5-73 4-72 (1053)
15 KOG0204|consensus 99.1 2.2E-10 4.8E-15 102.9 8.0 75 88-162 102-178 (1034)
16 PRK15122 magnesium-transportin 99.1 2.9E-10 6.2E-15 105.3 8.8 69 5-74 24-92 (903)
17 TIGR01522 ATPase-IIA2_Ca golgi 99.1 2.8E-10 6E-15 105.3 8.1 68 6-73 2-71 (884)
18 TIGR01106 ATPase-IIC_X-K sodiu 99.1 4.1E-10 8.8E-15 105.3 7.8 69 6-74 15-83 (997)
19 KOG0203|consensus 99.0 6E-10 1.3E-14 100.0 7.8 78 83-160 38-115 (1019)
20 PRK10517 magnesium-transportin 99.0 1E-09 2.2E-14 101.6 9.1 67 6-73 47-113 (902)
21 TIGR01524 ATPase-IIIB_Mg magne 99.0 1.5E-09 3.3E-14 100.2 9.0 68 5-73 12-79 (867)
22 TIGR01647 ATPase-IIIA_H plasma 99.0 6.8E-10 1.5E-14 101.2 6.6 58 103-161 1-58 (755)
23 COG0474 MgtA Cation transport 99.0 1E-09 2.2E-14 101.8 7.6 80 81-160 20-101 (917)
24 TIGR01517 ATPase-IIB_Ca plasma 98.8 1.3E-08 2.8E-13 94.8 8.0 62 12-73 43-106 (941)
25 KOG0205|consensus 98.8 1.1E-08 2.4E-13 90.1 6.7 81 84-166 18-101 (942)
26 COG0474 MgtA Cation transport 98.5 2.5E-07 5.4E-12 86.1 7.4 73 2-74 17-91 (917)
27 KOG0203|consensus 98.4 7.2E-07 1.6E-11 80.7 6.6 67 7-73 38-104 (1019)
28 TIGR01657 P-ATPase-V P-type AT 98.3 1E-06 2.2E-11 83.2 6.3 55 101-156 137-191 (1054)
29 TIGR01647 ATPase-IIIA_H plasma 98.3 1.3E-06 2.8E-11 79.9 6.0 46 27-73 1-46 (755)
30 KOG0204|consensus 98.1 9.7E-06 2.1E-10 73.7 7.2 66 12-77 102-169 (1034)
31 KOG0205|consensus 98.0 1.6E-05 3.4E-10 70.7 6.3 67 9-77 19-85 (942)
32 TIGR01657 P-ATPase-V P-type AT 97.7 6.5E-05 1.4E-09 71.2 5.4 47 25-72 137-183 (1054)
33 KOG0208|consensus 87.4 0.91 2E-05 43.0 4.6 42 101-143 158-199 (1140)
34 KOG0208|consensus 87.2 0.82 1.8E-05 43.2 4.2 63 2-66 136-198 (1140)
35 PF12368 DUF3650: Protein of u 78.9 1.7 3.7E-05 22.9 1.6 15 101-115 13-27 (28)
36 PF12534 DUF3733: Leucine-rich 69.4 4.1 8.8E-05 25.9 1.9 41 113-153 7-47 (65)
37 PRK01122 potassium-transportin 64.5 6.2 0.00013 36.3 2.9 24 135-158 29-52 (679)
38 TIGR01497 kdpB K+-transporting 63.4 6.3 0.00014 36.2 2.7 24 135-158 28-51 (675)
39 PF09925 DUF2157: Predicted me 60.6 32 0.00069 24.9 5.6 46 102-155 7-53 (145)
40 PRK14010 potassium-transportin 58.6 8.7 0.00019 35.3 2.7 25 136-160 29-53 (673)
41 PF12911 OppC_N: N-terminal TM 55.9 26 0.00055 20.8 3.8 17 127-143 2-19 (56)
42 TIGR03147 cyt_nit_nrfF cytochr 50.5 64 0.0014 23.2 5.6 49 101-152 71-120 (126)
43 PF08535 KorB: KorB domain; I 50.2 63 0.0014 21.4 5.4 79 26-114 2-84 (93)
44 PF12751 Vac7: Vacuolar segreg 50.0 28 0.0006 29.8 4.2 38 123-160 292-329 (387)
45 PRK10352 nickel transporter pe 49.9 77 0.0017 26.1 6.9 18 103-120 45-62 (314)
46 PF04835 Pox_A9: A9 protein co 47.6 50 0.0011 20.1 3.9 30 125-154 18-47 (54)
47 COG4062 MtrB Tetrahydromethano 47.4 47 0.001 23.0 4.2 41 118-158 61-101 (108)
48 TIGR02789 nickel_nikB nickel A 45.6 1E+02 0.0022 25.3 6.9 18 103-120 45-62 (314)
49 PRK10144 formate-dependent nit 42.4 1E+02 0.0022 22.2 5.6 48 101-151 71-119 (126)
50 PRK13852 type IV secretion sys 40.3 38 0.00083 27.9 3.6 33 124-156 188-220 (295)
51 PTZ00016 aquaglyceroporin; Pro 39.8 39 0.00085 27.8 3.6 50 102-151 21-71 (294)
52 PRK13892 conjugal transfer pro 39.4 41 0.00088 24.4 3.1 43 126-168 46-89 (134)
53 PF06645 SPC12: Microsomal sig 37.8 41 0.00089 21.8 2.8 14 143-156 15-28 (76)
54 PF14927 Neurensin: Neurensin 37.4 53 0.0012 24.1 3.6 25 140-164 49-73 (140)
55 PF14146 DUF4305: Domain of un 36.4 48 0.001 18.6 2.5 22 138-159 16-37 (38)
56 PF10361 DUF2434: Protein of u 36.4 34 0.00073 28.2 2.6 48 110-160 65-112 (296)
57 PRK13871 conjugal transfer pro 35.5 51 0.0011 24.0 3.1 35 126-160 37-71 (135)
58 TIGR01557 myb_SHAQKYF myb-like 35.3 78 0.0017 19.3 3.6 26 13-41 29-54 (57)
59 PRK14758 hypothetical protein; 34.0 73 0.0016 16.4 2.9 16 138-153 7-22 (27)
60 smart00540 LEM in nuclear memb 32.3 82 0.0018 18.3 3.1 23 102-124 4-26 (44)
61 PF13625 Helicase_C_3: Helicas 31.3 66 0.0014 22.7 3.2 48 9-61 40-87 (129)
62 COG2738 Predicted Zn-dependent 30.7 1E+02 0.0022 24.2 4.3 38 84-121 19-58 (226)
63 PF03918 CcmH: Cytochrome C bi 30.3 44 0.00095 24.6 2.2 52 101-155 71-123 (148)
64 PF05781 MRVI1: MRVI1 protein; 30.0 83 0.0018 28.2 4.1 20 141-160 484-503 (538)
65 COG2271 UhpC Sugar phosphate p 29.9 1E+02 0.0022 27.1 4.6 31 127-157 238-269 (448)
66 COG0601 DppB ABC-type dipeptid 29.6 1.7E+02 0.0038 24.2 5.9 17 104-120 43-59 (317)
67 PRK10914 dipeptide transporter 29.3 94 0.002 25.9 4.3 18 103-120 43-60 (339)
68 PF13625 Helicase_C_3: Helicas 28.9 75 0.0016 22.4 3.2 36 84-123 39-74 (129)
69 PRK15133 microcin C ABC transp 28.8 1E+02 0.0022 26.1 4.4 18 103-120 80-97 (364)
70 TIGR01448 recD_rel helicase, p 27.2 79 0.0017 29.3 3.8 101 12-128 76-179 (720)
71 PF05421 DUF751: Protein of un 27.2 1.1E+02 0.0023 19.1 3.2 26 131-156 25-50 (61)
72 KOG0931|consensus 27.0 1.3E+02 0.0029 26.6 4.8 127 27-160 190-342 (627)
73 PRK01631 hypothetical protein; 26.6 1.1E+02 0.0024 20.0 3.3 15 101-115 17-31 (76)
74 PF11431 Transport_MerF: Membr 25.8 88 0.0019 18.4 2.5 17 140-156 2-18 (46)
75 PRK02539 hypothetical protein; 25.8 1.1E+02 0.0024 20.4 3.3 30 101-140 18-47 (85)
76 PRK09471 oppB oligopeptide tra 25.4 1.2E+02 0.0027 24.7 4.3 18 103-120 40-57 (306)
77 PF13253 DUF4044: Protein of u 25.2 1.3E+02 0.0029 16.6 4.5 20 124-143 3-22 (35)
78 KOG0209|consensus 24.8 68 0.0015 30.7 2.8 52 88-142 149-201 (1160)
79 PRK15081 glutathione ABC trans 24.5 1.4E+02 0.0031 24.5 4.4 18 103-120 42-59 (306)
80 PF13518 HTH_28: Helix-turn-he 24.1 91 0.002 17.6 2.5 37 87-126 13-49 (52)
81 PTZ00219 Sec61 alpha subunit; 23.9 2.6E+02 0.0057 24.7 6.2 55 102-156 384-441 (474)
82 KOG3142|consensus 23.5 3.5E+02 0.0076 20.8 6.7 66 85-154 36-103 (187)
83 PRK01546 hypothetical protein; 23.3 1.4E+02 0.003 19.7 3.3 15 101-115 19-33 (79)
84 PF11697 DUF3293: Protein of u 22.9 96 0.0021 19.8 2.6 19 27-45 55-73 (73)
85 PF06341 DUF1056: Protein of u 22.7 1.8E+02 0.0038 18.3 3.6 21 133-153 6-26 (63)
86 TIGR00967 3a0501s007 preprotei 22.7 2.9E+02 0.0062 23.8 6.1 55 102-157 314-372 (410)
87 PF07069 PRRSV_2b: Porcine rep 22.6 1E+02 0.0022 19.4 2.4 13 131-143 13-25 (73)
88 COG1426 Predicted transcriptio 22.4 4.3E+02 0.0094 21.5 8.1 64 14-99 5-75 (284)
89 TIGR01652 ATPase-Plipid phosph 22.0 90 0.0019 30.3 3.2 29 129-157 17-45 (1057)
90 PF08069 Ribosomal_S13_N: Ribo 21.6 55 0.0012 20.4 1.1 35 7-41 24-59 (60)
91 COG4666 TRAP-type uncharacteri 21.5 82 0.0018 28.8 2.6 60 107-166 403-479 (642)
92 PRK08568 preprotein translocas 21.5 4.5E+02 0.0098 23.1 7.2 56 102-157 364-423 (462)
93 PF08006 DUF1700: Protein of u 21.5 3.5E+02 0.0075 20.1 6.1 30 87-122 41-70 (181)
94 PLN00183 putative aquaporin NI 21.5 2E+02 0.0043 23.4 4.7 55 94-151 12-66 (274)
95 PRK12907 secY preprotein trans 21.4 2.8E+02 0.006 24.2 5.8 54 104-157 332-388 (434)
96 PHA03093 EEV glycoprotein; Pro 21.1 1.4E+02 0.0029 23.0 3.3 9 116-125 19-27 (185)
97 PF11272 DUF3072: Protein of u 20.3 1.9E+02 0.0041 17.8 3.3 26 14-39 25-50 (57)
No 1
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=99.85 E-value=3.5e-21 Score=125.17 Aligned_cols=69 Identities=29% Similarity=0.448 Sum_probs=66.4
Q ss_pred hhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHH
Q psy15153 84 ASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFS 152 (169)
Q Consensus 84 ~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis 152 (169)
||.++++++++.++++..+|||++||++|+++||+|++++++++++|++|+++|.|||+++|+++|+||
T Consensus 1 w~~~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aailS 69 (69)
T PF00690_consen 1 WHQLSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAILS 69 (69)
T ss_dssp -TTSSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCCCCCCCHHHHHHHHHhcccccccccccCcHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 688999999999998889999999999999999999999999999999999999999999999999997
No 2
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=99.76 E-value=2.4e-18 Score=110.00 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=58.3
Q ss_pred HhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy15153 95 RLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS 156 (169)
Q Consensus 95 ~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~ 156 (169)
.++++.+.|||++||++|+++||+|++++++++++|++|+++|.|||+++|+++|++|+++|
T Consensus 2 ~l~~~~~~GLs~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~is~~~~ 63 (64)
T smart00831 2 RLQTSLESGLSSEEAARRLERYGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVLSALLG 63 (64)
T ss_pred CCCCCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 36778777999999999999999999999998999999999999999999999999999986
No 3
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=99.74 E-value=6.1e-18 Score=109.83 Aligned_cols=67 Identities=31% Similarity=0.492 Sum_probs=63.8
Q ss_pred hhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy15153 8 ASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASK 74 (169)
Q Consensus 8 ~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~ 74 (169)
||+.+++++++.++++..+|||++||++|+++||+|+++..+++++|++|+++|.||++++|++++.
