Query psy15153
Match_columns 169
No_of_seqs 281 out of 2375
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 21:57:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixz_A Potassium-transporting 99.4 1.5E-13 5.1E-18 127.2 9.0 75 82-156 51-125 (1034)
2 3ar4_A Sarcoplasmic/endoplasmi 99.4 2.8E-13 9.5E-18 125.0 8.6 78 81-158 2-79 (995)
3 2zxe_A Na, K-ATPase alpha subu 99.4 3.5E-13 1.2E-17 124.7 7.0 76 82-157 46-121 (1028)
4 3ixz_A Potassium-transporting 99.1 8.6E-11 2.9E-15 108.8 8.4 68 6-73 51-118 (1034)
5 3ar4_A Sarcoplasmic/endoplasmi 99.1 1E-10 3.4E-15 108.0 7.1 69 5-73 2-70 (995)
6 3b8c_A ATPase 2, plasma membra 99.1 1.8E-12 6.1E-17 118.3 -5.8 73 82-156 12-84 (885)
7 2zxe_A Na, K-ATPase alpha subu 99.0 2.5E-10 8.6E-15 105.7 6.0 68 7-74 47-114 (1028)
8 1mhs_A Proton pump, plasma mem 98.9 4.8E-10 1.6E-14 102.7 4.0 66 93-159 77-142 (920)
9 3b8c_A ATPase 2, plasma membra 98.5 1.6E-09 5.6E-14 98.9 -5.4 66 6-73 12-77 (885)
10 1mhs_A Proton pump, plasma mem 98.3 5.6E-07 1.9E-11 82.5 5.0 55 18-73 78-132 (920)
11 1irz_A ARR10-B; helix-turn-hel 51.0 24 0.00082 21.4 4.0 27 12-41 31-57 (64)
12 2w84_A Peroxisomal membrane pr 47.2 21 0.00071 22.1 3.3 35 10-47 32-66 (70)
13 1nkz_B Light-harvesting protei 37.5 26 0.00089 19.3 2.4 11 102-112 1-11 (41)
14 2wwb_A Protein transport prote 33.7 1.5E+02 0.005 25.0 7.6 53 102-155 383-438 (476)
15 1lgh_B LH II, B800/850, light 32.8 32 0.0011 19.4 2.3 11 102-112 6-16 (45)
16 3fym_A Putative uncharacterize 29.2 45 0.0015 22.5 3.1 20 16-37 7-26 (130)
17 2knc_A Integrin alpha-IIB; tra 28.9 89 0.0031 18.2 4.2 30 122-151 5-34 (54)
18 2lz1_A Nuclear factor erythroi 26.9 1.3E+02 0.0045 19.4 4.7 44 3-49 35-80 (90)
19 3bhp_A UPF0291 protein YNZC; N 25.7 70 0.0024 19.1 3.0 24 89-115 10-33 (60)
20 1waz_A MERF; protein structure 24.0 49 0.0017 18.6 2.0 18 140-157 2-19 (46)
21 2k1a_A Integrin alpha-IIB; sin 23.0 1E+02 0.0035 16.9 4.2 27 124-150 5-31 (42)
22 2l8s_A Integrin alpha-1; trans 21.2 1.3E+02 0.0045 17.4 3.8 27 125-151 5-31 (54)
No 1
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.45 E-value=1.5e-13 Score=127.23 Aligned_cols=75 Identities=13% Similarity=0.080 Sum_probs=71.0
Q ss_pred HHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy15153 82 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS 156 (169)
Q Consensus 82 ~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~ 156 (169)
.+||.++++|++++|+++..+|||++||++|+++||+|++++++++++|++|++||.+|++++|++++++|++++
T Consensus 51 ~~~~~~~~~~~~~~l~~~~~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~~~q~~~~~~~il~~aa~~~~~~~ 125 (1034)
T 3ixz_A 51 INDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAF 125 (1034)
T ss_pred cchhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 368999999999999999888999999999999999999999999999999999999999999999999998765
No 2
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.42 E-value=2.8e-13 Score=124.98 Aligned_cols=78 Identities=22% Similarity=0.211 Sum_probs=73.3
Q ss_pred hHHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Q psy15153 81 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVR 158 (169)
Q Consensus 81 ~~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~ 158 (169)
+.+||.++++++++.++++..+|||++||++|+++||+|+++.++++++|+.|++||.+|++++|++++++|+++++.
T Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a~~s~~~~~~ 79 (995)
T 3ar4_A 2 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWF 79 (995)
T ss_dssp CTTGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHHCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHHHHHHHHTTS
T ss_pred cchhhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999887899999999999999999999988899999999999999999999999999998754
No 3
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.39 E-value=3.5e-13 Score=124.70 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=71.4
Q ss_pred HHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy15153 82 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSV 157 (169)
Q Consensus 82 ~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~ 157 (169)
.+||.++++++++.++++..+|||++||++|+++||+|++++++++++|++|++||.+||+++|++++++|++++.
T Consensus 46 ~~~~~~~~~~~~~~l~t~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~ls~~~~~ 121 (1028)
T 2zxe_A 46 MDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYG 121 (1028)
T ss_dssp CCCSSSCHHHHHHHHTCCSSSCBCHHHHHHHHHHHCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHHHHHHHHH
T ss_pred cchhhCCHHHHHHHhCcCccCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999987789999999999999999999999899999999999999999999999999988753
No 4
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.13 E-value=8.6e-11 Score=108.84 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=63.4
Q ss_pred HHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153 6 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS 73 (169)
Q Consensus 6 ~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~ 73 (169)
.+||.++.+++++.++++..+|||++||++|+++||+|++++++++++|++|++||.+|++++|++++
T Consensus 51 ~~~~~~~~~~~~~~l~~~~~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~~~q~~~~~~~il~~aa 118 (1034)
T 3ixz_A 51 INDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAA 118 (1034)
T ss_pred cchhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHhChHHHHHHHHH
Confidence 36899999999999999987899999999999999999999999999999999999999988887654
No 5
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.10 E-value=1e-10 Score=108.00 Aligned_cols=69 Identities=25% Similarity=0.309 Sum_probs=64.1
Q ss_pred cHHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153 5 TNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS 73 (169)
Q Consensus 5 ~~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~ 73 (169)
|.+||.++++++++.+++|..+|||++||++|+++||+|+++..+++++|+.+++||.+|++++|++++
T Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a 70 (995)
T 3ar4_A 2 MEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAA 70 (995)
T ss_dssp CTTGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHHCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHH
T ss_pred cchhhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999977899999999999999999999999999999999999999988777654
No 6
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=99.07 E-value=1.8e-12 Score=118.33 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=67.4
Q ss_pred HHhhhcCHHHHHHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy15153 82 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFS 156 (169)
Q Consensus 82 ~~~~~~~~~ev~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~ 156 (169)
.++|.++.+|+++.++++ .+|||++||++|+++||+|+++.++ +++|++|++||.||++++|++++++|++++
T Consensus 12 ~~~~~~~~~~~~~~l~~~-~~GLs~~e~~~r~~~~G~N~l~~~~-~~~~~~~l~~~~~p~~~il~~aaiis~~l~ 84 (885)
T 3b8c_A 12 VDLEKIPIEEVFQQLKCS-REGLTTQEGEDRIQIFGPNKLEEKK-ESKLLKFLGFMWNPLSWVMEMAAIMAIALA 84 (885)
T ss_dssp CCCSSSSTTCCTTTSSSC-SSCSTHHHHHHHSSSCCSCCTTTTC-CCTTSSTTSCCCGGGSSHHHHHHHGGGGSS
T ss_pred hhhHhCCHHHHHHHhCCC-CCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999997 5899999999999999999998776 678899999999999999999999999987
No 7
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.01 E-value=2.5e-10 Score=105.68 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=63.3
Q ss_pred HhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy15153 7 EASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIASK 74 (169)
Q Consensus 7 ~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~~ 74 (169)
+||.++++++++.++++..+|||++||++|+++||+|+++.++++++|++|++||.+|++++|++++.
