RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15155
(185 letters)
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 224 bits (572), Expect = 1e-74
Identities = 62/173 (35%), Positives = 87/173 (50%), Gaps = 3/173 (1%)
Query: 7 IYSLISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLN 66
+ P RK + +IVLITGAG G+GR A EF K S+++ DI EET
Sbjct: 17 YFQGHMPKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCK 76
Query: 67 EIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQ 126
+ + VD N + K V + G V IL+NNAG++ + D QI+
Sbjct: 77 GLG-AKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLF--ATQDPQIE 133
Query: 127 RLFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ F +N+ HF +AFLP M K N GHIV ++S + V AY +SK+A
Sbjct: 134 KTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFA 186
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 173 bits (440), Expect = 3e-54
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 4/168 (2%)
Query: 13 PPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGS 72
+ ++TG SG+G A EF +RG++++ +D+ E+ V L +
Sbjct: 23 DGFLSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRG-QGFD 81
Query: 73 AKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNIN 132
A D+ + + L R G VD++ +NAGI+ + + + + + +I+
Sbjct: 82 AHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLA--QMNHDDWRWVIDID 139
Query: 133 ITGHFRMVRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASKWA 179
+ G V AFLP ++++ GHI +S + + A Y +K+
Sbjct: 140 LWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYG 187
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 167 bits (425), Expect = 9e-52
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQG-SAKA 75
K+ + +TG +G+G L + + +G +V ADI+ + ++ + L G
Sbjct: 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMG 63
Query: 76 YHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITG 135
+D+ + K V FG V IL NNAG+ I + + + L +N+ G
Sbjct: 64 VQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIE--ESSYDDWDWLLGVNLHG 121
Query: 136 HFRMVRAFLPDMVKRNQ------GHIVAISSMSSMTGVANASAYAASKWA 179
V F+P MV+R + GH+V +SM++ + Y +K+A
Sbjct: 122 VVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFA 171
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 164 bits (417), Expect = 6e-51
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 3/164 (1%)
Query: 16 RKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKA 75
+ ++ K V++TGA G+GRE+A K G+ V+ E ++ V E+ SA
Sbjct: 23 PEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHY 82
Query: 76 YHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITG 135
+ + ++ + G +D+LI N T + DI +++ +N
Sbjct: 83 IAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDI--HHVRKSMEVNFLS 140
Query: 136 HFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ + A LP M+K++ G IV +SS++ +AY+ASK+A
Sbjct: 141 YVVLTVAALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFA 183
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 157 bits (400), Expect = 2e-48
Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Query: 13 PPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGS 72
++ ++ ++TG GSG+GR A F K G+ V+ AD+ + +
Sbjct: 19 YFQSMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG----SK 74
Query: 73 AKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNIN 132
A VD+ + + + + +G+VD+L+NNAG T ++ I +E R+ ++N
Sbjct: 75 AFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVV--TIPEETWDRIMSVN 132
Query: 133 ITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ G F + +P M + G I+ +S ++ + +A+ +AY ASK A
Sbjct: 133 VKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGA 179
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 156 bits (397), Expect = 2e-48
Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 1/159 (0%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIG 81
++ ++TGA SG G +A F+ RG +V D+ E EET R D+
Sbjct: 3 RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVA 62
Query: 82 NEASVKELGKNVHRDFGKVDILINNAGILTQFKI-LQTDITDEQIQRLFNINITGHFRMV 140
+E V FG +D+L+NNAGI + + EQ ++ +N+ G F
Sbjct: 63 DEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGC 122
Query: 141 RAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
RA LP M+ + G IV I+S++S+ SAY SK A
Sbjct: 123 RAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGA 161
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 156 bits (397), Expect = 3e-48
Identities = 44/163 (26%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
+ +K+K+V++TGAGSG+GR +A +F S V+ ++ + + V+ L
Sbjct: 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG-MGKEVLGV 61
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+ + V+E + + ++D+L NNAGI+ + +++DE +R+ +N+
Sbjct: 62 KADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPV-AEVSDELWERVLAVNLYSA 120
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
F RA +P M+K+ +G IV +S++ + G + Y +K
Sbjct: 121 FYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHG 163
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 156 bits (396), Expect = 4e-48
Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
K+ K+ L+TGAG +G AL + G+ + D+ E E+ + E + A++Y
Sbjct: 3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVRE-KGVEARSY 61
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+ +E +V +V RDFGK+D L NNAG F + D + R+ IN+TG
Sbjct: 62 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPV-QDYPSDDFARVLTINVTGA 120
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
F +++A M+ +N G IV +SM+ + G N +AY SK A
Sbjct: 121 FHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGA 163
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 155 bits (394), Expect = 7e-48
Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 8/162 (4%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ--GSAKAYH 77
K +ITGAG+G+G+E+A+ F G+ V+ +DI + V EI+Q G A A
Sbjct: 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVD---EIQQLGGQAFACR 66
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
DI +E + L GKVDIL+NNAG K D+ +R + +N+ F
Sbjct: 67 CDITSEQELSALADFAISKLGKVDILVNNAGG-GGPKPF--DMPMADFRRAYELNVFSFF 123
Query: 138 RMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ + P+M K G I+ I+SM++ N ++YA+SK A
Sbjct: 124 HLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAA 165
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 155 bits (395), Expect = 1e-47
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 4/160 (2%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
++K+ +ITGA G+G E + + G++V+ AD+ + A + VD
Sbjct: 10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVG----RGAVHHVVD 65
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ NE SV+ L FG++DI+ NNA +L T +T + F +N G M
Sbjct: 66 LTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLM 125
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ +P ++ G IV ISS ++ ++AYA +K A
Sbjct: 126 CKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAA 165
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 154 bits (392), Expect = 1e-47
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K+ +ITG G+G +A +FV+ G++V+ ++ E+ + + + + D
Sbjct: 5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--PDQIQFFQHD 62
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+E +L + FG V L+NNAGI + + T + ++L +N+ G F
Sbjct: 63 SSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVE--ETTTAEWRKLLAVNLDGVFFG 120
Query: 140 VRAFLPDMVKRNQGH-IVAISSMSSMTGVANASAYAASKWA 179
R + M + G I+ +SS+ G + AY ASK A
Sbjct: 121 TRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGA 161
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 155 bits (393), Expect = 2e-47
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Query: 12 SPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEI-RQ 70
+ P D++VLITG GSGLGR A+ G+++ D+ +E E + + E
Sbjct: 4 TSSPTTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPD 63
Query: 71 GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFN 130
D+ +EA V+ FG++D NNAGI + T + ++ +
Sbjct: 64 AEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPT-ESFTAAEFDKVVS 122
Query: 131 INITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
IN+ G F + L M ++ G +V +S+ + G+ N S YAA+K
Sbjct: 123 INLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHG 171
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 153 bits (390), Expect = 3e-47
Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ--GSAKAYH 77
DK+V+I+G G LG LA ++G+ ++ A E E+ + ++ A +
Sbjct: 10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAK---QVTDTGRRALSVG 66
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
DI ++A V L + +G+VD++INNA + K + T E ++ + + G
Sbjct: 67 TDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPF-ANTTFEHMRDAIELTVFGAL 125
Query: 138 RMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
R+++ F P + + ++G +V ++SM A AY +K A
Sbjct: 126 RLIQGFTPAL-EESKGAVVNVNSMVVRHSQAKYGAYKMAKSA 166
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 153 bits (390), Expect = 4e-47
Identities = 56/160 (35%), Positives = 85/160 (53%), Gaps = 6/160 (3%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K V+ITG GLG E A + V G++V+ AD+ +E T R L +A+ H+D
Sbjct: 4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG----DAARYQHLD 59
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ E + + +FG VD L+NNAGI T + + E+ +++ IN+TG F
Sbjct: 60 VTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLE--TESVERFRKVVEINLTGVFIG 117
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
++ +P M G IV ISS + + G+A S+Y ASKW
Sbjct: 118 MKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWG 157
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 153 bits (389), Expect = 7e-47
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K+ ++TGAG+G+G +A G VLCADI + + + A A VD
Sbjct: 28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIG----CGAAACRVD 83
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ +E + + FG VD L+ NAG++ ++ D T E R+ IN+ G +
Sbjct: 84 VSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLI--DTTVEDFDRVIAINLRGAWLC 141
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ P M++R G IV +SS++ V AY SK
Sbjct: 142 TKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAG 181
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 152 bits (386), Expect = 1e-46
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 8/163 (4%)
Query: 19 IKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ--GSAKAY 76
++ V + GAG +G E+A +F G V E V EI G A
Sbjct: 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVA---EIEAAGGRIVAR 61
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
+D NE V +++ I N G F IL + TD ++++ +
Sbjct: 62 SLDARNEDEVTAFLNAADA-HAPLEVTIFNVGANVNFPIL--ETTDRVFRKVWEMACWAG 118
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
F R M+ QG I + +S+ G + +A+A++K+
Sbjct: 119 FVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFG 161
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 151 bits (384), Expect = 2e-46
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 7/161 (4%)
Query: 19 IKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHV 78
+ +++TGAGSGLGR L + V+RG QV + + ++ +L +
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG----NAVIGIVA 56
Query: 79 DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFR 138
D+ + V G +++++ AG +F + T EQI+R+ N+
Sbjct: 57 DLAHHEDVDVAFAAAVEWGGLPELVLHCAGT-GEFGPVG-VYTAEQIRRVMESNLVSTIL 114
Query: 139 MVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ + + + G + + S ++ G AN S Y ASKW
Sbjct: 115 VAQQTVRLI-GERGGVLANVLSSAAQVGKANESLYCASKWG 154
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 151 bits (385), Expect = 2e-46
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K+ L++G G+G V G++V+ DI +E + L +A+ H+D
Sbjct: 6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA----DAARYVHLD 61
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ A K FG + +L+NNAGIL I D + QR+ ++N+TG F
Sbjct: 62 VTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIE--DYALTEWQRILDVNLTGVFLG 119
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+RA + M + +G I+ ISS+ + G Y A+K+A
Sbjct: 120 IRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFA 159
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 151 bits (385), Expect = 3e-46
Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 7/160 (4%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K+V++TG G G+G + FV G++V+ D + L A D
Sbjct: 8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----PGAVFILCD 62
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ E VK L R FG++D ++NNAG + + + + ++L +N+ G + +
Sbjct: 63 VTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRP-EETSAQGFRQLLELNLLGTYTL 121
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ LP + +++QG+++ ISS+ G A A Y A+K A
Sbjct: 122 TKLALPYL-RKSQGNVINISSLVGAIGQAQAVPYVATKGA 160
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 151 bits (383), Expect = 4e-46
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 9/160 (5%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K VL+TG G+GR +A F + G+ V D+ E + I + VD
Sbjct: 5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDL----RPEGKEVAEAIG---GAFFQVD 57
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ +E + G+VD+L+NNA I + + +R+ +N+T +
Sbjct: 58 LEDERERVRFVEEAAYALGRVDVLVNNAAI-AAPGSA-LTVRLPEWRRVLEVNLTAPMHL 115
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+M K G IV ++S+ + +AY ASK
Sbjct: 116 SALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGG 155
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 151 bits (384), Expect = 4e-46
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 3/161 (1%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGS-AKAY 76
++ + + ++TG SG+G ++ G+ V E L + G+ A
Sbjct: 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFAS 64
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+ + V+ + R G IL+NNAG + + TDE +
Sbjct: 65 VCDVLDALQVRAFAEACERTLGCASILVNNAGQ-GRVSTF-AETTDEAWSEELQLKFFSV 122
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
VRAFLP + R IV ++S+ + + A +A++
Sbjct: 123 IHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAAR 163
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 151 bits (383), Expect = 4e-46
Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 4/160 (2%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+++ ++TG +G + G++V+ AD+ + V L + +D
Sbjct: 12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM-EGHDVSSVVMD 70
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ N SV+ ++VH G+VDIL+ AGI ++ D+TD Q + +IN+ G FR
Sbjct: 71 VTNTESVQNAVRSVHEQEGRVDILVACAGI-CISEVKAEDMTDGQWLKQVDINLNGMFRS 129
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTG--VANASAYAASK 177
+A M+++ QG IVAI SMS + +AY ASK
Sbjct: 130 CQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASK 169
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 151 bits (383), Expect = 6e-46
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+DK+ +ITG G+G A FV+ G++V+ ADI ++ ++ + H D
Sbjct: 15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS--PDVISFVHCD 72
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ + V+ L GK+DI+ N G+L+ + +E +R+ +IN+ G F +
Sbjct: 73 VTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLV 132
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVAN-ASAYAASKWA 179
+ M+ +G IV +S+SS T + Y A+K A
Sbjct: 133 AKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHA 173
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 151 bits (383), Expect = 7e-46
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ--GSAKAYH 77
+D+ L+TG GSG+G+ +A V G+ V+ + V+ L + G+ +
Sbjct: 10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEP 69
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
DI NE V G++ +++ AG ++ T + E +R ++N+ G
Sbjct: 70 TDITNEDETARAVDAVTAWHGRLHGVVHCAGG-SENIGPITQVDSEAWRRTVDLNVNGTM 128
Query: 138 RMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+++ +MV+ G V ISS+++ AY +K A
Sbjct: 129 YVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSA 170
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 150 bits (381), Expect = 7e-46
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 7/160 (4%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ K+ L+TG SG+G E+ + G++V +DI ++ L + D
Sbjct: 5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG----ERSMFVRHD 60
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ +EA + V R G +++L+NNAGIL + E RL IN F
Sbjct: 61 VSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDME--TGRLEDFSRLLKINTESVFIG 118
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ + M K G I+ ++S+SS + + Y+ASK A
Sbjct: 119 CQQGIAAM-KETGGSIINMASVSSWLPIEQYAGYSASKAA 157
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 150 bits (381), Expect = 8e-46
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 9/164 (5%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ K+ LITGAGSG G +A F K G++V+ D E + +A A D
Sbjct: 8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIG----DAALAVAAD 63
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
I EA V + FGKVDIL+NNAGI + + + E+ R+ +N+ G + M
Sbjct: 64 ISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNA-ELVEPEEFDRIVGVNVRGVYLM 122
Query: 140 VRAFLPDMVKRNQGH----IVAISSMSSMTGVANASAYAASKWA 179
+P + I+ ++S + N + Y A+K
Sbjct: 123 TSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGW 166
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 149 bits (379), Expect = 2e-45
Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 13/163 (7%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
+E DK+ ++TG SG+G + V+ G++V+ + + + + +
Sbjct: 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNV-----------SDHF 58
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
+D+ NE VKE + + +G++DIL+NNAGI + E +R+ ++N+ G
Sbjct: 59 KIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLH--LTPTEIWRRIIDVNVNGS 116
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ M + +P M+ G I+ I+S+ S NA+AY SK A
Sbjct: 117 YLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHA 159
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 148 bits (377), Expect = 3e-45
Identities = 43/161 (26%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K++++T A G+G+ AL F + G++V+ DI NE ++ L + + +D
Sbjct: 5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDI----NESKLQELEK--YPGIQTRVLD 58
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ + + + + ++D+L N AG + +L D ++ N+N+ + M
Sbjct: 59 VTKKKQIDQ----FANEVERLDVLFNVAGFVHHGTVL--DCEEKDWDFSMNLNVRSMYLM 112
Query: 140 VRAFLPDMVKRNQGHIVAISSM-SSMTGVANASAYAASKWA 179
++AFLP M+ + G+I+ +SS+ SS+ GV N Y+ +K A
Sbjct: 113 IKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAA 153
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 149 bits (378), Expect = 4e-45
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ--GSAKAYH 77
+ KI ++TGA SG+GR AL F + G++V+ E EI G A A
Sbjct: 7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTD---EIAGGGGEAAALA 63
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
D+G+EA + L + R FG +D NNAG L + + ++ E + + N+T F
Sbjct: 64 GDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEI-SSLSVEGWRETLDTNLTSAF 122
Query: 138 RMVRAFLPDMVKRNQGHIVAISSMS-SMTGVANASAYAASKWA 179
+ +P + G + SS G A + YAASK
Sbjct: 123 LAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAG 165
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 148 bits (376), Expect = 4e-45
Identities = 34/164 (20%), Positives = 74/164 (45%), Gaps = 5/164 (3%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYH 77
E + + +ITGA G+G +A G +V+ + E+ + + +
Sbjct: 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIV 63
Query: 78 V--DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITG 135
+ DI + K++H+ +G VDIL+N A + L + + +++ IN+
Sbjct: 64 LPLDITDCTKADTEIKDIHQKYGAVDILVNAAAM-FMDGSLSEPV--DNFRKIMEINVIA 120
Query: 136 HFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ +++ M + G+I ++S ++ G A+ Y ++K+A
Sbjct: 121 QYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFA 164
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 148 bits (377), Expect = 4e-45
Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 14/163 (8%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
+++DK+V++TGA G+GR +A FV GS+V+ I ++ +
Sbjct: 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSI------------HDPGEAKYDHI 51
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+ N VK ++ +++G + +L+NNAGI + KI ++ + +R+ ++N+ G+
Sbjct: 52 ECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIE--SMSMGEWRRIIDVNLFGY 109
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ + +P M++ IV ISS+ + NASAY SK A
Sbjct: 110 YYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHA 152
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 148 bits (375), Expect = 6e-45
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 4/158 (2%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
D + ++TGA +G+GR +A F K G+ V+ D+++E E + + G A +