T Consensus 1 w~~~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aai 67 (69)
T PF00690_consen 1 WHQLSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAI 67 (69)
T ss_dssp -TTSSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCCCCCCCHHHHHHHHHhcccccccccccCcHHHHHHHHHHhHHHHHHHHHHH
Confidence 7899999999999988899999999999999999999999999999999999999999999998875
No 4
>KOG0202|consensus
Probab=99.57 E-value=6.3e-15 Score=131.32 Aligned_cols=81 Identities=27% Similarity=0.338 Sum_probs=75.7
Q ss_pred HhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCCC
Q psy15153 83 EASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPPG 162 (169)
Q Consensus 83 ~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~~~ 162 (169)
+.|..+++|++..|++|.++|||++||..|++.||+|+++.++.+++|+++++||.|+++++|+++|+|||+++.+-+|.
T Consensus 3 ~~~~~~v~e~~~~f~t~~~~GLt~~ev~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~~~~e~~ 82 (972)
T KOG0202|consen 3 EAHAKSVSEVLAEFGTDLEEGLTSDEVTRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLADFDEPF 82 (972)
T ss_pred chhcCcHHHHHHHhCcCcccCCCHHHHHHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999998876664
Q ss_pred C
Q psy15153 163 A 163 (169)
Q Consensus 163 ~ 163 (169)
.
T Consensus 83 v 83 (972)
T KOG0202|consen 83 V 83 (972)
T ss_pred e
Confidence 3
No 5
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.52 E-value=2.6e-14 Score=133.50 Aligned_cols=80 Identities=18% Similarity=0.094 Sum_probs=75.0
Q ss_pred HHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCC
Q psy15153 82 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPP 161 (169)
Q Consensus 82 ~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~~ 161 (169)
.+||.++++++++.++++..+|||++||++|+++||+|++++++++++|++|++||.||++++|++++++|++++.+.++
T Consensus 5 ~~~~~~~~~~v~~~l~t~~~~GLs~~ea~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aails~~~~~~~~~ 84 (1053)
T TIGR01523 5 NAYFSDIADEAAEFIGTSIPEGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISFAMHDWIEG 84 (1053)
T ss_pred CchhhCCHHHHHHHhCcCcccCCCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhHHHH
Confidence 57899999999999999877899999999999999999999999999999999999999999999999999998876543
No 6
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=99.49 E-value=1e-13 Score=88.44 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=52.1
Q ss_pred HhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHHH
Q psy15153 19 RLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKE 75 (169)
Q Consensus 19 ~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~~ 75 (169)
.+++|...|||++||++|+++||+|+++.++++++|++++++|.||++++|++++..
T Consensus 2 ~l~~~~~~GLs~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~i 58 (64)
T smart00831 2 RLQTSLESGLSSEEAARRLERYGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVL 58 (64)
T ss_pred CCCCCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 467787679999999999999999999999999999999999999999999987753
No 7
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.45 E-value=2e-13 Score=125.87 Aligned_cols=80 Identities=29% Similarity=0.488 Sum_probs=74.5
Q ss_pred HHhhhcCHHHHHHHhCCCcCCCCC-HHHHHHHHHhhcCCcccCCCCChHHHHHHHHH-hhHHHHHHHHHHHHHHHhhccc
Q psy15153 82 NEASLMGAEEVAARLRVDCRSGLW-WKEAELRRQLIGYNEFCVKEEDPLWRKYIEQV-RKSVFLLFFYCFPFSTKFSVRF 159 (169)
Q Consensus 82 ~~~~~~~~~ev~~~l~~~~~~GLs-~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~-~~~~~liL~~aaiis~~~~~~~ 159 (169)
.+||.++++++++.++++..+||| ++||++|+++||+|+++.++++++|+.|++|| .||++++|++++++|+++|.+.
T Consensus 2 ~~~~~~~~~~v~~~l~t~~~~GLs~~~ev~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa~ls~~~g~~~ 81 (884)
T TIGR01522 2 KQYCELSVEETCSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMGNID 81 (884)
T ss_pred cchhhCCHHHHHHHhCcCcccCCCcHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHHHHHHHHcchh
Confidence 468999999999999999888999 99999999999999999999999999999999 8999999999999999998765
Q ss_pred CC
Q psy15153 160 PP 161 (169)
Q Consensus 160 ~~ 161 (169)
++
T Consensus 82 ~~ 83 (884)
T TIGR01522 82 DA 83 (884)
T ss_pred hH
Confidence 53
No 8
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.44 E-value=3.7e-13 Score=124.26 Aligned_cols=79 Identities=18% Similarity=0.147 Sum_probs=72.9
Q ss_pred hHHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC
Q psy15153 81 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFP 160 (169)
Q Consensus 81 ~~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~ 160 (169)
....|..+.+++++.++++. +|||++||++|+++||+|+++.++++++|+.|++||.||++++|++++++|++++.+.+
T Consensus 24 ~~~~~~~~~~~v~~~l~~~~-~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~ 102 (903)
T PRK15122 24 IAREAANSLEETLANLNTHR-QGLTEEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAAISFFTDYWLP 102 (903)
T ss_pred HHHHHhCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 35578889999999999984 79999999999999999999999999999999999999999999999999999986653
No 9
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.40 E-value=8.4e-13 Score=121.86 Aligned_cols=80 Identities=23% Similarity=0.183 Sum_probs=73.2
Q ss_pred hhHHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Q psy15153 80 TTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRF 159 (169)
Q Consensus 80 ~~~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~ 159 (169)
.....+..+.+++++.++++. +|||++||++|+++||+|+++.++++++|+.|+++|.||++++|++++++|++++.+.
T Consensus 45 ~~~~~~~~~~~~v~~~l~~~~-~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa~ls~~~~~~~ 123 (902)
T PRK10517 45 RCLKAAVMPEEELWKTFDTHP-EGLNEAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATEDLF 123 (902)
T ss_pred HHHHHHcCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHccHH
Confidence 345677889999999999986 7999999999999999999999999999999999999999999999999999987654
Q ss_pred C
Q psy15153 160 P 160 (169)
Q Consensus 160 ~ 160 (169)
+
T Consensus 124 ~ 124 (902)
T PRK10517 124 A 124 (902)
T ss_pred H
Confidence 3
No 10
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.40 E-value=7.9e-13 Score=123.25 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=70.6
Q ss_pred HHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy15153 82 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS 156 (169)
Q Consensus 82 ~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~ 156 (169)
.++|..+.+++++.++++..+|||++||++|+++||+|++++++++++|++|+++|.+|++++|++++++|+++.
T Consensus 15 ~~~~~~~~~~~~~~l~t~~~~GLs~~e~~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~l~~~~~ 89 (997)
T TIGR01106 15 MDDHKLSLDELERKYGTDLSKGLSAARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAY 89 (997)
T ss_pred CCchhCCHHHHHHHhCcCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 368999999999999999888999999999999999999999999999999999999999999999999988764
No 11
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.38 E-value=1.1e-12 Score=120.67 Aligned_cols=80 Identities=20% Similarity=0.129 Sum_probs=73.1
Q ss_pred hHHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC
Q psy15153 81 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFP 160 (169)
Q Consensus 81 ~~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~ 160 (169)
....|.++.+++++.++++. +|||++||++|+++||+|+++.++++++|+.|+++|.+|++++|++++++|++++.+.+
T Consensus 12 ~~~~~~~~~~~~~~~l~~~~-~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~a~ls~~~~~~~~ 90 (867)
T TIGR01524 12 LLKESQMGKETLLRKLGVHE-TGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLMGVSYLTDDLEA 90 (867)
T ss_pred HHHHHhCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHH
Confidence 45677889999999999985 79999999999999999999999888999999999999999999999999999887654
Q ss_pred C
Q psy15153 161 P 161 (169)
Q Consensus 161 ~ 161 (169)
+
T Consensus 91 ~ 91 (867)
T TIGR01524 91 T 91 (867)
T ss_pred H
Confidence 3
No 12
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.28 E-value=1.1e-11 Score=115.14 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=67.5
Q ss_pred CHHHHHHHhCCCcCCCCC--HHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Q psy15153 88 GAEEVAARLRVDCRSGLW--WKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVR 158 (169)
Q Consensus 88 ~~~ev~~~l~~~~~~GLs--~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~ 158 (169)
+.+++++.++++.++||| ++||++|+++||+|++++++++++|+.|++||++|++++|++++++|++++..
T Consensus 43 ~~~~~~~~l~t~~~~GLs~~~~ev~~r~~~yG~N~l~~~~~~s~~~~~~~~f~~~~~~~l~~~ails~~~~~~ 115 (941)
T TIGR01517 43 GAEGIATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTLILLSVAAVVSLVLGLP 115 (941)
T ss_pred CHHHHHHHhCcCcccCCCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhc
Confidence 789999999999888999 99999999999999999999999999999999999999999999999998854
No 13
>KOG0202|consensus
Probab=99.25 E-value=1.9e-11 Score=109.49 Aligned_cols=69 Identities=29% Similarity=0.462 Sum_probs=65.3
Q ss_pred HHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy15153 6 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASK 74 (169)
Q Consensus 6 ~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~ 74 (169)
.++|..+++|++..|++|...|||++|+..|++.||.|+++.++.++.|+.+++||.|+++++|++++.
