BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15157
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 110/262 (41%), Gaps = 48/262 (18%)
Query: 89 GPGLDLEFESDVDPSAPEPAQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKIL-- 146
GP EF+S P P A T + H + FS +G+ A+ S D IKI
Sbjct: 1 GPLGSPEFQSKPTPVKPNYALKFT--LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 147 -----------------DV-----DRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTC 184
DV +L +S + + D ++TL H V C
Sbjct: 59 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFC 118
Query: 185 LEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDH 244
F+P + ++ SGS D++V+++D +CL P +D
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLP------AHSDP 157
Query: 245 FVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSS 304
++ DG + S S DG +IWD S +C+ T D +S + F+ NGKY+L++
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAA 216
Query: 305 GKDSLVKLWELSSARCLIAYTG 326
D+ +KLW+ S +CL YTG
Sbjct: 217 TLDNTLKLWDYSKGKCLKTYTG 238
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 153 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 195
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 254
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 255 -----------------GKWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 296
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 297 ENIIASAALENDKTIKLWK 315
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 126
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 127 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPA 171
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
V HF + DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 172 HSDPVSAV-HF-----NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 224
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 225 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 256
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 171 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 213
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 214 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 272
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 273 -----------------GKWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 314
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 315 ENIIASAALENDKTIKLWK 333
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 124
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPA 169
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
V HF + DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 170 HSDPVSAV-HF-----NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 222
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 223 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 254
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 169 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 211
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 212 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 270
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 271 -----------------GKWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 312
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 313 ENIIASAALENDKTIKLWK 331
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 102
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPA 147
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
V HF + DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 148 HSDPVSAV-HF-----NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 200
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 189
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 248
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 249 -----------------GKWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 290
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 291 ENIIASAALENDKTIKLWK 309
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 280 FSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
F+ A +SS+ F+ NG++L SS D L+K+W
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 108
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLP- 152
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
+D ++ DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 153 -----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 206
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 153 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 195
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 254
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 255 -----------------GKWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 296
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 297 ENIIASAALENDKTIKLWK 315
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 280 FSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
F+ A +SS+ F+ NG++L SS D L+K+W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 102
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLP- 146
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
+D ++ DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 147 -----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 200
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 147 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 189
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 248
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 249 -----------------GKWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 290
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 291 ENIIASAALENDKTIKLWK 309
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 280 FSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
F+ A +SS+ F+ NG++L SS D L+K+W
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 119
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 120 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPA 164
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
V HF + DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 165 HSDPVSAV-HF-----NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 217
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 218 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 249
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 164 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 206
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 207 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 265
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 266 -----------------GKWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 307
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 308 ENIIASAALENDKTIKLWK 326
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 280 FSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
F+ A +SS+ F+ NG++L SS D L+K+W
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 67
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 98
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 99 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLP- 142
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
+D ++ DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 143 -----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 196
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 197 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 228
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 143 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 185
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 186 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 244
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 245 -----------------GKWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 286
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 287 ENIIASAALENDKTIKLWK 305
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 280 FSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
F+ A +SS+ F+ NG++L SS D L+K+W
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 46
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 101
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 102 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLP- 145
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
+D ++ DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 146 -----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 199
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 200 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 231
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 146 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 188
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 189 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 247
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 248 -----------------GKWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 289
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 290 ENIIASAALENDKTIKLWK 308
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 280 FSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
F+ A +SS+ F+ NG++L SS D L+K+W
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 49
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 108
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLP- 152
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
+D ++ DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 153 -----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 206
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 207 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 153 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 195
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 254
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 255 -----------------GKWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 296
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 297 ENIIASAALENDKTIKLWK 315
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 280 FSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
F+ A +SS+ F+ NG++L SS D L+K+W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 103
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 104 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLPA 148
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
V HF + DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 149 HSDPVSAV-HF-----NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 201
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 202 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 233
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 148 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 190
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 191 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 249
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 250 -----------------GKWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 291
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 292 ENIIASAALENDKTIKLWK 310
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 280 FSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
F+ A +SS+ F+ NG++L SS D L+K+W