T Consensus 47 ~~~~~~~~~~~~~l~t~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~ 114 (1028)
T 2zxe_A 47 DDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAI 114 (1028)
T ss_dssp CCSSSCHHHHHHHHTCCSSSCBCHHHHHHHHHHHCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHH
T ss_pred chhhCCHHHHHHHhCcCccCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 57999999999999999778999999999999999999999999999999999999999988887643
No 8
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=98.92 E-value=4.8e-10 Score=102.65 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=58.0
Q ss_pred HHHhCCCcCCCCCHHHHHHHHHhhcCCcccCCCCChHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc
Q psy15153 93 AARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKFSVRF 159 (169)
Q Consensus 93 ~~~l~~~~~~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~~~~~ 159 (169)
.+.++++..+|||++||++|+++||+|++++++ .++|.+|+.||.+|+.++|++++++++++|.+.
T Consensus 77 ~~~l~t~~~~GLs~~ea~~r~~~~G~N~l~~~~-~~~~~~~l~~f~~~~~~ll~~aai~s~~~g~~~ 142 (920)
T 1mhs_A 77 EDMLQTDTRVGLTSEEVVQRRRKYGLNQMKEEK-ENHFLKFLGFFVGPIQFVMEGAAVLAAGLEDWV 142 (920)
T ss_dssp STTTTTCCCCCCCSHHHHHHHHHTSSSSCCCCC-CSSHHHHTHHHHHHHHHHHHHHHHHCTTCSCSS
T ss_pred HHHhCCCcCCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345788777899999999999999999999654 678999999999999999999999998887654
No 9
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=98.52 E-value=1.6e-09 Score=98.89 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=58.7
Q ss_pred HHhhcCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153 6 NEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS 73 (169)
Q Consensus 6 ~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~ 73 (169)
.++|.++.+++++.++++ .+|||++||++|+++||+|+++.++ ++.|+.|++||.||++++|++++
T Consensus 12 ~~~~~~~~~~~~~~l~~~-~~GLs~~e~~~r~~~~G~N~l~~~~-~~~~~~~l~~~~~p~~~il~~aa 77 (885)
T 3b8c_A 12 VDLEKIPIEEVFQQLKCS-REGLTTQEGEDRIQIFGPNKLEEKK-ESKLLKFLGFMWNPLSWVMEMAA 77 (885)
T ss_dssp CCCSSSSTTCCTTTSSSC-SSCSTHHHHHHHSSSCCSCCTTTTC-CCTTSSTTSCCCGGGSSHHHHHH
T ss_pred hhhHhCCHHHHHHHhCCC-CCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999998 6899999999999999999998776 77899999999999987776654
No 10
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=98.28 E-value=5.6e-07 Score=82.49 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=47.2
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHhCCCCCCccCCchHHHHHHHHHhhHHHHHHHHHH
Q psy15153 18 ARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFFIAS 73 (169)
Q Consensus 18 ~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~qf~~p~~llL~~~~ 73 (169)
+.++++...|||++||++|+++||+|+++.. ++++|..|+.||.+|+.++|.+++
T Consensus 78 ~~l~t~~~~GLs~~ea~~r~~~~G~N~l~~~-~~~~~~~~l~~f~~~~~~ll~~aa 132 (920)
T 1mhs_A 78 DMLQTDTRVGLTSEEVVQRRRKYGLNQMKEE-KENHFLKFLGFFVGPIQFVMEGAA 132 (920)
T ss_dssp TTTTTCCCCCCCSHHHHHHHHHTSSSSCCCC-CCSSHHHHTHHHHHHHHHHHHHHH
T ss_pred HHhCCCcCCCCCHHHHHHHHHhcCCCccCCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4578876789999999999999999999865 477899999999999987776553
No 11
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=51.04 E-value=24 Score=21.38 Aligned_cols=27 Identities=15% Similarity=0.088 Sum_probs=21.1