T Consensus 2 ~~~~~~~v~e~~~~f~t~~~~GLt~~ev~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ 70 (972)
T KOG0202|consen 2 EEAHAKSVSEVLAEFGTDLEEGLTSDEVTRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAA 70 (972)
T ss_pred cchhcCcHHHHHHHhCcCcccCCCHHHHHHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999998854
No 14
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.17 E-value=7.5e-11 Score=110.49 Aligned_cols=69 Identities=22% Similarity=0.162 Sum_probs=64.5
Q ss_pred cHHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153 5 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS 73 (169)
Q Consensus 5 ~~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~ 73 (169)
..+||.++++++++.++++...|||++||++|+++||+|+++.++++++|++|++||.||++++|++++
T Consensus 4 ~~~~~~~~~~~v~~~l~t~~~~GLs~~ea~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aa 72 (1053)
T TIGR01523 4 FNAYFSDIADEAAEFIGTSIPEGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAA 72 (1053)
T ss_pred CCchhhCCHHHHHHHhCcCcccCCCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHH
Confidence 357899999999999999977899999999999999999999999999999999999999999888764
No 15
>KOG0204|consensus
Probab=99.11 E-value=2.2e-10 Score=102.88 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=71.4
Q ss_pred CHHHHHHHhCCCcCCCCCH--HHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCCC
Q psy15153 88 GAEEVAARLRVDCRSGLWW--KEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPPG 162 (169)
Q Consensus 88 ~~~ev~~~l~~~~~~GLs~--~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~~~ 162 (169)
.+++++++|++|+..||+. ++...|++-||.|.+++++++++|+..|+++.|...+||.+||++|+.+|++.++.
T Consensus 102 Gv~gL~~~LKt~~~~Gi~~~~~el~~Rr~~fG~N~~p~k~~K~Fl~fvweA~qD~TLiIL~vaAvvSl~lgi~~~g~ 178 (1034)
T KOG0204|consen 102 GVEGLCKKLKTDPNEGISGEDDELERRRKIFGSNTYPEKPPKGFLRFVWEALQDVTLIILMVAAVVSLGLGIYTPGI 178 (1034)
T ss_pred CHHHHHHHhccCcccCCCCChHHHHHHHHhcCCCCCCCCCCccHHHHHHHHhccchHHHHHHHHHHHHhhhhccCCC
Confidence 6899999999999999988 88899999999999999999999999999999999999999999999999988753
No 16
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.10 E-value=2.9e-10 Score=105.27 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=64.0
Q ss_pred cHHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy15153 5 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASK 74 (169)
Q Consensus 5 ~~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~ 74 (169)
+...|..+.+++++.++++ .+|||++||++|+++||+|+++.++++++|+.|++||+||++++|++++.
T Consensus 24 ~~~~~~~~~~~v~~~l~~~-~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ 92 (903)
T PRK15122 24 IAREAANSLEETLANLNTH-RQGLTEEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAA 92 (903)
T ss_pred HHHHHhCCHHHHHHHhCCC-CCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 4678999999999999999 58999999999999999999999999999999999999999998887754
No 17
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.09 E-value=2.8e-10 Score=105.26 Aligned_cols=68 Identities=32% Similarity=0.647 Sum_probs=63.4
Q ss_pred HHhhcCCHHHHHHHhCCCCCCCCC-HHHHHHHHHHhCCCCCCccCCchHHHHHHHHH-hhHHHHHHHHHH
Q psy15153 6 NEASLMGAEEVAARLRVDCRSGLW-WKEAELRRQLIGYNEFCVKEEDPLWRKYIEQV-RKSVFLLFFIAS 73 (169)
Q Consensus 6 ~~~~~~~~~e~~~~l~~~~~~GLs-~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf-~~p~~llL~~~~ 73 (169)
++||.++++++++.+++|..+||| ++||++|+++||+|+++.++++++|+.|++|| .||+.++|++++
T Consensus 2 ~~~~~~~~~~v~~~l~t~~~~GLs~~~ev~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa 71 (884)
T TIGR01522 2 KQYCELSVEETCSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASA 71 (884)
T ss_pred cchhhCCHHHHHHHhCcCcccCCCcHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHH
Confidence 578999999999999999888999 99999999999999999999999999999999 999999887653
No 18
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.05 E-value=4.1e-10 Score=105.27 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=63.7
Q ss_pred HHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy15153 6 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASK 74 (169)
Q Consensus 6 ~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~ 74 (169)
.++|..+.+++++.++++...|||++||++|+++||+|+++.++++++|++|+++|.+|++++|++++.
T Consensus 15 ~~~~~~~~~~~~~~l~t~~~~GLs~~e~~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~ 83 (997)
T TIGR01106 15 MDDHKLSLDELERKYGTDLSKGLSAARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAI 83 (997)
T ss_pred CCchhCCHHHHHHHhCcCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHH
Confidence 368999999999999999888999999999999999999999999999999999999999988876643
No 19
>KOG0203|consensus
Probab=99.04 E-value=6e-10 Score=100.01 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=72.1
Q ss_pred HhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC
Q psy15153 83 EASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFP 160 (169)
Q Consensus 83 ~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~ 160 (169)
+.|.++.+|++++++++..+|||.++|.+++++.|+|.+++++..+.|.+|++|+++-+.++++++|++|++.-.+.+
T Consensus 38 ~~H~~~~~eL~~r~~t~~~~Glt~~~A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a~l~~~~y~~~~ 115 (1019)
T KOG0203|consen 38 DDHKLSVDELCERYGTSVSQGLTSQEAAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGAILCFVAYGIQA 115 (1019)
T ss_pred ccccCCHHHHHHHhcCChhhcccHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Confidence 468999999999999999999999999999999999999999999999999999999999999999999987644333
No 20
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.02 E-value=1e-09 Score=101.58 Aligned_cols=67 Identities=25% Similarity=0.267 Sum_probs=61.7
Q ss_pred HHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153 6 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS 73 (169)
Q Consensus 6 ~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~ 73 (169)
.+.++.+.+++++.++++. +|||++||++|+++||+|+++.++++++|+.|++||.||++++|++++
T Consensus 47 ~~~~~~~~~~v~~~l~~~~-~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa 113 (902)
T PRK10517 47 LKAAVMPEEELWKTFDTHP-EGLNEAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILG 113 (902)
T ss_pred HHHHcCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 4568889999999999985 799999999999999999999999999999999999999999887663
No 21
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.99 E-value=1.5e-09 Score=100.15 Aligned_cols=68 Identities=22% Similarity=0.218 Sum_probs=62.3
Q ss_pred cHHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153 5 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS 73 (169)
Q Consensus 5 ~~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~ 73 (169)
+.+.|+.+.+++++.++++. +|||++||++|+++||+|+++.++++++|+.++++|.||++++|++++
T Consensus 12 ~~~~~~~~~~~~~~~l~~~~-~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~a 79 (867)
T TIGR01524 12 LLKESQMGKETLLRKLGVHE-TGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLM 79 (867)
T ss_pred HHHHHhCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHHH
Confidence 45778999999999999984 799999999999999999999999999999999999999998887664
No 22
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.99 E-value=6.8e-10 Score=101.15 Aligned_cols=58 Identities=17% Similarity=0.039 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCC
Q psy15153 103 GLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFPP 161 (169)
Q Consensus 103 GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~~ 161 (169)
|||++||++|+++||+|+++++ +++.|++|+++|.+|++++|++++++|+++|.+.++
T Consensus 1 GLs~~ea~~r~~~~G~N~~~~~-~~~~~~~~~~~~~~~~~~lL~~aa~~s~~~~~~~~~ 58 (755)
T TIGR01647 1 GLTSAEAKKRLAKYGPNELPEK-KVSPLLKFLGFFWNPLSWVMEAAAIIAIALENWVDF 58 (755)
T ss_pred CcCHHHHHHHHHhcCCCCCCCC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhhcchhhh
Confidence 8999999999999999999974 456789999999999999999999999999876553
No 23
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.99 E-value=1e-09 Score=101.80 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=73.7
Q ss_pred hHHhhhcCHH--HHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Q psy15153 81 TNEASLMGAE--EVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVR 158 (169)
Q Consensus 81 ~~~~~~~~~~--ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~ 158 (169)
...++..+.+ ++...+.++...|||++|+.+|+++||+|++++.++.++|.+|+.||.+|++++|++++++|++++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~GLs~~e~~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~~s~~~~~~ 99 (917)
T COG0474 20 SETWHPLSVERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDW 99 (917)
T ss_pred cccccccccchhhHHHhhcCCcccCCCHHHHHHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4466777777 99999988888999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q psy15153 159 FP 160 (169)
Q Consensus 159 ~~ 160 (169)
.+
T Consensus 100 ~~ 101 (917)
T COG0474 100 VD 101 (917)
T ss_pred cc
Confidence 65
No 24
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.80 E-value=1.3e-08 Score=94.84 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=57.5
Q ss_pred CHHHHHHHhCCCCCCCCC--HHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153 12 GAEEVAARLRVDCRSGLW--WKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS 73 (169)
Q Consensus 12 ~~~e~~~~l~~~~~~GLs--~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~ 73 (169)
+++++++.+++|...||| ++||++|+++||+|+++.++++++|+.+++||++|++++|++++
T Consensus 43 ~~~~~~~~l~t~~~~GLs~~~~ev~~r~~~yG~N~l~~~~~~s~~~~~~~~f~~~~~~~l~~~a 106 (941)
T TIGR01517 43 GAEGIATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTLILLSVAA 106 (941)
T ss_pred CHHHHHHHhCcCcccCCCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHH
Confidence 688999999999888999 99999999999999999999999999999999999988777654
No 25
>KOG0205|consensus
Probab=98.79 E-value=1.1e-08 Score=90.09 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=67.3
Q ss_pred hhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhh--cccC-
Q psy15153 84 ASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS--VRFP- 160 (169)
Q Consensus 84 ~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~--~~~~- 160 (169)
....+++||.++|..+. .|||.+|+++|++.||+|++.++ +++.+.+|+..|.||+.++.-+||++++.+. --.|
T Consensus 18 l~~~p~eeVfeeL~~t~-~GLt~~E~~eRlk~fG~NkleEk-ken~~lKFl~Fm~~PlswVMEaAAimA~~Lang~~~~~ 95 (942)
T KOG0205|consen 18 LEAIPIEEVFEELLCTR-EGLTSDEVEERLKIFGPNKLEEK-KESKFLKFLGFMWNPLSWVMEAAAIMAIGLANGGGRPP 95 (942)
T ss_pred cccCchhhhHHHHhcCC-CCCchHHHHHHHHhhCchhhhhh-hhhHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCCCCc
Confidence 45668999999998754 59999999999999999999954 5678999999999999999999999988774 2222
Q ss_pred CCCccc
Q psy15153 161 PGADFI 166 (169)
Q Consensus 161 ~~~~~~ 166 (169)
.+.+|+
T Consensus 96 DW~DF~ 101 (942)
T KOG0205|consen 96 DWQDFV 101 (942)
T ss_pred chhhhh
Confidence 455553
No 26
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.51 E-value=2.5e-07 Score=86.13 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=66.0
Q ss_pred CCCcHHhhcCCHH--HHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy15153 2 WLTTNEASLMGAE--EVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASK 74 (169)
Q Consensus 2 ~~~~~~~~~~~~~--e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~ 74 (169)
+.....||..+.+ ++...+.++...|||.+|+.+|+++||+|+++..+..++|..|+.||.+|+..+|+.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GLs~~e~~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~ 91 (917)
T COG0474 17 PVTSETWHPLSVERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAAL 91 (917)
T ss_pred cCCcccccccccchhhHHHhhcCCcccCCCHHHHHHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888 999999998889999999999999999999999999999999999999999998887743
No 27
>KOG0203|consensus
Probab=98.38 E-value=7.2e-07 Score=80.68 Aligned_cols=67 Identities=21% Similarity=0.352 Sum_probs=63.1
Q ss_pred HhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153 7 EASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS 73 (169)
Q Consensus 7 ~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~ 73 (169)
+.|.++.+|+.+++++|..+|||.++|.+++.+.|+|.+++++..+.|.+|++|+.+-+.++++.++
T Consensus 38 ~~H~~~~~eL~~r~~t~~~~Glt~~~A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a 104 (1019)
T KOG0203|consen 38 DDHKLSVDELCERYGTSVSQGLTSQEAAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGA 104 (1019)
T ss_pred ccccCCHHHHHHHhcCChhhcccHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999999988887664
No 28
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=98.31 E-value=1e-06 Score=83.20 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy15153 101 RSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS 156 (169)
Q Consensus 101 ~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~ 156 (169)
..|||++||++|+++||+|+++.+ .+++|+.|++++.+||.+++++++++.++-+
T Consensus 137 ~~GLs~~e~~~r~~~yG~N~i~~~-~~s~~~ll~~~~~~p~~i~~i~~~~l~~~~~ 191 (1054)
T TIGR01657 137 SNGLTTGDIAQRKAKYGKNEIEIP-VPSFLELLKEEVLHPFYVFQVFSVILWLLDE 191 (1054)
T ss_pred ccCCCHHHHHHHHHhcCCCeeecC-CCCHHHHHHHHHhchHHHHHHHHHHHHHhhh
Confidence 469999999999999999999975 5799999999999999999998877765443
No 29
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.28 E-value=1.3e-06 Score=79.93 Aligned_cols=46 Identities=22% Similarity=0.136 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153 27 GLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS 73 (169)
Q Consensus 27 GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~ 73 (169)
|||++||++|+++||+|+++. ++++.|..|+++|.+|+.++|++++
T Consensus 1 GLs~~ea~~r~~~~G~N~~~~-~~~~~~~~~~~~~~~~~~~lL~~aa 46 (755)
T TIGR01647 1 GLTSAEAKKRLAKYGPNELPE-KKVSPLLKFLGFFWNPLSWVMEAAA 46 (755)
T ss_pred CcCHHHHHHHHHhcCCCCCCC-CCCCHHHHHHHHHhchHHHHHHHHH
Confidence 899999999999999999997 4556789999999999988887664
No 30
>KOG0204|consensus
Probab=98.08 E-value=9.7e-06 Score=73.68 Aligned_cols=66 Identities=23% Similarity=0.389 Sum_probs=60.2
Q ss_pred CHHHHHHHhCCCCCCCCCH--HHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHHHHh
Q psy15153 12 GAEEVAARLRVDCRSGLWW--KEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEM 77 (169)
Q Consensus 12 ~~~e~~~~l~~~~~~GLs~--~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~~~~ 77 (169)
.++.+++.|.+|+..|++. +|...|++.||.|.+|+++++++|+..++++.|...++|..++....