Sbjct: 11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQ-AGGKAIGLECN 69
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ +E + + K FGK+ +L+NNAG K D+ + F +N+ FR+
Sbjct: 70 VTDEQHREAVIKAALDQFGKITVLVNNAGG-GGPKPF--DMPMSDFEWAFKLNLFSLFRL 126
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ P M K G I+ ISSM+ ++Y +SK
Sbjct: 127 SQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSK 164
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 148 bits (376), Expect = 7e-45
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 8/164 (4%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ--GSAKAYH 77
+ LITGAGSG+GR AL G V EE EI G A A
Sbjct: 27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVAD---EIVGAGGQAIALE 83
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
D+ +E ++ +++ FG +DI++ NAGI + + D+ + +N+ G F
Sbjct: 84 ADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPI-DDLKPFEWDETIAVNLRGTF 142
Query: 138 RMVRAFLPDMVKRNQGHIVAISSMSSMTGVANA--SAYAASKWA 179
+ +P + +R G IV +SS++ +AY A+K A
Sbjct: 143 LTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAA 186
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 147 bits (373), Expect = 1e-44
Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 16/165 (9%)
Query: 15 PRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAK 74
PR K +L+ G LG E+ F + + D + P +
Sbjct: 16 PRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP-------------NADH 62
Query: 75 AYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINIT 134
++ + E +K + + ++ KVD + AG + +D + ++ + ++N+
Sbjct: 63 SFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNAS-SDEFLKSVKGMIDMNLY 121
Query: 135 GHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
F + G V + +++ + AY A+K A
Sbjct: 122 SAFASAHIGAKLL--NQGGLFVLTGASAALNRTSGMIAYGATKAA 164
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 147 bits (373), Expect = 1e-44
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 6/165 (3%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ--GSAK 74
+ ++ ++TGA G+G +A + G++V+ E R EI G A+
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVER---EIVAAGGEAE 81
Query: 75 AYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINIT 134
++ D+ + ++ V G+ D+L+NNAG+ F + + L +N+
Sbjct: 82 SHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGV-GWFGGPLHTMKPAEWDALIAVNLK 140
Query: 135 GHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ ++RAF P M+ +GHI+ ISS++ VA+ +AY ASKW
Sbjct: 141 APYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWG 185
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 146 bits (372), Expect = 1e-44
Identities = 46/168 (27%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Query: 14 PPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEI--RQG 71
P + + D+I+L+TGA G+GRE A+ + + G+ V+ E + +NE RQ
Sbjct: 5 PKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQP 64
Query: 72 SAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNI 131
+ + ++L + + ++ ++D +++NAG+L + ++ + Q + +
Sbjct: 65 QWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPM-SEQNPQVWQDVMQV 123
Query: 132 NITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
N+ F + +A LP ++K + G +V SS G AN AYAASK+A
Sbjct: 124 NVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFA 171
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 146 bits (371), Expect = 2e-44
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 7/161 (4%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ K LITG+ G+GR A +V+ G+ V ADI E + + +A A +D
Sbjct: 7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG----PAAYAVQMD 62
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ + S+ G +DIL+NNA + + +IT E ++LF IN+ G
Sbjct: 63 VTRQDSIDAAIAATVEHAGGLDILVNNAAL-FDLAPI-VEITRESYEKLFAINVAGTLFT 120
Query: 140 VRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASKWA 179
++A M+ + + G I+ ++S + G A + Y A+K A
Sbjct: 121 LQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAA 161
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 146 bits (370), Expect = 2e-44
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 3/168 (1%)
Query: 14 PPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEI--RQG 71
+ +K +++L+TGA G+G A + G+ V+ E + Q
Sbjct: 7 AHPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQP 66
Query: 72 SAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNI 131
A +++ +EL V +FG++D L++NA I+ L + DE ++ ++
Sbjct: 67 LIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPL-EQLPDEDFMQVMHV 125
Query: 132 NITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
N+ F + RA LP + + I SS G AN AY SK+A
Sbjct: 126 NVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFA 173
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 146 bits (370), Expect = 3e-44
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ--GSAK 74
+ +KDK+ +ITG +G+GR +A F G+ + AD+ E IR
Sbjct: 3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA--PEAEA---AIRNLGRRVL 57
Query: 75 AYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINIT 134
D+ V+ GK V FG+ DIL+NNAGI ++T EQ ++ F IN+
Sbjct: 58 TVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGI-YPLIPF-DELTFEQWKKTFEINVD 115
Query: 135 GHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
F M +AF+P M + G I+ ++S + + + Y ++K
Sbjct: 116 SGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTK 158
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 146 bits (370), Expect = 4e-44
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGS-AKA 75
+ K+ L+TGA G+GR A + +G++V D E + L+E +
Sbjct: 3 HMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLF 62
Query: 76 YHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITG 135
D+ ++ +++ + V FG++DIL+NNAG+ ++ ++ IN+
Sbjct: 63 IQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN----------NEKNWEKTLQINLVS 112
Query: 136 HFRMVRAFLPDMVKRNQGH---IVAISSMSSMTGVANASAYAASKWA 179
L M K+N G I+ +SS++ + VA Y ASK
Sbjct: 113 VISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHG 159
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 145 bits (369), Expect = 7e-44
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYH 77
+ KI ++TGAGSG+GR +A+ G V A + + +ET + A
Sbjct: 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG----DDALCVP 80
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
D+ + SV+ L FG+VD+L NNAG I D+T Q +++ + N+TG F
Sbjct: 81 TDVTDPDSVRALFTATVEKFGRVDVLFNNAGT-GAPAIPMEDLTFAQWKQVVDTNLTGPF 139
Query: 138 RMVRAFLPDMVKRNQ--GHIVAISSMSSMTGVANASAYAASKWA 179
+ M + G I+ S+S+ + ++ Y A+K A
Sbjct: 140 LCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHA 183
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 145 bits (368), Expect = 7e-44
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 2/160 (1%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYH 77
I K+ +ITG+ SG+G +A F K G+ ++ Q + E R L E
Sbjct: 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVA 63
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
VD+ V + ++V FG DIL+NNAG + + + DE+ Q + + +
Sbjct: 64 VDVATPEGVDAVVESVRSSFGGADILVNNAGT-GSNETI-MEAADEKWQFYWELLVMAAV 121
Query: 138 RMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
R+ R +P M R G I+ +S+ ++ + Y +K
Sbjct: 122 RLARGLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTK 161
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 144 bits (367), Expect = 8e-44
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ--GSAKAYH 77
++K+ ++TG+G G+G+ A + G+ V+ ADI E E + +I G+A +
Sbjct: 8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAK---QIVADGGTAISVA 64
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKI-LQTDITDEQIQRLFNINITGH 136
VD+ + S K + +FG +D L+NNA I K+ I E ++ ++N+ G
Sbjct: 65 VDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGA 124
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
RA M KR G IV SS ++ Y +K
Sbjct: 125 LWCTRAVYKKMTKRGGGAIVNQSSTAAWLYSNY---YGLAK 162
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 145 bits (369), Expect = 8e-44
Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 3/170 (1%)
Query: 12 SPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQG 71
+ + +I L+TG G+G+GR +A G V+ + + + +
Sbjct: 24 MAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGN 83
Query: 72 SAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNI 131
+A D+G+ V L V +F ++D+L+NNAG L ++T EQ +
Sbjct: 84 IVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPL-EEVTFEQWNGIVAA 142
Query: 132 NITGHFRMVRAFLPDMVKRNQ--GHIVAISSMSSMTGVANASAYAASKWA 179
N+TG F + M + G I+ S+S+ T N++ Y A+K A
Sbjct: 143 NLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHA 192
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 145 bits (368), Expect = 1e-43
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 3/161 (1%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K LITGA G+G ++A F G++++ + + R L E +D
Sbjct: 19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAID 78
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ + EL + FG +D+L+NNAGI D + +N+ +
Sbjct: 79 LAEPDAPAELARRAAEAFGGLDVLVNNAGI--SHPQPVVDTDPQLFDATIAVNLRAPALL 136
Query: 140 VRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASKWA 179
A MV + G I+ ++S +++ + + AY SK
Sbjct: 137 ASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAG 177
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 144 bits (366), Expect = 2e-43
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 4/167 (2%)
Query: 13 PPPRKEIKDKIVLITGA-GSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQG 71
+K K+VL+T A G+G+G A + G+ V+ +D ET L ++ G
Sbjct: 14 IDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLG 73
Query: 72 SAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNI 131
+A D+ + +V L G++D+L+NNAG+ + D+TDE+ R+ N+
Sbjct: 74 RVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGL-GGQTPV-VDMTDEEWDRVLNV 131
Query: 132 NITGHFRMVRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASK 177
+T R RA L + G IV +S+ + S YAA+K
Sbjct: 132 TLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAK 178
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 144 bits (365), Expect = 2e-43
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 8/161 (4%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQ--GSAKAY 76
++K L+TG+ G+G+ A+ + G ++ +++ ET EI +
Sbjct: 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAE---EIEKLGVKVLVV 59
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
++G A +KE+ + + FG++D+ +NNA + + ++ + NIN
Sbjct: 60 KANVGQPAKIKEMFQQIDETFGRLDVFVNNAAS-GVLRPV-MELEETHWDWTMNINAKAL 117
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ M K GHIV+ISS+ S+ + N + SK
Sbjct: 118 LFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSK 158
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 145 bits (367), Expect = 2e-43
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNE--IRQGSAKAYH 77
K V+ITG+ +G+GR A+ F K G+QV + EET + + + + A
Sbjct: 25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVV 84
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
D+ + ++ FGK+DIL+NNAG TD E Q+ F +N
Sbjct: 85 ADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI 144
Query: 138 RMVRAFLPDMVKRNQGHIVAISSM-SSMTGVANASAYAASKWA 179
M + ++K +G IV +SS+ + + YA +K A
Sbjct: 145 EMTQKTKEHLIKT-KGEIVNVSSIVAGPQAHSGYPYYACAKAA 186
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 144 bits (365), Expect = 2e-43
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
KI +ITGA SG+G A FV G++V + + + + + G A D
Sbjct: 28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG----GGAVGIQAD 83
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
N A + L + V + G++D+L NAG + + ++T+EQ F+ N+ G
Sbjct: 84 SANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLG--EVTEEQYDDTFDRNVKGVLFT 141
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
V+ LP + +V S + TG S YAASK A
Sbjct: 142 VQKALPLL--ARGSSVVLTGSTAGSTGTPAFSVYAASKAA 179
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 143 bits (364), Expect = 4e-43
Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 3/160 (1%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K K+ +TG+ G+G +A + + G+ V + +E+ + +KAY +
Sbjct: 33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKT-YGVHSKAYKCN 91
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
I + SV+E +DFG +D+ + NAG+ + ++ ++++ G +
Sbjct: 92 ISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYC 151
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVA--NASAYAASK 177
K +G ++ SS+S + Y +K
Sbjct: 152 SHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAK 191
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 143 bits (363), Expect = 5e-43
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 2/166 (1%)
Query: 14 PPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSA 73
RK +++K+ L+T + G+G +A + G+ V+ + + E + TV L S
Sbjct: 7 ERRKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG-EGLSV 65
Query: 74 KAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINI 133
+G + L G VDIL++NA + F D T+E ++ ++N+
Sbjct: 66 TGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAV-NPFFGNIIDATEEVWDKILHVNV 124
Query: 134 TGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
M +A +P+M KR G ++ +SS+ + N Y SK A
Sbjct: 125 KATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTA 170
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 142 bits (361), Expect = 7e-43
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ--GSAKAYHVD 79
K+ L+TGAG G+G+ +AL VK G V AD + + EI Q G A A VD
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVAS---EINQAGGHAVAVKVD 59
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ + V + + G D+++NNAG+ + IT E + +++NIN+ G
Sbjct: 60 VSDRDQVFAAVEQARKTLGGFDVIVNNAGV-APSTPI-ESITPEIVDKVYNINVKGVIWG 117
Query: 140 VRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASKWA 179
++A + K G I+ S + G + Y++SK+A
Sbjct: 118 IQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFA 158
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 143 bits (362), Expect = 7e-43
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 7/161 (4%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ ++TG G+G +A K G+ V AD+ + V L + A VD
Sbjct: 11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL----ENGGFAVEVD 66
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ ASV + G D+L NAG+ + + DITDE+ F++N G F
Sbjct: 67 VTKRASVDAAMQKAIDALGGFDLLCANAGV-STMRPA-VDITDEEWDFNFDVNARGVFLA 124
Query: 140 VRAFLPDMVK-RNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ + +G IV +S+++ G + Y+ASK+A
Sbjct: 125 NQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFA 165
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 143 bits (362), Expect = 9e-43
Identities = 49/163 (30%), Positives = 69/163 (42%), Gaps = 8/163 (4%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
++ LITG SGLGR L FV G++V D E E G+A D
Sbjct: 4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG----GNAVGVVGD 59
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQT---DITDEQIQRLFNINITGH 136
+ + K + FGK+D LI NAGI L D D +F++N+ G+
Sbjct: 60 VRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGY 119
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
V+A LP +V +G +V S + Y A+K A
Sbjct: 120 IHAVKACLPALVSS-RGSVVFTISNAGFYPNGGGPLYTATKHA 161
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 142 bits (361), Expect = 1e-42
Identities = 45/165 (27%), Positives = 85/165 (51%), Gaps = 9/165 (5%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQ--GSA 73
K+++ K+V+ITG+ +GLG+ +A+ F ++V+ E + EI++ G A
Sbjct: 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLE---EIKKVGGEA 59
Query: 74 KAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINI 133
A D+ E+ V L ++ ++FGK+D++INNAG+ +++ ++ + N+
Sbjct: 60 IAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGL-ENPVSS-HEMSLSDWNKVIDTNL 117
Query: 134 TGHFRMVRAFLPDMVK-RNQGHIVAISSMSSMTGVANASAYAASK 177
TG F R + V+ +G ++ +SS+ YAASK
Sbjct: 118 TGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASK 162
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 142 bits (360), Expect = 1e-42
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ K+ L+TGA G+G + G++V AD + + D
Sbjct: 27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADR----AVAGI--------AADLHLPGD 74
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ A L V G++DI++NNAG++++ +I + TD +N+ FR+
Sbjct: 75 LREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRIT--ETTDADWSLSLGVNVEAPFRI 132
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
RA +P M G IV ++S + + Y +K
Sbjct: 133 CRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTK 170
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 142 bits (359), Expect = 1e-42
Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 14/166 (8%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYH 77
++ +K V+ A G+G + + E VKR + + E + + + +
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHT 61
Query: 78 VDI-GNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+ A K+L K + VDILIN AGIL D QI+R IN TG
Sbjct: 62 YDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL----------DDHQIERTIAINFTGL 111
Query: 137 FRMVRAFLPDMVKRNQGH---IVAISSMSSMTGVANASAYAASKWA 179
A L KR G I I S++ + Y+ASK A
Sbjct: 112 VNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAA 157
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 141 bits (358), Expect = 2e-42
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 8/160 (5%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ K ++ G G+G V+ G++VL A D
Sbjct: 7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG----PRVHALRSD 62
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
I + + LG + G +D+L NAG+ ++ + +++ R F +N G F
Sbjct: 63 IADLNEIAVLGAAAGQTLGAIDLLHINAGV-SELEPFD-QVSEASYDRQFAVNTKGAFFT 120
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
V+ P + R G IV SS++ G S Y+ASK A
Sbjct: 121 VQRLTPLI--REGGSIVFTSSVADEGGHPGMSVYSASKAA 158
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 141 bits (358), Expect = 3e-42
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNE--IRQGSAKAYH 77
+K+ +ITG+ +G+GR A+ F + G++V E EET + + + + + +
Sbjct: 5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVV 64
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQT--DITDEQIQRLFNINITG 135
D+ +A E+ FGK+DIL+NNAG +T + E N+N+
Sbjct: 65 ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRS 124
Query: 136 HFRMVRAFLPDMVKRNQGHIVAISSMSS-MTGVANASAYAASKWA 179
+ + +P + +G IV ISS++S + + Y+ +K A
Sbjct: 125 VIALTKKAVPHLSST-KGEIVNISSIASGLHATPDFPYYSIAKAA 168
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 141 bits (357), Expect = 4e-42
Identities = 36/161 (22%), Positives = 73/161 (45%), Gaps = 4/161 (2%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K L+TG G+G + E G++V + +E + + E + + + D
Sbjct: 20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE-KGLNVEGSVCD 78
Query: 80 IGNEASVKELGKNVHRDF-GKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFR 138
+ + +L + V F GK++IL+NNAG+ D T++ + N +
Sbjct: 79 LLSRTERDKLMQTVAHVFDGKLNILVNNAGV--VIHKEAKDFTEKDYNIIMGTNFEAAYH 136
Query: 139 MVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ + P + G+++ +SS++ + + + S Y+ASK A
Sbjct: 137 LSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGA 177
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 140 bits (355), Expect = 5e-42
Identities = 34/157 (21%), Positives = 82/157 (52%), Gaps = 8/157 (5%)
Query: 21 DKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDI 80
++ V++TG G G+G+++ L+F++ G +V DI + + + + + +H D+
Sbjct: 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKER-----PNLFYFHGDV 56
Query: 81 GNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMV 140
+ ++K+ + ++D+L+NNA IL + + E+ + ++ + + +
Sbjct: 57 ADPLTLKKFVEYAMEKLQRIDVLVNNACR-GSKGIL-SSLLYEEFDYILSVGLKAPYELS 114
Query: 141 RAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
R +++K N+G I+ I+S + ++ AYA++K
Sbjct: 115 RLCRDELIK-NKGRIINIASTRAFQSEPDSEAYASAK 150
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 140 bits (355), Expect = 8e-42
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 3/162 (1%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
+++ + V++TG G+GR +A F + G+ V A + V L+++ G
Sbjct: 6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGV 65
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+ + A L +FG +D++ NAG+ L +T EQ+ +F +N+ G
Sbjct: 66 QTDVSDRAQCDALAGRAVEEFGGIDVVCANAGV-FPDAPLA-TMTPEQLNGIFAVNVNGT 123
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMS-SMTGVANASAYAASK 177
F V+A L ++ G +V SS++ +TG S Y A+K
Sbjct: 124 FYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATK 165
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 139 bits (353), Expect = 9e-42
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 4/158 (2%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIG 81
K++L+TG G+G+ + + + +E ++ L E DI
Sbjct: 3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVAR--SEAPLKKLKEKYGDRFFYVVGDIT 60
Query: 82 NEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMVR 141
++ +K+L + GK+D L+ NAG+L + + +I ++L++IN +V
