RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15153
(169 letters)
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA
based on a phylogenetic analysis which distinguishes
this group from the Type IIB PMCA calcium pump modelled
by TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 58.7 bits (142), Expect = 1e-10
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 7 EASLMGAEEVAARLRVDCRSGLWWK-EAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSV 65
+ + EE ++L+ D ++GL EA RR G+NEF V+E++ LW+K++ Q K+
Sbjct: 3 QYCELSVEETCSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNP 62
Query: 66 FLLFFIAS 73
+L IAS
Sbjct: 63 LILLLIAS 70
Score = 53.7 bits (129), Expect = 6e-09
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 83 EASLMGAEEVAARLRVDCRSGLWWK-EAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSV 141
+ + EE ++L+ D ++GL EA RR G+NEF V+E++ LW+K++ Q K+
Sbjct: 3 QYCELSVEETCSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNP 62
Query: 142 FLL 144
+L
Sbjct: 63 LIL 65
>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase,
N-terminus. Members of this families are involved in
Na+/K+, H+/K+, Ca++ and Mg++ transport.
Length = 69
Score = 52.2 bits (126), Expect = 8e-10
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 8 ASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFL 67
+ EEV ARL D GL EAE R + G NE K+ LW+ ++ Q K +
Sbjct: 1 WHTLSVEEVLARLGTDLEKGLTEAEAEERLEKYGPNELPEKKPKSLWKIFLRQF-KDPLV 59
Query: 68 LFFIAS 73
+ + +
Sbjct: 60 IILLIA 65
Score = 50.2 bits (121), Expect = 4e-09
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 84 ASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFL 143
+ EEV ARL D GL EAE R + G NE K+ LW+ ++ Q K +
Sbjct: 1 WHTLSVEEVLARLGTDLEKGLTEAEAEERLEKYGPNELPEKKPKSLWKIFLRQF-KDPLV 59
Query: 144 L 144
+
Sbjct: 60 I 60
>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase,
N-terminus. This entry represents the conserved
N-terminal region found in several classes of
cation-transporting P-type ATPases, including those
that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the
H+/K+- and Na+/K+-exchange P-ATPases, this domain is
found in the catalytic alpha chain. In gastric
H+/K+-ATPases, this domain undergoes reversible
sequential phosphorylation inducing conformational
changes that may be important for regulating the
function of these ATPases.
Length = 75
Score = 40.6 bits (96), Expect = 2e-05
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 11 MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFF 70
+ EEV RL+ D GL +EA R + G NE ++ +++ Q + +
Sbjct: 7 LSLEEVLERLQTDLEKGLSSEEAARRLERYGPNELPPPKKTSPLLRFLRQF-HNPLIYIL 65
Query: 71 IAS 73
+A+
Sbjct: 66 LAA 68
Score = 39.5 bits (93), Expect = 5e-05
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 87 MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 138
+ EEV RL+ D GL +EA R + G NE ++ +++ Q
Sbjct: 7 LSLEEVLERLQTDLEKGLSSEEAARRLERYGPNELPPPKKTSPLLRFLRQFH 58
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport
and metabolism].