Q ss_pred CHHHHHHHhCCCCCCCCCHHHHHHHHHHhC
Q psy15153 12 GAEEVAARLRVDCRSGLWWKEAELRRQLIG 41 (169)
Q Consensus 12 ~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G 41 (169)
.+..|++..+++ |||..+++..+++|-
T Consensus 31 tPk~Il~~M~v~---gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 31 VPKKILDLMNVD---KLTRENVASHLQKFR 57 (64)
T ss_dssp CHHHHHHHHCCT---TCCHHHHHHHHHHHH
T ss_pred CcHHHHHHcCCC---CCCHHHHHHHHHHHH
Confidence 355666666654 999999999999984
No 12
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=47.20 E-value=21 Score=22.11 Aligned_cols=35 Identities=20% Similarity=-0.018 Sum_probs=24.3
Q ss_pred cCCHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCCc
Q psy15153 10 LMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCV 47 (169)
Q Consensus 10 ~~~~~e~~~~l~~~~~~GLs~~ea~~r~~~~G~N~l~~ 47 (169)
..+.+.=.+.|.+ .|||.+|+++-+++.|.+.-.+
T Consensus 32 ~sp~~~K~~FL~s---KGLt~eEI~~Al~ra~~~~~~p 66 (70)
T 2w84_A 32 QSPLATRRAFLKK---KGLTDEEIDMAFQQSGTAADEP 66 (70)
T ss_dssp GSCHHHHHHHHHH---TTCCHHHHHHHHHHHTCCCCC-
T ss_pred hCCHHHHHHHHHH---cCCCHHHHHHHHHHccCCCCCC
Confidence 3344444455544 5999999999999988776543
No 13
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=37.45 E-value=26 Score=19.31 Aligned_cols=11 Identities=18% Similarity=-0.012 Sum_probs=8.6
Q ss_pred CCCCHHHHHHH
Q psy15153 102 SGLWWKEAELR 112 (169)
Q Consensus 102 ~GLs~~ev~~r 112 (169)
.|||++||++-
T Consensus 1 ~gLT~~EA~Ef 11 (41)
T 1nkz_B 1 ATLTAEQSEEL 11 (41)
T ss_dssp CCCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 48999998764
No 14
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=33.70 E-value=1.5e+02 Score=25.01 Aligned_cols=53 Identities=11% Similarity=-0.151 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHhhcCCcccC---CCCChHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy15153 102 SGLWWKEAELRRQLIGYNEFCV---KEEDPLWRKYIEQVRKSVFLLFFYCFPFSTKF 155 (169)
Q Consensus 102 ~GLs~~ev~~r~~~~G~N~l~~---~~~~~~~~~~~~~~~~~~~liL~~aaiis~~~ 155 (169)
.|++++|+++++++.| ..++. ++...++.+.+..+.=+-.+.|.+.+++..++
T Consensus 383 ~g~np~dvA~~Lkk~G-~~IpGiRp~~T~~yL~~vi~rit~~Ga~~l~~lavlp~~l 438 (476)
T 2wwb_A 383 SGSSAKDVAKQLKEQQ-MVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFL 438 (476)
T ss_dssp SSCCHHHHHHHHHHHC-TTTCCCCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHcC-CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999 33332 33444566666665544444455445554444
No 15
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=32.80 E-value=32 Score=19.36 Aligned_cols=11 Identities=45% Similarity=0.193 Sum_probs=9.5
Q ss_pred CCCCHHHHHHH
Q psy15153 102 SGLWWKEAELR 112 (169)
Q Consensus 102 ~GLs~~ev~~r 112 (169)
.|||++||++-
T Consensus 6 tGLT~~EA~Ef 16 (45)
T 1lgh_B 6 SGLTEEEAIAV 16 (45)
T ss_dssp SSCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 69999999875
No 16
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=29.20 E-value=45 Score=22.49 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=12.5
Q ss_pred HHHHhCCCCCCCCCHHHHHHHH
Q psy15153 16 VAARLRVDCRSGLWWKEAELRR 37 (169)
Q Consensus 16 ~~~~l~~~~~~GLs~~ea~~r~ 37 (169)
-++.+... .|||.+|.+++.