Sbjct: 61 EDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVN-EIDVNAWKKLYDINFFSIVSLVG 119
Query: 142 AFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
LP++ K N G++V +SS + ++ AY +SK A
Sbjct: 120 IALPELKKTN-GNVVFVSSDACNMYFSSWGAYGSSKAA 156
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 140 bits (355), Expect = 1e-41
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 3/159 (1%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVR-MLNEIRQGSAKAYHV 78
K +ITG+ SG+G +A K G+ ++ TV + + G+ +
Sbjct: 24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPA 83
Query: 79 DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFR 138
D+ + + ++ V FG DIL+NNAG+ QF D EQ R+ +N++ F
Sbjct: 84 DMTKPSEIADMMAMVADRFGGADILVNNAGV--QFVEKIEDFPVEQWDRIIAVNLSSSFH 141
Query: 139 MVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+R +P M K+ G I+ I+S + SAY A+K
Sbjct: 142 TIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAK 180
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 139 bits (353), Expect = 2e-41
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 2/158 (1%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+DK+ ITG GSG+G +A F++ G + A R L +D
Sbjct: 26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMD 85
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ +V ++FG++DILIN A F ++ + + +I+ +G F +
Sbjct: 86 VRAPPAVMAAVDQALKEFGRIDILINCAAG--NFLCPAGALSFNAFKTVMDIDTSGTFNV 143
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
R + + G IV I++ G A ++K
Sbjct: 144 SRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAK 181
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 139 bits (352), Expect = 2e-41
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 19/182 (10%)
Query: 4 PEFIYSLISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVR 63
P F S +K +++TG G+G G+ V E
Sbjct: 6 PGFTISF---------VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTE 56
Query: 64 MLNEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDE 123
+ + KAY D+ N V + + + D G + LI NAG+ ++T E
Sbjct: 57 KVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPAT--ELTHE 114
Query: 124 QIQRLFNINITGHFRMVRAFLPDMVKRNQ-GHIVAISSMS-------SMTGVANASAYAA 175
++++N+ G F RA +++ Q G IV SSMS S+ G Y +
Sbjct: 115 DFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNS 174
Query: 176 SK 177
SK
Sbjct: 175 SK 176
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 138 bits (351), Expect = 2e-41
Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 8/156 (5%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIG 81
++T G AL + G V C D + +E + + +
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDE-------LEAFAETYPQLKPM 54
Query: 82 NEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMVR 141
+E EL + V +G+VD+L++N E + F +V
Sbjct: 55 SEQEPAELIEAVTSAYGQVDVLVSNDIF-APEFQPIDKYAVEDYRGAVEALQIRPFALVN 113
Query: 142 AFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
A M KR GHI+ I+S + S Y +++
Sbjct: 114 AVASQMKKRKSGHIIFITSATPFGPWKELSTYTSAR 149
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 138 bits (351), Expect = 3e-41
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 10/165 (6%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQ--GSA 73
+ ++ +++ GAG +GR A+ F + G+ V+ V EI + SA
Sbjct: 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVA---EIEKLGRSA 60
Query: 74 KAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINI 133
A D+ N A V+ FG++ L++ AG L K + ++ + ++ ++N+
Sbjct: 61 LAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTI-AEMDEAFWHQVLDVNL 119
Query: 134 TGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVAN-ASAYAASK 177
T F + LP M K G IV SS + G A AYA SK
Sbjct: 120 TSLFLTAKTALPKMAK--GGAIVTFSSQAGRDGGGPGALAYATSK 162
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 139 bits (352), Expect = 3e-41
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 23/180 (12%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ--GSAKAYH 77
K LITGA +G+G+++AL + + G+QV A ++ + EI G A
Sbjct: 31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVAD---EIAGVGGKALPIR 87
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
D+ V+ + + + G +DI + NAGI++ +L D+ E+ QR+ + N+TG F
Sbjct: 88 CDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAML--DMPLEEFQRIQDTNVTGVF 145
Query: 138 RMVRAFLPDMVKRNQ-GHIVAISSMSSMTGVA--NASAYAASK-------------WARY 181
+A MV + G I+ +SMS S Y SK A +
Sbjct: 146 LTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPH 205
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 139 bits (352), Expect = 3e-41
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNE--IRQGSAKAYH 77
+K V+ITG+ +G+GR A+ F + G+ V +E EET +++ + + + +
Sbjct: 5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV 64
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQT--DITDEQIQRLFNINITG 135
D+ E ++ + + FGK+D+L+NNAG T D + + +N+
Sbjct: 65 ADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQA 124
Query: 136 HFRMVRAFLPDMVKRNQGHIVAISSMSS-MTGVANASAYAASK 177
M + P +V +G IV +SS+ + + YA +K
Sbjct: 125 VIEMTKKVKPHLVAS-KGEIVNVSSIVAGPQAQPDFLYYAIAK 166
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 139 bits (352), Expect = 4e-41
Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN------------EETVRMLNE 67
+ K+ ITGA G GR A+ + G+ ++ D+ + + ETVR +
Sbjct: 27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVR---Q 83
Query: 68 IRQ--GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQI 125
+ A VD+ + +++ + G++DI++ NA + ++ L + +
Sbjct: 84 VEALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRL-NRMDPKTW 142
Query: 126 QRLFNINITGHFRMVRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASKWA 179
+ + ++N+ G + R +P ++ + G IV SS+ + G N Y ASK
Sbjct: 143 RDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHG 197
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 138 bits (350), Expect = 4e-41
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 20 KDKIVLITGAG--SGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQGSAKAY 76
K K+V++TGA G+G E A + G+ V EE V+ L + AKAY
Sbjct: 19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAY 78
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
+ + S ++L K+V DFG++D I NAG IL D + E + +++ G
Sbjct: 79 KCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGIL--DGSVEAWNHVVQVDLNGT 136
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTG--VANASAYAASK 177
F +A +R G +V +SMS ++Y +K
Sbjct: 137 FHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAK 179
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 138 bits (350), Expect = 5e-41
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ ++ L+TG GLG +A + G V+ A E E + L E A+ D
Sbjct: 20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCD 79
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ N VK+L + V FGK+D ++N AGI + + ++ +++ +N+ G + +
Sbjct: 80 VSNYEEVKKLLEAVKEKFGKLDTVVNAAGI--NRRHPAEEFPLDEFRQVIEVNLFGTYYV 137
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMT-GVANASAYAASK-------------WARY 181
R + + + I+ I S++ + N SAYAASK W RY
Sbjct: 138 CREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRY 193
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 138 bits (349), Expect = 5e-41
Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 21/177 (11%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+TGAGSG+G E+ F G++++ D + + + E+ A D
Sbjct: 10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQ---ELGAAVAARIVAD 66
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ + ++ V IL+N+AGI + D +++ +N+ G F
Sbjct: 67 VTDAEAMTAAAAEAEA-VAPVSILVNSAGI--ARLHDALETDDATWRQVMAVNVDGMFWA 123
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVA--NASAYAASK-------------WARY 181
RAF MV R G IV + SMS AS+Y ASK WA
Sbjct: 124 SRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGR 180
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 138 bits (349), Expect = 5e-41
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQ--GSA 73
++K K VLITG+ G+G A F + G++V + N +ET+ +R G A
Sbjct: 3 PDLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIA---SMRADGGDA 59
Query: 74 KAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINI 133
+ D+ + ++L FG +D+LINNAG L K L +I D + + NI
Sbjct: 60 AFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPL-PEIDDTFYDAVMDANI 118
Query: 134 TGHFRMVRAFLPDMVKRNQ-----GHIVAISSMS-SMTGVANASAYAASK 177
+ LP + + +++ S++ G A Y A+K
Sbjct: 119 RSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLYGAAK 168
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 138 bits (351), Expect = 6e-41
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
++ + VL+TG G+GR +A F + G+ V A L E+ G+
Sbjct: 37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGV 96
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
+D+ + S + + V FG +D++ NAGI L +T EQ+ + ++N+ G
Sbjct: 97 RLDVSDPGSCADAARTVVDAFGALDVVCANAGI-FPEARLD-TMTPEQLSEVLDVNVKGT 154
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMS-SMTGVANASAYAASK 177
V+A L + +G ++ SS++ +TG S Y ASK
Sbjct: 155 VYTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASK 196
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 137 bits (348), Expect = 7e-41
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K+K+V+ITG SG+G+ +A F K G++V+ E EE + + G +D
Sbjct: 5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF-PGQILTVQMD 63
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ N ++++ + + FG++DILINNA F D++ + NI + G F
Sbjct: 64 VRNTDDIQKMIEQIDEKFGRIDILINNAAG--NFICPAEDLSVNGWNSVINIVLNGTFYC 121
Query: 140 VRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASK 177
+A +++ G+I+ + + + AA+K
Sbjct: 122 SQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAK 160
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 138 bits (349), Expect = 9e-41
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 23/179 (12%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN----------------EETVR 63
+ K+ +TGA G GR A+ + G+ ++ DI ET
Sbjct: 10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETAD 69
Query: 64 MLNEIRQ--GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDIT 121
++ VD+ + ++K + G++DI++ NAGI L +
Sbjct: 70 ---LVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTL-DKTS 125
Query: 122 DEQIQRLFNINITGHFRMVRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASKWA 179
+E + +IN+ G ++ V+A +P M+ + G I+ SS+ + + Y A+K
Sbjct: 126 EEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHG 184
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 136 bits (346), Expect = 9e-41
Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 18/161 (11%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCA-DIQNEPNEETVRMLNEIRQGSAKAYHV 78
L+TG G+G+ + ++ + + DIQ + E K
Sbjct: 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAEN-----------LKFIKA 51
Query: 79 DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFR 138
D+ + + + + D + NAGIL + I DI E I+++ ++N+
Sbjct: 52 DLTKQQDITNVLDIIK--NVSFDGIFLNAGILIKGSIF--DIDIESIKKVLDLNVWSSIY 107
Query: 139 MVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
++ ++ + IV S N+ AY SK A
Sbjct: 108 FIKGLENNL--KVGASIVFNGSDQCFIAKPNSFAYTLSKGA 146
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 137 bits (347), Expect = 1e-40
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 17/176 (9%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K L+TG+ GLG A G++V+ DI+ E+V L + A D
Sbjct: 8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTR-KGYDAHGVAFD 66
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ +E +++ + + VDILINNAGI Q++ ++ E Q++ + N+T F +
Sbjct: 67 VTDELAIEAAFSKLDAEGIHVDILINNAGI--QYRKPMVELELENWQKVIDTNLTSAFLV 124
Query: 140 VRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASK-------------WARY 181
R+ M+ RN G I+ I S++S + Y A+K WA++
Sbjct: 125 SRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQF 180
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 136 bits (345), Expect = 1e-40
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 7/162 (4%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYH 77
E VLITGA G+G A +G +V + + E+ A
Sbjct: 2 EGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALA---AEL--EGALPLP 56
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
D+ E + FG++ L+NNAG+ + + + E+ + + + N+TG F
Sbjct: 57 GDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTL--EEWRLVLDTNLTGAF 114
Query: 138 RMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+R +P +++R G IV + S++ +AY ASK+
Sbjct: 115 LGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFG 156
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 137 bits (348), Expect = 1e-40
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-------------EETVRMLN 66
+ ++ ITGA G GR A+ G+ ++ DI + ETVR
Sbjct: 10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVR--- 66
Query: 67 EIRQ--GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQ 124
+ A VD + ++++ + G++DI++ NAG+ DIT E
Sbjct: 67 LVEAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWD--DITPED 124
Query: 125 IQRLFNINITGHFRMVRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASKWA 179
+ + +IN+TG + V A P +++ + G I+ ISS + M Y ASK A
Sbjct: 125 FRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHA 180
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 137 bits (347), Expect = 1e-40
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 12/157 (7%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ K+V+ITGA G+G L + R +V+ +P+ + D
Sbjct: 27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD----------PDIHTVAGD 76
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
I + + + FG++D L+NNAG+ K ++T E +N+ G F +
Sbjct: 77 ISKPETADRIVREGIERFGRIDSLVNNAGV-FLAKPF-VEMTQEDYDHNLGVNVAGFFHI 134
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAAS 176
+ +M+K+ GHIV+I++ + + AS
Sbjct: 135 TQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALAS 171
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 136 bits (346), Expect = 1e-40
Identities = 40/163 (24%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN--EETVRMLNEIRQ--GSAKAYH 77
K+ ++TG G+GR ++ + G + AD+ + ET++ I A
Sbjct: 3 KVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIK---LIEAADQKAVFVG 59
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
+D+ ++A+ G D+L+NNAGI Q K L ++T+E +++++++N+ F
Sbjct: 60 LDVTDKANFDSAIDEAAEKLGGFDVLVNNAGI-AQIKPL-LEVTEEDLKQIYSVNVFSVF 117
Query: 138 RMVRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASKWA 179
++A + G I+ +S++++ G SAY+ +K+A
Sbjct: 118 FGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFA 160
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 137 bits (348), Expect = 1e-40
Identities = 47/176 (26%), Positives = 88/176 (50%), Gaps = 21/176 (11%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-------------EETVRMLN 66
+ ++ ITGA G GR A+ G+ ++ DI + +ET R
Sbjct: 14 QGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETAR--- 70
Query: 67 EIRQ--GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQ 124
+ A +D+ ++A+++EL + FG++D+++ NAG+L+ ++ ++TDEQ
Sbjct: 71 LVEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVW--ELTDEQ 128
Query: 125 IQRLFNINITGHFRMVRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASKWA 179
+ +N+TG +R +RA +P M++ G IV +SS + + Y+ASK
Sbjct: 129 WDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHG 184
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 136 bits (346), Expect = 2e-40
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 4/159 (2%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ L+TG G+G + E G+ V + + + + +A D
Sbjct: 8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS-KGFKVEASVCD 66
Query: 80 IGNEASVKELGKNVHRDF-GKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFR 138
+ + + +EL V F GK++IL+NNAGI D T E + +IN +
Sbjct: 67 LSSRSERQELMNTVANHFHGKLNILVNNAGI--VIYKEAKDYTVEDYSLIMSINFEAAYH 124
Query: 139 MVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ P + +G++V ISS+S V + Y A+K
Sbjct: 125 LSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATK 163
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 136 bits (345), Expect = 2e-40
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 3/159 (1%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQN-EPNEETVRMLNEIRQGSAKAYHV 78
K K+ ++TG+ SG+G +A +G+ ++ + E+ L
Sbjct: 3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGA 62
Query: 79 DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFR 138
D+ +V+ L N R G++DIL+NNAGI Q L D E+ + +N++ F
Sbjct: 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGI--QHTALIEDFPTEKWDAILALNLSAVFH 120
Query: 139 MVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
A LP M K+ G I+ I+S + AN SAY A+K
Sbjct: 121 GTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAK 159
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 136 bits (344), Expect = 2e-40
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 13/160 (8%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYH 77
+ K V +TGAG G+G AL FV+ G++V D +
Sbjct: 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQ-----------YPFATEV 52
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
+D+ + A V ++ + + + ++D L+N AGI + ++ E Q+ F +N+ G F
Sbjct: 53 MDVADAAQVAQVCQRLLAETERLDALVNAAGI-LRMGAT-DQLSKEDWQQTFAVNVGGAF 110
Query: 138 RMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ + + ++ G IV ++S ++ T SAY ASK
Sbjct: 111 NLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASK 150
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 136 bits (346), Expect = 3e-40
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K KI L+TGA G+G +A + K G+ ++ DI E + + +A Y D
Sbjct: 33 KGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKA-AGINAHGYVCD 91
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ +E ++ + + + G +DIL+NNAGI ++ ++T Q +++ +I++ F +
Sbjct: 92 VTDEDGIQAMVAQIESEVGIIDILVNNAGI--IRRVPMIEMTAAQFRQVIDIDLNAPFIV 149
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+A +P M+K+ G I+ I SM S G SAYAA+K
Sbjct: 150 SKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAK 187
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 136 bits (344), Expect = 4e-40
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIG 81
K+ L+TGA SG GR +A V G V+ E + L A+A +D+
Sbjct: 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTA----RRTEALDDLVAAYPDRAEAISLDVT 61
Query: 82 NEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMVR 141
+ + + +V +G+VD+L+NNAG + T+ +++ LF +++ G R+ R
Sbjct: 62 DGERIDVVAADVLARYGRVDVLVNNAGRTQVGAF--EETTERELRDLFELHVFGPARLTR 119
Query: 142 AFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
A LP M +R G +V ISS A SAY+A+K A
Sbjct: 120 ALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAA 157
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 134 bits (341), Expect = 5e-40
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 12/161 (7%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ VL+TGAG G+GR G++V+ + VR + VD
Sbjct: 6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC-----PGIEPVCVD 60
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+G+ + + G VD+L+NNA + ++T E R F +N+ ++
Sbjct: 61 LGDWEATER----ALGSVGPVDLLVNNAAV--ALLQPFLEVTKEAFDRSFEVNLRAVIQV 114
Query: 140 VRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASKWA 179
+ ++ R G IV +SS S V N S Y ++K A
Sbjct: 115 SQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGA 155
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 136 bits (344), Expect = 7e-40
Identities = 32/176 (18%), Positives = 70/176 (39%), Gaps = 16/176 (9%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ K+ ITG G+GLG+ + G+Q + A + + + T ++ A D
Sbjct: 25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCD 84
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ + V+ + + G +I+INNA F ++ + + +I + G +
Sbjct: 85 VRDPDMVQNTVSELIKVAGHPNIVINNAAG--NFISPTERLSPNAWKTITDIVLNGTAFV 142
Query: 140 VRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASK-------------WARY 181
++K + ++I+++ + TG A++K W +Y
Sbjct: 143 TLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWGKY 198
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 134 bits (340), Expect = 8e-40
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 14/168 (8%)
Query: 21 DKIVLITGAGSGLGRELALEFVKRG-------SQVLCADIQNEPNEETVRMLNEIRQ--G 71
I+LITGAG G+GR +ALEF + ++ + E+ E R
Sbjct: 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKIS---LECRAEGA 58
Query: 72 SAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNI 131
DI + A V+ L ++ +G +D L+NNAG+ +F L D+T+E N
Sbjct: 59 LTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGV-GRFGALS-DLTEEDFDYTMNT 116
Query: 132 NITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
N+ G F + +A M +++ GHI I+S+++ ++S Y SK+
Sbjct: 117 NLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFG 164
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 134 bits (339), Expect = 1e-39
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 5/158 (3%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K K L+TG+ SG+G +A + G+ ++ + + + A + D