T Consensus 102 Gv~gL~~~LKt~~~~Gi~~~~~el~~Rr~~fG~N~~p~k~~K~Fl~fvweA~qD~TLiIL~vaAvvSl 169 (1034)
T KOG0204|consen 102 GVEGLCKKLKTDPNEGISGEDDELERRRKIFGSNTYPEKPPKGFLRFVWEALQDVTLIILMVAAVVSL 169 (1034)
T ss_pred CHHHHHHHhccCcccCCCCChHHHHHHHHhcCCCCCCCCCCccHHHHHHHHhccchHHHHHHHHHHHH
Confidence 5889999999999999996 77889999999999999999999999999999999999988876543
No 31
>KOG0205|consensus
Probab=97.97 E-value=1.6e-05 Score=70.67 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=56.0
Q ss_pred hcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHHHHh
Q psy15153 9 SLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEM 77 (169)
Q Consensus 9 ~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~~~~ 77 (169)
...+.+++.+.|.++. .|||++|+++|++.||+|+++++ +.+.+.+|+.-|.||...+.-+|+....
T Consensus 19 ~~~p~eeVfeeL~~t~-~GLt~~E~~eRlk~fG~NkleEk-ken~~lKFl~Fm~~PlswVMEaAAimA~ 85 (942)
T KOG0205|consen 19 EAIPIEEVFEELLCTR-EGLTSDEVEERLKIFGPNKLEEK-KESKFLKFLGFMWNPLSWVMEAAAIMAI 85 (942)
T ss_pred ccCchhhhHHHHhcCC-CCCchHHHHHHHHhhCchhhhhh-hhhHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 4557889999998874 59999999999999999999955 5678899999999999887777665433
No 32
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.66 E-value=6.5e-05 Score=71.16 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHH
Q psy15153 25 RSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIA 72 (169)
Q Consensus 25 ~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~ 72 (169)
..|||++|+++|++.||+|+++.+ .+++|+.+++++.+|+.++++++
T Consensus 137 ~~GLs~~e~~~r~~~yG~N~i~~~-~~s~~~ll~~~~~~p~~i~~i~~ 183 (1054)
T TIGR01657 137 SNGLTTGDIAQRKAKYGKNEIEIP-VPSFLELLKEEVLHPFYVFQVFS 183 (1054)
T ss_pred ccCCCHHHHHHHHHhcCCCeeecC-CCCHHHHHHHHHhchHHHHHHHH
Confidence 369999999999999999999885 57999999999999998877655
No 33
>KOG0208|consensus
Probab=87.44 E-value=0.91 Score=42.97 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHH
Q psy15153 101 RSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFL 143 (169)
Q Consensus 101 ~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~l 143 (169)
..||+.+++..|+.-||+|.+.-+. ++.+..++++..+||-+
T Consensus 158 ~~gL~~~~~~~r~~iyG~N~i~l~i-k~i~~iLv~EvL~PfYl 199 (1140)
T KOG0208|consen 158 SNGLERQEIIDRRIIYGRNVISLPI-KSISQILVKEVLNPFYL 199 (1140)
T ss_pred cCCccHHHHHhHHhhcCCceeeeec-ccHHHHHHHhccchHHH
Confidence 4799999999999999999999664 67899999988888653
No 34
>KOG0208|consensus
Probab=87.18 E-value=0.82 Score=43.24 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=46.2
Q ss_pred CCCcHHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHH
Q psy15153 2 WLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVF 66 (169)
Q Consensus 2 ~~~~~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~ 66 (169)
|.+..+.........+...... ..||+.+++..|+.-||+|.+.-.. ++.+.+++++.-+|+-
T Consensus 136 w~~~~~~~~~~~~~~~~~~~~~-~~gL~~~~~~~r~~iyG~N~i~l~i-k~i~~iLv~EvL~PfY 198 (1140)
T KOG0208|consen 136 WPPFQKAEFRDDPRWYSTESYV-SNGLERQEIIDRRIIYGRNVISLPI-KSISQILVKEVLNPFY 198 (1140)
T ss_pred eccccchhhccchhhhccceec-cCCccHHHHHhHHhhcCCceeeeec-ccHHHHHHHhccchHH
Confidence 3333333334445555555555 5799999999999999999998764 5789999999888874
No 35
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=78.94 E-value=1.7 Score=22.90 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=13.0
Q ss_pred CCCCCHHHHHHHHHh
Q psy15153 101 RSGLWWKEAELRRQL 115 (169)
Q Consensus 101 ~~GLs~~ev~~r~~~ 115 (169)
++|||.+|+++|++.
T Consensus 13 eh~ls~ee~~~RL~~ 27 (28)
T PF12368_consen 13 EHGLSEEEVAERLAA 27 (28)
T ss_pred hcCCCHHHHHHHHHc
Confidence 579999999999874
No 36
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=69.39 E-value=4.1 Score=25.90 Aligned_cols=41 Identities=17% Similarity=0.389 Sum_probs=29.5
Q ss_pred HHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy15153 113 RQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFST 153 (169)
Q Consensus 113 ~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~ 153 (169)
+++|+.|...-+.-+|||-.|+..+.=.++++.++++..-+
T Consensus 7 ~~q~~~~q~~y~~lkPWwdvf~~YL~~~mlmi~v~~~~~ql 47 (65)
T PF12534_consen 7 LQQYSENQPCYRILKPWWDVFFDYLVLLMLMIFVFGGTFQL 47 (65)
T ss_pred HHHHHhhHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 45667777777778899999998887666666666655433
No 37
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=64.54 E-value=6.2 Score=36.27 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcc
Q psy15153 135 EQVRKSVFLLFFYCFPFSTKFSVR 158 (169)
Q Consensus 135 ~~~~~~~~liL~~aaiis~~~~~~ 158 (169)
.||+||++++|++++++|++++++
T Consensus 29 ~~~~~p~~~vl~~~a~ls~~~~~~ 52 (679)
T PRK01122 29 VQIRNPVMFVVEVGSILTTILTIA 52 (679)
T ss_pred HHhhChHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999854
No 38
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=63.43 E-value=6.3 Score=36.22 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcc
Q psy15153 135 EQVRKSVFLLFFYCFPFSTKFSVR 158 (169)
Q Consensus 135 ~~~~~~~~liL~~aaiis~~~~~~ 158 (169)
.||+||++++|++++++|+++++.
T Consensus 28 ~~~~~p~~~il~~~a~is~~l~~~ 51 (675)
T TIGR01497 28 AQWRNPVMFIVWVGSLLTTCITIA 51 (675)
T ss_pred HHhhChHHHHHHHHHHHHHHHHHh
Confidence 379999999999999999999764
No 39
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=60.59 E-value=32 Score=24.88 Aligned_cols=46 Identities=13% Similarity=0.000 Sum_probs=24.6
Q ss_pred CCC-CHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy15153 102 SGL-WWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKF 155 (169)
Q Consensus 102 ~GL-s~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~ 155 (169)
+|+ |++++++-++.|+.. +.+.+ ++....-.+-.+++++++++++-
T Consensus 7 ~GlI~~~q~~~i~~~~~~~----~~~~~----~~~~~l~~lGall~~~gii~fvA 53 (145)
T PF09925_consen 7 QGLITPEQAEAILAFYGER----PSRSS----WLARILLYLGALLLGLGIILFVA 53 (145)
T ss_pred CCCCCHHHHHHHHHHhhcc----ccchh----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 778888888888822 11222 22233333444555666665543
No 40
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=58.61 E-value=8.7 Score=35.32 Aligned_cols=25 Identities=0% Similarity=0.107 Sum_probs=22.2
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcccC
Q psy15153 136 QVRKSVFLLFFYCFPFSTKFSVRFP 160 (169)
Q Consensus 136 ~~~~~~~liL~~aaiis~~~~~~~~ 160 (169)
+++||++++|++++++|++++.+.+
T Consensus 29 ~~~~p~~~il~~aa~ls~~~~~~~~ 53 (673)
T PRK14010 29 MIKNPIMFVVEVGMLLALGLTIYPD 53 (673)
T ss_pred HHHChHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999987643
No 41
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=55.90 E-value=26 Score=20.80 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=11.7
Q ss_pred ChHHHHHHHHH-hhHHHH
Q psy15153 127 DPLWRKYIEQV-RKSVFL 143 (169)
Q Consensus 127 ~~~~~~~~~~~-~~~~~l 143 (169)
.+.|+.+++.| +|++.+
T Consensus 2 ~s~~~~~~~~f~~nk~a~ 19 (56)
T PF12911_consen 2 RSPWKDAWRRFRRNKLAV 19 (56)
T ss_pred CCHHHHHHHHHHhCchHH
Confidence 56788888886 566543
No 42
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=50.52 E-value=64 Score=23.23 Aligned_cols=49 Identities=10% Similarity=-0.183 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHH-HHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHH
Q psy15153 101 RSGLWWKEAELR-RQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFS 152 (169)
Q Consensus 101 ~~GLs~~ev~~r-~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis 152 (169)
.+|-|++|+... .++||.=.+-.++.++.-..+ -..|+.+++++++++.