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 51
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 105
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLP- 149
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
+D ++ DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 150 -----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 203
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 192
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 251
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 252 -----------------GKWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 293
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 294 ENIIASAALENDKTIKLWK 312
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 280 FSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
F+ A +SS+ F+ NG++L +S D L+K+W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIW 53
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 107
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 108 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLP- 151
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
+D ++ DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 152 -----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 205
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 206 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 237
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 152 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 194
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 195 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 253
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 254 -----------------GKWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 295
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 296 ENIIASAALENDKTIKLWK 314
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 280 FSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
F+ A +SS+ F+ NG++L SS D L+K+W
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 55
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 105
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLP- 149
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
+D ++ DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 150 -----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 203
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 35/154 (22%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 192
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 251
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
G+ SGS+D + IW+
Sbjct: 252 -----------------GKWIVSGSEDNLVYIWN 268
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 280 FSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
F+ A +SS+ F+ NG++L SS D L+K+W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 105
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D +CL P
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------------KCLKTLP- 149
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
+D ++ DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 150 -----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 203
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 35/154 (22%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 192
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 251
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
G+ SGS+D + IW+
Sbjct: 252 -----------------GKWIVSGSEDNLVYIWN 268
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 280 FSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
F+ A +SS+ F+ NG++L SS D L+K+W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 105
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D ++ ++ L H
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------------VKTGMCLKTLPAH-- 151
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
+D ++ DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 152 -------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 203
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 192
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D T+K++DYSK K + + + +F G
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 251
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 252 -----------------GKWIVSGSEDNMVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 293
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 294 ENIIASAALENDKTIKLWK 312
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 40/212 (18%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
++ HK A+S D L + S D ++KI DV ++T
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV------------------SSGKCLKT 105
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V C F+P + ++ SGS D++V+++D ++ ++ L H
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------------VKTGMCLKTLPAH-- 151
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
+D ++ DG + S S DG +IWD S +C+ T D +S + F
Sbjct: 152 -------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKF 203
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ NGKY+L++ D+ +KLW+ S +CL YTG
Sbjct: 204 SPNGKYILAATLDNDLKLWDYSKGKCLKTYTG 235
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 37/199 (18%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
+H P A F+ DG L + S D +I D G + +
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----------------ASGQCLKTLID 192
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D V+ ++F P+ + + + D +K++DYSK K + + + +F G
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG- 251
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-T 295
G+ SGS+D + IW+ + +K + + H IS+ T
Sbjct: 252 -----------------GKWIVSGSEDNMVYIWN-LQTKEIVQKLQGHTDVVISTACHPT 293
Query: 296 RNGKYLLSSGKDSLVKLWE 314
N + D +KLW+
Sbjct: 294 ENIIASAALENDKTIKLWK 312
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 48/238 (20%)
Query: 111 ETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHP 170
E + +H S R AFS DGQ A+ S D ++K+ + + L
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL------------------ 49
Query: 171 VIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLS 230
++TL H V + F P +AS S DKTVK+++ + ++ S+ VR ++
Sbjct: 50 -LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSVRGVA 105
Query: 231 FHPCGDYMVVGTDHFVLRLY----------------------SSDGRIYCSGSKDGDIKI 268
F P G + +D ++L+ S DG+ S S D +K+
Sbjct: 106 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165
Query: 269 WDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
W+ + + + T + H + + + F+ +G+ + S+ D VKLW + + L TG
Sbjct: 166 WN-RNGQLLQTLT-GHS-SSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 219
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 48/234 (20%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
+T H S R AFS DGQ A+ S D ++K+ + + L ++T
Sbjct: 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-------------------LQT 257
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V + F P +AS S DKTVK+++ + ++ S+ V ++F P
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSVWGVAFSPD 314
Query: 235 GDYMVVGTDHFVLRLY----------------------SSDGRIYCSGSKDGDIKIWDGV 272
G + +D ++L+ S DG+ S S D +K+W+
Sbjct: 315 GQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-R 373
Query: 273 SSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ + + T + H + + + F+ +G+ + S+ D VKLW + + L TG
Sbjct: 374 NGQLLQTLT-GHS-SSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 424
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 48/234 (20%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
+T H S AFS DGQ A+ S D ++K+ + + L ++T
Sbjct: 53 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-------------------LQT 93
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L H V + F P +AS S DKTVK+++ + ++ S+ V ++F P
Sbjct: 94 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSVWGVAFSPD 150
Query: 235 GDYMVVGTDHFVLRLY----------------------SSDGRIYCSGSKDGDIKIWDGV 272
G + +D ++L+ S DG+ S S D +K+W+
Sbjct: 151 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-R 209
Query: 273 SSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ + + T + H + + + F+ +G+ + S+ D VKLW + + L TG
Sbjct: 210 NGQLLQTLT-GHS-SSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 260
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 49/223 (21%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDV-----------------------DRM 151
+T H S R AFS DGQ A+ S D ++K+ + D+
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQT 440
Query: 152 LAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKS 211
+A +S + + ++ G +++TL H V + F P +AS S DKTVK+++ +
Sbjct: 441 IASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 499
Query: 212 SVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDG 271
++ S+ VR ++F P DG+ S S D +K+W+
Sbjct: 500 LLQTL---TGHSSSVRGVAFSP-------------------DGQTIASASDDKTVKLWN- 536
Query: 272 VSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWE 314
+ + + T + H + + + F+ +G+ + S+ D VKLW
Sbjct: 537 RNGQLLQTLT-GHS-SSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 44/227 (19%)
Query: 98 SDVDPSAPEPAQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSM 157
SD + +P T+ S R+ FS DG+ ATG+ D I+I D+
Sbjct: 102 SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI--------- 152
Query: 158 ESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAH 217
+ ++ L H +++ L++ PS L SGS D+TV+++D +
Sbjct: 153 ---------ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG---QCS 200
Query: 218 KTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCV 277
T+ V ++ P DG+ +GS D +++WD + V
Sbjct: 201 LTLSIEDGVTTVAVSP------------------GDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 278 ATFSKAHDGA-----EISSLTFTRNGKYLLSSGKDSLVKLWELSSAR 319
++ + S+ FTR+G+ ++S D VKLW L +A
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 217 HKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKC 276
HK++ ++ V C+ F G+Y+ G + SDG + S D +
Sbjct: 58 HKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN----KDPEN 113
Query: 277 VATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ T S I S+ F+ +GK+L + +D L+++W++ + + ++ G
Sbjct: 114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 163
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL 175
T HK + F+ DGQ +GS+D S+K+ ++ +++ S+ + G + T
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL-----QNANNKSDSKTPNSGTCEV-TY 306
Query: 176 YDHIEEVTCLEFHPSAPILASGSKDKTVKMFD 207
H + V + + + SGSKD+ V +D
Sbjct: 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 117/318 (36%), Gaps = 76/318 (23%)
Query: 72 KRMEPSIGLNPIQEILIGPGLDLEFESDVDPSAPEPAQYETAYVTSHKSPCRAGAFSIDG 131
K ME LN +E G DP P E ++ H+SP F
Sbjct: 64 KVMELESKLNEAKEEFTSGG---PLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120
Query: 132 QLCATGSVDASIKILDVD------------------------RMLAKSSMESSEPQNDQQ 167
+ + S DA+IK+ D + ++LA S + + D Q
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 168 GHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRK---AHKTI---- 220
G IRT++ H V+ + P+ + S S+DKT+KM++ K H+
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240
Query: 221 ---QESTF------------------------------VRCLSFHPCGDYMVV----GTD 243
Q+ T V C+S+ P Y + G++
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300