T Consensus 7 ~lr~~R~~--~gltq~elA~~~ 26 (130)
T 3fym_A 7 ALKGRRER--LGMTLTELEQRT 26 (130)
T ss_dssp HHHHHHHH--TTCCHHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHH
Confidence 34444433 588888887765
No 17
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.90 E-value=89 Score=18.15 Aligned_cols=30 Identities=10% Similarity=0.241 Sum_probs=21.8
Q ss_pred cCCCCChHHHHHHHHHhhHHHHHHHHHHHH
Q psy15153 122 CVKEEDPLWRKYIEQVRKSVFLLFFYCFPF 151 (169)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~liL~~aaii 151 (169)
+.....++|..+...+.+.+++.|++.++-
T Consensus 5 ~~~~~vp~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 5 SEERAIPIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889888888888877777766554
No 18
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.87 E-value=1.3e+02 Score=19.37 Aligned_cols=44 Identities=7% Similarity=0.032 Sum_probs=29.8
Q ss_pred CCcHHhhcCCHHHHHHHhCCCCCCCCCHHHHHH--HHHHhCCCCCCccC
Q psy15153 3 LTTNEASLMGAEEVAARLRVDCRSGLWWKEAEL--RRQLIGYNEFCVKE 49 (169)
Q Consensus 3 ~~~~~~~~~~~~e~~~~l~~~~~~GLs~~ea~~--r~~~~G~N~l~~~~ 49 (169)
|...++-.++++|.-..+.. .|||++|..- -...-|+|.+....
T Consensus 35 FsvdqIvnLpv~eFn~lL~~---~~Lt~~Ql~lIrdiRRRgKNkvAAqn 80 (90)
T 2lz1_A 35 FPVEKIINLPVVDFNEMMSK---EQFNEAQLALIRDIRRRGKNKVAAQN 80 (90)
T ss_dssp SCHHHHHHSCHHHHHHHHHH---SCCCHHHHHHHHHHHHHSCSCCCCCC
T ss_pred CCHHHHHHCCHHHHHHHHHH---cCCCHHHHHHHHHHHHhhhhHHHHHH
Confidence 34456667777777777754 3999998753 34556999886543
No 19
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=25.75 E-value=70 Score=19.08 Aligned_cols=24 Identities=21% Similarity=0.226 Sum_probs=15.5
Q ss_pred HHHHHHHhCCCcCCCCCHHHHHHHHHh
Q psy15153 89 AEEVAARLRVDCRSGLWWKEAELRRQL 115 (169)
Q Consensus 89 ~~ev~~~l~~~~~~GLs~~ev~~r~~~ 115 (169)
+.+++..-. ..|||.+|.+++.+.
T Consensus 10 INeLakK~K---~~gLT~eEk~EQ~~L 33 (60)
T 3bhp_A 10 INELAAKAK---AGVITEEEKAEQQKL 33 (60)
T ss_dssp HHHHHHHHH---HTCCCHHHHHHHHHH
T ss_pred HHHHHHHHh---ccCCCHHHHHHHHHH
Confidence 344444443 369999998777553
No 20
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=23.99 E-value=49 Score=18.56 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy15153 140 SVFLLFFYCFPFSTKFSV 157 (169)
Q Consensus 140 ~~~liL~~aaiis~~~~~ 157 (169)
|...+|+++..+|..+|.
T Consensus 2 PvLViL~g~vGLsa~vgy 19 (46)
T 1waz_A 2 PVLVILLGVVGLSALTGY 19 (46)
T ss_dssp HHHHHHHHHHHHHHCCSC
T ss_pred ceeehhHHHhhHHHHHHH
Confidence 777888888889988764
No 21
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=23.00 E-value=1e+02 Score=16.86 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=18.9
Q ss_pred CCCChHHHHHHHHHhhHHHHHHHHHHH
Q psy15153 124 KEEDPLWRKYIEQVRKSVFLLFFYCFP 150 (169)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~liL~~aai 150 (169)
....++|..+...+.+.+.+.|++.+.
T Consensus 5 ~~~vp~wiIi~s~l~GLllL~li~~~L 31 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLLLTILVLAM 31 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888777776666544
No 22
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=21.16 E-value=1.3e+02 Score=17.43 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHHhhHHHHHHHHHHHH
Q psy15153 125 EEDPLWRKYIEQVRKSVFLLFFYCFPF 151 (169)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~liL~~aaii 151 (169)
...++|..+...+.+.+.+.|++.++-
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888777777766554
Done!