T Consensus 71 ~~G~Sd~eI~~~~v~RYG~~Vly~Pp~~~~t~~L---W~~P~lll~~G~~~~~ 120 (126)
T TIGR03147 71 NEGKSNQQIIDFMTARFGDFVLYNPPFKWQTLLL---WLLPVLLLLLAFVLLW 120 (126)
T ss_pred HcCCCHHHHHHHHHHhcCCeEEecCCCCcchHHH---HHHHHHHHHHHHHHHH
Confidence 579999998665 458998777655433221111 2357777766665543
No 43
>PF08535 KorB: KorB domain; InterPro: IPR013741 This entry contains several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This domain includes the DNA-binding HTH motif []. ; PDB: 1R71_C.
Probab=50.21 E-value=63 Score=21.39 Aligned_cols=79 Identities=15% Similarity=0.043 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHHHHhhh----hhHHhhhcCHHHHHHHhCCCcC
Q psy15153 26 SGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEMWL----TTNEASLMGAEEVAARLRVDCR 101 (169)
Q Consensus 26 ~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~~~~~~----~~~~~~~~~~~ev~~~l~~~~~ 101 (169)
.|+|++|++.++ | +.+++...++.-+.=|--+.-+.....+... .....+....+++...+.....
T Consensus 2 ~G~tq~eIA~~l---G-------ks~s~Vs~~l~Ll~lP~~i~~~v~~g~~~~~~a~~~L~~~~~~~~~~~~~~v~~~~~ 71 (93)
T PF08535_consen 2 FGWTQEEIAKRL---G-------KSRSWVSNHLALLDLPEEIKELVRSGRISDIRALYELRKLAEKNPEEVEALVAKAKE 71 (93)
T ss_dssp TT--HHHHHHHT---T---------HHHHHHHHGGGS--HHHHHHHHTTS---HHHHHHHHHHHHH-HHHHHHHH-HSTT
T ss_pred CCCCHHHHHHHH---C-------CCHHHHHHHHHHHcCCHHHHHHHHcCCCchHHHHHHHHHHHHhCHHHHHHHHHHhcc
Confidence 488888888876 2 3455555555433222222111111111111 1122333345555555543345
Q ss_pred CCCCHHHHHHHHH
Q psy15153 102 SGLWWKEAELRRQ 114 (169)
Q Consensus 102 ~GLs~~ev~~r~~ 114 (169)
.|+|..+++.-+.
T Consensus 72 ~~~t~~~~~~~~~ 84 (93)
T PF08535_consen 72 EGLTRAAVKALRR 84 (93)
T ss_dssp S--SHHHHHHHHH
T ss_pred ccccHHHHHHHHH
Confidence 7999988865443
No 44
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=50.04 E-value=28 Score=29.83 Aligned_cols=38 Identities=16% Similarity=0.326 Sum_probs=24.7
Q ss_pred CCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC
Q psy15153 123 VKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFP 160 (169)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~ 160 (169)
....+++|.+|..++.=.++++|+++.++.|+++.-.|
T Consensus 292 ~~r~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~AttKp 329 (387)
T PF12751_consen 292 QYRQRSWFSRFASCIYLSILLLLVIGFAIGFVFATTKP 329 (387)
T ss_pred hhccccHHhhhhHHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 34567889888877654555566666666666654433
No 45
>PRK10352 nickel transporter permease NikB; Provisional
Probab=49.95 E-value=77 Score=26.15 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHhhcCCc
Q psy15153 103 GLWWKEAELRRQLIGYNE 120 (169)
Q Consensus 103 GLs~~ev~~r~~~~G~N~ 120 (169)
+.|++++++.+++||-|+
T Consensus 45 ~~~~e~~~~~~~~~Gld~ 62 (314)
T PRK10352 45 PPTPEMLASTRTMLGLDQ 62 (314)
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 478999999999999986
No 46
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=47.55 E-value=50 Score=20.06 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=24.0
Q ss_pred CCChHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy15153 125 EEDPLWRKYIEQVRKSVFLLFFYCFPFSTK 154 (169)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~liL~~aaiis~~ 154 (169)
++.++|--+++.+.+..+.++++.++++..
T Consensus 18 R~NsF~fViik~vismimylilGi~L~yis 47 (54)
T PF04835_consen 18 RPNSFWFVIIKSVISMIMYLILGIALIYIS 47 (54)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 367888888888888888888888887654
No 47
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=47.43 E-value=47 Score=22.96 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=29.7
Q ss_pred CCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Q psy15153 118 YNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVR 158 (169)
Q Consensus 118 ~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~ 158 (169)
.|.++..+..+...-++..+.--|++=|.+.|++++++++.
T Consensus 61 lnS~PgRegv~~~aG~~tna~yGfviGl~i~aLlAlil~~~ 101 (108)
T COG4062 61 LNSFPGREGVYATAGYLTNAFYGFVIGLGIMALLALILGVK 101 (108)
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777776666677777777888877754
No 48
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB. This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=45.59 E-value=1e+02 Score=25.25 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHhhcCCc
Q psy15153 103 GLWWKEAELRRQLIGYNE 120 (169)
Q Consensus 103 GLs~~ev~~r~~~~G~N~ 120 (169)
+.++++.++.+++||.|+
T Consensus 45 ~~~~~~~~~~~~~~gld~ 62 (314)
T TIGR02789 45 PPTDEAIADMRHSLGLDQ 62 (314)
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 478999999999999986
No 49
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=42.44 E-value=1e+02 Score=22.23 Aligned_cols=48 Identities=13% Similarity=-0.159 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHH-HhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHH
Q psy15153 101 RSGLWWKEAELRR-QLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPF 151 (169)
Q Consensus 101 ~~GLs~~ev~~r~-~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaii 151 (169)
..|-|++|+.... ++||.=.+-.++.++.-..+ -..|+++++++++++
T Consensus 71 ~~G~sd~eI~~~~v~RYG~~Vl~~Pp~~~~t~~L---W~~P~~lll~g~~~~ 119 (126)
T PRK10144 71 AEGKSEVEIIGWMTERYGDFVRYNPPLTGQTLVL---WALPVVLLLLMALIL 119 (126)
T ss_pred HcCCCHHHHHHHHHHhcCCeEEecCCCCcchHHH---HHHHHHHHHHHHHHH
Confidence 5799999986654 58998777655433221111 235666665554443
No 50
>PRK13852 type IV secretion system protein VirB6; Provisional
Probab=40.29 E-value=38 Score=27.95 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=27.9
Q ss_pred CCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy15153 124 KEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS 156 (169)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~ 156 (169)
+..+.++..++.|+.|..+++++++++.++.++
T Consensus 188 ~aTRrfF~~WlGQvlNYilL~vLv~av~si~~~ 220 (295)
T PRK13852 188 DRTRDIAAKWIGQLITYGILLLLLNIVATIVIL 220 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999888765
No 51
>PTZ00016 aquaglyceroporin; Provisional
Probab=39.79 E-value=39 Score=27.76 Aligned_cols=50 Identities=24% Similarity=0.270 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHhhcCCcccC-CCCChHHHHHHHHHhhHHHHHHHHHHHH
Q psy15153 102 SGLWWKEAELRRQLIGYNEFCV-KEEDPLWRKYIEQVRKSVFLLFFYCFPF 151 (169)
Q Consensus 102 ~GLs~~ev~~r~~~~G~N~l~~-~~~~~~~~~~~~~~~~~~~liL~~aaii 151 (169)
+-++++-++.-...+|.+..-+ .+.++.++.++..|...+++++++++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laEfigT~llvf~g~g~~ 71 (294)
T PTZ00016 21 NNMDEEVAEAQKRPPGGQNFWAPREYRPNVREYVAEFLGTFVLLFFGEGVV 71 (294)
T ss_pred cccCHHHhhcccCCCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4478777777777777655544 4447788899988888887777766543
No 52
>PRK13892 conjugal transfer protein TrbC; Provisional
Probab=39.39 E-value=41 Score=24.41 Aligned_cols=43 Identities=12% Similarity=-0.025 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC-CCCccccc
Q psy15153 126 EDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFP-PGADFIRK 168 (169)
Q Consensus 126 ~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~-~~~~~~~~ 168 (169)
=++++.++.+.+.+|....+-+.+++.......|. +...|.||
T Consensus 46 WE~pL~~I~~SitGPVA~~isvI~Iv~aG~~LaFGge~~gf~R~ 89 (134)
T PRK13892 46 YESWLTNLRNSVTGPVAFALSIIGIVVAGGILIFGGELNGFFRT 89 (134)
T ss_pred chhHHHHHHHHhhchHHHHHHHHHHHHhChHhhcCccccHHHHH
Confidence 34567888888888888877777777666666665 34555554
No 53
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=37.79 E-value=41 Score=21.84 Aligned_cols=14 Identities=7% Similarity=-0.005 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhh
Q psy15153 143 LLFFYCFPFSTKFS 156 (169)
Q Consensus 143 liL~~aaiis~~~~ 156 (169)
.+|.+++++|+++|
T Consensus 15 ~il~~~~iisfi~G 28 (76)
T PF06645_consen 15 YILIISAIISFIVG 28 (76)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444443333
No 54
>PF14927 Neurensin: Neurensin
Probab=37.39 E-value=53 Score=24.08 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCc
Q psy15153 140 SVFLLFFYCFPFSTKFSVRFPPGAD 164 (169)
Q Consensus 140 ~~~liL~~aaiis~~~~~~~~~~~~ 164 (169)
..-+++++++++++.+|+..|+..+
T Consensus 49 i~g~l~Ll~Gi~~l~vgY~vP~~~e 73 (140)
T PF14927_consen 49 ISGLLLLLLGIVALTVGYLVPPKIE 73 (140)
T ss_pred HHHHHHHHHHHHHHHhhcccCCcce
Confidence 3456677778888889998887544
No 55
>PF14146 DUF4305: Domain of unknown function (DUF4305)
Probab=36.44 E-value=48 Score=18.64 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHhhccc
Q psy15153 138 RKSVFLLFFYCFPFSTKFSVRF 159 (169)
Q Consensus 138 ~~~~~liL~~aaiis~~~~~~~ 159 (169)
.|.++++|++.|.+.+.++..+
T Consensus 16 w~f~t~ll~~~At~df~~~ir~ 37 (38)
T PF14146_consen 16 WDFWTILLIAFATFDFGIAIRM 37 (38)
T ss_pred ccHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999998887653
No 56
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=36.43 E-value=34 Score=28.17 Aligned_cols=48 Identities=10% Similarity=-0.066 Sum_probs=31.7
Q ss_pred HHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC
Q psy15153 110 ELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFP 160 (169)
Q Consensus 110 ~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~ 160 (169)
--.+.+||++-++.+|+-....+-+ .=...+++.++++||.++.+..|
T Consensus 65 LvnL~KHG~~~lp~eKRf~~iGRRw---qWyW~~fv~a~~~iS~f~~IDVD 112 (296)
T PF10361_consen 65 LVNLRKHGRLYLPLEKRFYPIGRRW---QWYWMLFVCACGLISLFMSIDVD 112 (296)
T ss_pred HHHHHHhhhhcCCchhcccccchhH---HHHHHHHHHHHHHHhhheeeeec
Confidence 4678899999999888544443322 22345556677888888776544
No 57
>PRK13871 conjugal transfer protein TrbC; Provisional
Probab=35.49 E-value=51 Score=24.02 Aligned_cols=35 Identities=6% Similarity=-0.087 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC
Q psy15153 126 EDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFP 160 (169)
Q Consensus 126 ~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~ 160 (169)
=++++.++.+.+.+|+...+-+.+++.......+-
T Consensus 37 WE~pLq~I~~SItGPVA~~IavIaIivaG~~liFG 71 (135)
T PRK13871 37 WESPLQQIQQSITGPVAGFIALAAVAIAGAMLIFG 71 (135)
T ss_pred cchHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhC
Confidence 34567888888888877665555555444444443
No 58
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=35.26 E-value=78 Score=19.30 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHhC
Q psy15153 13 AEEVAARLRVDCRSGLWWKEAELRRQLIG 41 (169)
Q Consensus 13 ~~e~~~~l~~~~~~GLs~~ea~~r~~~~G 41 (169)
+..|++.+..+ |||..|+...+++|-
T Consensus 29 pk~I~~~~~~~---~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 29 PKRILELMVVD---GLTRDQVASHLQKYR 54 (57)
T ss_pred hHHHHHHcCCC---CCCHHHHHHHHHHHH
Confidence 35566666553 899999999999884
No 59
>PRK14758 hypothetical protein; Provisional
Probab=34.04 E-value=73 Score=16.41 Aligned_cols=16 Identities=6% Similarity=0.386 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHH
Q psy15153 138 RKSVFLLFFYCFPFST 153 (169)
Q Consensus 138 ~~~~~liL~~aaiis~ 153 (169)
.....++|+++|+++.