Query: 244 HFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLS 303
+ G SGS+D IK+WD + C+ T HD + + F GK++LS
Sbjct: 301 ---TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNW-VRGVLFHSGGKFILS 355
Query: 304 SGKDSLVKLWELSSARCL 321
D +++W+ + RC+
Sbjct: 356 CADDKTLRVWDYKNKRCM 373
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 41/209 (19%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVI--- 172
T H+ R + DG L A+ S D ++++ V K+ + + H V
Sbjct: 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-------EHRHVVECIS 283
Query: 173 ---RTLYDHIEEVTCLEFHPSA---PILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFV 226
+ Y I E T E S P L SGS+DKT+KM+D S
Sbjct: 284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--------------- 328
Query: 227 RCLSFHPCGDYMVVGTDHFVLR-LYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHD 285
CL +VG D++V L+ S G+ S + D +++WD + +C+ T + AH+
Sbjct: 329 MCL-------MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHE 380
Query: 286 GAEISSLTFTRNGKYLLSSGKDSLVKLWE 314
++SL F + Y+++ D VK+WE
Sbjct: 381 HF-VTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 38/188 (20%)
Query: 149 DRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDY 208
DR L + E+ E I TLY H V C+ H + SGS+D T++++D
Sbjct: 178 DRTLKVWNAETGE---------CIHTLYGHTSTVRCMHLHEKRVV--SGSRDATLRVWDI 226
Query: 209 SKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKI 268
H + VRC+ + DGR SG+ D +K+
Sbjct: 227 ETGQC--LHVLMGHVAAVRCVQY---------------------DGRRVVSGAYDFMVKV 263
Query: 269 WDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTGAG 328
WD + C+ T + H + SL F +G +++S D+ +++W++ + C+ TG
Sbjct: 264 WDPETETCLHTL-QGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 319
Query: 329 SMGQQFEL 336
S+ EL
Sbjct: 320 SLTSGMEL 327
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 45/182 (24%)
Query: 109 QYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDV-------------------- 148
+ ET T R + DG +GS+D SI++ DV
Sbjct: 267 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 326
Query: 149 --DRMLAKSSMESSEPQNDQQGHPVIRTLY---DHIEEVTCLEFHPSAPILASGSKDKTV 203
D +L + +S+ D + ++TL H VTCL+F+ + I + S D TV
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI--TSSDDGTV 384
Query: 204 KMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCS-GSK 262
K++D ++ F+R L G G+ V R+ +S+ ++ C+ GS+
Sbjct: 385 KLWD------------LKTGEFIRNLVTLESG-----GSGGVVWRIRASNTKLVCAVGSR 427
Query: 263 DG 264
+G
Sbjct: 428 NG 429
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 27/122 (22%)
Query: 226 VRCLSFHPCGDYMVVGTDHFVLRLYSS---------------------DGRIYCSGSKDG 264
+ CL F CG+ +V G+D L+++S+ I SGS D
Sbjct: 122 ITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR 179
Query: 265 DIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAY 324
+K+W+ + +C+ T G + + K ++S +D+ +++W++ + +CL
Sbjct: 180 TLKVWNAETGECIHTLY----GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 235
Query: 325 TG 326
G
Sbjct: 236 MG 237
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 243 DHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLL 302
DH + L RI SGS D +K+W V+ KC+ T H G SS ++
Sbjct: 119 DHVITCLQFCGNRIV-SGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSS---QMRDNIII 173
Query: 303 SSGKDSLVKLWELSSARCLIAYTGAGS 329
S D +K+W + C+ G S
Sbjct: 174 SGSTDRTLKVWNAETGECIHTLYGHTS 200
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 48/240 (20%)
Query: 108 AQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQ 167
Q E + ++P RAG F GS D I++ + + + E D +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN---------TGEKVVDFE 94
Query: 168 GHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVR 227
HP D+I + HP+ P + SGS D TVK++++ + + E FV
Sbjct: 95 AHP------DYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVM 144
Query: 228 CLSFHP---------CGDYMVV------GTDHFVLRLYSSDGRIYC------------SG 260
C++F+P C D V T +F L G Y +
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 261 SKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARC 320
S D IKIWD + CVAT + H + +S F ++S +D +K+W S+ +
Sbjct: 205 SDDLTIKIWDYQTKSCVATL-EGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 165 DQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQEST 224
D Q + TL H+ V+ FHP+ PI+ SGS+D T+K+++ S V K E +
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS 273
Query: 225 FVRCLSFHPCG--DYMVVGTDH 244
+ C++ HP G +Y+ G D+
Sbjct: 274 W--CIATHPTGRKNYIASGFDN 293
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 48/240 (20%)
Query: 108 AQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQ 167
Q E + ++P RAG F GS D I++ + + + E D +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN---------TGEKVVDFE 94
Query: 168 GHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVR 227
HP D+I + HP+ P + SGS D TVK++++ + + E FV
Sbjct: 95 AHP------DYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVM 144
Query: 228 CLSFHP---------CGDYMVV------GTDHFVLRLYSSDGRIYC------------SG 260
C++F+P C D V T +F L G Y +
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 261 SKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARC 320
S D IKIWD + CVAT + H + +S F ++S +D +K+W S+ +
Sbjct: 205 SDDLTIKIWDYQTKSCVATL-EGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 165 DQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQEST 224
D Q + TL H+ V+ FHP+ PI+ SGS+D T+K+++ S V K E +
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS 273
Query: 225 FVRCLSFHPCG--DYMVVGTDH 244
+ C++ HP G +Y+ G D+
Sbjct: 274 W--CIATHPTGRKNYIASGFDN 293
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 95/239 (39%), Gaps = 48/239 (20%)
Query: 109 QYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQG 168
Q E + ++P RAG F GS D I++ + + + E D +
Sbjct: 45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN---------TGEKVVDFEA 95
Query: 169 HPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRC 228
HP D+I + HP+ P + SGS D TVK++++ + + E FV C
Sbjct: 96 HP------DYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVMC 145
Query: 229 LSFHP---------CGDYMVV------GTDHFVLRLYSSDGRIYC------------SGS 261
++F+P C D V T +F L G Y + S
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 262 KDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARC 320
D IKIWD + CVAT + H + +S F ++S +D +K+W S+ +
Sbjct: 206 DDLTIKIWDYQTKSCVATL-EGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 165 DQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQEST 224
D Q + TL H+ V+ FHP+ PI+ SGS+D T+K+++ S V K E +
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS 273
Query: 225 FVRCLSFHPCG--DYMVVGTDH-FVLRLYSSD---------GRIYCSGSKD 263
+ C++ HP G +Y+ G D+ F + +D G++ SG K+
Sbjct: 274 W--CIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKN 322
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 48/240 (20%)
Query: 108 AQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQ 167
Q E + ++P RAG F GS D I++ + + + E D +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN---------TGEKVVDFE 94
Query: 168 GHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVR 227
HP D+I + HP+ P + SGS D TVK++++ + + E FV
Sbjct: 95 AHP------DYIRSIAV---HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH-FVM 144
Query: 228 CLSFHP---------CGDYMVV------GTDHFVLRLYSSDGRIYC------------SG 260
C++F+P C D V T +F L G Y +
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204
Query: 261 SKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARC 320
S D IKIWD + CVAT + H + +S F ++S +D +K+W S+ +
Sbjct: 205 SDDLTIKIWDYQTKSCVATL-EGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 165 DQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQEST 224
D Q + TL H+ V+ FHP+ PI+ SGS+D T+K+++ S V K E +
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS 273
Query: 225 FVRCLSFHPCG--DYMVVGTDH-FVLRLYSSD---------GRIYCSGSKD 263
+ C++ HP G +Y+ G D+ F + +D G++ SG K+
Sbjct: 274 W--CIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKN 322
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
H++ ++ A++ G L AT S D S+ + +VD ++ + + L
Sbjct: 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVD---------------EEDEYECVSVLNS 148
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMF-----DYSKSSVRKAHKTIQESTFVRCLSFH 232
H ++V + +HPS +LAS S D TVK++ D+ + + H EST V L+F
Sbjct: 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH----EST-VWSLAFD 203
Query: 233 PCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAH 284
P G + +D +R++ R Y G++ G S KC+ T S H
Sbjct: 204 PSGQRLASCSDDRTVRIW----RQYLPGNEQGVACSGSDPSWKCICTLSGFH 251
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 36/197 (18%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
H+ R A+S G A+ S DA+ I + +Q + TL
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIW----------------KKNQDDFECVTTLEG 103
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTF-VRCLSFHPCGD 236
H EV + + PS +LA+ S+DK+V +++ + + + T V+ + +HP +
Sbjct: 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTR 296
+ + ++LY + + C AT + H+ + + SL F
Sbjct: 164 LLASASYDDTVKLYREEEDDW-----------------VCCATL-EGHE-STVWSLAFDP 204
Query: 297 NGKYLLSSGKDSLVKLW 313
+G+ L S D V++W
Sbjct: 205 SGQRLASCSDDRTVRIW 221
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 85/203 (41%), Gaps = 45/203 (22%)
Query: 128 SIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEF 187
S++ + +GS D ++++ D+ R+ +++ +RT + H ++ ++F
Sbjct: 215 SLNANMFISGSCDTTVRLWDL-RITSRA----------------VRTYHGHEGDINSVKF 257
Query: 188 HPSAPILASGSKDKTVKMFDYSKSS-----VRKAHKTIQESTFVRCLSFHPCGDYMVVGT 242
P +GS D T ++FD R+ + E V ++F
Sbjct: 258 FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF----------- 306
Query: 243 DHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCV---ATFSKAHDGAEISSLTFTRNGK 299
S GR+ +G +GD +WD + ++ V T +H+G IS L + +G
Sbjct: 307 --------SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG-RISCLGLSSDGS 357
Query: 300 YLLSSGKDSLVKLWELSSARCLI 322
L + D +K+W S R ++
Sbjct: 358 ALCTGSWDKNLKIWAFSGHRKIV 380
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 32/203 (15%)
Query: 126 AFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGH-PVIRTLYDHIEEVTC 184
AF+ +GQ A G +D++ I ++ Q D+ G+ PV R L H +
Sbjct: 115 AFAPNGQSVACGGLDSACSIFNL------------SSQADRDGNMPVSRVLTGHKGYASS 162
Query: 185 LEFHPSAPI-LASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTD 243
++ P L +GS D+T ++D + +I S F P G D
Sbjct: 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQ----RISIFGSEF-------PSGHT----AD 207
Query: 244 HFVLRLYSSDGRIYCSGSKDGDIKIWD-GVSSKCVATFSKAHDGAEISSLTFTRNGKYLL 302
L + S + ++ SGS D +++WD ++S+ V T+ H+G +I+S+ F +G+
Sbjct: 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY-HGHEG-DINSVKFFPDGQRFG 265
Query: 303 SSGKDSLVKLWELSSARCLIAYT 325
+ D +L+++ + L Y
Sbjct: 266 TGSDDGTCRLFDMRTGHQLQVYN 288
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 32/154 (20%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
H+ + F DGQ TGS D + ++ D+ R + + + EP + P+
Sbjct: 248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDM-RTGHQLQVYNREPDRNDNELPI------ 300
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQES--TFVRCLSFHPCG 235
VT + F S +L +G + ++D + + T+Q S + CL
Sbjct: 301 ----VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL---- 352