Sbjct: 3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARH-GVKAVHHPAD 59
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ + A ++ L R+FG VDIL+NNAGI Q E ++ +N++ F
Sbjct: 60 LSDVAQIEALFALAEREFGGVDILVNNAGI--QHVAPVEQFPLESWDKIIALNLSAVFHG 117
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
R LP M RN G I+ I+S+ + G +AY A+K
Sbjct: 118 TRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAK 155
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 133 bits (338), Expect = 1e-39
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 12/161 (7%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
L+TGAG G+GR+ G++V+ N + + VD
Sbjct: 6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC-----PGIEPVCVD 60
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+G+ + ++ G VD+L+NNA + ++T E R F++N+ F++
Sbjct: 61 LGDWDATEK----ALGGIGPVDLLVNNAAL--VIMQPFLEVTKEAFDRSFSVNLRSVFQV 114
Query: 140 VRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASKWA 179
+ DM+ R G IV +SSM + N Y+++K A
Sbjct: 115 SQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGA 155
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 133 bits (338), Expect = 3e-39
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K K VL+TG G+G + EF G+ + E + + + D
Sbjct: 13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK-KGFQVTGSVCD 71
Query: 80 IGNEASVKELGKNVHRDFG-KVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFR 138
++L + V FG K+DILINN G + K D T E + N+ +
Sbjct: 72 ASLRPEREKLMQTVSSMFGGKLDILINNLGA-IRSKPT-LDYTAEDFSFHISTNLESAYH 129
Query: 139 MVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ + P + G+I+ +SS++ + + S Y+A+K A
Sbjct: 130 LSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGA 170
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 134 bits (339), Expect = 4e-39
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 7/162 (4%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ----GSAKA 75
+ ++ ++TG +G+G+ + E ++ GS V+ A + E + L
Sbjct: 17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIP 76
Query: 76 YHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITG 135
+I NE V L K+ FGK++ L+NN G QF I+ + + N+TG
Sbjct: 77 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG--QFLSPAEHISSKGWHAVLETNLTG 134
Query: 136 HFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
F M +A +K + G IV I + G A A++
Sbjct: 135 TFYMCKAVYSSWMKEHGGSIVNIIVP-TKAGFPLAVHSGAAR 175
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 133 bits (336), Expect = 5e-39
Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 9/158 (5%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+LITGA +G AL ++ G +V+ + + E+RQ A A + D
Sbjct: 26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVT------ELRQAGAVALYGD 79
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
E + + + +++NA + + R+F++++ + +
Sbjct: 80 FSCETGIMAFIDLLKTQTSSLRAVVHNASE---WLAETPGEEADNFTRMFSVHMLAPYLI 136
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
P + IV IS + G + AY A+K
Sbjct: 137 NLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATK 174
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 132 bits (335), Expect = 5e-39
Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 8/157 (5%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIG 81
I L+T A G + G V+C D E R ++
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFE-------SENPGTIAL 54
Query: 82 NEASVKELGKNVHRDFGKVDILINNAGILTQFKILQ-TDITDEQIQRLFNINITGHFRMV 140
E + L + +D +++N I L ++ I+++F ++
Sbjct: 55 AEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLL 114
Query: 141 RAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
++ + + ++ I+S +A Y ++
Sbjct: 115 QSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPAR 151
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 132 bits (335), Expect = 7e-39
Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 11/165 (6%)
Query: 19 IKDKIVLITGAGSGLGRELALEFVKRGSQV-LCADIQNEPNEETVRML-NEIRQ--GSAK 74
+ DK++LITGA G+G +A E G+++ L A + + + EIR G+A
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGAR-----RQARIEAIATEIRDAGGTAL 56
Query: 75 AYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINIT 134
A +D+ + SV + +G++D+L+NNAG++ + + + +R+ ++NI
Sbjct: 57 AQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDE--WERMIDVNIK 114
Query: 135 GHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
G + A LP M + G I+ I S+ +++ V A+ Y A+K+A
Sbjct: 115 GVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFA 159
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 132 bits (335), Expect = 8e-39
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 10/168 (5%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLN----EIRQ--GSA 73
K + ITGA G+G +AL + G+ V A N + ++ + G
Sbjct: 5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQG 64
Query: 74 KAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINI 133
A DI E V+ FG +DIL+NNA + L D ++ + +N
Sbjct: 65 LALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTL--DTPMKRFDLMQQVNA 122
Query: 134 TGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGV--ANASAYAASKWA 179
G F +A LP +++ HI+ ++ S+ + Y +K
Sbjct: 123 RGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMG 170
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 134 bits (338), Expect = 8e-39
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 7/165 (4%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCA----DIQNEPNEETVRMLNEIRQGSAKA 75
KI+LITGA SG GR A G +V + +N N E + +
Sbjct: 4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRT 63
Query: 76 YHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITG 135
+D+ ++ SV + + G++D+LI+NAG + F + T EQ L++IN+
Sbjct: 64 LELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHM-VFGPAE-AFTPEQFAELYDINVLS 121
Query: 136 HFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVA-NASAYAASKWA 179
R+ RA LP M ++ G ++ ISS SS G + Y A+K A
Sbjct: 122 TQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAA 166
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 132 bits (335), Expect = 1e-38
Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 34/185 (18%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN------------EETVRMLNE 67
+DK+VL+TG G GR A++ + G+ ++ DI ++ EE E
Sbjct: 9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGL---E 65
Query: 68 IRQ--GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQI 125
+ + A VD+ + A+V N +FGK+D+++ NAGI L + +
Sbjct: 66 VEKTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICP----LGAHLPVQAF 121
Query: 126 QRLFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVAN-----------ASAYA 174
F+++ G V A LP + I+ S++ + A + Y+
Sbjct: 122 ADAFDVDFVGVINTVHAALPYLTS--GASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYS 179
Query: 175 ASKWA 179
+K
Sbjct: 180 YAKQL 184
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 131 bits (331), Expect = 1e-38
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIG 81
K+ +ITGA G+G +A + G + + E+ L + + +H+D+
Sbjct: 3 KVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVS 62
Query: 82 NEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMVR 141
SV+E K V FG VD+++ NAG+ ++ + E+ + +N+ G +R ++
Sbjct: 63 KAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSE--EEFHEMIEVNLLGVWRTLK 120
Query: 142 AFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
AFL + + +V S +S+ + Y ++KWA
Sbjct: 121 AFLDSLKRTGGLALVTTSDVSARL-IPYGGGYVSTKWA 157
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 131 bits (331), Expect = 3e-38
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 15/166 (9%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQV-LCADIQNEPNEETVRM--LNEIRQGSA 73
+ K+V+ITGA SG+G +A F + G + L A R+ L + +
Sbjct: 12 RGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLAR----------RVERLKALNLPNT 61
Query: 74 KAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINI 133
VD+ ++ + + +G D ++NNAG++ +I + + QR+F++N+
Sbjct: 62 LCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANE--WQRMFDVNV 119
Query: 134 TGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
G ++A L M RN G I+ ISS++ + +AY +K+A
Sbjct: 120 LGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFA 165
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 130 bits (329), Expect = 3e-38
Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
+ + K L+TGA G+G+ +A G+ V+ +DI E + + A+A
Sbjct: 2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIG----KKARAI 57
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
DI + SVK L + G +DIL+NNA I F D+ + +++ ++N+TG
Sbjct: 58 AADISDPGSVKALFAEIQALTGGIDILVNNASI-VPFVAW-DDVDLDHWRKIIDVNLTGT 115
Query: 137 FRMVRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASK 177
F + RA M + G +++I+S + G N +AY A+K
Sbjct: 116 FIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAK 157
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 130 bits (330), Expect = 3e-38
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
+ K +L+TGA SG+GR F + G+ ++ D + E V L A A
Sbjct: 2 GRLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE----AEAIAV 57
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+ + +V+ + +FG++ + + AG+ + ++ E +++ +N+TG
Sbjct: 58 VADVSDPKAVEAVFAEALEEFGRLHGVAHFAGV-AHSALS-WNLPLEAWEKVLRVNLTGS 115
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANA--SAYAASK 177
F + R + + G +V S++ G+ + YAA K
Sbjct: 116 FLVARKAGEVLEE--GGSLVLTGSVA---GLGAFGLAHYAAGK 153
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 132 bits (334), Expect = 4e-38
Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 16/173 (9%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQV----LCADIQNEPN--------EETVRMLNE 67
+ K+ ITGA G GR A+ + G+ + LC N +ETVR++ E
Sbjct: 45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEE 104
Query: 68 IRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQR 127
A D+ + AS++ + +FG +DIL++N GI Q +++ +TD+Q
Sbjct: 105 Q-GRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVV--SLTDQQWSD 161
Query: 128 LFNINITGHFRMVRAFLPDMVKRNQ-GHIVAISSMSSMTGVANASAYAASKWA 179
+ N+ G + RA LP M++R Q G ++ +SS + G S YAASK
Sbjct: 162 ILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHG 214
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 131 bits (331), Expect = 4e-38
Identities = 44/171 (25%), Positives = 64/171 (37%), Gaps = 5/171 (2%)
Query: 9 SLISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEI 68
S + P + + +TG SG+G +A RG V + V L
Sbjct: 12 SGLVPRGSHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRA- 70
Query: 69 RQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRL 128
D+ + V FG + IL+N+AG D+ D +
Sbjct: 71 AGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGR-NGGGET-ADLDDALWADV 128
Query: 129 FNINITGHFRMVRAFLP--DMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ N+TG FR+ R L M + G IV I+S GV A+ Y ASK
Sbjct: 129 LDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASK 179
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 131 bits (331), Expect = 4e-38
Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 9/160 (5%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ--GSAKAYH 77
+ ++TGAGSG+GR +A + + G+ VL + +E EI GSA+A
Sbjct: 30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGR-TDGVKEVAD---EIADGGGSAEAVV 85
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
D+ + + + + +VD+L+NNAGI + +++ + + + +N+ +
Sbjct: 86 ADLADLEGAANVAEELAA-TRRVDVLVNNAGI--IARAPAEEVSLGRWREVLTVNLDAAW 142
Query: 138 RMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ R+F M+ G IV I+SM S G N +AYAASK
Sbjct: 143 VLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASK 182
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 130 bits (329), Expect = 5e-38
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 12/166 (7%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ--GSAKAYH 77
++ ++TGA G+GR +AL+ K G+ V + + E + G
Sbjct: 4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQ---EAQSLGGQCVPVV 60
Query: 78 VDIGNEASVKELGKNVHRD-FGKVDILINNAGILTQFKILQTD-----ITDEQIQRLFNI 131
D E+ V+ L + V R+ G++D+L+NNA Q + + + N+
Sbjct: 61 CDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNV 120
Query: 132 NITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ GH+ MV QG IV ISS S+ + N Y K
Sbjct: 121 GLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMFNV-PYGVGK 165
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 130 bits (329), Expect = 5e-38
Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 12/172 (6%)
Query: 11 ISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVL---CADIQNEPNEETVRMLNE 67
+S ++K+K+++I G LG A F ++ ++ + E
Sbjct: 1 MSLTKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKD---E 57
Query: 68 IRQ--GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQI 125
+ Y D+ NE V +L ++FGKVDI IN G K + + ++ +
Sbjct: 58 LEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGK-VLKKPI-VETSEAEF 115
Query: 126 QRLFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ IN + ++ M GHI+ I++ S YA +K
Sbjct: 116 DAMDTINNKVAYFFIKQAAKHMNP--NGHIITIATSLLAAYTGFYSTYAGNK 165
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 130 bits (329), Expect = 8e-38
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQV----LCADIQNEPN--------EETVRMLNE 67
+ K LITG G+GR A+ + G+ + C + ETV ++ +
Sbjct: 9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEK 68
Query: 68 IRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQR 127
+ VD+ + A+++ G +DI I NAGI T + ++ Q
Sbjct: 69 -TGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLP--EVESAQWDE 125
Query: 128 LFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ N+TG F + A P M+KRN G IV +SSM + ++Y +SKW
Sbjct: 126 VIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWG 177
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 131 bits (332), Expect = 9e-38
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 10/174 (5%)
Query: 14 PPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLN----EIR 69
P + V ITGA G+G+ +AL+ K G+ ++ A +P+ + + + EI
Sbjct: 38 PNTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIE 97
Query: 70 Q--GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQR 127
G A VD+ +E + + + FG +DIL+NNA ++ L T +++
Sbjct: 98 AVGGKALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDT--PTKRLDL 155
Query: 128 LFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGV--ANASAYAASKWA 179
+ N+N G + +A +P + K HI+ IS ++ V AY +K+
Sbjct: 156 MMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYG 209
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 130 bits (328), Expect = 1e-37
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 9/173 (5%)
Query: 14 PPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLN----EIR 69
P ++ K + I+G G+G +A G+ V EP+ + + EI
Sbjct: 2 PGSMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIE 61
Query: 70 Q--GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQR 127
+ G A DI + +V FG +DI +NNA + I + ++
Sbjct: 62 EAGGQALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEV--PLKRFDL 119
Query: 128 LFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMT-GVANASAYAASKWA 179
+ I + G + + ++ +P M R+ HI+ +S + + Y +K+
Sbjct: 120 MNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYG 172
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 129 bits (326), Expect = 2e-37
Identities = 35/167 (20%), Positives = 67/167 (40%), Gaps = 9/167 (5%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQN-EPNEETVRMLNEIRQ--GSA 73
+ + ++TG G+G +A G + I + E + E+
Sbjct: 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIA---ELSGLGARV 81
Query: 74 KAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINI 133
D+ + +S + V +FG++D L+NNAGI + + D+ E + +N+
Sbjct: 82 IFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNL 141
Query: 134 TGHFRMVRAFLPDMVKRNQ---GHIVAISSMSSMTGVANASAYAASK 177
G +A L M+ + I+ I+S+S++ Y SK
Sbjct: 142 RGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSK 188
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 128 bits (325), Expect = 3e-37
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 5/163 (3%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
++ L+TGA SG+G E+A K G +V E T++ L E A
Sbjct: 18 ATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE-AGVEADGR 76
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+ + ++ L V +G VD+L+NNAG ++ DE + N+TG
Sbjct: 77 TCDVRSVPEIEALVAAVVERYGPVDVLVNNAGR-PGGGATA-ELADELWLDVVETNLTGV 134
Query: 137 FRMVRAFLP--DMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
FR+ + L M++R G IV I+S GV +A+ Y+ASK
Sbjct: 135 FRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASK 177
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 128 bits (324), Expect = 4e-37
Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 28/179 (15%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN------------EETVRMLNE 67
K+ ITGA G GR A+ G+ ++ D+ ++ TV+
Sbjct: 12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVK---L 68
Query: 68 IRQ--GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQI 125
+ A D+ + S+ + + G++DI++ NAGI D+
Sbjct: 69 VEDIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAP------MSAGDDGW 122
Query: 126 QRLFNINITGHFRMVRAFLPDMVKRNQ-GHIVAISSMSSMTGV----ANASAYAASKWA 179
+ ++N+TG + ++ +P +VK+ G IV ISS + + GV + Y A+K
Sbjct: 123 HDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHG 181
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 128 bits (324), Expect = 4e-37
Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 19/183 (10%)
Query: 14 PPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQN-EPNEETVRMLNEIRQGS 72
P ++ ++TGA +GR +A++ + G +V+ + E LN+ R +
Sbjct: 16 PRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNT 75
Query: 73 AKAYHVDIGNE----ASVKELGKNVHRDFGKVDILINNAGI--------LTQFKILQTDI 120
A D+ N AS +E+ + R FG+ D+L+NNA
Sbjct: 76 AVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKT 135
Query: 121 TDEQIQRLFNINITGHFRMVRAFLPDM------VKRNQGHIVAISSMSSMTGVANASAYA 174
+ Q+ L N F + +F + IV + S Y
Sbjct: 136 VETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQPCMAFSLYN 195
Query: 175 ASK 177
K
Sbjct: 196 MGK 198
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 126 bits (320), Expect = 7e-37
Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 21 DKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDI 80
++ L+TG G+GR +A V RG +V A E +++ A D+
Sbjct: 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLG---------AVPLPTDL 52
Query: 81 GNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMV 140
+ K L K G + +L++ A + + +++ E+ +R+ +++ F +
Sbjct: 53 EKDD-PKGLVKRALEALGGLHVLVHAAAV--NVRKPALELSYEEWRRVLYLHLDVAFLLA 109
Query: 141 RAFLPDMVKRNQGHIVAISSMSSMTGVANA--SAYAASK 177
+A P M + G ++ I S+++ T AY +K
Sbjct: 110 QAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAK 148
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 126 bits (319), Expect = 2e-36
Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 4/162 (2%)
Query: 19 IKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQG-SAKAYH 77
I+ K+ ++T SGLG ALE + G+++L E E + + G
Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
DI + L + RD G DIL+ + G + ++ E + +
Sbjct: 65 GDIREPGDIDRLFEKA-RDLGGADILVYSTGG-PRPGRF-MELGVEDWDESYRLLARSAV 121
Query: 138 RMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ R MV++ G +V I S++ + + + +
Sbjct: 122 WVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLP 163
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 126 bits (318), Expect = 2e-36
Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 9/162 (5%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYH 77
++K K L+TG+ +G+G+ +A V G+ VL + E ET++ + + A
Sbjct: 7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRA-QYPDAILQP 65
Query: 78 V--DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITG 135
V D+G E +++ + + KVDILINN GI + DI DE +LF +NI
Sbjct: 66 VVADLGTEQGCQDVIE----KYPKVDILINNLGI-FEPVEY-FDIPDEDWFKLFEVNIMS 119
Query: 136 HFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
R+ R++L M++R +G ++ I+S +++ + Y+A+K
Sbjct: 120 GVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATK 161
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 125 bits (317), Expect = 2e-36
Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 11/176 (6%)
Query: 20 KDKIVLITGAGSGLGRELALEFVK---RGSQVLCADIQNEPNEETVRMLNEIRQGS-AKA 75
+ ++TGA G GR LA + + GS +L + + L +
Sbjct: 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVL 64
Query: 76 YHVDIGNEASVKEL----GKNVHRDFGKVDILINNAGILTQFKILQTDITD-EQIQRLFN 130
D+G EA V+ L + + + +LINNA L ++ D ++ +
Sbjct: 65 AAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWA 124
Query: 131 INITGHFRMVRAFLPDMVKRN--QGHIVAISSMSSMTGVANASAYAASKWARYTYT 184
+N+T + L +V ISS+ ++ Y A K AR
Sbjct: 125 LNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDMLY 180
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 126 bits (318), Expect = 3e-36
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 11/165 (6%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQN-EPNEETVRMLNEIRQ--GSAKAY 76
+VL+TG G+G + ++G +V N E + V I + G A A