T Consensus 7 FEliLivlIlCalia~ 22 (27)
T PRK14758 7 FEFILIILILCALIAA 22 (27)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677778887753
No 60
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=32.26 E-value=82 Score=18.28 Aligned_cols=23 Identities=13% Similarity=-0.089 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHhhcCCcccCC
Q psy15153 102 SGLWWKEAELRRQLIGYNEFCVK 124 (169)
Q Consensus 102 ~GLs~~ev~~r~~~~G~N~l~~~ 124 (169)
..||++|..+.+.+||-+--|-.
T Consensus 4 ~~LSd~eL~~~L~~~G~~~gPIt 26 (44)
T smart00540 4 DRLSDAELRAELKQYGLPPGPIT 26 (44)
T ss_pred hHcCHHHHHHHHHHcCCCCCCcC
Confidence 47899999999999999887743
No 61
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=31.29 E-value=66 Score=22.66 Aligned_cols=48 Identities=10% Similarity=-0.049 Sum_probs=32.4
Q ss_pred hcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHH
Q psy15153 9 SLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQV 61 (169)
Q Consensus 9 ~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf 61 (169)
+.++...+.+.+ ..|++.++.-..+++|-.|.+|..=. ..+..+.+++
T Consensus 40 yrlT~~Sl~~A~----~~G~~~e~i~~~L~~~S~~~lP~~v~-~~i~~w~~~~ 87 (129)
T PF13625_consen 40 YRLTPASLWRAA----SAGLTAEEIIEFLERYSKNPLPQNVE-QSIEDWARRY 87 (129)
T ss_pred EEECHHHHHHHH----HcCCCHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhc
Confidence 344555555555 46999999999999999999875422 3344444444
No 62
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=30.74 E-value=1e+02 Score=24.15 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=19.4
Q ss_pred hhhcCHHHHHHHh-CCCcCCCCCHHHHHHHH-HhhcCCcc
Q psy15153 84 ASLMGAEEVAARL-RVDCRSGLWWKEAELRR-QLIGYNEF 121 (169)
Q Consensus 84 ~~~~~~~ev~~~l-~~~~~~GLs~~ev~~r~-~~~G~N~l 121 (169)
|++.-+...++++ ++....|+|..|++++. ...|--.+
T Consensus 19 wAQ~kvks~y~KySkV~~s~g~TGaevAr~iLd~nGl~dV 58 (226)
T COG2738 19 WAQSKVKSTYKKYSKVRASSGLTGAEVARMILDENGLYDV 58 (226)
T ss_pred HHHHHHHHHHHHHhhccCcCCCcHHHHHHHHHhhcCCccc
Confidence 3343444444444 23334688888866554 45554433
No 63
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=30.26 E-value=44 Score=24.64 Aligned_cols=52 Identities=10% Similarity=-0.156 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHH-HHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy15153 101 RSGLWWKEAELR-RQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKF 155 (169)
Q Consensus 101 ~~GLs~~ev~~r-~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~ 155 (169)
..|.|++|+.+. .++||.=.+-.++.+..-.. -...|+++++++++++...+
T Consensus 71 ~~G~s~~eI~~~~v~rYG~~Vl~~Pp~~~~~~~---lW~~P~~~l~~g~~~~~~~~ 123 (148)
T PF03918_consen 71 AEGKSDEEIIDYFVERYGEFVLYEPPFKGFTWL---LWLGPFLLLLLGGALLFRRL 123 (148)
T ss_dssp HHT--HHHHHHHHHHHHTTT-EES--S-----------------------------
T ss_pred HcCCCHHHHHHHHHHhcCcceeecCCCCccHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 469999998654 56999887776554432111 12356666666655554444
No 64
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=29.97 E-value=83 Score=28.21 Aligned_cols=20 Identities=20% Similarity=0.158 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhcccC
Q psy15153 141 VFLLFFYCFPFSTKFSVRFP 160 (169)
Q Consensus 141 ~~liL~~aaiis~~~~~~~~ 160 (169)
+++++++|+++||++|..|.
T Consensus 484 vAliVLLAaLlSfLtg~~fq 503 (538)
T PF05781_consen 484 VALIVLLAALLSFLTGLFFQ 503 (538)
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 34566778889999986655
No 65
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=29.90 E-value=1e+02 Score=27.06 Aligned_cols=31 Identities=10% Similarity=0.262 Sum_probs=24.1
Q ss_pred ChHHHHHHHH-HhhHHHHHHHHHHHHHHHhhc
Q psy15153 127 DPLWRKYIEQ-VRKSVFLLFFYCFPFSTKFSV 157 (169)
Q Consensus 127 ~~~~~~~~~~-~~~~~~liL~~aaiis~~~~~ 157 (169)
-+.|+.|++. ++||.++++.++-+.-+++..
T Consensus 238 ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~ 269 (448)
T COG2271 238 LTAWQIFVKYVLKNKLIWLLALANVFVYVVRY 269 (448)
T ss_pred ccHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 6788888877 699999999988766555543
No 66
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=29.58 E-value=1.7e+02 Score=24.24 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHhhcCCc
Q psy15153 104 LWWKEAELRRQLIGYNE 120 (169)
Q Consensus 104 Ls~~ev~~r~~~~G~N~ 120 (169)
.++++.++.+++||.|+
T Consensus 43 ~~~e~~~~l~~~~GLd~ 59 (317)
T COG0601 43 ATPEAIEALREEYGLDK 59 (317)
T ss_pred CCHHHHHHHHHHhCCCC
Confidence 67888888899999754
No 67
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=29.27 E-value=94 Score=25.92 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHhhcCCc
Q psy15153 103 GLWWKEAELRRQLIGYNE 120 (169)
Q Consensus 103 GLs~~ev~~r~~~~G~N~ 120 (169)
+.|+++.++.+++||-|+
T Consensus 43 ~~~~e~~~~~~~~~GLd~ 60 (339)
T PRK10914 43 GISPERHAQLLAELGLDK 60 (339)
T ss_pred CCCHHHHHHHHHHHCCCC
Confidence 578999999999999885
No 68
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=28.90 E-value=75 Score=22.36 Aligned_cols=36 Identities=11% Similarity=-0.096 Sum_probs=28.6
Q ss_pred hhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccC
Q psy15153 84 ASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCV 123 (169)
Q Consensus 84 ~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~ 123 (169)
-+.++...+...+. .|++.+++.+.+++|-.|.+++
T Consensus 39 ~yrlT~~Sl~~A~~----~G~~~e~i~~~L~~~S~~~lP~ 74 (129)
T PF13625_consen 39 VYRLTPASLWRAAS----AGLTAEEIIEFLERYSKNPLPQ 74 (129)
T ss_pred EEEECHHHHHHHHH----cCCCHHHHHHHHHHHcCCCCCH
Confidence 35567777777663 5999999999999999998873
No 69
>PRK15133 microcin C ABC transporter permease YejB; Provisional
Probab=28.79 E-value=1e+02 Score=26.15 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHhhcCCc
Q psy15153 103 GLWWKEAELRRQLIGYNE 120 (169)
Q Consensus 103 GLs~~ev~~r~~~~G~N~ 120 (169)
+.++++.++.+++||.|+
T Consensus 80 ~~~~e~~~~~~~~~GLd~ 97 (364)
T PRK15133 80 GLDPEVIAEITHRYGFDK 97 (364)
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 578999999999999984
No 70
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=27.25 E-value=79 Score=29.34 Aligned_cols=101 Identities=21% Similarity=0.133 Sum_probs=56.1
Q ss_pred CHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHH--HHHHHHhhhhhHHhhhc-C
Q psy15153 12 GAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFF--IASKEEMWLTTNEASLM-G 88 (169)
Q Consensus 12 ~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~--~~~~~~~~~~~~~~~~~-~ 88 (169)
+.+.+.+.|.+..-.|+-..-|+.-.+.||.+.+..-.. +|-.+.-+ +.......+ ...|... .
T Consensus 76 ~~~~i~~yL~s~~~~GIG~~~A~~iv~~fg~~~~~~i~~------------~~~~L~~v~gi~~~~~~~i-~~~~~~~~~ 142 (720)
T TIGR01448 76 SKEGIVAYLSSRSIKGVGKKLAQRIVKTFGEAAFDVLDD------------DPEKLLEVPGISKANLEKF-VSQWSQQGD 142 (720)
T ss_pred CHHHHHHHHhcCCCCCcCHHHHHHHHHHhCHhHHHHHHh------------CHHHHhcCCCCCHHHHHHH-HHHHHHhHH
Confidence 567888888877678999999999999999876543222 12111111 000000111 1112111 2
Q ss_pred HHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCCh
Q psy15153 89 AEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDP 128 (169)
Q Consensus 89 ~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~ 128 (169)
..++...|. ..|++...+.+-.+.||.+.+..-+..|
T Consensus 143 ~~~~~~~L~---~~gi~~~~a~ki~~~yg~~~~~~i~~nP 179 (720)
T TIGR01448 143 ERRLLAGLQ---GLGIGIKLAQRIYKFYQADTLDRVEKDP 179 (720)
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHhHHHHHHHHhCc
Confidence 455555553 2477777777777777766655444443
No 71
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=27.16 E-value=1.1e+02 Score=19.14 Aligned_cols=26 Identities=4% Similarity=-0.061 Sum_probs=17.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy15153 131 RKYIEQVRKSVFLLFFYCFPFSTKFS 156 (169)
Q Consensus 131 ~~~~~~~~~~~~liL~~aaiis~~~~ 156 (169)
.-+...+++|.+.++++.++++.+..