Query: 236 DYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIW 269
SSDG C+GS D ++KIW
Sbjct: 353 ---------------SSDGSALCTGSWDKNLKIW 371
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 28/161 (17%)
Query: 174 TLYDHIEEVTCLEFH-PSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
T+ H + VT + +A I+ S S+DK++ ++ +K KA+ Q R L+ H
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDD--KAYGVAQ-----RRLTGH 429
Query: 233 PCGDYMVVGTDHFVLRL-YSSDGRIYCSGSKDGDIKIWD---GVSSKCVATFSKAHDGAE 288
HFV + SSDG+ SGS DG++++WD GVS++ +K +
Sbjct: 430 ----------SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK-----D 474
Query: 289 ISSLTFTRNGKYLLSSGKDSLVKLWE-LSSARCLIAYTGAG 328
+ S+ F+ + + ++S+ +D +KLW L + I+ G G
Sbjct: 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG 515
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 85/212 (40%), Gaps = 42/212 (19%)
Query: 108 AQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQ 167
A T H + AFS+D + + S D +IK+ + + E E
Sbjct: 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGE------ 514
Query: 168 GHPVIRTLYDHIEEVTCLEFHPSA--PILASGSKDKTVKMFDYSKSSVRKAHKTIQESTF 225
H + V+C+ F P+ P + S S DKTVK+++ S +R + +
Sbjct: 515 ---------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST--LAGHTGY 563
Query: 226 VRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHD 285
V ++ P DG + SG KDG + +WD K + +
Sbjct: 564 VSTVAVSP-------------------DGSLCASGGKDGVVLLWDLAEGKKLYSLEA--- 601
Query: 286 GAEISSLTFTRNGKYLLSSGKDSLVKLWELSS 317
+ I +L F+ N +Y L + + +K+W+L S
Sbjct: 602 NSVIHALCFSPN-RYWLCAATEHGIKIWDLES 632
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 48/213 (22%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
+T H S DGQ +GS D +++ D+ ++ R
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS------------------TRR 467
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFD------YSKSSVRKAHKTIQESTFVRC 228
H ++V + F + S S+D+T+K+++ Y+ S + H+ +V C
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRD-----WVSC 522
Query: 229 LSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAE 288
+ F P ++ S S D +K+W+ + K +T + H G
Sbjct: 523 VRFSP-----------------NTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTG-Y 563
Query: 289 ISSLTFTRNGKYLLSSGKDSLVKLWELSSARCL 321
+S++ + +G S GKD +V LW+L+ + L
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 84/211 (39%), Gaps = 46/211 (21%)
Query: 126 AFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCL 185
A S +G + S D S+++ ++ QN Q + + H ++V +
Sbjct: 74 ALSNNGNFAVSASWDHSLRLWNL--------------QNGQCQYKFL----GHTKDVLSV 115
Query: 186 EFHPSAPILASGSKDKTVKMFDYSKSSV----RKAHKTIQESTFVRCLSFHPCGDYMVVG 241
F P + SG +D +++++ + R AH + +V C+ F P
Sbjct: 116 AFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAH-----TDWVSCVRFSP-------- 162
Query: 242 TDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYL 301
S D + SG D +K+WD + + V K H ++S+T + +G
Sbjct: 163 ---------SLDAPVIVSGGWDNLVKVWDLATGRLVTDL-KGHTN-YVTSVTVSPDGSLC 211
Query: 302 LSSGKDSLVKLWELSSARCLIAYTGAGSMGQ 332
SS KD + +LW+L+ L + Q
Sbjct: 212 ASSDKDGVARLWDLTKGEALSEMAAGAPINQ 242
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 287 AEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
A +S + + NG + +S+ D ++LW L + +C + G
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLG 107
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 78/186 (41%), Gaps = 49/186 (26%)
Query: 96 FESDVDPSAPEPAQYET------AYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVD 149
F+S V A E + T A + H++ + A+S DG AT S D S+ I + D
Sbjct: 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137
Query: 150 RMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMF--- 206
ES E + I L +H ++V + +HPS +LAS S D TV+++
Sbjct: 138 --------ESGEE------YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 207 --DYSKSSVRKAHK-TIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKD 263
D+ +V H+ T+ S F + V RL CSGS D
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEG---------------VFRL--------CSGSDD 220
Query: 264 GDIKIW 269
+++W
Sbjct: 221 STVRVW 226
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 81/200 (40%), Gaps = 42/200 (21%)
Query: 123 RAGAFSIDGQLCATGSVDASIKILDV---DRMLAKSSMESSEPQNDQQGHPVIRTLYDHI 179
+ +F + ATGS D IK++ V D L E++ H
Sbjct: 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETA-----------------HK 58
Query: 180 EEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTF-VRCLSFHPCGDYM 238
+ + + + P +LA+GS D TV ++ +S+ R TF + L+ +
Sbjct: 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR---------TFEMDLLAIIEGHENE 109
Query: 239 VVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD----GVSSKCVATFSKAHDGAEISSLTF 294
V G +S+DG + S+D + IW+ G +C++ + ++ + +
Sbjct: 110 VKGV------AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH--SQDVKHVIW 161
Query: 295 TRNGKYLLSSGKDSLVKLWE 314
+ L SS D V++W+
Sbjct: 162 HPSEALLASSSYDDTVRIWK 181
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 44/205 (21%)
Query: 126 AFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCL 185
S DGQ +GS D ++++ D+ R H ++V +
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTT------------------GTTTRRFVGHTKDVLSV 134
Query: 186 EFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQE---STFVRCLSFHPCGDYMVVGT 242
F + SGS+DKT+K+++ ++ T+Q+ S +V C+ F P
Sbjct: 135 AFSSDNRQIVSGSRDKTIKLWN----TLGVCKYTVQDESHSEWVSCVRFSP--------- 181
Query: 243 DHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLL 302
+S I S D +K+W+ + K + T H G ++++T + +G
Sbjct: 182 --------NSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIGHTGY-LNTVTVSPDGSLCA 231
Query: 303 SSGKDSLVKLWELSSARCLIAYTGA 327
S GKD LW+L+ + L G
Sbjct: 232 SGGKDGQAMLWDLNEGKHLYTLDGG 256
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 51/236 (21%)
Query: 112 TAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPV 171
T H + AFS D + +GS D +IK+ + + + + S
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES----------- 169
Query: 172 IRTLYDHIEEVTCLEFHP--SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCL 229
H E V+C+ F P S PI+ S DK VK+++ + ++ H I + ++ +
Sbjct: 170 ------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH--IGHTGYLNTV 221
Query: 230 SFHPCGDYMVVG-TDHFVL--------RLYSSDG------------RIYCSGSKDGDIKI 268
+ P G G D + LY+ DG R + + IKI
Sbjct: 222 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKI 281
Query: 269 WD--------GVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELS 316
WD + + ++T SKA + + +SL ++ +G+ L + D+LV++W+++
Sbjct: 282 WDLEGKIIVDELKQEVISTSSKA-EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 32/200 (16%)
Query: 174 TLYDHIEEVTCLEFHPSAP-ILASGSKDKTVKMFDYSKSSVRKA--HKTIQ-ESTFVRCL 229
TL H VT + P P ++ S S+DKT+ M+ ++ + ++ S FV +
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 230 SFHPCGDYMVVGTDHFVLRLY-----------------------SSDGRIYCSGSKDGDI 266
G + + G+ LRL+ SSD R SGS+D I
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 267 KIWDGVSSKCVATFSKAHDGAEISSLTFTRNGK--YLLSSGKDSLVKLWELSSARCLIAY 324
K+W+ + C T +S + F+ N ++S G D LVK+W L A C +
Sbjct: 153 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL--ANCKLKT 209
Query: 325 TGAGSMGQQFELTLTVDADV 344
G G +T++ D +
Sbjct: 210 NHIGHTGYLNTVTVSPDGSL 229
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 44/205 (21%)
Query: 126 AFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCL 185
S DGQ +GS D ++++ D+ R H ++V +
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTT------------------GTTTRRFVGHTKDVLSV 111
Query: 186 EFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQE---STFVRCLSFHPCGDYMVVGT 242
F + SGS+DKT+K+++ ++ T+Q+ S +V C+ F P
Sbjct: 112 AFSSDNRQIVSGSRDKTIKLWN----TLGVCKYTVQDESHSEWVSCVRFSP--------- 158
Query: 243 DHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLL 302
+S I S D +K+W+ + K + T H G ++++T + +G
Sbjct: 159 --------NSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIGHTGY-LNTVTVSPDGSLCA 208
Query: 303 SSGKDSLVKLWELSSARCLIAYTGA 327
S GKD LW+L+ + L G
Sbjct: 209 SGGKDGQAMLWDLNEGKHLYTLDGG 233
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 51/236 (21%)
Query: 112 TAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPV 171
T H + AFS D + +GS D +IK+ + + + + S
Sbjct: 98 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES----------- 146
Query: 172 IRTLYDHIEEVTCLEFHP--SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCL 229
H E V+C+ F P S PI+ S DK VK+++ + ++ H I + ++ +
Sbjct: 147 ------HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH--IGHTGYLNTV 198
Query: 230 SFHPCGDYMVVG-TDHFVL--------RLYSSDG------------RIYCSGSKDGDIKI 268
+ P G G D + LY+ DG R + + IKI
Sbjct: 199 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKI 258
Query: 269 WD--------GVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELS 316
WD + + ++T SKA + + +SL ++ +G+ L + D+LV++W+++
Sbjct: 259 WDLEGKIIVDELKQEVISTSSKA-EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 32/200 (16%)
Query: 174 TLYDHIEEVTCLEFHPSAP-ILASGSKDKTVKMFDYSKSSVRKA--HKTIQ-ESTFVRCL 229
TL H VT + P P ++ S S+DKT+ M+ ++ + ++ S FV +
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 230 SFHPCGDYMVVGTDHFVLRLY-----------------------SSDGRIYCSGSKDGDI 266
G + + G+ LRL+ SSD R SGS+D I
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 267 KIWDGVSSKCVATFSKAHDGAEISSLTFTRNGK--YLLSSGKDSLVKLWELSSARCLIAY 324
K+W+ + C T +S + F+ N ++S G D LVK+W L A C +
Sbjct: 130 KLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL--ANCKLKT 186
Query: 325 TGAGSMGQQFELTLTVDADV 344
G G +T++ D +
Sbjct: 187 NHIGHTGYLNTVTVSPDGSL 206
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 41/163 (25%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
+ +H+ AFS D + AT SVD +KI N G ++ T
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW-----------------NSMTG-ELVHT 700
Query: 175 LYDHIEEVTCLEFHPSAP--ILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
+H E+V C F S+ +LA+GS D +K++D ++ R + F S +
Sbjct: 701 YDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRN-------TMFGHTNSVN 753
Query: 233 PCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSK 275
C +S D ++ S S DG +K+WD S+
Sbjct: 754 HCR--------------FSPDDKLLASCSADGTLKLWDATSAN 782
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLL--SSGKD 307
+S+D R + S D +KIW+ ++ + V T+ + + +++ FT + +LL + D
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSE--QVNCCHFTNSSHHLLLATGSSD 728
Query: 308 SLVKLWELSSARC 320
+KLW+L+ C
Sbjct: 729 CFLKLWDLNQKEC 741
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 30/167 (17%)
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDY 237
H+ V + F P + S D+T+++++ K A QE V F +
Sbjct: 887 HLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVV----FQE-NEV 941
Query: 238 MVVGTDHFVLRL-----------YSSDGRIYCS-----------GSKDGDIKIWDGVSSK 275
MV+ DH + RL Y ++ ++ C G ++G I+I + V+++
Sbjct: 942 MVLAVDH-IRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 276 CVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLI 322
S+ + + FT + K L+SS D+ +++W +C+
Sbjct: 1001 IFQ--SRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF 1045
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 44/217 (20%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSS-MESSEPQNDQQGHPVIRTLY 176
H S FS DG T S D +I++ + ++ S+ M E Q + V+
Sbjct: 887 HLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAV 946
