RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15153
(169 letters)
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 51.5 bits (124), Expect = 2e-08
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 11 MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQ 60
EE A V +GL + + + G+NE +E LW IEQ
Sbjct: 8 KSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQ 57
Score = 51.5 bits (124), Expect = 2e-08
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 87 MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQ 136
EE A V +GL + + + G+NE +E LW IEQ
Sbjct: 8 KSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQ 57
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 45.3 bits (108), Expect = 3e-06
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 11 MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFF 70
+ +E+ + D GL A+ G N P W K+ Q+ F +
Sbjct: 51 LSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQL-FGGFSILL 109
Query: 71 IAS 73
Sbjct: 110 WIG 112
Score = 45.3 bits (108), Expect = 3e-06
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 87 MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLL 144
+ +E+ + D GL A+ G N P W K+ Q+ F +
Sbjct: 51 LSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQL-FGGFSI 107
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 44.2 bits (105), Expect = 7e-06
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 11 MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLLFF 70
+ E+ + + GL A G N P + K+ Q+
Sbjct: 56 LSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQL-AGGLQCLM 114
Query: 71 IAS 73
+
Sbjct: 115 WVA 117
Score = 43.8 bits (104), Expect = 9e-06
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 87 MGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVFLL 144
+ E+ + + GL A G N P + K+ Q+
Sbjct: 56 LSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQL-AGGLQC 112
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 39.2 bits (92), Expect = 3e-04
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 72 ASKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWR 131
+S E++ T + + EEV +L+ R GL +E E R Q+ G N+ ++++
Sbjct: 2 SSLEDIKNETVDLEKIPIEEVFQQLKCS-REGLTTQEGEDRIQIFGPNKL-EEKKESKLL 59
Query: 132 KYIEQ 136
K++
Sbjct: 60 KFLGF 64
Score = 37.3 bits (87), Expect = 0.001
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 7 EASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQ 60
+ + EEV +L+ R GL +E E R Q+ G N+ ++++ K++
Sbjct: 13 DLEKIPIEEVFQQLKCS-REGLTTQEGEDRIQIFGPNKL-EEKKESKLLKFLGF 64
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.004
Identities = 42/198 (21%), Positives = 63/198 (31%), Gaps = 67/198 (33%)
Query: 18 ARLRVDCRSGLWWKEAELRRQLIGYNEFCVKE--------EDPLWRKYIEQVRKSVFLLF 69
A V + L + ELR L G + E W + VRK++ +LF
Sbjct: 247 AHYVVTAKL-LGFTPGELRSYLKGATG-HSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 70 FI-------ASKEEMWLTTNEASLMGAEEVAAR-LRVDCRSGLWWKEAELRRQLIGYNEF 121
FI + + E SL E V + L + S L + +++ + N
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI---SNL--TQEQVQDYVNKTNSH 359
Query: 122 CVKEED-----------------P--LW------RKY-----IEQVRKSVFLLFFYCFPF 151
+ P L+ RK ++Q R PF
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI----------PF 409
Query: 152 S---TKFSVRF-PPGADF 165
S KFS RF P + F
Sbjct: 410 SERKLKFSNRFLPVASPF 427
Score = 31.9 bits (72), Expect = 0.091
Identities = 31/179 (17%), Positives = 54/179 (30%), Gaps = 57/179 (31%)
Query: 38 QLIGYNEFCVKEEDPLWRKY-------IEQVRKSVFLLFFIASKEEM----------WLT 80
Q G + +E L++ Y I+ +++ L E WL
Sbjct: 163 Q--GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 81 TNEAS-----LMGAEEVA---------ARLRVDCRSGLWWKEAELRRQLIGYNEFCVKE- 125
+ L+ ++ A V + L + ELR L G +
Sbjct: 221 NPSNTPDKDYLLSIP-ISCPLIGVIQLAHYVVTAKL-LGFTPGELRSYLKGATG-HSQGL 277
Query: 126 -------EDPLWRKYIEQVRKSVFLLFF------YCFPFSTKFSVRFPPG--ADFIRKG 169
E W + VRK++ +LFF +P ++ PP D +
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS-----LPPSILEDSLENN 331