T Consensus 25 ~pl~~llk~p~tai~~i~~~~~~~~~ 50 (61)
T PF05421_consen 25 EPLKPLLKNPVTAIALIGILIGGFIF 50 (61)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34456678888888887777766543
No 72
>KOG0931|consensus
Probab=27.00 E-value=1.3e+02 Score=26.62 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHh-h-HHHHH-HHHHHHHHh--hh--------------------hh
Q psy15153 27 GLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR-K-SVFLL-FFIASKEEM--WL--------------------TT 81 (169)
Q Consensus 27 GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~-~-p~~ll-L~~~~~~~~--~~--------------------~~ 81 (169)
-++.|-..+|.=+.|.|.+..++.+..-..+-.-|. | |.-+- ++...+.++ .+ ..
T Consensus 190 ~~~~Dt~~kr~YriGlnlfn~kPekGvQ~Li~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvde 269 (627)
T KOG0931|consen 190 AFSNDTRRKRHYRIGLNLFNKKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDE 269 (627)
T ss_pred CCcchHHHHHHhhhccchhcCCcchhhhhhhhhcccCCCchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhh
Confidence 556666677766669999988777764433333332 2 32221 111111111 00 11
Q ss_pred HHhhhcCHHHHHHHhCCCcC-CCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccC
Q psy15153 82 NEASLMGAEEVAARLRVDCR-SGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRFP 160 (169)
Q Consensus 82 ~~~~~~~~~ev~~~l~~~~~-~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~~ 160 (169)
.++..+.+++.+.++..... +| -.+.|++..+-|-.- .. +-. -....||.||-++.+++-|||-+=++++-|
T Consensus 270 mDfssmelDeALRKfqahirvqg-EAqKveRlIeAFsqr-Yc--~cN---P~~v~qfrnpDTIfiLaFAIIlLNTDmySP 342 (627)
T KOG0931|consen 270 MDFSSMELDEALRKFQAHIRVQG-EAQKVERLIEAFSQR-YC--KCN---PKVVRQFRNPDTIFILAFAIILLNTDMYSP 342 (627)
T ss_pred hccccchHHHHHHHHHHHeeccc-HHHHHHHHHHHHHHH-Hh--ccC---HHHHhhccCCCeehHHHHHHHHhcccccCC
Confidence 23444555666666554321 11 112233333322200 00 011 245678999988888888888777777655
No 73
>PRK01631 hypothetical protein; Provisional
Probab=26.64 E-value=1.1e+02 Score=20.01 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=11.6
Q ss_pred CCCCCHHHHHHHHHh
Q psy15153 101 RSGLWWKEAELRRQL 115 (169)
Q Consensus 101 ~~GLs~~ev~~r~~~ 115 (169)
..|||.+|.++|...
T Consensus 17 ~~gLT~eE~~Eq~~L 31 (76)
T PRK01631 17 ATGLTVDEKQEQQML 31 (76)
T ss_pred ccCCCHHHHHHHHHH
Confidence 469999998877553
No 74
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=25.84 E-value=88 Score=18.40 Aligned_cols=17 Identities=12% Similarity=0.340 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy15153 140 SVFLLFFYCFPFSTKFS 156 (169)
Q Consensus 140 ~~~liL~~aaiis~~~~ 156 (169)
|...+|+++..+|..+|
T Consensus 2 PiLviL~g~vGLsa~vg 18 (46)
T PF11431_consen 2 PILVILFGAVGLSALVG 18 (46)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred ceehHHHHHhHHHHHHH
Confidence 77888899888988887
No 75
>PRK02539 hypothetical protein; Provisional
Probab=25.81 E-value=1.1e+02 Score=20.42 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhH
Q psy15153 101 RSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKS 140 (169)
Q Consensus 101 ~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~ 140 (169)
..|||.+|.+++.+. +.-++..|-.+|.+-
T Consensus 18 ~~gLT~eEk~Eq~~L----------R~eYl~~fR~~~~~~ 47 (85)
T PRK02539 18 TEGLTGEEKVEQAKL----------REEYIEGYRRSVRHH 47 (85)
T ss_pred ccCCCHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 369999998877654 233455555555543
No 76
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=25.38 E-value=1.2e+02 Score=24.66 Aligned_cols=18 Identities=11% Similarity=-0.208 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHhhcCCc
Q psy15153 103 GLWWKEAELRRQLIGYNE 120 (169)
Q Consensus 103 GLs~~ev~~r~~~~G~N~ 120 (169)
+.+++++++-+++||.|+
T Consensus 40 ~~~~~~~~~~~~~~gld~ 57 (306)
T PRK09471 40 TLPPEVMANIEAKYHLND 57 (306)
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 457777777778888764
No 77
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=25.15 E-value=1.3e+02 Score=16.58 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=10.2
Q ss_pred CCCChHHHHHHHHHhhHHHH
Q psy15153 124 KEEDPLWRKYIEQVRKSVFL 143 (169)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~l 143 (169)
+++++-+.++-.-+.=.|++
T Consensus 3 kkkKS~fekiT~v~v~lM~i 22 (35)
T PF13253_consen 3 KKKKSTFEKITMVVVWLMLI 22 (35)
T ss_pred CccccHHHHHHHHHHHHHHH
Confidence 45666666655444433333
No 78
>KOG0209|consensus
Probab=24.79 E-value=68 Score=30.67 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=32.9
Q ss_pred CHHHHHHHhCCCcCCCCCH-HHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHH
Q psy15153 88 GAEEVAARLRVDCRSGLWW-KEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVF 142 (169)
Q Consensus 88 ~~~ev~~~l~~~~~~GLs~-~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~ 142 (169)
+.++.+..+..+ .|+.. .+++.-..+||.|+.+-. .+++-..|.+.-..||.
T Consensus 149 p~~~~~g~~~k~--~G~~~~~~i~~a~~~~G~N~fdi~-vPtF~eLFkE~A~aPfF 201 (1160)
T KOG0209|consen 149 PTDEPFGYFQKS--TGHEEESEIKLAKHKYGKNKFDIV-VPTFSELFKEHAVAPFF 201 (1160)
T ss_pred CcCCcchhhhhc--cCcchHHHHHHHHHHhcCCccccC-CccHHHHHHHhccCcee
Confidence 456666677654 57773 334444456999999854 45577777766555543
No 79
>PRK15081 glutathione ABC transporter permease GsiC; Provisional
Probab=24.48 E-value=1.4e+02 Score=24.50 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHhhcCCc
Q psy15153 103 GLWWKEAELRRQLIGYNE 120 (169)
Q Consensus 103 GLs~~ev~~r~~~~G~N~ 120 (169)
..|+++.++-+++||-|+
T Consensus 42 ~~~~e~~~~~~~~~Gld~ 59 (306)
T PRK15081 42 EADAQVVALVRQQLGLDQ 59 (306)
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 357888888888888765
No 80
>PF13518 HTH_28: Helix-turn-helix domain
Probab=24.14 E-value=91 Score=17.60 Aligned_cols=37 Identities=14% Similarity=-0.005 Sum_probs=22.1
Q ss_pred cCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCC
Q psy15153 87 MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEE 126 (169)
Q Consensus 87 ~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~ 126 (169)
.+..+++..++.+.. +-..-..+-..+|.+.+.+.++
T Consensus 13 ~s~~~~a~~~gis~~---tv~~w~~~y~~~G~~~l~~~~~ 49 (52)
T PF13518_consen 13 ESVREIAREFGISRS---TVYRWIKRYREGGIEGLKPKKR 49 (52)
T ss_pred CCHHHHHHHHCCCHh---HHHHHHHHHHhcCHHHhccCCC
Confidence 377888887765431 2233345556678777776554
No 81
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=23.91 E-value=2.6e+02 Score=24.66 Aligned_cols=55 Identities=11% Similarity=-0.031 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHhhcCCcccCCC---CChHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy15153 102 SGLWWKEAELRRQLIGYNEFCVKE---EDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS 156 (169)
Q Consensus 102 ~GLs~~ev~~r~~~~G~N~l~~~~---~~~~~~~~~~~~~~~~~liL~~aaiis~~~~ 156 (169)
.|++++|+.+++++.|-=----++ ...++.+.+..+.-.-.+.|-+.|++.-+++
T Consensus 384 sg~~p~~iA~~lkk~g~~IpG~RpGk~t~~yL~k~i~r~t~~Ga~~l~~ia~lp~~~~ 441 (474)
T PTZ00219 384 SGSSAKDVAKQLKDQGMGMVGYRDSSSMVRVLNRYIPTAASFGGMCIGALTILADFLG 441 (474)
T ss_pred hCCCHHHHHHHHHHcCCCccCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999998843322222 2233444444443333344555555555554
No 82
>KOG3142|consensus
Probab=23.47 E-value=3.5e+02 Score=20.84 Aligned_cols=66 Identities=8% Similarity=-0.082 Sum_probs=41.9
Q ss_pred hhcCHHHHHHHhCCCcCCCCCHHH--HHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy15153 85 SLMGAEEVAARLRVDCRSGLWWKE--AELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTK 154 (169)
Q Consensus 85 ~~~~~~ev~~~l~~~~~~GLs~~e--v~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~ 154 (169)
...++.|.++.-.-+...++++.. ++.++..|--|=.. --....++.-+.+|+.++.+++.+.+.+
T Consensus 36 t~RpW~ef~d~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~----iv~~~~~~sLi~~P~~Livl~~lv~~w~ 103 (187)
T KOG3142|consen 36 TRRPWSEFFDRSAFSRPRSLSDATSRIKRNLSYFRVNYVI----IVAILLFLSLITHPLSLIVLLALVAAWL 103 (187)
T ss_pred ccCCHHHHHcccccCCCccHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345677777766655567888744 56677777666543 2233445555788998887776555543
No 83
>PRK01546 hypothetical protein; Provisional
Probab=23.25 E-value=1.4e+02 Score=19.70 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=11.8
Q ss_pred CCCCCHHHHHHHHHh
Q psy15153 101 RSGLWWKEAELRRQL 115 (169)
Q Consensus 101 ~~GLs~~ev~~r~~~ 115 (169)
..|||.+|.++|...
T Consensus 19 ~~gLT~eEk~Eq~~L 33 (79)
T PRK01546 19 AEGLTEEEQRERQSL 33 (79)
T ss_pred ccCCCHHHHHHHHHH
Confidence 469999998877654
No 84
>PF11697 DUF3293: Protein of unknown function (DUF3293); InterPro: IPR021710 This bacterial family of proteins has no known function.