Query: 177 DHIE------------------EVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHK 218
DHI +V+C P +A G ++ +++ + + + ++
Sbjct: 947 DHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSR- 1005
Query: 219 TIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVA 278
Q V + F ++D + S S D +I++W+ KC+
Sbjct: 1006 -FQHKKTVWHIQF-------------------TADEKTLISSSDDAEIQVWNWQLDKCI- 1044
Query: 279 TFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWEL 315
F + H + +N + LLS D VK+W +
Sbjct: 1045 -FLRGHQET-VKDFRLLKNSR-LLSWSFDGTVKVWNI 1078
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 29/134 (21%)
Query: 191 APILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLY 250
A +S S DKT K++ + + H+ + VRC +F
Sbjct: 1103 ATKFSSTSADKTAKIWSFD--LLLPLHELRGHNGCVRCSAF------------------- 1141
Query: 251 SSDGRIYCSGSKDGDIKIWDGVSSKCV---ATFSK---AHDGAEISSLTFTRNGKYLLSS 304
S D + +G +G+I+IW+ + + + A S+ A G ++ L F+ +GK L+S+
Sbjct: 1142 SVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA 1201
Query: 305 GKDSLVKLWELSSA 318
G +K W + +
Sbjct: 1202 G--GYIKWWNVVTG 1213
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDV 148
H R AFS+D L ATG + I+I +V
Sbjct: 1132 HNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 39/185 (21%)
Query: 130 DGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHP 189
D +L +G+ DAS K+ DV + + +T H ++ + F P
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCR------------------QTFTGHESDINAICFFP 236
Query: 190 SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRL 249
+ A+GS D T ++FD +R + + S D ++ G
Sbjct: 237 NGNAFATGSDDATCRLFD-----LRADQELMTYSH-----------DNIICGITSVS--- 277
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
+S GR+ +G D + +WD + + + HD +S L T +G + + DS
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDN-RVSCLGVTDDGMAVATGSWDSF 335
Query: 310 VKLWE 314
+K+W
Sbjct: 336 LKIWN 340
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 30/180 (16%)
Query: 173 RTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
RTL H+ ++ + + + +L S S+D + ++D + K H S++V ++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTCAYA 106
Query: 233 PCGDYMVVGTDHFVLRLYS----------------SDGRIYC----------SGSKDGDI 266
P G+Y+ G + +Y+ G + C + S D
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166
Query: 267 KIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+WD + + T H G ++ SL+ + + +S D+ KLW++ C +TG
Sbjct: 167 ALWD-IETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 22/192 (11%)
Query: 123 RAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEV 182
R G + +L + + LD D + SS +++ D + T H +V
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 183 TCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGT 242
L P + SG+ D + K++D + R+ T ES + + F P G+ G+
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESD-INAICFFPNGNAFATGS 245
Query: 243 DHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLL 302
D RL+ D++ + + + T+S + I+S++F+++G+ LL
Sbjct: 246 DDATCRLF--------------DLR-----ADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 303 SSGKDSLVKLWE 314
+ D +W+
Sbjct: 287 AGYDDFNCNVWD 298
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 43/158 (27%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL 175
T H+S A F +G ATGS DA+ ++ D+ + DQ+
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDL--------------RADQE-----LMT 263
Query: 176 YDH---IEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
Y H I +T + F S +L +G D ++D K+ +A V CL
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGV- 320
Query: 233 PCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
+ DG +GS D +KIW+
Sbjct: 321 ------------------TDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 39/185 (21%)
Query: 130 DGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHP 189
D +L +G+ DAS K+ DV + + +T H ++ + F P
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCR------------------QTFTGHESDINAICFFP 236
Query: 190 SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRL 249
+ A+GS D T ++FD +R + + S D ++ G
Sbjct: 237 NGNAFATGSDDATCRLFD-----LRADQELMTYSH-----------DNIICGITSVS--- 277
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
+S GR+ +G D + +WD + + + HD +S L T +G + + DS
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDN-RVSCLGVTDDGMAVATGSWDSF 335
Query: 310 VKLWE 314
+K+W
Sbjct: 336 LKIWN 340
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 30/180 (16%)
Query: 173 RTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
RTL H+ ++ + + + +L S S+D + ++D + K H S++V ++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTCAYA 106
Query: 233 PCGDYMVVGTDHFVLRLYS----------------SDGRIYC----------SGSKDGDI 266
P G+Y+ G + +Y+ G + C + S D
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166
Query: 267 KIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+WD + + T H G ++ SL+ + + +S D+ KLW++ C +TG
Sbjct: 167 ALWD-IETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 80/192 (41%), Gaps = 22/192 (11%)
Query: 123 RAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEV 182
R G + +L + + LD D + SS +++ D + T H +V
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 183 TCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGT 242
L P + SG+ D + K++D + R+ T ES + + F P G+ G+
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESD-INAICFFPNGNAFATGS 245
Query: 243 DHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLL 302
D RL+ D++ + + + T+S + I+S++F+++G+ LL
Sbjct: 246 DDATCRLF--------------DLR-----ADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 303 SSGKDSLVKLWE 314
+ D +W+
Sbjct: 287 AGYDDFNCNVWD 298
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 43/158 (27%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL 175
T H+S A F +G ATGS DA+ ++ D+ + DQ+
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDL--------------RADQE-----LMT 263
Query: 176 YDH---IEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
Y H I +T + F S +L +G D ++D K+ +A V CL
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGV- 320
Query: 233 PCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
+ DG +GS D +KIW+
Sbjct: 321 ------------------TDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 39/185 (21%)
Query: 130 DGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHP 189
D +L +G+ DAS K+ DV + + +T H ++ + F P
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCR------------------QTFTGHESDINAICFFP 236
Query: 190 SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRL 249
+ A+GS D T ++FD +R + + S D ++ G
Sbjct: 237 NGNAFATGSDDATCRLFD-----LRADQELMTYSH-----------DNIICGITSVS--- 277
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
+S GR+ +G D + +WD + + + HD +S L T +G + + DS
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDN-RVSCLGVTDDGMAVATGSWDSF 335
Query: 310 VKLWE 314
+K+W
Sbjct: 336 LKIWN 340
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 30/180 (16%)
Query: 173 RTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
RTL H+ ++ + + + +L S S+D + ++D + K H S++V ++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTCAYA 106
Query: 233 PCGDYMVVGTDHFVLRLYS----------------SDGRIYC----------SGSKDGDI 266
P G+Y+ G + +Y+ G + C + S D
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166
Query: 267 KIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+WD + + T H G ++ SL+ + + +S D+ KLW++ C +TG
Sbjct: 167 ALWD-IETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 22/192 (11%)
Query: 123 RAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEV 182
R G + +L + + LD D + SS +++ D + T H +V
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 183 TCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGT 242
L P + SG+ D + K++D + R+ T ES + + F P
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESD-INAICFFP--------- 236
Query: 243 DHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLL 302
+G + +GS D +++D + + + T+S + I+S++F+++G+ LL
Sbjct: 237 ----------NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 303 SSGKDSLVKLWE 314
+ D +W+
Sbjct: 287 AGYDDFNCNVWD 298
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 43/158 (27%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL 175
T H+S A F +G ATGS DA+ ++ D+ + DQ+
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDL--------------RADQE-----LMT 263
Query: 176 YDH---IEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
Y H I +T + F S +L +G D ++D K+ +A V CL
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGV- 320
Query: 233 PCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
+ DG +GS D +KIW+
Sbjct: 321 ------------------TDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 39/185 (21%)
Query: 130 DGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHP 189
D +L +G+ DAS K+ DV + + +T H ++ + F P
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMCR------------------QTFTGHESDINAICFFP 247
Query: 190 SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRL 249
+ A+GS D T ++FD +R + + S D ++ G
Sbjct: 248 NGNAFATGSDDATCRLFD-----LRADQELMTYSH-----------DNIICGITSVS--- 288
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
+S GR+ +G D + +WD + + + HD +S L T +G + + DS
Sbjct: 289 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDN-RVSCLGVTDDGMAVATGSWDSF 346
Query: 310 VKLWE 314
+K+W
Sbjct: 347 LKIWN 351
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 30/180 (16%)
Query: 173 RTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
RTL H+ ++ + + + +L S S+D + ++D + K H S++V ++
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTCAYA 117
Query: 233 PCGDYMVVGTDHFVLRLYS----------------SDGRIYC----------SGSKDGDI 266
P G+Y+ G + +Y+ G + C + S D
Sbjct: 118 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 177
Query: 267 KIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+WD + + T H G ++ SL+ + + +S D+ KLW++ C +TG
Sbjct: 178 ALWD-IETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 235
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 22/192 (11%)
Query: 123 RAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEV 182
R G + +L + + LD D + SS +++ D + T H +V
Sbjct: 140 REGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 198
Query: 183 TCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGT 242
L P + SG+ D + K++D + R+ T ES + + F P
Sbjct: 199 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESD-INAICFFP--------- 247
Query: 243 DHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLL 302
+G + +GS D +++D + + + T+S + I+S++F+++G+ LL
Sbjct: 248 ----------NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 297
Query: 303 SSGKDSLVKLWE 314
+ D +W+
Sbjct: 298 AGYDDFNCNVWD 309
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 43/158 (27%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL 175
T H+S A F +G ATGS DA+ ++ D+ + DQ+
Sbjct: 234 TGHESDINAICFFPNGNAFATGSDDATCRLFDL--------------RADQE-----LMT 274
Query: 176 YDH---IEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
Y H I +T + F S +L +G D ++D K+ +A V CL
Sbjct: 275 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGV- 331
Query: 233 PCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
+ DG +GS D +KIW+
Sbjct: 332 ------------------TDDGMAVATGSWDSFLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 39/185 (21%)