Length = 917
Score = 38.5 bits (90), Expect = 0.001
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 1 MWLTTNEASLMGAE--EVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYI 58
+T+ + E E+ L +GL +E + R + G NE +++ L +K++
Sbjct: 16 TPVTSETWHPLSVERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFL 75
Query: 59 EQVRKSVFLLFFIAS 73
Q + +L +A+
Sbjct: 76 RQFKDPFIILLLVAA 90
Score = 36.5 bits (85), Expect = 0.004
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 73 SKEEMWLTTNEASLMGAE--EVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLW 130
+T+ + E E+ L +GL +E + R + G NE +++ L
Sbjct: 12 KSSSTPVTSETWHPLSVERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLL 71
Query: 131 RKYIEQVRKSVFLLFF 146
+K++ Q + +L
Sbjct: 72 KKFLRQFKDPFIILLL 87
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 34.9 bits (81), Expect = 0.015
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 19/88 (21%)
Query: 51 DPLWRKYIEQVRKSVFLLFFIASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAE 110
+ L+ + Q+R + A K E EE+A +L +
Sbjct: 337 EALFEEARAQLRPQIDGRTPGAWKAETV-----------EELARKLGIPP--------GG 377
Query: 111 LRRQLIGYNEFCVKEEDPLWRKYIEQVR 138
L+ + YN EDP + K E +R
Sbjct: 378 LQATVDAYNRAAAGGEDPPFHKQPEWLR 405
Score = 31.4 bits (72), Expect = 0.21
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 13 AEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 62
EE+A +L + L+ + YN EDP + K E +R
Sbjct: 364 VEELARKLGIPP--------GGLQATVDAYNRAAAGGEDPPFHKQPEWLR 405
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1) which are modelled
by TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 31.3 bits (71), Expect = 0.22
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 8 ASLMGAEEVAARLRVDCRSGLWWKEAEL--RRQLIGYNEFCVKEEDPLWRKYIEQVRKSV 65
L GAE +A +L+ D G+ + L R ++ G NE K + +
Sbjct: 40 EKLGGAEGIATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQT 99
Query: 66 FLLFFIAS 73
+L +A+
Sbjct: 100 LILLSVAA 107
Score = 30.9 bits (70), Expect = 0.36
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 84 ASLMGAEEVAARLRVDCRSGLWWKEAEL--RRQLIGYNEFCVKEEDPLWRKYIEQVRKSV 141
L GAE +A +L+ D G+ + L R ++ G NE K + +
Sbjct: 40 EKLGGAEGIATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQT 99
Query: 142 FLLFFYCFPFSTKFSVRFPPGAD 164
+L S + P
Sbjct: 100 LILLSVAAVVSLVLGLPEPGEGK 122
>gnl|CDD|184499 PRK14090, PRK14090, phosphoribosylformylglycinamidine synthase II;
Provisional.
Length = 601
Score = 27.1 bits (60), Expect = 5.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 39 LIGYNEFCVKEEDPLWRKYIEQVRKSVFLL 68
+G+N+F ++ E LWR+ + + F+L
Sbjct: 515 AVGWNDFELEREKELWREIRKLSEEGAFIL 544
Score = 27.1 bits (60), Expect = 5.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 115 LIGYNEFCVKEEDPLWRKYIEQVRKSVFLL 144
+G+N+F ++ E LWR+ + + F+L
Sbjct: 515 AVGWNDFELEREKELWREIRKLSEEGAFIL 544
>gnl|CDD|236974 PRK11768, PRK11768, serine/threonine protein kinase; Provisional.
Length = 325
Score = 26.3 bits (59), Expect = 8.8
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 15/53 (28%)
Query: 23 DCRSG-----LWW----KEAELRRQLI----GYNEFCVKEEDPLWRKYIEQVR 62
D R G LW AE QL GY EFC E DP IE +R
Sbjct: 221 DARMGPAVQDLWMLLSGDRAEQLMQLETLLEGYEEFC--EFDPRELALIEPLR 271
Score = 26.3 bits (59), Expect = 8.8
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 15/53 (28%)
Query: 99 DCRSG-----LWW----KEAELRRQLI----GYNEFCVKEEDPLWRKYIEQVR 138
D R G LW AE QL GY EFC E DP IE +R
Sbjct: 221 DARMGPAVQDLWMLLSGDRAEQLMQLETLLEGYEEFC--EFDPRELALIEPLR 271
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.139 0.453
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,996,391
Number of extensions: 841582
Number of successful extensions: 999
Number of sequences better than 10.0: 1
Number of HSP's gapped: 993
Number of HSP's successfully gapped: 26
Length of query: 169
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 79
Effective length of database: 6,945,742
Effective search space: 548713618
Effective search space used: 548713618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.9 bits)