Probab=22.94 E-value=96 Score=19.78 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHhCCCCC
Q psy15153 27 GLWWKEAELRRQLIGYNEF 45 (169)
Q Consensus 27 GLs~~ea~~r~~~~G~N~l 45 (169)
|++.++|..-.++||-|.+
T Consensus 55 ~i~~~~A~~Lg~~f~QnAI 73 (73)
T PF11697_consen 55 GISLEEAIALGRKFGQNAI 73 (73)
T ss_pred CCCHHHHHHHHHHhCcCcC
Confidence 8999999999999999975
No 85
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=22.74 E-value=1.8e+02 Score=18.35 Aligned_cols=21 Identities=10% Similarity=0.176 Sum_probs=8.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q psy15153 133 YIEQVRKSVFLLFFYCFPFST 153 (169)
Q Consensus 133 ~~~~~~~~~~liL~~aaiis~ 153 (169)
+++.+...+=+++.++|.+++
T Consensus 6 ~fk~iW~~~DIi~Fila~i~i 26 (63)
T PF06341_consen 6 FFKTIWKYFDIILFILAMIFI 26 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444443
No 86
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=22.72 E-value=2.9e+02 Score=23.80 Aligned_cols=55 Identities=9% Similarity=-0.080 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHhhcCCcccC----CCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy15153 102 SGLWWKEAELRRQLIGYNEFCV----KEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSV 157 (169)
Q Consensus 102 ~GLs~~ev~~r~~~~G~N~l~~----~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~ 157 (169)
.+++++|+.+++++-| ..++. +....++.+.+..+.-+-.+.|.+.|++..+++.
T Consensus 314 ~~~~p~~iA~~lkk~g-~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~p~l~~~ 372 (410)
T TIGR00967 314 LQLNPEDMAKNLKKQG-MFIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFLGA 372 (410)
T ss_pred HccCHHHHHHHHHHCC-CcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999988 34442 2223445555555444444555555666555543
No 87
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=22.59 E-value=1e+02 Score=19.36 Aligned_cols=13 Identities=0% Similarity=0.212 Sum_probs=6.8
Q ss_pred HHHHHHHhhHHHH
Q psy15153 131 RKYIEQVRKSVFL 143 (169)
Q Consensus 131 ~~~~~~~~~~~~l 143 (169)
+.|.+.|..+++-
T Consensus 13 qlfvdafteflvs 25 (73)
T PF07069_consen 13 QLFVDAFTEFLVS 25 (73)
T ss_pred HHHHHHHHHHHHH
Confidence 3455666555543
No 88
>COG1426 Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]
Probab=22.38 E-value=4.3e+02 Score=21.53 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=35.8
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHH-------HHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHhhh
Q psy15153 14 EEVAARLRVDCRSGLWWKEAELRR-------QLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASKEEMWLTTNEASL 86 (169)
Q Consensus 14 ~e~~~~l~~~~~~GLs~~ea~~r~-------~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~~~~~~~~~~~~~ 86 (169)
-+.++.-... .|||-+|++.+. ..-=.+.+..-..+-+.+-|++.|.+. -.
T Consensus 5 Ge~Lr~~Re~--~gLsL~dva~~t~I~~~~L~aiEeg~~~~lp~~~y~rG~ir~YA~~--------------------l~ 62 (284)
T COG1426 5 GERLRQAREE--KGLSLEDVAARTKIRKSYLRALEEGNFDKLPGPVYIRGYIRSYAKF--------------------LG 62 (284)
T ss_pred HHHHHHHHHH--cCCCHHHHHHHhCccHHHHHHHhcCccccccchHHHHHHHHHHHHH--------------------hC
Confidence 3444444433 699999998653 222334444444555555555555433 34
Q ss_pred cCHHHHHHHhCCC
Q psy15153 87 MGAEEVAARLRVD 99 (169)
Q Consensus 87 ~~~~ev~~~l~~~ 99 (169)
++.+++++.+...
T Consensus 63 ld~~~l~~~~~~~ 75 (284)
T COG1426 63 LDEDELLQAFEDE 75 (284)
T ss_pred CCHHHHHHHhhhc
Confidence 4677777777653
No 89
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=21.95 E-value=90 Score=30.28 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy15153 129 LWRKYIEQVRKSVFLLFFYCFPFSTKFSV 157 (169)
Q Consensus 129 ~~~~~~~~~~~~~~liL~~aaiis~~~~~ 157 (169)
+.+.+++||+.|+++.++++++++++.++
T Consensus 17 lp~~l~~qf~~~~N~yfl~i~ilq~ip~~ 45 (1057)
T TIGR01652 17 LPKNLFEQFKRFANLYFLVVALLQQVPIL 45 (1057)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHcCCCc
No 90
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=21.62 E-value=55 Score=20.40 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=18.5
Q ss_pred HhhcCCHHHHHHHhCCCCCCCCCHHHHHH-HHHHhC
Q psy15153 7 EASLMGAEEVAARLRVDCRSGLWWKEAEL-RRQLIG 41 (169)
Q Consensus 7 ~~~~~~~~e~~~~l~~~~~~GLs~~ea~~-r~~~~G 41 (169)
.|-..+.+||.+..-.=..+|++..|+-. .+.+||
T Consensus 24 ~W~~~~~~eVe~~I~klakkG~tpSqIG~iLRD~~G 59 (60)
T PF08069_consen 24 SWLKYSPEEVEELIVKLAKKGLTPSQIGVILRDQYG 59 (60)
T ss_dssp TT--S-HHHHHHHHHHHCCTTHCHHHHHHHHHHSCT
T ss_pred CCcCCCHHHHHHHHHHHHHcCCCHHHhhhhhhhccC
Confidence 34455566655433211456999998754 555555
No 91
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only]
Probab=21.54 E-value=82 Score=28.85 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=38.8
Q ss_pred HHHHHHHHhhcCCcccCC----------------CCChHHHHHHHHH-hhHHHHHHHHHHHHHHHhhcccCCCCccc
Q psy15153 107 KEAELRRQLIGYNEFCVK----------------EEDPLWRKYIEQV-RKSVFLLFFYCFPFSTKFSVRFPPGADFI 166 (169)
Q Consensus 107 ~ev~~r~~~~G~N~l~~~----------------~~~~~~~~~~~~~-~~~~~liL~~aaiis~~~~~~~~~~~~~~ 166 (169)
.+.-+-++...+|.++-. .-..-+..++..+ .+-++++|+..+++|+++|+-+|..+++|
T Consensus 403 ~~l~~aLe~gar~~i~v~ia~A~aGIIvGvitlTGlg~~~s~~l~~l~~g~l~l~L~lt~~~siiLGMGlPttanYI 479 (642)
T COG4666 403 RDLLEALESGARNVIPVAIACATAGIIVGVVTLTGLGLKLSSLLLDLAGGNLLLLLVLTMVISIILGMGLPTTANYI 479 (642)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHhhcceeeeEeecCchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCCccHHH
Confidence 355666777777766521 1111123333333 34467788889999999999999988887
No 92
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=21.52 E-value=4.5e+02 Score=23.06 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHhhcCCcccCCCC----ChHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy15153 102 SGLWWKEAELRRQLIGYNEFCVKEE----DPLWRKYIEQVRKSVFLLFFYCFPFSTKFSV 157 (169)
Q Consensus 102 ~GLs~~ev~~r~~~~G~N~l~~~~~----~~~~~~~~~~~~~~~~liL~~aaiis~~~~~ 157 (169)
.|++++|+.+++++-|.=---.++. ..++.+.+..+.-.-.+.|.+.|++..+++.
T Consensus 364 ~g~~p~diAe~Lkk~g~~IpGiRpG~~~t~~yL~~~i~r~t~~Ga~~l~~ia~lp~~~~~ 423 (462)
T PRK08568 364 TGLDPKTQARQLQNSGMQIPGFRRNPKVIEKVLERYIPPVTVIGGAIVGLLAVLADLLGA 423 (462)
T ss_pred hCCCHHHHHHHHHHcCCcccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999988432222322 3355555555544445556666666665554
No 93
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=21.51 E-value=3.5e+02 Score=20.08 Aligned_cols=30 Identities=20% Similarity=-0.063 Sum_probs=18.7
Q ss_pred cCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCccc
Q psy15153 87 MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFC 122 (169)
Q Consensus 87 ~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~ 122 (169)
.+-+|++++|++ | .+=|++-++.|+.++-.
T Consensus 41 ~sEeeii~~LG~-P-----~~iA~~i~~~~~i~~~~ 70 (181)
T PF08006_consen 41 KSEEEIIAELGS-P-----KEIAREILAEYSIKEEE 70 (181)
T ss_pred CCHHHHHHHcCC-H-----HHHHHHHHHhhhhhhhh
Confidence 466778787765 2 23456666777766554
No 94
>PLN00183 putative aquaporin NIP7; Provisional
Probab=21.45 E-value=2e+02 Score=23.40 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=37.1
Q ss_pred HHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHH
Q psy15153 94 ARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPF 151 (169)
Q Consensus 94 ~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaii 151 (169)
++-++. ..-|..++-.+|+..||- ++-.=..+.|+.++..|...+++++++++++
T Consensus 12 ~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~laEfigTfllvf~~~g~~ 66 (274)
T PLN00183 12 QEAGST-ASTLNGDDHPKRQRLFGC--LPYDMDLNPARMVLAEMVGTFILMFCVCGII 66 (274)
T ss_pred hhhcCC-CCcccCCCCchhhhhccc--cCCcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443 345667777888889984 3433346778888888887877777776554
No 95
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=21.37 E-value=2.8e+02 Score=24.22 Aligned_cols=54 Identities=6% Similarity=-0.178 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHhhc---CCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy15153 104 LWWKEAELRRQLIG---YNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSV 157 (169)
Q Consensus 104 Ls~~ev~~r~~~~G---~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~ 157 (169)
++++|..+++++.| |+.-|.++...++.+.+.++.-+-.+.|.+.|++..+++.
T Consensus 332 ~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~~~ 388 (434)
T PRK12907 332 VNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTK 388 (434)
T ss_pred cCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 78899999999988 3333334445566666666665556666666666665543
No 96
>PHA03093 EEV glycoprotein; Provisional
Probab=21.09 E-value=1.4e+02 Score=23.01 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=4.6
Q ss_pred hcCCcccCCC
Q psy15153 116 IGYNEFCVKE 125 (169)
Q Consensus 116 ~G~N~l~~~~ 125 (169)
|| ++|..++
T Consensus 19 YG-~klkkk~ 27 (185)
T PHA03093 19 YG-DKLKKKK 27 (185)
T ss_pred ec-hhhcccc
Confidence 55 5565443
No 97
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=20.33 E-value=1.9e+02 Score=17.81 Aligned_cols=26 Identities=15% Similarity=-0.011 Sum_probs=17.8
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHH
Q psy15153 14 EEVAARLRVDCRSGLWWKEAELRRQL 39 (169)
Q Consensus 14 ~e~~~~l~~~~~~GLs~~ea~~r~~~ 39 (169)
..+.+.-+.....+||..||.+|+..
T Consensus 25 ~tL~e~Age~~~~~LtkaeAs~rId~ 50 (57)
T PF11272_consen 25 KTLSEEAGEPFPDDLTKAEASERIDE 50 (57)
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHH
Confidence 44445555555579999999888754
Done!