Query: 130 DGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHP 189
D +L +G+ DAS K+ DV + + +T H ++ + F P
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCR------------------QTFTGHESDINAICFFP 236
Query: 190 SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRL 249
+ A+GS D T ++FD +R + + S D ++ G
Sbjct: 237 NGNAFATGSDDATCRLFD-----LRADQELMTYSH-----------DNIICGITSVS--- 277
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
+S GR+ +G D + +WD + + + HD +S L T +G + + DS
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDN-RVSCLGVTDDGMAVATGSWDSF 335
Query: 310 VKLWE 314
+K+W
Sbjct: 336 LKIWN 340
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 30/180 (16%)
Query: 173 RTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
RTL H+ ++ + + + +L S S+D + ++D + K H S++V ++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTCAYA 106
Query: 233 PCGDYMVVGTDHFVLRLYS----------------SDGRIYC----------SGSKDGDI 266
P G+Y+ G + +Y+ G + C + S D
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166
Query: 267 KIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+WD + + T H G ++ SL+ + + +S D+ KLW++ C +TG
Sbjct: 167 ALWD-IETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 22/192 (11%)
Query: 123 RAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEV 182
R G + +L + + LD D + SS +++ D + T H +V
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 183 TCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGT 242
L P + SG+ D + K++D + R+ T ES + + F P
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESD-INAICFFP--------- 236
Query: 243 DHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLL 302
+G + +GS D +++D + + + T+S + I+S++F+++G+ LL
Sbjct: 237 ----------NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 303 SSGKDSLVKLWE 314
+ D +W+
Sbjct: 287 AGYDDFNCNVWD 298
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 43/158 (27%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL 175
T H+S A F +G ATGS DA+ ++ D+ + DQ+
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDL--------------RADQE-----LMT 263
Query: 176 YDH---IEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
Y H I +T + F S +L +G D ++D K+ +A V CL
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGV- 320
Query: 233 PCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
+ DG +GS D +KIW+
Sbjct: 321 ------------------TDDGMAVATGSWDSFLKIWN 340
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 96/254 (37%), Gaps = 59/254 (23%)
Query: 103 SAPEPAQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDR---MLAKSSMES 159
+ P + +T T H S G CA+G V +++I D + +L +
Sbjct: 43 TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF 102
Query: 160 SEPQND------------------QQGHPVI-------RTLYDHIEEVTCLEFHPSAPI- 193
S P D + GH + L + ++F PS P
Sbjct: 103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR 162
Query: 194 LASGSKDKTVKMFDYSKSSVRKAHKTIQEST-FVRCLSFHPCGDYMVVGTDHFVLRLYSS 252
+ SGS D TV +F+ K T E T FV + ++P
Sbjct: 163 IISGSDDNTVAIFE---GPPFKFKSTFGEHTKFVHSVRYNP------------------- 200
Query: 253 DGRIYCSGSKDGDIKIWDGVSSKCVATF------SKAHDGAEISSLTFTRNGKYLLSSGK 306
DG ++ S DG I +++GV F + AH G+ + LT++ +G + S+
Sbjct: 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS-VFGLTWSPDGTKIASASA 259
Query: 307 DSLVKLWELSSARC 320
D +K+W +++ +
Sbjct: 260 DKTIKIWNVATLKV 273
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 49/205 (23%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
S+ S C A S D Q A G D+ + + + S SE ++T+
Sbjct: 448 SYNSSCVA--LSNDKQFVAVGGQDSKVHVYKL------SGASVSE----------VKTIV 489
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYS-KSSVRKAHKTIQESTF----VRCLSF 231
H E+T + F + L + D++ K+ YS ++ AH TF V C+S+
Sbjct: 490 -HPAEITSVAFSNNGAFLVA--TDQSRKVIPYSVANNFELAHT--NSWTFHTAKVACVSW 544
Query: 232 HPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD-GVSSKCVATFSKAHDGAEIS 290
P D +GS D + +W+ S AH + ++
Sbjct: 545 SP-------------------DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN 585
Query: 291 SLTFTRNGKYLLSSGKDSLVKLWEL 315
S+ + N ++S+G+DS +K W +
Sbjct: 586 SVIW-LNETTIVSAGQDSNIKFWNV 609
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 25/147 (17%)
Query: 170 PVIRTLYDHIEEV-TCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRC 228
P TL H+ V TCL+F + I +G+ DK ++++D S+ K F+
Sbjct: 112 PQRTTLRGHMTSVITCLQFEDNYVI--TGADDKMIRVYD----SINKK--------FLLQ 157
Query: 229 LSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAE 288
LS H G V L + G I SGS D +++WD C F +
Sbjct: 158 LSGHDGG----------VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 207
Query: 289 ISSLTFTRNGKYLLSSGKDSLVKLWEL 315
+ +N KY+++ +D+ + +W+L
Sbjct: 208 CLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 81/206 (39%), Gaps = 30/206 (14%)
Query: 131 GQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEF--H 188
G + +GS D ++++ D+ + E H V CL+ +
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEG------------------HNSTVRCLDIVEY 214
Query: 189 PSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH-PCGDYMVVGT--DHF 245
+ + +GS+D T+ ++ K S H + V FH P + VG H
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV----FHTPEENPYFVGVLRGHM 270
Query: 246 V-LRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSS 304
+R S G I SGS D + +WD KC+ S D I S + K +S+
Sbjct: 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIYDHERKRCISA 328
Query: 305 GKDSLVKLWELSSARCLIAYTGAGSM 330
D+ +++W+L + + G ++
Sbjct: 329 SMDTTIRIWDLENGELMYTLQGHTAL 354
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 45/214 (21%)
Query: 101 DPSAPEPAQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESS 160
D +AP P A +TS C A A S D ++C + D +I + D+
Sbjct: 125 DLAAPTPRI--KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL------------ 170
Query: 161 EPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTI 220
++R H + +C++ L +G D TV+ +D + + H
Sbjct: 171 ------HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224
Query: 221 QESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATF 280
+ + L + P G+++ VG + SS+ + D K + CV
Sbjct: 225 SQ---IFSLGYCPTGEWLAVGME-------SSNVEVLHVNKPD---KYQLHLHESCVL-- 269
Query: 281 SKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWE 314
SL F GK+ +S+GKD+L+ W
Sbjct: 270 ----------SLKFAYCGKWFVSTGKDNLLNAWR 293
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 34/179 (18%)
Query: 172 IRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYS----KSSVRKAHKTIQESTFVR 227
I TL +H E V + + +G K VK++D S KS V + + ++R
Sbjct: 45 INTL-NHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQL-DCLNRDNYIR 101
Query: 228 CLSFHPCGDYMVVGTDHFVLRLY-------------------------SSDGRIYCSGSK 262
P G ++VG + L ++ S D ++ S
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161
Query: 263 DGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCL 321
DG+I +WD + V F DGA S + + +G L + G D+ V+ W+L R L
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGA--SCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 81/204 (39%), Gaps = 32/204 (15%)
Query: 131 GQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEF--H 188
G + +GS D ++++ D+ + E H V CL+ +
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEG------------------HNSTVRCLDIVEY 214
Query: 189 PSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH-PCGDYMVVGT--DHF 245
+ + +GS+D T+ ++ K S H + V FH P + VG H
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV----FHTPEENPYFVGVLRGHX 270
Query: 246 V-LRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSS 304
+R S G I SGS D + +WD KC+ S D I S + K +S+
Sbjct: 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTD--RIYSTIYDHERKRCISA 328
Query: 305 GKDSLVKLWELSSARCLIAYTGAG 328
D+ +++W+L + + YT G
Sbjct: 329 SXDTTIRIWDLENGE--LXYTLQG 350
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 24/134 (17%)
Query: 182 VTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVG 241
+TCL+F + I +G+ DK ++++D S+ K F+ LS H G
Sbjct: 125 ITCLQFEDNYVI--TGADDKXIRVYD----SINKK--------FLLQLSGHDGG------ 164
Query: 242 TDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYL 301
V L + G I SGS D +++WD C F + + +N KY+
Sbjct: 165 ----VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 220
Query: 302 LSSGKDSLVKLWEL 315
++ +D+ + +W+L
Sbjct: 221 VTGSRDNTLHVWKL 234
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 39/185 (21%)
Query: 141 ASIKILDVD-RMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSK 199
A++ ++D D + + +S + + + +RTL H + CL++ ++ SGS
Sbjct: 257 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSS 314
Query: 200 DKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCS 259
D T++++D + + + +E VRC+ F D + S
Sbjct: 315 DNTIRLWDIECGACLRVLEGHEE--LVRCIRF---------------------DNKRIVS 351
Query: 260 GSKDGDIKIWDGVS---------SKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLV 310
G+ DG IK+WD V+ + C+ T + H G + L F + ++SS D +
Sbjct: 352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE-HSG-RVFRLQF--DEFQIVSSSHDDTI 407
Query: 311 KLWEL 315
+W+
Sbjct: 408 LIWDF 412
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 130 DGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHP 189
D ++ TGS D+++++ DV+ + E N TL H E V L F+
Sbjct: 182 DERVIITGSSDSTVRVWDVN---------TGEMLN---------TLIHHCEAVLHLRFNN 223
Query: 190 SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRL 249
++ + SKD+++ ++D + + + T R L H +V D +++
Sbjct: 224 G--MMVTCSKDRSIAVWDMASPT---------DITLRRVLVGHRAAVNVVDFDDKYIV-- 270
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
S S D IK+W+ + + V T + G I+ L + + ++S D+
Sbjct: 271 ---------SASGDRTIKVWNTSTCEFVRTLNGHKRG--IACLQY--RDRLVVSGSSDNT 317
Query: 310 VKLWELSSARCLIAYTG 326
++LW++ CL G
Sbjct: 318 IRLWDIECGACLRVLEG 334
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 29/136 (21%)
Query: 182 VTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVG 241
V CL++ + SG +D T+K++D K+++ + V CL +
Sbjct: 136 VYCLQYDDQK--IVSGLRDNTIKIWD--KNTLECKRILTGHTGSVLCLQY---------- 181
Query: 242 TDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYL 301
D R+ +GS D +++WD + + + T H + L F N +
Sbjct: 182 -----------DERVIITGSSDSTVRVWDVNTGEMLNTL--IHHCEAVLHLRF--NNGMM 226
Query: 302 LSSGKDSLVKLWELSS 317
++ KD + +W+++S
Sbjct: 227 VTCSKDRSIAVWDMAS 242
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 165 DQQGHPVIRTLYDHIEEVTCLEFHPS--APILASGSKDKTVKMFDYSKSSVRKAHKTIQE 222
D + ++++ + H +V CL+ PS SG DK ++D +A +T +
Sbjct: 182 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES 241
Query: 223 STFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSK 282
V + ++P GD + SGS D +++D + + VA +SK
Sbjct: 242 D--VNSVRYYPSGD-------------------AFASGSDDATCRLYDLRADREVAIYSK 280
Query: 283 AHDGAEISSLTFTRNGKYLLSSGKDSLVKLWEL 315
SS+ F+ +G+ L + D + +W++
Sbjct: 281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 25/129 (19%)
Query: 165 DQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFD---------YSKSSVRK 215
D + ++ H +V + ++PS ASGS D T +++D YSK S+
Sbjct: 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285
Query: 216 AHKTIQESTFVRCLSFHPCGDY--------------MVVGTDHFVLRL-YSSDGRIYCSG 260
++ S R L F DY ++ G ++ V L S DG +CSG
Sbjct: 286 GASSVDFSLSGRLL-FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSG 344
Query: 261 SKDGDIKIW 269
S D +++W
Sbjct: 345 SWDHTLRVW 353