Sbjct: 25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVA---AITESGGEAVAI 81
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+GN A + + V R FG++D L+NNAGI + +++ E+I+R+ +N+TG
Sbjct: 82 PGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGI-VDYPQRVDEMSVERIERMLRVNVTGS 140
Query: 137 FRMVRAFLPDMVKRNQ---GHIVAISSMSSMTGVANASA-YAASK 177
+ M + G IV +SSM+++ G A YAASK
Sbjct: 141 ILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASK 185
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 126 bits (318), Expect = 5e-36
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN--EETVRMLNEIRQ--GSAKA 75
KD+ L+TG SG+GR A+ + + G+ V + E ++ + I + A
Sbjct: 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKAL---IEECGRKAVL 104
Query: 76 YHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITG 135
D+ +E+ + L G +DIL AG T + D+T EQ Q+ F +N+
Sbjct: 105 LPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEI-KDLTSEQFQQTFAVNVFA 163
Query: 136 HFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWARYTYT 184
F + + +P + I+ SS+ + + YAA+K A Y+
Sbjct: 164 LFWITQEAIPLL--PKGASIITTSSIQAYQPSPHLLDYAATKAAILNYS 210
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 125 bits (317), Expect = 5e-36
Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
++K+ L+TGAG G+GRE+A K S V+C + + V + + Y
Sbjct: 40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-YESSGY 98
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+ + + E+ + + VDIL+NNAGI T+ + + +++ + + N+
Sbjct: 99 AGDVSKKEEISEVINKILTEHKNVDILVNNAGI-TRDNLFLR-MKNDEWEDVLRTNLNSL 156
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
F + + M+ G I+ ISS+ +TG + Y++SK
Sbjct: 157 FYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSK 197
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 124 bits (314), Expect = 7e-36
Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
+++ K+ L+TG+ G+GR +A + GS V+ E + + A
Sbjct: 3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGV 62
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
+++ +E S+ + + ++ +DIL+NNAGI T+ K+ ++ + + +N+TG
Sbjct: 63 EMNLLSEESINKAFEEIYNLVDGIDILVNNAGI-TRDKLFLR-MSLLDWEEVLKVNLTGT 120
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
F + + L M+K+ G IV ISS+ TG Y+ +K
Sbjct: 121 FLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTK 161
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 124 bits (314), Expect = 9e-36
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 12/170 (7%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYH 77
++K ++ ++TGA SGLG + + G+ VL D++ EE L + + +
Sbjct: 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELG----AAVRFRN 59
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTD--ITDEQIQRLFNINITG 135
D+ NEA ++FG V L+N AG KIL + R +N+ G
Sbjct: 60 ADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIG 119
Query: 136 HFRMVRAFLPDMVKRNQ------GHIVAISSMSSMTGVANASAYAASKWA 179
F M+R M + G IV +S+++ G +AYAASK
Sbjct: 120 TFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYAASKGG 169
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 124 bits (314), Expect = 1e-35
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+I L+TG G+G+ +A ++ G++V E +T L+ G +A D
Sbjct: 28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSA--YGDCQAIPAD 85
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ +EA + L + + ++DIL+NNAG + +++ +N+T F
Sbjct: 86 LSSEAGARRLAQALGELSARLDILVNNAGT--SWGAALESYPVSGWEKVMQLNVTSVFSC 143
Query: 140 VRAFLPDMVK----RNQGHIVAISSMSSMTGVA-NASAYAASK 177
++ LP + + N ++ I S++ ++ + A AY SK
Sbjct: 144 IQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSK 186
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 124 bits (313), Expect = 1e-35
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQN-EPNEETVRMLNEIRQ--GSAKAY 76
K+ L TGAG G+GR +A+E +RG+ V+ + + EE V E+++ A
Sbjct: 20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVA---ELKKLGAQGVAI 76
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
DI + V L FG +D +++N+G+ + ++T E ++FN+N G
Sbjct: 77 QADISKPSEVVALFDKAVSHFGGLDFVMSNSGM-EVWCDE-LEVTQELFDKVFNLNTRGQ 134
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSS-MTGVANASAYAASK 177
F + + L R G I+ SS+++ MTG+ N + YA SK
Sbjct: 135 FFVAQQGLKHC--RRGGRIILTSSIAAVMTGIPNHALYAGSK 174
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 124 bits (313), Expect = 2e-35
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 4/161 (2%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ LIT GLG+++ + + +G V + ET++ + + + D
Sbjct: 6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQAD 65
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGIL-TQFKILQTDITDEQIQRLFNINITGHFR 138
+ + + ++ + FGK+D LINNAG + K L D +++ + N+T F
Sbjct: 66 VTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKL-VDYEEDEWNEMIQGNLTAVFH 124
Query: 139 MVRAFLPDMVKRNQGHIVAISSMS--SMTGVANASAYAASK 177
+++ +P M K+N G I+ S G SA+AA+K
Sbjct: 125 LLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAK 165
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 123 bits (311), Expect = 2e-35
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
KDK VLITGA G+GR F K G++++ DI+ P E A +D
Sbjct: 4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE------AVGAHPVVMD 57
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ + ASV+ G++D +++ AGI T+ + E + + +N+TG F +
Sbjct: 58 VADPASVERGFAEALAHLGRLDGVVHYAGI-TRDNFHWK-MPLEDWELVLRVNLTGSFLV 115
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANA--SAYAASK 177
+A M ++N G IV +S + N + YAAS
Sbjct: 116 AKAASEAMREKNPGSIVLTASRV---YLGNLGQANYAASM 152
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 123 bits (312), Expect = 2e-35
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQ--GSAKAY 76
+K+ ++TGA G+G +A G V+ EE +I G A
Sbjct: 26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAG---KIEAAGGKALTA 82
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+ + A+V+ L FG VD+L+NNAGI + + D R+ +N+ G
Sbjct: 83 QADVSDPAAVRRLFATAEEAFGGVDVLVNNAGI-MPLTTI-AETGDAVFDRVIAVNLKGT 140
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
F +R + R G I+ +S+ + YAA+K
Sbjct: 141 FNTLREAAQRL--RVGGRIINMSTSQVGLLHPSYGIYAAAK 179
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 123 bits (310), Expect = 2e-35
Identities = 19/160 (11%), Positives = 46/160 (28%), Gaps = 12/160 (7%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
V++ G LG + F K G VL D+ ++ ++ + +
Sbjct: 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILV---------DGNKN 52
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ +VD + AG + + + ++
Sbjct: 53 WTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSAS-SKDFVKNADLMIKQSVWSSAIA 111
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ + + G + + ++M + Y +K A
Sbjct: 112 AKLATTHL--KPGGLLQLTGAAAAMGPTPSMIGYGMAKAA 149
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 123 bits (312), Expect = 2e-35
Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 19/185 (10%)
Query: 12 SPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQN-EPNEETVRMLNEIRQ 70
+ + + +ITG +G +A+ ++G +V+ + + V LN R
Sbjct: 2 NETSHEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA 61
Query: 71 GSAKAYHVDIGNEASV----KELGKNVHRDFGKVDILINNAGI---------LTQFKILQ 117
GSA D+ +S+ +++ R FG+ D+L+NNA
Sbjct: 62 GSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAAD 121
Query: 118 TDITDEQIQRLFNINITGHFRMVRAFLPDM-----VKRNQGHIVAISSMSSMTGVANASA 172
D Q+ LF N ++RAF + +V + + +
Sbjct: 122 AKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCV 181
Query: 173 YAASK 177
Y +K
Sbjct: 182 YTMAK 186
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 122 bits (308), Expect = 4e-35
Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 11/161 (6%)
Query: 19 IKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHV 78
+K KI ++TGA G+G E+ + + N E + L E +
Sbjct: 3 LKKKIAVVTGATGGMGIEIVKDLSRDHIVYALGR-----NPEHLAALAE--IEGVEPIES 55
Query: 79 DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFR 138
DI E + + ++ VD L++ A + I + ++N+
Sbjct: 56 DIVKEVLEEGGVDKL-KNLDHVDTLVHAAAVARDTTIEAGS--VAEWHAHLDLNVIVPAE 112
Query: 139 MVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ R LP + + G ++ I+S + + YAASK A
Sbjct: 113 LSRQLLPALRAAS-GCVIYINSGAGNGPHPGNTIYAASKHA 152
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 123 bits (310), Expect = 4e-35
Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 13/178 (7%)
Query: 11 ISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ 70
S K+ + +++G GLG G V+ AD+ E + L
Sbjct: 20 GSMVTIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELG---- 75
Query: 71 GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITD---EQIQR 127
A+ ++ +E SV + ++ ++ + G +I+Q D + +
Sbjct: 76 NRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTK 135
Query: 128 LFNINITGHFRMVRAFLPDMVKR------NQGHIVAISSMSSMTGVANASAYAASKWA 179
++ + G + + R + +G +V +S++ G +AYAA+K
Sbjct: 136 TIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAYAAAKAG 193
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 122 bits (308), Expect = 5e-35
Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQGSAKAY 76
++K K ++TG+ GLG+ +A + G+ ++ + + T +
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKA-AGINVVVA 60
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+ N V+ + K FG++DIL+NNAGI T+ ++ ++++ + N N+
Sbjct: 61 KGDVKNPEDVENMVKTAMDAFGRIDILVNNAGI-TRDTLMLK-MSEKDWDDVLNTNLKSA 118
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ +A M+K+ G I+ I+S++ + G A + YAASK
Sbjct: 119 YLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASK 159
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 122 bits (309), Expect = 5e-35
Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 10/169 (5%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNE------IRQ 70
++ + L+TGAGSG+GR +++ G+ V D+ +ETVR+L +
Sbjct: 3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPR 62
Query: 71 GSAKAYHVDIGNEASVKELGKNVHRDFGK-VDILINNAGILTQFKILQTDITDEQIQRLF 129
G+ A+ D+ + + L + V F + ++++ AGI TQ + L ++++ ++
Sbjct: 63 GNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGI-TQDEFLLH-MSEDDWDKVI 120
Query: 130 NINITGHFRMVRAFLPDMVK-RNQGHIVAISSMSSMTGVANASAYAASK 177
+N+ G F + +A +V +G I+ ISS+ G + YAASK
Sbjct: 121 AVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASK 169
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 123 bits (310), Expect = 5e-35
Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
K + ++ ++TGA G+GR +ALE +RG+ V+ E + +
Sbjct: 24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA-GLEGRGA 82
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
+++ + +V L ++ ++FG +++L+NNAGI TQ ++ + D++ + + N+
Sbjct: 83 VLNVNDATAVDALVESTLKEFGALNVLVNNAGI-TQDQLAMR-MKDDEWDAVIDTNLKAV 140
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
FR+ RA L M+K G IV I+S+ G YAA+K
Sbjct: 141 FRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAK 181
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 122 bits (308), Expect = 5e-35
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 12/167 (7%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQV-LCADIQNEPNEETVRML-NEIRQ--GS 72
++ K+ LITGA SG+G A G+ V + A E +R L +E+
Sbjct: 3 SALQGKVALITGASSGIGEATARALAAEGAAVAIAAR-----RVEKLRALGDELTAAGAK 57
Query: 73 AKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNIN 132
+D+ + V + G +DIL+NNAGI+ + D R+ + N
Sbjct: 58 VHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADT--TDWTRMIDTN 115
Query: 133 ITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ G M RA LP ++ R++G +V +SS++ V NA+ Y A+K+
Sbjct: 116 LLGLMYMTRAALPHLL-RSKGTVVQMSSIAGRVNVRNAAVYQATKFG 161
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 123 bits (310), Expect = 5e-35
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 21/188 (11%)
Query: 4 PEFIYSLISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQV-LCA-------DIQN 55
+ ++ P + +D++ L+TGA G+G +A V++G +V CA ++
Sbjct: 15 NLYFQGHMARPGMERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAA 74
Query: 56 EPNEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKI 115
E G+ Y D+ NE + + + VDI INNAG+ +
Sbjct: 75 ECKSAG-------YPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTL 127
Query: 116 LQTDITDEQIQRLFNINITGHFRMVRAFLPDMVKRNQ--GHIVAISSMSSMTGVANASA- 172
L + + +FN+N+ R M +RN GHI+ I+SMS + +
Sbjct: 128 LSGSTSG--WKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTH 185
Query: 173 -YAASKWA 179
Y+A+K+A
Sbjct: 186 FYSATKYA 193
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 122 bits (308), Expect = 6e-35
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYH 77
+K + +ITG SGLG A V +G+ + D+ N E + L +
Sbjct: 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLG----NNCVFAP 64
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTD----ITDEQIQRLFNINI 133
D+ +E V+ FG+VD+ +N AGI K T E QR+ ++N+
Sbjct: 65 ADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNL 124
Query: 134 TGHFRMVRAFLPDMVKR------NQGHIVAISSMSSMTGVANASAYAASKWA 179
G F ++R +M + +G I+ +S+++ G +AY+ASK
Sbjct: 125 MGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGG 176
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 123 bits (310), Expect = 6e-35
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 5/166 (3%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQGSAKAYHV 78
K K VLITG SG+GR +++ F K G+ + A + E + ET + + E
Sbjct: 46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYV-EKEGVKCVLLPG 104
Query: 79 DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFR 138
D+ +E K++ + R G ++IL+NN + L IT EQ+++ F INI +F
Sbjct: 105 DLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGL-EYITAEQLEKTFRINIFSYFH 163
Query: 139 MVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWARYTYT 184
+ +A L + + I+ +S+ + G Y+A+K A +T
Sbjct: 164 VTKAALSHL--KQGDVIINTASIVAYEGNETLIDYSATKGAIVAFT 207
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 121 bits (306), Expect = 7e-35
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 18/162 (11%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQ-VLCADIQNEPNEETVRMLNEIRQGSAKAYHV-- 78
+++ITGA SGLG ELA + G L +E L+ + +
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGR-----SESK---LSTVTNCLSNNVGYRA 53
Query: 79 -DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
D+ + V++L + ++++AG + + D EQIQ L N++
Sbjct: 54 RDLASHQEVEQL---FEQLDSIPSTVVHSAGSGYFGLLQEQDP--EQIQTLIENNLSSAI 108
Query: 138 RMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
++R + + ++V I S ++ A S Y A KWA
Sbjct: 109 NVLRELVKRYKDQP-VNVVMIMSTAAQQPKAQESTYCAVKWA 149
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 122 bits (308), Expect = 1e-34
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 21/175 (12%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQ----VLCA-------DIQNEPNEETVRML 65
+ + K VLITGA +G+G+ ALE+++ + +L A +++ ++E
Sbjct: 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEF---- 84
Query: 66 NEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGI-LTQFKILQTDITDEQ 124
+DI +K +N+ ++F +DIL+NNAG L ++ Q D
Sbjct: 85 ---PNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATED-- 139
Query: 125 IQRLFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
IQ +F+ N+T + +A LP +N G IV + S++ S Y ASK+A
Sbjct: 140 IQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFA 194
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 122 bits (308), Expect = 1e-34
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 11/162 (6%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQN-EPNEETVRMLNEIRQ--GSAKAY 76
+ K+ L+TGAG G+GRE+A+E +RG +V+ + E EE V I++ A
Sbjct: 28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVA---AIKKNGSDAACV 84
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
++G + + + + FGK+DI+ +N+G+ F + D+T E+ R+F IN G
Sbjct: 85 KANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGV-VSFGHV-KDVTPEEFDRVFTINTRGQ 142
Query: 137 FRMVRAFLPDMVKRNQGHIVAISS-MSSMTGVANASAYAASK 177
F + R + G ++ + S V + Y+ SK
Sbjct: 143 FFVAREAYKHL--EIGGRLILMGSITGQAKAVPKHAVYSGSK 182
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 119 bits (302), Expect = 1e-34
Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 18/156 (11%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIGNE 83
VLITGA GLG A +G +L + + E R E+ A+A D+ +E
Sbjct: 3 VLITGATGGLGGAFARAL--KGHDLLLSGRRAGALAELAR---EVG---ARALPADLADE 54
Query: 84 ASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMVRAF 143
K L + G +D+L++ G + + + + ++ + ++
Sbjct: 55 LEAKALL----EEAGPLDLLVHAVGKAGRASVREAG--RDLVEEMLAAHLLT----AAFV 104
Query: 144 LPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
L + V + V +AYAA+K A
Sbjct: 105 LKHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGA 140
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 120 bits (303), Expect = 2e-34
Identities = 24/160 (15%), Positives = 46/160 (28%), Gaps = 12/160 (7%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ + VL+ G LG F R V D+ ++ + D
Sbjct: 6 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASV---IVKMTDSFTEQAD 62
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
K LG KVD ++ AG + + ++ +I
Sbjct: 63 QVTAEVGKLLG------DQKVDAILCVAGGWAGGNAK-SKSLFKNCDLMWKQSIWTSTIS 115
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ + G + + +++ G Y +K A
Sbjct: 116 SHLATKHLKEG--GLLTLAGAKAALDGTPGMIGYGMAKGA 153
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 120 bits (304), Expect = 2e-34
Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+K+ L+TGA G+G E+A +G+ V+ E+ + E + A+ ++
Sbjct: 4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKE-KGFKARGLVLN 62
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
I + S++ + + +DIL+NNAGI T+ ++ +++++ Q + N N++ FRM
Sbjct: 63 ISDIESIQNFFAEIKAENLAIDILVNNAGI-TRDNLMMR-MSEDEWQSVINTNLSSIFRM 120
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ + M+K+ G I++I S+ G + Y A+K
Sbjct: 121 SKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAK 158
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 122 bits (308), Expect = 3e-34
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 9/163 (5%)
Query: 22 KIVLITGAGSGLGRELALEFVK---RGSQVLCA--DIQNEPNEETVRMLNEIRQGSAKAY 76
+VLITG SG+G LA+ + +V D++ + GS +
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETL 62
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
+D+ + SV + V G+VD+L+ NAG+ L+ + ++ + + ++N+ G
Sbjct: 63 QLDVRDSKSVAAARERVT--EGRVDVLVCNAGL-GLLGPLE-ALGEDAVASVLDVNVVGT 118
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
RM++AFLPDM +R G ++ S+ + G+ Y ASK+A
Sbjct: 119 VRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFA 161
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 120 bits (303), Expect = 3e-34
Identities = 52/159 (32%), Positives = 85/159 (53%), Gaps = 4/159 (2%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQGSAKAYHV 78
K K+ L+TGA G+GR +A++ K+G+ V+ NE E V + ++ A A
Sbjct: 3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL-GSDAIAVRA 61
Query: 79 DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFR 138
D+ N V + K FG+VDIL+NNAG+ T+ +L + +E+ + N N+ G F
Sbjct: 62 DVANAEDVTNMVKQTVDVFGQVDILVNNAGV-TKDNLLMR-MKEEEWDTVINTNLKGVFL 119
Query: 139 MVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+A M+++ G IV I+S+ +TG + Y A+K
Sbjct: 120 CTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAK 158
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 119 bits (302), Expect = 5e-34
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 9/159 (5%)
Query: 23 IVLITGAGSGLGRELALEFVKRGSQV-LCADIQNEPNEETVRMLNEIRQGSAKAYHVDIG 81
IVL+TGA +G G + F+++G +V +E ++ L + + +D+
Sbjct: 2 IVLVTGATAGFGECITRRFIQQGHKVIATGR-----RQERLQELKDELGDNLYIAQLDVR 56
Query: 82 NEASVKELGKNVHRDFGKVDILINNAGI-LTQFKILQTDITDEQIQRLFNINITGHFRMV 140
N A+++E+ ++ ++ +DIL+NNAG+ L + + D + + + N G M
Sbjct: 57 NRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVED--WETMIDTNNKGLVYMT 114
Query: 141 RAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
RA LP MV+RN GHI+ I S + A + Y A+K
Sbjct: 115 RAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAF 153
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 120 bits (303), Expect = 5e-34
Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 12/173 (6%)
Query: 12 SPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQV-LCADIQNEPNEETVRML-NEIR 69
PR + ITGA SG G A F + G + L EE ++ L E+
Sbjct: 12 GLVPRGSHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGR-----REERLQALAGELS 66
Query: 70 -QGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGI-LTQFKILQTDITDEQIQR 127
+ +D+ + A++ N+ +F + LINNAG+ L D+ D
Sbjct: 67 AKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDD--WDT 124
Query: 128 LFNINITGHFRMVRAFLPDMVKRNQG-HIVAISSMSSMTGVANASAYAASKWA 179
+ + NI G R LP ++ G IV + S++ + Y +K
Sbjct: 125 MVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAF 177
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 119 bits (301), Expect = 6e-34
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 6/158 (3%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ K+ L+TGA G+G+ +A +RG++V+ + L + K ++
Sbjct: 8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG----DNGKGMALN 63
