RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15153
         (169 letters)



>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
          transmembrane domain M {Rabbit (Oryctolagus cuniculus)
          [TaxId: 9986]}
          Length = 472

 Score = 51.6 bits (123), Expect = 6e-09
 Identities = 17/67 (25%), Positives = 27/67 (40%)

Query: 7  EASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVRKSVF 66
           A     EE  A   V   +GL   + +   +  G+NE   +E   LW   IEQ    + 
Sbjct: 3  AAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLV 62

Query: 67 LLFFIAS 73
           +  +A+
Sbjct: 63 RILLLAA 69



 Score = 48.9 bits (116), Expect = 5e-08
 Identities = 16/56 (28%), Positives = 22/56 (39%)

Query: 83  EASLMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPLWRKYIEQVR 138
            A     EE  A   V   +GL   + +   +  G+NE   +E   LW   IEQ  
Sbjct: 3   AAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFE 58


>d1vk3a4 d.139.1.1 (A:508-603) Phosphoribosylformylglycinamidine
          synthase II, domains 2 and 4 {Thermotoga maritima
          [TaxId: 2336]}
          Length = 96

 Score = 25.7 bits (56), Expect = 1.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 39 LIGYNEFCVKEEDPLWRKYIEQVRKSVFLL 68
           +G+N+F ++ E  LWR   +   +  F+L
Sbjct: 10 AVGWNDFELEREKELWRAIRKLSEEGAFIL 39



 Score = 25.7 bits (56), Expect = 1.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 115 LIGYNEFCVKEEDPLWRKYIEQVRKSVFLL 144
            +G+N+F ++ E  LWR   +   +  F+L
Sbjct: 10  AVGWNDFELEREKELWRAIRKLSEEGAFIL 39


>d1alua_ a.26.1.1 (A:) Interleukin-6 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 166

 Score = 24.0 bits (52), Expect = 8.5
 Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 5/44 (11%)

Query: 10 LMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPL 53
          L  +E +  ++R      +    + LR++    +  C   ++ L
Sbjct: 1  LTSSERIDKQIRY-----ILDGISALRKETCNKSNMCESSKEAL 39



 Score = 24.0 bits (52), Expect = 8.5
 Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 5/44 (11%)

Query: 86  LMGAEEVAARLRVDCRSGLWWKEAELRRQLIGYNEFCVKEEDPL 129
           L  +E +  ++R      +    + LR++    +  C   ++ L
Sbjct: 1   LTSSERIDKQIRY-----ILDGISALRKETCNKSNMCESSKEAL 39


>d1na6a2 c.52.1.22 (A:179-398) Restriction endonuclease EcoRII,
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 220

 Score = 24.1 bits (52), Expect = 9.1
 Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 147 YCFPFSTKFSVRFPPGADFIR 167
           Y  P    + +RFP G++ I+
Sbjct: 5   YILP--EDWHLRFPSGSEIIQ 23


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.453 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 679,650
Number of extensions: 30957
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 11
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.5 bits)