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 35/183 (19%)
Query: 173 RTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
RTL H +V C+++ + S S+D V ++D + K H T+V ++
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD--SFTTNKEHAVTMPCTWVMACAYA 115
Query: 233 PCGDYMVVG-----------------------------TDHFVLRLYSSDGRIYCSGSKD 263
P G + G T++ +++ + S D
Sbjct: 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD 175
Query: 264 GDIKIWDGVSSKCVATFSKAHDGAEISSLTF--TRNGKYLLSSGKDSLVKLWELSSARCL 321
G +WD S + + +F H GA++ L + G +S G D +W++ S +C+
Sbjct: 176 GTCALWDVESGQLLQSF-HGH-GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV 233
Query: 322 IAY 324
A+
Sbjct: 234 QAF 236
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 43/190 (22%)
Query: 126 AFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCL 185
A+S DG+ A+G++D I I D+ ++ TL H + L
Sbjct: 171 AYSPDGKYLASGAIDGIINIFDI------------------ATGKLLHTLEGHAMPIRSL 212
Query: 186 EFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHF 245
F P + +L + S D +K++D +Q + LS H +
Sbjct: 213 TFSPDSQLLVTASDDGYIKIYD------------VQHANLAGTLSGHAS----------W 250
Query: 246 VLRL-YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSS 304
VL + + D + S S D +K+WD + CV TF D ++ + + NG ++S
Sbjct: 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSV 308
Query: 305 GKDSLVKLWE 314
G D + +++
Sbjct: 309 GDDQEIHIYD 318
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 24/114 (21%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDV------------------------DRMLA 153
H P R+ FS D QL T S D IKI DV D
Sbjct: 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFV 264
Query: 154 KSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFD 207
SS + S D + T +DH ++V ++++ + + S D+ + ++D
Sbjct: 265 SSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 69/181 (38%), Gaps = 45/181 (24%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
V H FS DGQ A+ D ++++ E+ E D + H
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA---------ETGEKLLDIKAHE---- 664
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
+EV C F +A+ S DK VK++D + + H + S V C F
Sbjct: 665 -----DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL--VHTYDEHSEQVNCCHFTNK 717
Query: 235 GDYMVV--GTDHFVLRLY-----------------------SSDGRIYCSGSKDGDIKIW 269
+++++ G++ F L+L+ S D + S S DG +++W
Sbjct: 718 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Query: 270 D 270
D
Sbjct: 778 D 778
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
+SSD + S D +KIWD + K V T+ + + T N L + D
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 310 VKLWELSSARC 320
+KLW+L+ C
Sbjct: 732 LKLWDLNQKEC 742
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 60/259 (23%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILD-VDRMLAKSSMESSEPQN-----DQQG 168
+ +H+ AFS D AT S D +KI D L + E SE N ++
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 169 HPVI--------------------RTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDY 208
H ++ T++ H V F P +LAS S D T++++D
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 209 SKSSVRKAHKTIQ-----------ESTFVRCLSFHPCGDYMVVGTDHFVLRL-YSSDGRI 256
++ RK+ + V+C S+ GD ++V + VL + G +
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 839
Query: 257 ------------YCSGSKDGDIKIWDGVSSKCVATFS-----KAHDG----AEISSLTFT 295
YC S + + +S CV ++ K D + + + F+
Sbjct: 840 AEIHTGHHSTIQYCDFSPYDHLAV-IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 898
Query: 296 RNGKYLLSSGKDSLVKLWE 314
+G L++ D +++WE
Sbjct: 899 PDGSSFLTASDDQTIRVWE 917
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 85/230 (36%), Gaps = 52/230 (22%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVD-----------------RMLAKSSMESS 160
HK R F+ DG+ + S D+ I++ + R+L S + S
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSW 1068
Query: 161 EPQNDQQGHPVI-----RTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRK 215
+ VI R H V A +S S DKT K++ + S
Sbjct: 1069 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS--P 1126
Query: 216 AHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIW---DGV 272
H+ + VRC +F S DG + +G +G+I+IW DG
Sbjct: 1127 LHELKGHNGCVRCSAF-------------------SLDGILLATGDDNGEIRIWNVSDGQ 1167
Query: 273 SSKCVATFS----KAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSA 318
A S A G ++ + F+ + K L+S+G +K W +++
Sbjct: 1168 LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1215
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 28/162 (17%)
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDY 237
H+ V + F P + S D+T+++++ K A QE V F +
Sbjct: 888 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV----FQE-NET 942
Query: 238 MVVGTDHFV-LRL---------YSSDGRIYCS-----------GSKDGDIKIWDGVSSKC 276
MV+ D+ L+L Y + ++ C G +DG IKI + +++
Sbjct: 943 MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR- 1001
Query: 277 VATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSA 318
V + H A + + FT +GK L+SS +DS++++W +
Sbjct: 1002 VFSSGVGHKKA-VRHIQFTADGKTLISSSEDSVIQVWNWQTG 1042
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 69/181 (38%), Gaps = 45/181 (24%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
V H FS DGQ A+ D ++++ E+ E D + H
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKA---------ETGEKLLDIKAHE---- 657
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
+EV C F +A+ S DK VK++D + + H + S V C F
Sbjct: 658 -----DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL--VHTYDEHSEQVNCCHFTNK 710
Query: 235 GDYMVV--GTDHFVLRLY-----------------------SSDGRIYCSGSKDGDIKIW 269
+++++ G++ F L+L+ S D + S S DG +++W
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Query: 270 D 270
D
Sbjct: 771 D 771
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
+SSD + S D +KIWD + K V T+ + + T N L + D
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 310 VKLWELSSARC 320
+KLW+L+ C
Sbjct: 725 LKLWDLNQKEC 735
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 60/259 (23%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILD-VDRMLAKSSMESSEPQN-----DQQG 168
+ +H+ AFS D AT S D +KI D L + E SE N ++
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 169 HPVI--------------------RTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDY 208
H ++ T++ H V F P +LAS S D T++++D
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 209 SKSSVRKAHKTIQ-----------ESTFVRCLSFHPCGDYMVVGTDHFVLRL-YSSDGRI 256
++ RK+ + V+C S+ GD ++V + VL + G +
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832
Query: 257 ------------YCSGSKDGDIKIWDGVSSKCVATFS-----KAHDG----AEISSLTFT 295
YC S + + +S CV ++ K D + + + F+
Sbjct: 833 AEIHTGHHSTIQYCDFSPYDHLAV-IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 891
Query: 296 RNGKYLLSSGKDSLVKLWE 314
+G L++ D +++WE
Sbjct: 892 PDGSSFLTASDDQTIRVWE 910
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 85/230 (36%), Gaps = 52/230 (22%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVD-----------------RMLAKSSMESS 160
HK R F+ DG+ + S D+ I++ + R+L S + S
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSW 1061
Query: 161 EPQNDQQGHPVI-----RTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRK 215
+ VI R H V A +S S DKT K++ + S
Sbjct: 1062 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS--P 1119
Query: 216 AHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIW---DGV 272
H+ + VRC +F S DG + +G +G+I+IW DG
Sbjct: 1120 LHELKGHNGCVRCSAF-------------------SLDGILLATGDDNGEIRIWNVSDGQ 1160
Query: 273 SSKCVATFS----KAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSA 318
A S A G ++ + F+ + K L+S+G +K W +++
Sbjct: 1161 LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 28/162 (17%)
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDY 237
H+ V + F P + S D+T+++++ K A QE V F +
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV----FQE-NET 935
Query: 238 MVVGTDHFV-LRL---------YSSDGRIYCS-----------GSKDGDIKIWDGVSSKC 276
MV+ D+ L+L Y + ++ C G +DG IKI + +++
Sbjct: 936 MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR- 994
Query: 277 VATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSA 318
V + H A + + FT +GK L+SS +DS++++W +
Sbjct: 995 VFSSGVGHKKA-VRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 33/158 (20%)
Query: 173 RTLYDHIEEVTCLEFHP-SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSF 231
T+ H EV CL F+P S ILA+GS DKTV ++D + K H SF
Sbjct: 273 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLH------------SF 319
Query: 232 HPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDG----- 286
D + F ++ + I S D + +WD + A DG
Sbjct: 320 ESHKDEI------FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 373
Query: 287 -------AEISSLTFTRNGKYLL-SSGKDSLVKLWELS 316
A+IS ++ N +++ S +D+++++W+++
Sbjct: 374 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 411
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 179 IEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTF-VRCLSFHPCGDY 237
+E+V H S + S + D+ + ++D ++ K T+ T V CLSF+P ++
Sbjct: 236 VEDVAWHLLHES--LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 293
Query: 238 MVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKC-VATFSKAHDGAEISSLTFT- 295
I +GS D + +WD + K + +F D EI + ++
Sbjct: 294 ------------------ILATGSADKTVALWDLRNLKLKLHSFESHKD--EIFQVQWSP 333
Query: 296 RNGKYLLSSGKDSLVKLWELS 316
N L SSG D + +W+LS
Sbjct: 334 HNETILASSGTDRRLHVWDLS 354
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 33/158 (20%)
Query: 173 RTLYDHIEEVTCLEFHP-SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSF 231
T+ H EV CL F+P S ILA+GS DKTV ++D + K H SF
Sbjct: 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLH------------SF 317
Query: 232 HPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDG----- 286
D + F ++ + I S D + +WD + A DG
Sbjct: 318 ESHKDEI------FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 371
Query: 287 -------AEISSLTFTRNGKYLL-SSGKDSLVKLWELS 316
A+IS ++ N +++ S +D+++++W+++
Sbjct: 372 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 179 IEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTF-VRCLSFHPCGDY 237
+E+V H S + S + D+ + ++D ++ K T+ T V CLSF+P ++
Sbjct: 234 VEDVAWHLLHES--LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291
Query: 238 MVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKC-VATFSKAHDGAEISSLTFT- 295
I +GS D + +WD + K + +F D EI + ++
Sbjct: 292 ------------------ILATGSADKTVALWDLRNLKLKLHSFESHKD--EIFQVQWSP 331
Query: 296 RNGKYLLSSGKDSLVKLWELS 316
N L SSG D + +W+LS
Sbjct: 332 HNETILASSGTDRRLHVWDLS 352
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 256 IYCSGSKDGDIKIWD---------------GVSSKCVATFSKAHDGAEISSLTFTRNGKY 300
I + S D +K+WD G S+ V + + AH+G +++ L FT +G +
Sbjct: 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG-KVNGLCFTSDGLH 259
Query: 301 LLSSGKDSLVKLWELSSARCLIAYTGAGSMGQQFELTLTV 340
LL+ G D+ ++LW S+ + G + L TV
Sbjct: 260 LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV 299
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 33/158 (20%)
Query: 173 RTLYDHIEEVTCLEFHP-SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSF 231
T+ H EV CL F+P S ILA+GS DKTV ++D + K H SF
Sbjct: 275 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLH------------SF 321
Query: 232 HPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDG----- 286
D + F ++ + I S D + +WD + A DG