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ N S++ + K + +FG VDIL+NNAGI T+ +L + +E+ + N+T FR+
Sbjct: 64 VTNPESIEAVLKAITDEFGGVDILVNNAGI-TRDNLLMR-MKEEEWSDIMETNLTSIFRL 121
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+A L M+K+ QG I+ + S+ G A + YAA+K
Sbjct: 122 SKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAK 159
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 119 bits (302), Expect = 6e-34
Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQN-EPNEETVRMLNEIRQ--GSA 73
+ K +TG G+G +A G+ V + E + V EI Q G A
Sbjct: 27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVS---EIEQAGGRA 83
Query: 74 KAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINI 133
A D + ++++ + G +DIL+N+AGI L + T + +N
Sbjct: 84 VAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGI-WHSAPL-EETTVADFDEVMAVNF 141
Query: 134 TGHFRMVRAFLPDMVKRNQGHIVAISS-MSSMTGVANASAYAASK 177
F +R+ + + G I+ I S ++ + S Y+ASK
Sbjct: 142 RAPFVAIRSASRHL--GDGGRIITIGSNLAELVPWPGISLYSASK 184
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 119 bits (300), Expect = 8e-34
Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 4/157 (2%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQGSAKAYHVDI 80
+V++TGA G+G+ +AL K G +VL ++ EE + + G A + D+
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA-YGGQAITFGGDV 60
Query: 81 GNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMV 140
EA V+ + K +G +D+++NNAGI T+ +L + Q + ++N+TG F
Sbjct: 61 SKEADVEAMMKTAIDAWGTIDVVVNNAGI-TRDTLLIR-MKKSQWDEVIDLNLTGVFLCT 118
Query: 141 RAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+A M+K+ +G I+ I+S+ + G + YAA+K
Sbjct: 119 QAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAK 155
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 119 bits (301), Expect = 1e-33
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQGSAKAY 76
+ D+I L+TGA G+GR +ALE G++V + +E V + G A A
Sbjct: 25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAA-AGGEAFAV 83
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+ E+ V+ L V +G++D+L+NNAGI T+ +L + + Q + ++N+ G
Sbjct: 84 KADVSQESEVEALFAAVIERWGRLDVLVNNAGI-TRDTLLLR-MKRDDWQSVLDLNLGGV 141
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
F RA M+K+ G I+ I+S+ G + Y+A+K
Sbjct: 142 FLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAK 182
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 118 bits (299), Expect = 2e-33
Identities = 39/161 (24%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
++ + L+TGA G+G +A F +G+ V + + +E L +
Sbjct: 23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG----KDVFVF 78
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
++ + S+K+L + R+ +DIL+NNAGI T+ + + D+ + +N+T
Sbjct: 79 SANLSDRKSIKQLAEVAEREMEGIDILVNNAGI-TRDGLFVR-MQDQDWDDVLAVNLTAA 136
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ R + M++R G I+ I+S+ + G + Y A+K
Sbjct: 137 STLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAK 177
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 117 bits (297), Expect = 2e-33
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQGSAKAYHV 78
K L+TGA G+GR +AL+ + G V ++ E V + + A
Sbjct: 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK-GVDSFAIQA 61
Query: 79 DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFR 138
++ + VK + K V FG +D+L+NNAGI T+ +L + +++ + + N+ G F
Sbjct: 62 NVADADEVKAMIKEVVSQFGSLDVLVNNAGI-TRDNLLMR-MKEQEWDDVIDTNLKGVFN 119
Query: 139 MVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
++ P M+++ G I+ +SS+ G + Y A+K
Sbjct: 120 CIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATK 158
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 118 bits (298), Expect = 3e-33
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
++ +TG GLG ++ G V + + + T M KAY VD
Sbjct: 24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVD 83
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ + S + + V DFGKVD+LINNAGI T+ +T + ++ F +
Sbjct: 84 VADFESCERCAEKVLADFGKVDVLINNAGI-TRDATFMK-MTKGDWDAVMRTDLDAMFNV 141
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ F+ MV+R G IV I S++ G + YA++K
Sbjct: 142 TKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAK 179
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 117 bits (296), Expect = 5e-33
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 11/162 (6%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQN-EPNEETVRMLNEIRQ--GSAKAY 76
K+ L+TG+G G+G +A+ + G++V+ + + E+ V EI+ A A
Sbjct: 17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVS---EIKALGSDAIAI 73
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
DI + +L FG +DI ++N+G+ F L D+T+E+ R+F++N G
Sbjct: 74 KADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGV-VSFGHL-KDVTEEEFDRVFSLNTRGQ 131
Query: 137 FRMVRAFLPDMVKRNQGHIVAISS-MSSMTGVANASAYAASK 177
F + R + G IV SS S V S Y+ SK
Sbjct: 132 FFVAREAYRHL--TEGGRIVLTSSNTSKDFSVPKHSLYSGSK 171
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 116 bits (294), Expect = 6e-33
Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 2/158 (1%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+I +TG G+G + K G +V+ N P + A +
Sbjct: 12 SQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGN 71
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+G+ S K+ V + G++D+L+NNAGI T+ + + +T E Q + + N+T F +
Sbjct: 72 VGDWDSTKQAFDKVKAEVGEIDVLVNNAGI-TRDVVFRK-MTREDWQAVIDTNLTSLFNV 129
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ + MV+R G I+ ISS++ G + Y+ +K
Sbjct: 130 TKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAK 167
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 115 bits (290), Expect = 2e-32
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 3/157 (1%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQV-LCADIQNEPNEETVRMLNEIRQGSAKAYHVDI 80
+ LITGA G+GR +AL + G + + E EE ++
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANL 61
Query: 81 GNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMV 140
+ L G +D L+NNAGI T+ +L + DE + + N++ FR
Sbjct: 62 LEAEAATALVHQAAEVLGGLDTLVNNAGI-TRDTLLVR-MKDEDWEAVLEANLSAVFRTT 119
Query: 141 RAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
R + M+K G IV I+S+ + G + Y ASK
Sbjct: 120 REAVKLMMKARFGRIVNITSVVGILGNPGQANYVASK 156
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 114 bits (287), Expect = 7e-32
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQN-----EPNEETVRMLNEIRQ--GS 72
K K+ L+TGA G+GR +A G+ V + E EETV EI+ GS
Sbjct: 6 KGKVALVTGASRGIGRAIAKRLANDGALV----AIHYGNRKEEAEETVY---EIQSNGGS 58
Query: 73 AKAYHVDIGNEASVKELGKNVHRDF------GKVDILINNAGILTQFKILQTDITDEQIQ 126
A + ++ + V+ L ++ + K DILINNAGI + + T++
Sbjct: 59 AFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGI-GPGAFI-EETTEQFFD 116
Query: 127 RLFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
R+ ++N F +++ L + R+ I+ ISS ++ + + AY+ +K
Sbjct: 117 RMVSVNAKAPFFIIQQALSRL--RDNSRIINISSAATRISLPDFIAYSMTK 165
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 113 bits (285), Expect = 1e-31
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 18/172 (10%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYH 77
EI+D + ++TG SGLG + G+QV+ DI+ E+ V L A+
Sbjct: 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR---GEDVVADLG----DRARFAA 58
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTD--ITDEQIQRLFNINITG 135
D+ +EA+V G + I++N AG ++L D + +++ +IN+ G
Sbjct: 59 ADVTDEAAVASALDLA-ETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVG 117
Query: 136 HFRMVRAFLPDMVKRN--------QGHIVAISSMSSMTGVANASAYAASKWA 179
F ++R + K +G I+ +S+++ G +AY+ASK
Sbjct: 118 SFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSASKGG 169
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 113 bits (284), Expect = 2e-31
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 14/166 (8%)
Query: 12 SPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQG 71
+ + + VL+TG G+G +A G +V + +
Sbjct: 6 TEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG----------- 54
Query: 72 SAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNI 131
VD+ + +V V G V++L++NAG+ + L +T+E+ +++ N
Sbjct: 55 -LFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL-SADAFLMR-MTEEKFEKVINA 111
Query: 132 NITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
N+TG FR+ + M + G ++ I S+S + G+ N + YAASK
Sbjct: 112 NLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASK 157
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 115 bits (290), Expect = 6e-31
Identities = 43/166 (25%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 15 PRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAK 74
K + K+ ++TGA G+G +A F + G+ V+ D+ + E+ R+ +++
Sbjct: 207 WDKPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDV-DGAAEDLKRVADKVG---GT 262
Query: 75 AYHVDIGNEASVKELGKNVHRDFG-KVDILINNAGILTQFKILQTDITDEQIQRLFNINI 133
A +D+ + +V ++ +V G KVDIL+NNAGI T+ K+L + +++ + +N+
Sbjct: 263 ALTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGI-TRDKLLAN-MDEKRWDAVIAVNL 320
Query: 134 TGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANA--SAYAASK 177
R+ + + G ++ +SSM+ + G N + YA +K
Sbjct: 321 LAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAG--NRGQTNYATTK 364
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 111 bits (281), Expect = 7e-31
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 14/161 (8%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
+ + VL+TG G+G +A F G +V EP E A
Sbjct: 17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEG------------FLAV 64
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
DI + V++ K + G V++LI NAG+ T+ ++L +++E + N+TG
Sbjct: 65 KCDITDTEQVEQAYKEIEETHGPVEVLIANAGV-TKDQLLMR-MSEEDFTSVVETNLTGT 122
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
FR+V+ M++ +G +V ISS+ + G A + YAASK
Sbjct: 123 FRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASK 163
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 113 bits (284), Expect = 7e-31
Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 19/169 (11%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADI---------QNEPNEETVRMLNEIRQ 70
++VL+TGAG GLGR AL F +RG+ V+ D+ + ++ V EIR+
Sbjct: 8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVV---EEIRR 64
Query: 71 --GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRL 128
G A A + + + ++L K FG++D+++NNAGIL I+DE +
Sbjct: 65 RGGKAVA---NYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFS--RISDEDWDII 119
Query: 129 FNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+++ G F++ RA M K+N G I+ +S S + G + Y+A+K
Sbjct: 120 QRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSAAK 168
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 110 bits (278), Expect = 1e-30
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 22/165 (13%)
Query: 21 DKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDI 80
++ L+TG SGLGR AL RG +V+ D++ E D+
Sbjct: 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-------------GEDLIYVEGDV 48
Query: 81 GNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTD--ITDEQIQRLFNINITGHFR 138
E V+ ++ + +++ AG+ KIL + E +R+ +N+ G F
Sbjct: 49 TREEDVRRAVARA-QEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFN 107
Query: 139 MVRAFLPDMVKRN------QGHIVAISSMSSMTGVANASAYAASK 177
++R M + +G IV +S+++ G +AYAASK
Sbjct: 108 VLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASK 152
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 110 bits (278), Expect = 2e-30
Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 2/159 (1%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQG-SAKAYHVDI 80
++ ITG+ SG+G L + G V+ D E + +A
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGG 61
Query: 81 GNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMV 140
+ V G V + + +N G+ L ++ Q + +
Sbjct: 62 VLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPG 121
Query: 141 RAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
A LP + G ++ G + AYA SK+A
Sbjct: 122 AAELPMVEAMLAGDEARAIELAEQQGQTHL-AYAGSKYA 159
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 109 bits (276), Expect = 3e-30
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAY 76
++ K LITGA SG+G +A K GS+V+ + E + L +
Sbjct: 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK----DNYTIE 65
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
++ N+ L +DIL+ NAGI T + + D+ ++ +IN+ +
Sbjct: 66 VCNLANKEECSNLIS----KTSNLDILVCNAGI-TSDTLAIR-MKDQDFDKVIDINLKAN 119
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
F + R + M+++ G I+ ISS+ + G + Y ASK
Sbjct: 120 FILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASK 160
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 108 bits (271), Expect = 5e-30
Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 27/158 (17%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIG 81
+L+ GA LG + K+ + + VDI
Sbjct: 4 MKILLIGASGTLGSAVKERLEKKAEVITAG-------------------RHSGDVTVDIT 44
Query: 82 NEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMVR 141
N S+K++ + GKVD +++ G F L T++T E+ + + G +V
Sbjct: 45 NIDSIKKMYE----QVGKVDAIVSATGS-ATFSPL-TELTPEKNAVTISSKLGGQINLVL 98
Query: 142 AFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+ + ++G + + + ++ A + A
Sbjct: 99 LGIDSL--NDKGSFTLTTGIMMEDPIVQGASAAMANGA 134
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 109 bits (275), Expect = 9e-30
Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 36/197 (18%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQGSAKA 75
+ L+TGA LGR +A G V ++ LN R SA
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 64
Query: 76 YHVDIGNEAS-----------------VKELGKNVHRDFGKVDILINNAGILT------- 111
D+ N A+ EL + +G+ D+L+NNA
Sbjct: 65 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 124
Query: 112 -----QFKILQTDITDEQIQRLFNINITGHFRMVRAFLPDMV------KRNQGHIVAISS 160
+ + + + LF N + +++AF + + I+ +
Sbjct: 125 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 184
Query: 161 MSSMTGVANASAYAASK 177
+ + + Y +K
Sbjct: 185 AMTNQPLLGYTIYTMAK 201
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 113 bits (284), Expect = 9e-30
Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 15/167 (8%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADI---------QNEPNEETVRMLNEIRQ 70
KDK+V+ITGAG GLG+ +LEF K G++V+ D+ ++ + V +EI +
Sbjct: 7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVV---DEIVK 63
Query: 71 GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFN 130
A D N ++ + ++FG V ++INNAGIL + +T++ + + +
Sbjct: 64 NGGVA-VADYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMK--KMTEKDYKLVID 120
Query: 131 INITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+++ G F + +A P K+ G IV SS + + G + YA++K
Sbjct: 121 VHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYASAK 167
Score = 107 bits (268), Expect = 2e-27
Identities = 52/181 (28%), Positives = 94/181 (51%), Gaps = 15/181 (8%)
Query: 1 MTIPEFIYSLISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEE 60
+ + S P +KDK+VLITGAG+GLG+E A F K G++V+ D + +
Sbjct: 302 NEARKLPANDASGAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDF--KDATK 359
Query: 61 TVRMLNEIRQGSAKAYHVDIGNEASVKELGKNVHRD----FGKVDILINNAGILTQFKIL 116
TV +EI+ +A ++ V + + + ++ +G +DIL+NNAGIL +
Sbjct: 360 TV---DEIKAAGGEA----WPDQHDVAKDSEAIIKNVIDKYGTIDILVNNAGILRD-RSF 411
Query: 117 QTDITDEQIQRLFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAAS 176
++ ++ + +++ G F + R P V++ G I+ I+S S + G + Y++S
Sbjct: 412 -AKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSS 470
Query: 177 K 177
K
Sbjct: 471 K 471
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 108 bits (272), Expect = 1e-29
Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 27/178 (15%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGS--QVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
V++TGA G+G L + VK + ++ E E L I+ +
Sbjct: 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE----LKSIKDSRVHVLPLT 59
Query: 80 IGNEASVKELGKNVHRDFG--KVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
+ + S+ V G + +LINNAG+L + T+ I ++N T
Sbjct: 60 VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTN-TEPNRAVIAEQLDVNTTSVV 118
Query: 138 RMVRAFLPDMVK-----------RNQGHIVAISS-MSSMT------GVANASAYAASK 177
+ + LP + ++ ++ ISS + S+T AY SK
Sbjct: 119 LLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSK 176
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 112 bits (283), Expect = 1e-29
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 21/170 (12%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADI---------QNEPNEETVRMLNEIRQ 70
++ ++TGAG+GLGRE AL F +RG++V+ D+ + V +EIR+
Sbjct: 18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVV---DEIRK 74
Query: 71 GSAKAYHVDIGNEASVKELGKNVHR---DFGKVDILINNAGILTQFKILQTDITDEQIQR 127
+A + + SV + K + FG+VDIL+NNAGIL + +++
Sbjct: 75 AGGEA----VADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSL--VKTSEQDWNL 128
Query: 128 LFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ ++++ G F+ +A P M K+N G I+ SS S + G Y A+K
Sbjct: 129 VNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNYTAAK 178
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 109 bits (274), Expect = 2e-29
Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 36/197 (18%)
Query: 17 KEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN-EETVRMLNEIRQGSAKA 75
+ L+TGA LGR +A G V ++ LN R SA
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAIT 101
Query: 76 YHVDIGNEAS-----------------VKELGKNVHRDFGKVDILINNAGILT------- 111
D+ N A+ EL + +G+ D+L+NNA
Sbjct: 102 VQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRN 161
Query: 112 -----QFKILQTDITDEQIQRLFNINITGHFRMVRAFLPDMV------KRNQGHIVAISS 160
+ + + + LF N + +++AF + + I+ +
Sbjct: 162 DEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD 221
Query: 161 MSSMTGVANASAYAASK 177
+ + + Y +K
Sbjct: 222 AMTNQPLLGYTIYTMAK 238
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 106 bits (267), Expect = 6e-29
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 18/161 (11%)
Query: 19 IKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHV 78
I+DK VL+ A G+GR +A + G++V NEE + + S Y V
Sbjct: 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICAR----NEELL-------KRSGHRYVV 65
Query: 79 DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFR 138
+++ + +VDIL+ NAG + ++T+E + + +
Sbjct: 66 -----CDLRKDLDLLFEKVKEVDILVLNAGG-PKAGFF-DELTNEDFKEAIDSLFLNMIK 118
Query: 139 MVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWA 179
+VR +LP M ++ G IVAI+S S ++ + N +++ A
Sbjct: 119 IVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMA 159
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 107 bits (268), Expect = 2e-28
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 27/186 (14%)
Query: 12 SPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADI----------QNEPNEET 61
P + ++V++TGAG G+GR AL F G++V+ DI +
Sbjct: 18 GPGSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSV 77
Query: 62 VRMLNEIRQ--GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGIL--TQFKILQ 117
V +EI G A A ++ + L + FG +D+L+NNAGI+
Sbjct: 78 V---DEITAAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIA--- 131
Query: 118 TDITDEQIQRLFNINITGHFRMVRAFLPDM------VKRNQGHIVAISSMSSMTGVANAS 171
+ ++E+ + +++ GHF +R K G I+ SS + + G
Sbjct: 132 -NTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGSVGQG 190
Query: 172 AYAASK 177
Y+A+K
Sbjct: 191 NYSAAK 196
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 105 bits (263), Expect = 3e-28
Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 26/177 (14%)
Query: 22 KIVLITGAGSGLGRELALEFVK---RGSQVLCADIQNEPNEETVRMLNEIRQ--GSAKAY 76
+LITG GLG L + + E +E L ++ + +
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE----LEDLAKNHSNIHIL 77
Query: 77 HVDIGNEASVKELGKNVHRDFG--KVDILINNAGILTQFKILQTDITDEQIQRLFNINIT 134
+D+ N + +L ++ +++L NNAGI + + T + +++ N
Sbjct: 78 EIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARI-TAVRSQELLDTLQTNTV 136
Query: 135 GHFRMVRAFLPDMVK-----------RNQGHIVAISS-MSSMTGVA--NASAYAASK 177
+ +A LP + K + I+ +SS + S+ G AY SK
Sbjct: 137 VPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSK 193
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 105 bits (264), Expect = 3e-28
Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 22 KIVLITGAGSGLGRELALEFVKR-GSQVLCA--DIQNEPNEETVRMLNEIRQGSAKAYHV 78
+ L+TG G+G + + + V+ D+ + V+ L S + + +
Sbjct: 5 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR--GQAAVQQLQA-EGLSPRFHQL 61
Query: 79 DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFR 138
DI + S++ L + +++G +D+L+NNAGI FK+ Q + N G
Sbjct: 62 DIDDLQSIRALRDFLRKEYGGLDVLVNNAGIA--FKVADPTPFHIQAEVTMKTNFFGTRD 119
Query: 139 MVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASK 177
+ LP + + QG +V +SS+ S+ + + S K
Sbjct: 120 VCTELLPLI--KPQGRVVNVSSIMSVRALKSCSPELQQK 156
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 102 bits (256), Expect = 5e-27
Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 29/194 (14%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
K + ++TG G+G E+ + G V+ E V L + + +D