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 35.8 bits (83), Expect = 0.004
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 73 SKEEMWLTTNEASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRK 132
++EE T + E++ L+ D R GL +E RR+ G N+ +E++ + K
Sbjct: 60 AEEEEEEATPGGGRVVPEDM---LQTDTRVGLTSEEVVQRRRKYGLNQM-KEEKENHFLK 115
Query: 133 YIEQ 136
++
Sbjct: 116 FLGF 119
Score = 34.6 bits (80), Expect = 0.012
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 20 LRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQ 60
L+ D R GL +E RR+ G N+ +E++ + K++
Sbjct: 80 LQTDTRVGLTSEEVVQRRRKYGLNQM-KEEKENHFLKFLGF 119
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 30.0 bits (68), Expect = 0.38
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 14 EEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRK 56
E++A + A+L + + YN + +D + +
Sbjct: 443 EQLAKSTGMK--------VADLAKTVSDYNGYVASGKDTAFGR 477
Score = 30.0 bits (68), Expect = 0.38
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 90 EEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRK 132
E++A + A+L + + YN + +D + +
Sbjct: 443 EQLAKSTGMK--------VADLAKTVSDYNGYVASGKDTAFGR 477
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 29.6 bits (67), Expect = 0.46
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 17/84 (20%)
Query: 58 IEQVRKSVFLLFFIASKEEMWLTTNEASLMGA---------EEVAARLRVDCRSGLWWKE 108
+ FL+ AS EE T + EE+ + + +
Sbjct: 348 LFHQDNQAFLIIDEASYEEGAAATTATPFLRVQPKWAAETVEELESDMGLP--------A 399
Query: 109 AELRRQLIGYNEFCVKEEDPLWRK 132
L+ + YN+ + DPL K
Sbjct: 400 GALQSTVEVYNKHAAEGSDPLLHK 423
Score = 29.2 bits (66), Expect = 0.75
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 14 EEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRK 56
EE+ + + + L+ + YN+ + DPL K
Sbjct: 389 EELESDMGLP--------AGALQSTVEVYNKHAAEGSDPLLHK 423
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 29.3 bits (66), Expect = 0.55
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 58 IEQVRKSVFLLFFIASKEEMWLTTNEASL------MGAEEVAARLRVDCRSGLWWKEAEL 111
++Q +S +L+F + ++ + L EE+A ++ V AEL
Sbjct: 410 LQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEGKTIEELAKQIDVP--------AAEL 461
Query: 112 RRQLIGYNEFCVKEEDPLWRK 132
+ + YN F +D + +
Sbjct: 462 AKTVTAYNGFVKSGKDAQFER 482
Score = 28.9 bits (65), Expect = 0.88
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 14 EEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRK 56
EE+A ++ V AEL + + YN F +D + +
Sbjct: 448 EELAKQIDVP--------AAELAKTVTAYNGFVKSGKDAQFER 482
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 2.0
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 13 AEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKS 64
EE RL+ +A + + E K+ + ++ EQV K+
Sbjct: 91 REEQRKRLQE--------LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Score = 27.4 bits (60), Expect = 2.0
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 89 AEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKS 140
EE RL+ +A + + E K+ + ++ EQV K+
Sbjct: 91 REEQRKRLQE--------LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics,
northeast structural genomics consortiu PSI-biology; NMR
{Lactobacillus plantarum}
Length = 160
Score = 26.5 bits (59), Expect = 3.5
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 8/39 (20%)
Query: 14 EEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDP 52
E A + + EL + + Y + D
Sbjct: 99 ESAAEQAGIV--------VDELVQTVKNYQGYVQDGHDH 129
Score = 26.5 bits (59), Expect = 3.5
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 8/39 (20%)
Query: 90 EEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDP 128
E A + + EL + + Y + D
Sbjct: 99 ESAAEQAGIV--------VDELVQTVKNYQGYVQDGHDH 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.453
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,729,867
Number of extensions: 154263
Number of successful extensions: 431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 25
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.6 bits)