Sbjct: 11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLD 70
Query: 80 IGNE-ASVKELGKNVHRDFGKVDILINNAGI----------------------------L 110
+ + A++ L + FGK+DIL+NNAG+
Sbjct: 71 VTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYE 130
Query: 111 TQFKILQTDITDEQIQRLFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANA 170
T E + IN G + +P + + IV +SS + +
Sbjct: 131 KPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSN 190
Query: 171 SAYAASKWARYTYT 184
T
Sbjct: 191 ETALEILGDGDALT 204
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 94.7 bits (236), Expect = 2e-24
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 56/187 (29%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIG 81
I++I+G +G+G G Q++ DI++ D+
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA------------------EVIADLS 43
Query: 82 NEASVKE-LGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMV 140
K+ + + + +D L+ AG+ + + + ++N G ++
Sbjct: 44 TAEGRKQAIADVLAKCSKGMDGLVLCAGLGP---------QTKVLGNVVSVNYFGATELM 94
Query: 141 RAFLPDMVKRNQGHIVAISSMSSMT----------------------------GVANASA 172
AFLP + K +Q V ISS++S A
Sbjct: 95 DAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLA 154
Query: 173 YAASKWA 179
YA SK A
Sbjct: 155 YAGSKNA 161
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 73.0 bits (180), Expect = 5e-16
Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 29/171 (16%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIG 81
+ V+ITGA SGLG A E +RG+ V+ A E R + G + +D+
Sbjct: 17 RTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMA----GQVEVRELDLQ 72
Query: 82 NEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMVR 141
+ +SV+ D+LINNAGI+ + +T + + N GHF +
Sbjct: 73 DLSSVRRFAD----GVSGADVLINNAGIMA----VPYALTVDGFESQIGTNHLGHFALTN 124
Query: 142 AFLPDMVKRNQGHIVAISSMSSMTGVAN-------------ASAYAASKWA 179
LP + R +V +SSM+ G N AY+ SK A
Sbjct: 125 LLLPRLTDR----VVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKLA 171
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 61.8 bits (150), Expect = 5e-12
Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 15/123 (12%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYH 77
+K K ++ +G A G++V+ + + + +N+ +
Sbjct: 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNK--RFKVNVTA 173
Query: 78 VDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHF 137
+ ++AS E + I + + Q +I I +
Sbjct: 174 AETADDASRAEA-------VKGAHFVFTAGAIGLE------LLPQAAWQNESSIEIVADY 220
Query: 138 RMV 140
Sbjct: 221 NAQ 223
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 43.5 bits (103), Expect = 1e-05
Identities = 32/173 (18%), Positives = 53/173 (30%), Gaps = 53/173 (30%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLCADIQN----EPNEETVRMLNEIRQGSAKAYHVD 79
+L+TGA LGR + + AD+ PNEE V+ D
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQ--------------CD 51
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ + +V + D +++ GI ++ +++ NI G + +
Sbjct: 52 LADANAVNAM-------VAGCDGIVHLGGI----------SVEKPFEQILQGNIIGLYNL 94
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANA-------------SAYAASKWA 179
A Q IV SS + G Y SK
Sbjct: 95 YEA----ARAHGQPRIVFASS-NHTIGYYPQTERLGPDVPARPDGLYGVSKCF 142
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 41.5 bits (98), Expect = 5e-05
Identities = 32/173 (18%), Positives = 53/173 (30%), Gaps = 53/173 (30%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLCADIQN----EPNEETVRMLNEIRQGSAKAYHVD 79
+L+TGA G+G + +V +DI + E +EE V D
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVAC--------------D 50
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRM 139
+ + +V +L D +I+ G+ + + NI G + +
Sbjct: 51 LADAQAVHDL-------VKDCDGIIHLGGV----------SVERPWNDILQANIIGAYNL 93
Query: 140 VRAFLPDMVKRNQGHIVAISSMSSMTGVANA-------------SAYAASKWA 179
A + IV SS + G S Y SK
Sbjct: 94 YEA----ARNLGKPRIVFASS-NHTIGYYPRTTRIDTEVPRRPDSLYGLSKCF 141
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 39.6 bits (93), Expect = 3e-04
Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 44/185 (23%)
Query: 12 SPPPRKEIKDKIVLITGAGSG-LGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ 70
P + + GA +G LG A G ++ + + + E R
Sbjct: 4 EQPLSRPGAHVKYAVLGA-TGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRV 62
Query: 71 GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFN 130
++ + A ++ + +D +I +AG + Q
Sbjct: 63 A-------EMLDHAGLERALRG-------LDGVIFSAGY--------YPSRPRRWQEEVA 100
Query: 131 INITGHFRMVRAFLPDMVKRNQGHIVAISSMSSM----------------TGVANASAYA 174
+ A L V R I+ + S +M + + S+Y
Sbjct: 101 SALGQTNPFYAACLQARVPR----ILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYV 156
Query: 175 ASKWA 179
KWA
Sbjct: 157 LCKWA 161
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 39.6 bits (92), Expect = 3e-04
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIGNE 83
VLI GA +G+ +A + + ++ + A + I +
Sbjct: 13 VLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQ 72
Query: 84 ASVKELGKNVHRDFGKVDILINNAGILTQFKILQ 117
+++++ K D V + IL Q +++
Sbjct: 73 EAMEKILKEHEIDI--VVSTVGGESILDQIALVK 104
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 39.2 bits (92), Expect = 3e-04
Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 44/172 (25%)
Query: 23 IVLITGAGSGLGRELALEFVKRG--SQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDI 80
++L+TG+ +G EL ++ V+ +DI K +D+
Sbjct: 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG------------GIKFITLDV 48
Query: 81 GNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLF-NINITGHFRM 139
N + + +D + + AGIL E+ L +N+ G + +
Sbjct: 49 SNRDEIDRAVEK-----YSIDAIFHLAGIL--------SAKGEKDPALAYKVNMNGTYNI 95
Query: 140 VRAFLPDMVKRNQGHIVAISSMS------------SMTGVANASAYAASKWA 179
+ A + +V S++ S+T + + +K A
Sbjct: 96 LEA----AKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIA 143
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 39.5 bits (92), Expect = 3e-04
Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 16/172 (9%)
Query: 12 SPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQ-VLCADIQNEPNEETVRMLNEIRQ 70
K +ITG G G +LA RG+Q ++ R + E R+
Sbjct: 1875 GLSKTFCPPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRR 1934
Query: 71 GSAKA--YHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRL 128
+ + + + L + G V + N A +L + + T E Q +
Sbjct: 1935 QGVQVLVSTSNASSLDGARSLITEATQL-GPVGGVFNLAMVLRDAVL--ENQTPEFFQDV 1991
Query: 129 FNINITG----HFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAAS 176
+G R+ R P++ + V SS+S G A + Y +
Sbjct: 1992 SKPKYSGTANLD-RVTREACPEL-----DYFVIFSSVSCGRGNAGQANYGFA 2037
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 9e-04
Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 52/145 (35%)
Query: 29 AG-SGLGRE---LA-----LEF------V-KRGSQVLCADIQNEPNEETVRMLNEIRQGS 72
AG S LG E LA + V RG + A ++E M+ I G
Sbjct: 1760 AGHS-LG-EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI-AINPGR 1816
Query: 73 AKAYHVDIGNEASVKELGKNVHRDFGK-VDILIN-N--------AG----------ILTQ 112
A ++ +++ + + V + G V+I +N N AG +L
Sbjct: 1817 VAA----SFSQEALQYVVERVGKRTGWLVEI-VNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 113 FKI-------LQTDITDEQIQ-RLF 129
K+ LQ ++ E+++ LF
Sbjct: 1872 IKLQKIDIIELQKSLSLEEVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.001
Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 42/192 (21%)
Query: 2 TIPEFI-YSLISPPPRKEIKDKI--------VLITGAGSGLGRE-LALEFVKRGSQVLCA 51
F Y++ P +++ + VLI G G G+ +AL+ V +V C
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALD-VCLSYKVQCK 179
Query: 52 ---DI-------QNEPNEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVD 101
I N P E + ML ++ Y +D N S + N+ +
Sbjct: 180 MDFKIFWLNLKNCNSP-ETVLEMLQKLL------YQID-PNWTSRSDHSSNIKLRIHSIQ 231
Query: 102 ILINNAGILTQFK----ILQTDITDEQIQRLFNIN----ITGHFRMVRAFLPDMVKRNQG 153
+ ++ +L ++ + + FN++ +T F+ V FL
Sbjct: 232 AELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT--- 287
Query: 154 HIVAISSMSSMT 165
HI ++T
Sbjct: 288 HISLDHHSMTLT 299
Score = 37.9 bits (87), Expect = 0.001
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 32/144 (22%)
Query: 40 EFVKRGSQVLCADIQNEP-----NEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKNVH 94
FV C D+Q+ P EE ++ S + + +
Sbjct: 28 AFVD---NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-----LLSKQEEMV 79
Query: 95 RDFGKVDILINNAG-ILTQFKI------LQTDITDEQIQRLFNINITGHFRMVRAFLPDM 147
+ F + ++L N +++ K + T + EQ RL+N N + F
Sbjct: 80 QKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--------QVFAKYN 130
Query: 148 VKRNQGHIV---AISSMSSMTGVA 168
V R Q ++ A+ + V
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVL 154
Score = 37.9 bits (87), Expect = 0.001
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 76 YHVDIGNEASVKELG---------KNVHRDFGKVDILINNAGILT--QFK-ILQTDITDE 123
+H+D E + +F D+ IL+ + I+ +
Sbjct: 5 HHMDF--ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 124 QIQRLFNINITGHFRMVRAFLPDMVKRNQGHIVA 157
RLF ++ MV+ F+ ++++ N +++
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Score = 36.0 bits (82), Expect = 0.005
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 27/121 (22%)
Query: 75 AYHVDIGNEASVKELGKNVHRDFGKVDILINNAGI-----------LTQFKILQTDITDE 123
+H+ L + V DF ++ I + L Q K + I D
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD- 536
Query: 124 QIQRLFNINITGHFRMVRA---FLP----DMVKRNQGHIVAISSMSSMTGVANASAYAAS 176
N + R+V A FLP +++ ++ I+ M+ + +
Sbjct: 537 --------NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Query: 177 K 177
+
Sbjct: 589 R 589
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 37.2 bits (86), Expect = 0.002
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQV--LCADIQNEPNEETVRMLNEIRQGSAKAYHVDIG 81
+L+ GA +GR +A + G L + N E ++L + A H I
Sbjct: 7 ILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID 66
Query: 82 NEASVKELGKNVHRDFGKVDILINNAGILTQFKILQ 117
+ AS+ E KNV V + + I +Q I++
Sbjct: 67 DHASLVEAVKNVDV----VISTVGSLQIESQVNIIK 98
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 36.8 bits (85), Expect = 0.002
Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 6/98 (6%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQV--LCADIQNEPNEETVRMLNEIRQGSAKAYHVD 79
+ ++I G +G+ + + + + +V++ E R +
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64
Query: 80 IGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQ 117
+ + + K V V + I +Q I+
Sbjct: 65 MEEHEKMVSVLKQVD----IVISALPFPMISSQIHIIN 98
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 37.0 bits (86), Expect = 0.002
Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 21/170 (12%)
Query: 14 PPRKEIKDKIVLITGAGSGLGRELALEFV-KRGSQ--VLCA--DIQNEPNEETVRMLNEI 68
P VL+TG LG E+A V +RG + VL + E V L
Sbjct: 523 MPPVWDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTA- 581
Query: 69 RQG-SAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGIL--TQFKILQTDITDEQI 125
G D+ + ++ ++ ++ D + +++ AG+L +T E++
Sbjct: 582 -YGAEVSLQACDVADRETLAKVLASI-PDEHPLTAVVHAAGVLDDGVS----ESLTVERL 635
Query: 126 QRLFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAA 175
++ + G ++ PD+ +V SS+S + G YAA
Sbjct: 636 DQVLRPKVDGARNLLELIDPDV------ALVLFSSVSGVLGSGGQGNYAA 679
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 36.6 bits (85), Expect = 0.002
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 22/107 (20%)
Query: 13 PPPRKEIKDKI--VLITGAGSGLGRELALEFVKRGS-------QVLCADIQNEPNEETVR 63
R+ + + + I GA +GR+L VK GS + D+
Sbjct: 4 SSGRENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFS 63
Query: 64 MLNEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGIL 110
G+ A D+ ++L + + D++ + A I+
Sbjct: 64 -------GAVDARAADLSAPGEAEKLVEA------RPDVIFHLAAIV 97
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 36.1 bits (84), Expect = 0.004
Identities = 35/174 (20%), Positives = 56/174 (32%), Gaps = 38/174 (21%)
Query: 24 VLITGAGSG-LGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIGN 82
V ITG G +G +A ++RG +V+ D N T R + + I +
Sbjct: 24 VFITG-ICGQIGSHIAELLLERGDKVVGID-----NFATGRREHLKDHPNLTFVEGSIAD 77
Query: 83 EASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMVRA 142
A V +L ++ + D +++ A + N G +V+A
Sbjct: 78 HALVNQLIGDL-----QPDAVVHTAASYKD---------PDDWYNDTLTNCVGGSNVVQA 123
Query: 143 FLPDMVKRNQGHIVAISSMS-------------SMTGVANASAYAASKWARYTY 183
K N G V + S+YA SK A Y
Sbjct: 124 ----AKKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDY 173
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 35.7 bits (83), Expect = 0.005
Identities = 39/186 (20%), Positives = 55/186 (29%), Gaps = 50/186 (26%)
Query: 18 EIKDKIVLITGA----GSGLGRELALEFVKRGSQVLCADIQN-----EPNEETVRMLNEI 68
+ K+ LITG GS L L +K +V+ D N + N + VR L
Sbjct: 24 PAQPKVWLITGVAGFIGSNLLETL----LKLDQKVVGLD--NFATGHQRNLDEVRSLVSE 77
Query: 69 RQGS-AKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITD--EQI 125
+Q S K DI N VD +++ A +
Sbjct: 78 KQWSNFKFIQGDIRNLDDCNNA-------CAGVDYVLHQAA--------LGSVPRSINDP 122
Query: 126 QRLFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANA------------SAY 173
NI G M+ A +S SS G S Y
Sbjct: 123 ITSNATNIDGFLNMLIA----ARDAKVQSFTYAAS-SSTYGDHPGLPKVEDTIGKPLSPY 177
Query: 174 AASKWA 179
A +K+
Sbjct: 178 AVTKYV 183
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 34.5 bits (80), Expect = 0.006
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 18 EIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYH 77
E ++ G+ + G L E G +VL D ++E + + A
Sbjct: 3 ENGRYEYIVIGSEA-AGVGLVRELTAAGKKVLAVDK----SKEKIE---LLEDEGFDAVI 54
Query: 78 VDIGNEASVKELG 90
D +E+ + L
Sbjct: 55 ADPTDESFYRSLD 67
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 35.2 bits (81), Expect = 0.008
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLC---ADIQNEPNEETVRMLNEIRQGSAKAYHVDI 80
+LI G +GR + +K G+ I E +++ + DI
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDI 64
Query: 81 GNEASVKELGKNVHRDFGKVDILINNAG---ILTQFKILQ 117
+ ++ + +VDI+I AG I Q KI++
Sbjct: 65 NDHETLVKA-------IKQVDIVICAAGRLLIEDQVKIIK 97
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 34.5 bits (79), Expect = 0.011
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 13/97 (13%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIGNE 83
+LI G +G + +K G PN +L+E + A ++
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKLGHPTYVF---TRPNSSKTTLLDEFQSLGAIIVKGELDEH 70
Query: 84 ASVKELGKNVHRDFGKVDILINNAG---ILTQFKILQ 117
+ EL KVD++I+ IL QFKIL+
Sbjct: 71 EKLVEL-------MKKVDVVISALAFPQILDQFKILE 100
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 34.7 bits (80), Expect = 0.013
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 16 RKEIKDKIVLITGAGSGLGRELALEFVKRG-SQVLCADIQNEPN----EETVRMLNEIRQ 70
+ + L+ G +G+ + E KR ++ DI +E N +R
Sbjct: 30 QSVVSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHVVDI-SENNMVELVRDIRSSFGYIN 88
Query: 71 GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNA 107
G + + +DIG+ + + G+ D ++N +
Sbjct: 89 GDFQTFALDIGSIEYDAFIKAD-----GQYDYVLNLS 120
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 34.2 bits (79), Expect = 0.016
Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 42/184 (22%)
Query: 16 RKEIKDKIVLITGA----GSGLGRELALEFVKRGSQVLCADIQN---EPNEETVRMLNEI 68
+ K LITG GS L +L +K V+ D + + N + V+ L
Sbjct: 20 QLIFSPKTWLITGVAGFIGSNLLEKL----LKLNQVVIGLDNFSTGHQYNLDEVKTLVST 75
Query: 69 RQGSA-KAYHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQR 127
Q S DI + + +++ VD +++ A + + + + IT
Sbjct: 76 EQWSRFCFIEGDIRDLTTCEQV-------MKGVDHVLHQAALGSVPRSIVDPITTNA--- 125
Query: 128 LFNINITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANA------------SAYAA 175
NITG ++ A +S SS G A S YA
Sbjct: 126 ---TNITGFLNILHA----AKNAQVQSFTYAAS-SSTYGDHPALPKVEENIGNPLSPYAV 177
Query: 176 SKWA 179
+K+
Sbjct: 178 TKYV 181
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 33.9 bits (78), Expect = 0.021
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 4 PEFIYSLISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPN 58
+ Y + ++ + ITGAG + +A G V+ +D + +
Sbjct: 12 GAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEH 66
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 33.5 bits (76), Expect = 0.024
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 18 EIKDKIVLITG-AGSGLGRELALEFVKRGSQVLCAD---IQNEPNEETVRMLNEIRQGSA 73
+I VLITG +G G E ALE V+RG +++ D + + + V I
Sbjct: 31 DIYGLGVLITGDSGVGKS-ETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLL 89
Query: 74 KAYHVDIGNEASVKELGKNVHRDFGKVDILIN 105
+ + I + + G R+ + ++++
Sbjct: 90 EIRGLGIIDVMN--LFGAGAVREDTTISLIVH 119
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 33.4 bits (77), Expect = 0.030
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 20/84 (23%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIGNE 83
VL+TGA LGR + EF + + R + V++ +
Sbjct: 5 VLVTGATGLLGRAVHKEFQQNNWHAVGCGF------------RRARPKFEQ---VNLLDS 49
Query: 84 ASVKELGKNVHRDFGKVDILINNA 107
+V + + + ++++ A
Sbjct: 50 NAVHHIIHDF-----QPHVIVHCA 68
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for
structural genomics; HET: MSE; 1.50A {Streptococcus
agalactiae}
Length = 451
Score = 33.3 bits (77), Expect = 0.036
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 15 PRKEIKDKIVLITGAG-SGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNE 67
++K VL+ G SG A K G+ V D + T + L E
Sbjct: 3 TITTFENKKVLVLGLARSGEA--AARLLAKLGAIVTVNDGKPFDENPTAQSLLE 54
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 32.9 bits (76), Expect = 0.040
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 27/84 (32%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIGNE 83
V+ITGA LG++L E + D + +DI N
Sbjct: 8 VIITGANGQLGKQLQEELNPEEYDIYPFDKK----------------------LLDITNI 45
Query: 84 ASVKELGKNVHRDFGKVDILINNA 107
+ V+++ + + + I+I+ A
Sbjct: 46 SQVQQVVQEI-----RPHIIIHCA 64
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 33.2 bits (76), Expect = 0.040
Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 13/169 (7%)
Query: 12 SPPPRKEIKDKIVLITGAGSGLGRELALEFVKRG-SQVLCADIQNEPNEETVRMLNEIRQ 70
++ VL+TG G+G +A ++G + ++ + + E+ Q
Sbjct: 230 PGSGKRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQ 289
Query: 71 GSAKAYHV--DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRL 128
+ D + ++ L + D + + ++AG+ + D+T Q+ L
Sbjct: 290 LGVRVTIAACDAADREALAALLAELPED-APLTAVFHSAGVAHDDAPV-ADLTLGQLDAL 347
Query: 129 FNINITGHFRMVRAFLPDMVKRNQG--HIVAISSMSSMTGVANASAYAA 175
+T A + + V SS +++ G YAA
Sbjct: 348 MRAKLTA------ARHLHELTADLDLDAFVLFSSGAAVWGSGGQPGYAA 390
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 33.0 bits (75), Expect = 0.044
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLC-ADIQNEPNEETVRMLNEIRQGSAKAYHVDIGN 82
VLI G +G+ + + G + N + V+ML +Q AK + +
Sbjct: 7 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD 66
Query: 83 EASVKELGKNVH 94
+ + K V
Sbjct: 67 HQRLVDALKQVD 78
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 32.9 bits (76), Expect = 0.046
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 27/84 (32%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIGNE 83
+LITGA LGRE+ + + +V+ D+Q +DI N
Sbjct: 15 ILITGANGQLGREIQKQLKGKNVEVIPTDVQ----------------------DLDITNV 52
Query: 84 ASVKELGKNVHRDFGKVDILINNA 107
+V + K +++IN A
Sbjct: 53 LAVNKFFNEK-----KPNVVINCA 71
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 32.5 bits (75), Expect = 0.050
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 21/84 (25%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIGNE 83
LITGA LG EL+ +R + + +D+ +
Sbjct: 3 TLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYK----------------LDLTDF 46
Query: 84 ASVKELGKNVHRDFGKVDILINNA 107
+++ + D++IN A
Sbjct: 47 PRLEDFIIKK-----RPDVIINAA 65
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.061
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 20 KDKIVLITGAGSG-LGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEI--RQGSAKAY 76
KDK VLITGAG G +G E+ ++ G++V+ + +++ I + G+ +
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVT--TSRFSKQVTDYYQSIYAKYGAKGST 532
Query: 77 -HVDIGNEASVKELGKNVHRDFGKVDILIN 105
V N+ S +D V+ LI
Sbjct: 533 LIVVPFNQGS--------KQD---VEALIE 551
Score = 27.1 bits (60), Expect = 3.7
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 150 RNQGHIVAISSMSSMTG 166
R++G+ V +TG
Sbjct: 1367 RSEGNPVIGVFQKFLTG 1383
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 31.9 bits (73), Expect = 0.064
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ 70
K +++ G G+G ++ +++ C DI L E+++
Sbjct: 17 KKGVIVDYGCGNG---FYCKYLLEFATKLYCIDINVI-------ALKEVKE 57
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 32.0 bits (72), Expect = 0.069
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 18 EIKDKIVLITGAGSGLGR-ELALEFVKRGSQVLCADI 53
I VLITG + +G+ EL+L + RG Q++C D+
Sbjct: 13 VIDKMGVLITG-EANIGKSELSLALIDRGHQLVCDDV 48
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 31.6 bits (71), Expect = 0.12
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 14/111 (12%)
Query: 11 ISPPPRKEIKDKIVLITGAGSGLGR-------------ELALEFVKRGSQVLCADIQNEP 57
++ K VL+ GA +G G L + F + G +
Sbjct: 37 VTTEGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYN 96
Query: 58 NEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNAG 108
+ + + AK+ + D ++ + + +D G+VD +I +
Sbjct: 97 SAAFHKFAAQKG-LYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLA 146
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 31.7 bits (72), Expect = 0.12
Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 43/173 (24%)
Query: 21 DKIVLITGAGSGLGRELALEFVKRG-SQVLCADIQNEPNEETVRMLNEIRQGSAKAYHV- 78
VLITG +GR LA G +++ + + E+R + H
Sbjct: 259 SGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAA 318
Query: 79 -DIGNEASVKELGKN------VHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNI 131
D+ ++ L H AGIL ++ ++ E + +
Sbjct: 319 CDVAERDALAALVTAYPPNAVFH-----------TAGIL-DDAVI-DTLSPESFETVRGA 365
Query: 132 ---------NITGHFRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANASAYAA 175
+T + + AF V SS++ G A AYAA
Sbjct: 366 KVCGAELLHQLTADIKGLDAF------------VLFSSVTGTWGNAGQGAYAA 406
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein
phosphatase, dual activity, product, substrate,
transferase, hydrolase; 1.95A {Staphylococcus xylosus}
SCOP: c.98.2.1 c.91.1.2
Length = 314
Score = 31.5 bits (71), Expect = 0.14
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 18 EIKDKIVLITG-AGSGLGRELALEFVKRGSQVLCADI 53
++ VLITG +G G E ALE +KRG +++ D
Sbjct: 141 DVYGVGVLITGDSGIGKS-ETALELIKRGHRLVADDN 176
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 31.2 bits (71), Expect = 0.14
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLC 50
VL+ GA + R L E +G + +
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVA 50
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 31.0 bits (71), Expect = 0.16
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 54 QNEPNEETVRML-NEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILI 104
E E++V L + + + D+ N+A ++ ++ G + +
Sbjct: 41 AGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIA 92
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 31.1 bits (71), Expect = 0.17
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 37 LALEFVKRG--SQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIGNEASVKEL 89
A+ F +VL ++ + + MLN +G + + G E + ++
Sbjct: 33 AAVLFADAPCFEKVLGFQRNSKSSGYKIEMLN---RGESPLKGEEPGLEELIGKV 84
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 31.1 bits (71), Expect = 0.19
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 54 QNEPNEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILI 104
+E ++ V L E G D+ + SV + K + ++G +D ++
Sbjct: 64 LSETFKKRVDPLAE-SLGVKLTVPCDVSDAESVDNMFKVLAEEWGSLDFVV 113
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 30.8 bits (70), Expect = 0.19
Identities = 22/162 (13%), Positives = 47/162 (29%), Gaps = 35/162 (21%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSA--KAYHVDIG 81
+++ GA +G L E + RG +V VR +I+ + K D+
Sbjct: 7 IVLIGASGFVGSALLNEALNRGFEVTA----------VVRHPEKIKIENEHLKVKKADVS 56
Query: 82 NEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMVR 141
+ V E+ K D +I+ +++ I + ++
Sbjct: 57 SLDEVCEVCKG-------ADAVISAFNPGWNNP------------DIYDETIKVYLTIID 97
Query: 142 AFLPDMVKRNQGHIVAISSMSSMTGVANASAYAASKWARYTY 183
V R + + S+ + +
Sbjct: 98 GVKKAGVNR----FLMVGGAGSLFIAPGLRLMDSGEVPENIL 135
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 30.9 bits (70), Expect = 0.20
Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 18/167 (10%)
Query: 24 VLITGAGSGLGRELALEFVKRG------------SQVLCADIQNEPNEETVRMLNEIRQG 71
VL+TGA E A + G S+ + ++ E+
Sbjct: 254 VLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADL 313
Query: 72 SAKAYHV--DIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLF 129
A A V D+ + + L V D + +++ + + L + + R+
Sbjct: 314 GATATVVTCDLTDAEAAARLLAGV-SDAHPLSAVLHLPPTV-DSEPL-AATDADALARVV 370
Query: 130 NINITGHFRMVRAFL-PDMVKRNQGHIVAISSMSSMTGVANASAYAA 175
T + R +V SS++++ G A AYAA
Sbjct: 371 TAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGGAGQGAYAA 417
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 30.7 bits (70), Expect = 0.20
Identities = 22/167 (13%), Positives = 34/167 (20%), Gaps = 49/167 (29%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLC-------ADIQNEPNEETVRMLNEIRQGSAKAY 76
+ I GA G + V+ G +V + V
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVV------------- 52
Query: 77 HVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGH 136
D+ A V + D +I G G
Sbjct: 53 -GDVLQAADVDKT-------VAGQDAVIVLLGTRNDLSPTTVM-------------SEGA 91
Query: 137 FRMVRAFLPDMVKRNQGHIVAISSMSSMTGVANAS----AYAASKWA 179
+V A M +VA +S + A
Sbjct: 92 RNIVAA----MKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIR 134
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 30.6 bits (70), Expect = 0.22
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 54 QNEPNEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILI 104
Q E L E G A + D+ + + L V FG +D L+
Sbjct: 42 QAERLRPEAEKLAE-ALGGALLFRADVTQDEELDALFAGVKEAFGGLDYLV 91
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR
kinase/phosphatase, HPRK/P, P-loop, walker A BOX,
catabolite repression; 2.50A {Mycoplasma pneumoniae}
SCOP: c.98.2.1 c.91.1.2
Length = 312
Score = 30.7 bits (69), Expect = 0.23
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 18 EIKDKIVLITGAGSGLGR-ELALEFVKRGSQVLCAD 52
E+ VL+TG SG+G+ E AL+ + + + D
Sbjct: 144 EVFGVGVLLTGR-SGIGKSECALDLINKNHLFVGDD 178
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 30.6 bits (70), Expect = 0.24
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 54 QNEPNEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILI 104
QN+ + V + GS D+ +AS+ + + + + K D +
Sbjct: 43 QNDKLKGRVEEFAA-QLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFV 92
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 30.7 bits (70), Expect = 0.25
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 54 QNEPNEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILI 104
Q + ++ V L E G+ A H D+ + AS+ + + + + +GK+D L+
Sbjct: 65 QGDALKKRVEPLAE-ELGAFVAGHCDVADAASIDAVFETLEKKWGKLDFLV 114
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 30.3 bits (69), Expect = 0.31
Identities = 7/51 (13%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 54 QNEPNEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILI 104
+ ++ + GS + D+ ++A + L ++ + +D L+
Sbjct: 48 VGDRFKDRITEFAA-EFGSELVFPCDVADDAQIDALFASLKTHWDSLDGLV 97
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 30.3 bits (69), Expect = 0.31
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 37 LALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKN---- 92
++ F K G VL DI N++T+ L + + + G + +E+ +
Sbjct: 26 TSIMFAKHGVDVLGVDI----NQQTIDKLQ-----NGQISIEEPGLQEVYEEVLSSGKLK 76
Query: 93 VHRDFGKVDILI 104
V D+ I
Sbjct: 77 VSTTPEASDVFI 88
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 30.3 bits (69), Expect = 0.31
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 54 QNEPNEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILI 104
E+ VR + + GS D+ + +K L K + ++G +DI++
Sbjct: 55 ATPKLEKRVREIAK-GFGSDLVVKCDVSLDEDIKNLKKFLEENWGSLDIIV 104
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 30.2 bits (69), Expect = 0.32
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 54 QNEPNEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILI 104
NE E+ VR + + S Y +D+ E K L +V +D G +D ++
Sbjct: 40 LNESLEKRVRPIAQ-ELNSPYVYELDVSKEEHFKSLYNSVKKDLGSLDFIV 89
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 30.4 bits (69), Expect = 0.34
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 21 DKIVLITGAGSGLGRELALEFVKRG 45
VL+TG G+G ++A +RG
Sbjct: 226 TGTVLVTGGTGGVGGQIARWLARRG 250
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 29.8 bits (67), Expect = 0.45
Identities = 25/169 (14%), Positives = 44/169 (26%), Gaps = 27/169 (15%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRML------NEIRQGSAKA 75
VL+TGA G+ + + + + + L E G A
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKF------------VAKGLVRSAQGKEKIGGEADV 52
Query: 76 YHVDIGNEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITG 135
+ DI + S+ + + + K + + E Q ++ G
Sbjct: 53 FIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIG 112
Query: 136 HFRMVRAFLPDMVKRNQGHIVAISSM-----SSMTGVANASAYAASKWA 179
+ A VK IV + SM K
Sbjct: 113 QKNQIDAAKVAGVKH----IVVVGSMGGTNPDHPLNKLGNGNILVWKRK 157
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 29.5 bits (67), Expect = 0.50
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 54 QNEPNEETVRML-NEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILI 104
+ E + + + L ++ Q A Y +D+ ++ V + + +D G +D +
Sbjct: 66 RKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVY 117
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 29.5 bits (67), Expect = 0.51
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 24 VLITGAGSGLGRELA--------LEFVKRGSQVLCADIQNEPNEETVRMLNEIR 69
+L+ G +G EL L + S+ C D N + + ++R
Sbjct: 3 ILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNP--KGVAETVRKLR 54
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 29.6 bits (67), Expect = 0.52
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 15/97 (15%)
Query: 13 PPPRKEIKDKIVLITGAGSG-LGRELALEFVKRGS-QVLCADIQNEPNEETVRMLNEIRQ 70
++ + V++ G G+G +G L ++ G QV D N + +N
Sbjct: 24 IMNASKLANTNVMVVG-GAGFVGSNLVKRLLELGVNQVHVVD-----NLLSAEKINVPDH 77
Query: 71 GSAKAYHVDIGNEASVKELGKNVHRDFGKVDILINNA 107
+ + I ++A + L + D + + A
Sbjct: 78 PAVRFSETSITDDALLASL-------QDEYDYVFHLA 107
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 29.6 bits (67), Expect = 0.61
Identities = 10/77 (12%), Positives = 24/77 (31%)
Query: 16 RKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKA 75
+K+I ++V++ + LA + G +V + N +
Sbjct: 524 KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHE 583
Query: 76 YHVDIGNEASVKELGKN 92
HV+ + +
Sbjct: 584 LHVEELGDHFCSRIEPG 600
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 29.5 bits (67), Expect = 0.64
Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 6 FIYSLISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRG-SQVLCADIQNEPNEETVRM 64
I ++ +++ K +++ GAG G + + G ++ + +++ E+ V
Sbjct: 135 HIRAIKESGF--DMRGKTMVLLGAG-GAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAF 191
Query: 65 LNEIRQG-SAKAYHVDIGNEASVKELGKNVHRDFGKVDILIN 105
+ + D+ ++ + E DIL N
Sbjct: 192 AKRVNENTDCVVTVTDLADQHAFTEA-------LASADILTN 226
>3pty_A Arabinosyltransferase C; beta-sandwich, carbohydrate binding,
carbohydrate; HET: AFO; 2.00A {Mycobacterium
tuberculosis}
Length = 406
Score = 29.5 bits (66), Expect = 0.65
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 8 YSLISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRG 45
Y L P + + ++++T AG RE+ L++
Sbjct: 151 YRL--PTNEQRDRAPLLVVTAAGRFDSREVRLQWATDE 186
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 29.3 bits (66), Expect = 0.72
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 13 PPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCAD 52
E K +LITG +G L + + G +V D
Sbjct: 19 FQGHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVD 58
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 29.3 bits (65), Expect = 0.73
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADI 53
+ LI G +G LA + +
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKV 33
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 29.0 bits (65), Expect = 0.84
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ 70
+D +L G GSG ++LE +G V DI N E +
Sbjct: 30 EDDEILDIGCGSGK---ISLELASKGYSVTGIDI----NSE---AIRLAET 70
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 28.9 bits (65), Expect = 0.86
Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 37/146 (25%)
Query: 22 KIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIG 81
+LI G G LG ELA +G +V R + G + D+
Sbjct: 4 SKILIAGCGD-LGLELARRLTAQGHEVTG----------LRRSAQPMPAG-VQTLIADVT 51
Query: 82 NEASVKELGKNVHRDFGKVDILINNAGILTQFKILQTDITDEQIQRLFNINITGHFRMVR 141
++ + + +IL+ ++ +DE + + + G +
Sbjct: 52 RPDTLASI------VHLRPEILVYCVA--------ASEYSDEHYRLSY---VEGLRNTLS 94
Query: 142 AFLPDMVKRNQGHIVAISSMSSMTGV 167
A ++ + +SS TGV
Sbjct: 95 ALEGAPLQH----VFFVSS----TGV 112
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 29.2 bits (66), Expect = 0.91
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 1 MTIPEFIYSLISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCAD 52
+ + + + + + +K +L+ G+G LG+E+A+E + G +V+ D
Sbjct: 5 IKLRDELGTATTDSAQK------ILLLGSGE-LGKEIAIEAQRLGVEVVAVD 49
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 28.8 bits (65), Expect = 0.92
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLC 50
+ I G+ +G+ L Q+
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYA 29
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 28.3 bits (64), Expect = 1.3
Identities = 6/51 (11%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 54 QNEPNEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILI 104
+ + ++ E A D+ ++ +K+L + + + +D ++
Sbjct: 60 VGQFKDRVEKLCAEF--NPAAVLPCDVISDQEIKDLFVELGKVWDGLDAIV 108
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 28.6 bits (64), Expect = 1.4
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 12 SPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCAD 52
+K K VLI G +G L+ ++ +
Sbjct: 15 QTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGM 55
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 28.1 bits (63), Expect = 1.5
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 21 DKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETV 62
KIV++ G G LG A G + D ++ E++
Sbjct: 22 HKIVIVGGYG-KLGGLFARYLRASGYPISILDREDWAVAESI 62
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 27.9 bits (62), Expect = 1.7
Identities = 7/72 (9%), Positives = 28/72 (38%)
Query: 33 LGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIGNEASVKELGKN 92
+ + P + + N+I + + ++ +++++
Sbjct: 47 YKNGKFDNDMIIDKDKKMNILDMLPFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANL 106
Query: 93 VHRDFGKVDILI 104
+H+ +GK+++L+
Sbjct: 107 IHQKYGKINMLV 118
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 27.9 bits (61), Expect = 1.8
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 14 PPRKEIKDKIVLITGAG-SGLGRELALEFVKRGSQV 48
PR K + I GAG +GL L L + V
Sbjct: 15 VPRGSHMKKRIGIVGAGTAGL--HLGLFLRQHDVDV 48
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 27.7 bits (61), Expect = 2.1
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQV 48
+ + GA G + E +RG +V
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEV 27
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 28.0 bits (63), Expect = 2.3
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 16 RKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIR-QGSAK 74
R K+V+ LG +A ++G +V + + T R Q
Sbjct: 519 RLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLI 578
Query: 75 AYHVDIGNEASVKE 88
V + +V
Sbjct: 579 ENGVARVTDHAVVA 592
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 27.8 bits (62), Expect = 2.5
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 24 VLITGAGSGLGRELALEFVK-RGSQVLCADIQNEPNEETVRML------NEIRQGSAKAY 76
VLI GA GLG A +F G+ +C + + E R + + +G
Sbjct: 232 VLIWGASGGLGS-YATQFALAGGANPICV-VSSPQKAEICRAMGAEAIIDRNAEGYRFWK 289
Query: 77 HVDIGNEASVKELGKNVHRDFGK--VDILINNAG 108
+ + K GK + G +DI+ + G
Sbjct: 290 DENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPG 323
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 27.4 bits (61), Expect = 2.8
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 21/95 (22%)
Query: 24 VLITGAGS-GLGRELALEFVK-RGSQVLCADIQNEPNEETVRMLNEIRQGSAKAYHVDIG 81
VL+ G G G+ L + G +V A+ + + + + + Y+
Sbjct: 184 VLVVGTGPIGV---LFTLLFRTYGLEVWMANRREPT-----EVEQTVIEETKTNYYNSSN 235
Query: 82 NEASVKELGKNVHRDFGKVDILI----NNAGILTQ 112
+K+ GK D++I + IL
Sbjct: 236 GYDKLKDSV-------GKFDVIIDATGADVNILGN 263
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related
protein; ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 27.1 bits (60), Expect = 2.9
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADIQNEPNEETVRMLNEIRQ 70
VL G G+G + +L +RG +V+ D ++E ML R+
Sbjct: 54 NPCRVLDLGGGTG---KWSLFLQERGFEVVLVDP----SKE---MLEVARE 94
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 26.9 bits (59), Expect = 3.6
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQV 48
+ I GA G + E RG +V
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEV 27
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 26.8 bits (60), Expect = 4.4
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 6 FIYSLISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRG-SQVLCADIQNEPNEETVRM 64
++ +L +I K + I GAG G + ++ G ++ + +++ +
Sbjct: 141 YMRALKEAGH--DIIGKKMTICGAG-GAATAICIQAALDGVKEISIFNRKDDFYANAEKT 197
Query: 65 LNEIR-QGSAKAYHVDIGNEASVKELGKNVHRDFGKVDILIN 105
+ +I + KA DI + +++ + I N
Sbjct: 198 VEKINSKTDCKAQLFDIEDHEQLRKE-------IAESVIFTN 232
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 26.8 bits (59), Expect = 5.0
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 20 KDKIVLITGAGSG-LGRELALEFVKRGSQVLCA 51
+ K L+TGAG+G +G E+ + G++V+
Sbjct: 651 QGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVT 683
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 26.5 bits (59), Expect = 5.1
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 13 PPPRKEIKDKIVLITGAGSGLGRELA 38
P + +K + +LI G GS +G+ +A
Sbjct: 132 SHPYQGLKGRTLLILGTGS-IGQHIA 156
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 26.4 bits (59), Expect = 5.5
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 29/82 (35%)
Query: 22 KIVLITGAGSG-LGRELALEFVKRGSQVLC-------------ADIQNEPNEETVRMLNE 67
+LITG G G LG LA + +G ++ + + N
Sbjct: 2 AKLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGN--------- 51
Query: 68 IRQGSAKAYHVDIGNEASVKEL 89
+ H DI N+ V L
Sbjct: 52 -----FEFVHGDIRNKNDVTRL 68
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 26.5 bits (58), Expect = 6.2
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 20 KDKIVLITGAGSG-LGRELALEFVKRGSQVLCA 51
KDK VLITGAG G +G E+ ++ G++V+
Sbjct: 674 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVT 706
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 26.3 bits (57), Expect = 7.4
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 13 PPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQVLCAD 52
PP IV + G G GL A +G V+
Sbjct: 167 LPPEPGPFPGIVDMFGTGGGLLEYRASLLAGKGFAVMALA 206
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1,
ATP-grAsp domain, carbamoylphosphate synthase subunit
(split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 26.0 bits (57), Expect = 7.6
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 20 KDKIVLITGAGSGLGRELALEFVKRGSQVLCADI 53
+ +LIT AG + +V AD
Sbjct: 3 QKPHLLITSAGRRAKLVEYFVKEFKTGRVSTADC 36
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 26.1 bits (58), Expect = 7.8
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 24 VLITGAGSGLGRELALEFVKRGSQVLCA 51
+++TGA LG + + +
Sbjct: 3 IMLTGATGHLGTHITNQAIANHIDHFHI 30
>2b0f_A Picornain 3C (protease 3C) (P3C); beta barrel, hydrolase-hydrolase
inhibitor complex; HET: CA1; NMR {Human rhinovirus 14}
PDB: 2in2_A
Length = 182
Score = 25.7 bits (56), Expect = 8.1
Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 92 NVHRDFGKVDILINNAGILTQFKIL-QTDITDEQIQRL----FNINITGHFRMVRAFLPD 146
H G D+L+N + ++ + + D + L ++ FR +R F+ +
Sbjct: 38 PTHAQPGD-DVLVNG----QKIRVKDKYKLVDPENINLELTVLTLDRNEKFRDIRGFISE 92
Query: 147 MVKRNQGHIVAISSMSSMTGV 167
++ +V S+ + T +
Sbjct: 93 DLEGVDATLVVHSNNFTNTIL 113
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 26.0 bits (58), Expect = 8.1
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 6 FIYSLISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGSQV 48
F+ SL S P E+K+K +L+ GAG G R + VK G++V
Sbjct: 116 FLKSLKSLIP--EVKEKSILVLGAG-GASRAVIYALVKEGAKV 155
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 26.1 bits (58), Expect = 8.2
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 13 PPPRKEIKDKIVLITGAGSGLGRELA 38
P P ++ V I GAG LG ++A
Sbjct: 131 PLPEYTREEFSVGIMGAGV-LGAKVA 155
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 26.0 bits (57), Expect = 8.8
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 3 IPEFIYSLISPPPRKEIKDKIVLITGAGSGLGRELALEFVKRGS---QVLC 50
I + P + + VL+TGA LGR L LE ++R +++C
Sbjct: 55 IDADTLATAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLIC 105
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.66A {Ruegeria
pomeroyi dss-3}
Length = 286
Score = 25.6 bits (56), Expect = 9.4
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 21 DKIVLITGAGSGLGRELALEFVKRGSQVLC 50
+L G G R L+ +G +++
Sbjct: 5 TGTLLSFGHGY-TARVLSRALAPQGWRIIG 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.379
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,833,026
Number of extensions: 167199
Number of successful extensions: 1474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1001
Number of HSP's successfully gapped: 308
Length of query: 185
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,244,745
Effective search space: 411740265
Effective search space used: 411740265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.4 bits)