Sbjct: 322 ESHKDEI------FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 375
Query: 287 -------AEISSLTFTRNGKYLLSS-GKDSLVKLWELS 316
A+IS ++ N +++ S +D+++++W+++
Sbjct: 376 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 413
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 179 IEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTF-VRCLSFHPCGDY 237
+E+V H S + S + D+ + ++D ++ K T+ T V CLSF+P ++
Sbjct: 238 VEDVAWHLLHES--LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 295
Query: 238 MVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKC-VATFSKAHDGAEISSLTFT- 295
I +GS D + +WD + K + +F D EI + ++
Sbjct: 296 ------------------ILATGSADKTVALWDLRNLKLKLHSFESHKD--EIFQVQWSP 335
Query: 296 RNGKYLLSSGKDSLVKLWELS 316
N L SSG D + +W+LS
Sbjct: 336 HNETILASSGTDRRLHVWDLS 356
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Query: 173 RTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
+ H EV + F P + S ++ +K+++ + + S +V C+ +
Sbjct: 112 KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171
Query: 233 PCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSL 292
P ++ + + V + S DG +K+W+ + + TF KAH+ + ++ L
Sbjct: 172 P-----IMKSANKVQPF----APYFASVGWDGRLKVWN-TNFQIRYTF-KAHE-SNVNHL 219
Query: 293 TFTRNGKYLLSSGKDSLVKLWEL 315
+ + NGKY+ + GKD + +W++
Sbjct: 220 SISPNGKYIATGGKDKKLLIWDI 242
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 18/126 (14%)
Query: 191 APILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLY 250
+P+L SGS+DKTV ++ K ++ Q F + G +HFV L
Sbjct: 39 SPVLISGSRDKTVMIW--------KLYEEEQNGYF-------GIPHKALTGHNHFVSDLA 83
Query: 251 SSDGRIYC-SGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
S + S S D +++WD + F H +E+ S+ F+ + + +LS+G +
Sbjct: 84 LSQENCFAISSSWDKTLRLWDLRTGTTYKRFV-GHQ-SEVYSVAFSPDNRQILSAGAERE 141
Query: 310 VKLWEL 315
+KLW +
Sbjct: 142 IKLWNI 147
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 174 TLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHP 233
T H V L P+ +A+G KDK + ++D ++ + + + ++F+P
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI--LNLTYPQREFDAGSTINQIAFNP 265
Query: 234 CGDYMVVGTDHFV 246
++ VGTD V
Sbjct: 266 KLQWVAVGTDQGV 278
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 251 SSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAE-----ISSLTFTRNGKYLLSSG 305
+ D + SGS+D + IW + F H +S L ++ + +SS
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 306 KDSLVKLWELSSARCLIAYTG 326
D ++LW+L + + G
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVG 116
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 33/153 (21%)
Query: 178 HIEEVTCLEFHP-SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
H EV CL F+P S ILA+GS DKTV ++D + ++ SF D
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDL-------------RNLKLKLHSFESHKD 318
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDG---------- 286
+ F ++ + I S D + +WD + A DG
Sbjct: 319 EI------FQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGG 372
Query: 287 --AEISSLTFTRNGKYLL-SSGKDSLVKLWELS 316
A+IS ++ N +++ S +D+++++W+++
Sbjct: 373 HTAKISDFSWNPNEPWVICSVSEDNIMQVWQMA 405
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 25/141 (17%)
Query: 179 IEEVTCLEFHPSAPILASGSKDKTVKMFD-YSKSSVRKAHKTIQESTFVRCLSFHPCGDY 237
+E+V+ H S + S + D+ + ++D S ++ + +H + V CLSF+P ++
Sbjct: 230 VEDVSWHLLHES--LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF 287
Query: 238 MVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKC-VATFSKAHDGAEISSLTFT- 295
I +GS D + +WD + K + +F D EI + ++
Sbjct: 288 ------------------ILATGSADKTVALWDLRNLKLKLHSFESHKD--EIFQVQWSP 327
Query: 296 RNGKYLLSSGKDSLVKLWELS 316
N L SSG D + +W+LS
Sbjct: 328 HNETILASSGTDRRLNVWDLS 348
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 200 DKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLY--------- 250
D +V ++ S + + + Q ++ +++ G+Y+ VGT ++L+
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 251 ------------SSDGRIYCSGSKDGDIKIWD-GVSSKCVATFSKAHDGAEISSLTFTRN 297
S + I SGS+ G I D V+ VAT S E+ L + +
Sbjct: 195 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG--HSQEVCGLRWAPD 252
Query: 298 GKYLLSSGKDSLVKLW 313
G++L S G D+LV +W
Sbjct: 253 GRHLASGGNDNLVNVW 268
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 263 DGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCL 321
D + +W S + G ISS+ + + G YL + V+LW++ + L
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 193
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 200 DKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLY--------- 250
D +V ++ S + + + Q ++ +++ G+Y+ VGT ++L+
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 251 ------------SSDGRIYCSGSKDGDIKIWD-GVSSKCVATFSKAHDGAEISSLTFTRN 297
S + I SGS+ G I D V+ VAT S E+ L + +
Sbjct: 184 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG--HSQEVCGLRWAPD 241
Query: 298 GKYLLSSGKDSLVKLW 313
G++L S G D+LV +W
Sbjct: 242 GRHLASGGNDNLVNVW 257
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 263 DGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCL 321
D + +W S + G ISS+ + + G YL + V+LW++ + L
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182
>pdb|2XZ2|A Chain A, Crystal Structure Of Cstf-50 Homodimerization Domain
Length = 66
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 4 QNEQKSSAEVLRRQEALYRLIISQLYYDGHHPMAITLQSSCNVVEPCPPSDRLSQLVHIG 63
++E + +++ +E LYRL+ISQL YDG A+ L S + C PS+RL ++ G
Sbjct: 3 RDEILDPSNLVKNREILYRLMISQLMYDGLEKFAMEL-SMLVKADQCAPSERLLHVMIAG 61
Query: 64 L 64
+
Sbjct: 62 M 62
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 34/166 (20%)
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSK-------------SSVRKAHKTIQEST 224
H +V ++ A ++ SGS+DKT+K++ S VR +
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 225 FVRCLSFHPCGDYMV--------------VGTDHFVLRLYSS-DGRIYCSGSKDGDIKIW 269
V +S D MV +G + + L +S DG + S KDG+I +W
Sbjct: 166 SVTIIS--AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 270 DGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWEL 315
+ + K + T S A D E+ SL F+ N +Y L++ + +K++ L
Sbjct: 224 NLAAKKAMYTLS-AQD--EVFSLAFSPN-RYWLAAATATGIKVFSL 265
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 30/159 (18%)
Query: 164 NDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQES 223
+DQ+ +R+ H V S S DKT++++D +
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE----------- 98
Query: 224 TFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKA 283
T+ R + D M V D + SGS+D IK+W + +C+AT
Sbjct: 99 TYQRFVGHKS--DVMSVDIDK--------KASMIISGSRDKTIKVWT-IKGQCLATLLGH 147
Query: 284 HDGAEISSLTFTRNGK------YLLSSGKDSLVKLWELS 316
+D +S + N K ++S+G D +VK W L+
Sbjct: 148 ND--WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 34/166 (20%)
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSK-------------SSVRKAHKTIQEST 224
H +V ++ A ++ SGS+DKT+K++ S VR +
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 225 FVRCLSFHPCGDYMV--------------VGTDHFVLRLYSS-DGRIYCSGSKDGDIKIW 269
V +S D MV +G + + L +S DG + S KDG+I +W
Sbjct: 166 SVTIIS--AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 270 DGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWEL 315
+ + K + T S A D E+ SL F+ N +Y L++ + +K++ L
Sbjct: 224 NLAAKKAMYTLS-AQD--EVFSLAFSPN-RYWLAAATATGIKVFSL 265
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 30/172 (17%)
Query: 164 NDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQES 223
+DQ+ +R+ H V S S DKT++++D +
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE----------- 98
Query: 224 TFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKA 283
T+ R + D M V D + SGS+D IK+W + +C+AT
Sbjct: 99 TYQRFVGHKS--DVMSVDIDK--------KASMIISGSRDKTIKVWT-IKGQCLATLLGH 147
Query: 284 HDGAEISSLTFTRNGK------YLLSSGKDSLVKLWELSSARCLIAYTGAGS 329
+D +S + N K ++S+G D +VK W L+ + + G S
Sbjct: 148 ND--WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 34/166 (20%)
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSK-------------SSVRKAHKTIQEST 224
H +V ++ A ++ SGS+DKT+K++ S VR +
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 225 FVRCLSFHPCGDYMV--------------VGTDHFVLRLYSS-DGRIYCSGSKDGDIKIW 269
V +S D MV +G + + L +S DG + S KDG+I +W
Sbjct: 166 SVTIIS--AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 270 DGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWEL 315
+ + K + T S A D E+ SL F+ N +Y L++ + +K++ L
Sbjct: 224 NLAAKKAMYTLS-AQD--EVFSLAFSPN-RYWLAAATATGIKVFSL 265
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 30/172 (17%)
Query: 164 NDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQES 223
+DQ+ +R+ H V S S DKT++++D +
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE----------- 98
Query: 224 TFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKA 283
T+ R + D M V D + SGS+D IK+W + +C+AT
Sbjct: 99 TYQRFVGHKS--DVMSVDIDK--------KASMIISGSRDKTIKVWT-IKGQCLATLLGH 147
Query: 284 HDGAEISSLTFTRNGK------YLLSSGKDSLVKLWELSSARCLIAYTGAGS 329
+D +S + N K ++S+G D +VK W L+ + + G S
Sbjct: 148 ND--WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 34/166 (20%)
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSK-------------SSVRKAHKTIQEST 224
H +V ++ A ++ SGS+DKT+K++ S VR +
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 225 FVRCLSFHPCGDYMV--------------VGTDHFVLRLYSS-DGRIYCSGSKDGDIKIW 269
V +S D MV +G + + L +S DG + S KDG+I +W
Sbjct: 166 SVTIIS--AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 270 DGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWEL 315
+ + K + T S A D E+ SL F+ N +Y L++ + +K++ L
Sbjct: 224 NLAAKKAMYTLS-AQD--EVFSLAFSPN-RYWLAAATATGIKVFSL 265
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 30/172 (17%)
Query: 164 NDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQES 223
+DQ+ +R+ H V S S DKT++++D +
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE----------- 98
Query: 224 TFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKA 283
T+ R + D M V D + SGS+D IK+W + +C+AT
Sbjct: 99 TYQRFVGHKS--DVMSVDIDK--------KASMIISGSRDKTIKVWT-IKGQCLATLLGH 147
Query: 284 HDGAEISSLTFTRNGK------YLLSSGKDSLVKLWELSSARCLIAYTGAGS 329
+D +S + N K ++S+G D +VK W L+ + + G S
Sbjct: 148 ND--WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 34/166 (20%)
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSK-------------SSVRKAHKTIQEST 224
H +V ++ A ++ SGS+DKT+K++ S VR +
Sbjct: 100 HKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD 159
Query: 225 FVRCLSFHPCGDYMV--------------VGTDHFVLRLYSS-DGRIYCSGSKDGDIKIW 269
V +S D MV +G + + L +S DG + S KDG+I +W
Sbjct: 160 SVTIIS--AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Query: 270 DGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWEL 315
+ + K + T S A D E+ SL F+ N +Y L++ + +K++ L
Sbjct: 218 NLAAKKAMYTLS-AQD--EVFSLAFSPN-RYWLAAATATGIKVFSL 259
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 30/172 (17%)
Query: 164 NDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQES 223
+DQ+ +R+ H V S S DKT++++D +
Sbjct: 44 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE----------- 92
Query: 224 TFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKA 283
T+ R + D M V D + SGS+D IK+W + +C+AT
Sbjct: 93 TYQRFVGHKS--DVMSVDIDK--------KASMIISGSRDKTIKVWT-IKGQCLATLLGH 141
Query: 284 HDGAEISSLTFTRNGK------YLLSSGKDSLVKLWELSSARCLIAYTGAGS 329
+D +S + N K ++S+G D +VK W L+ + + G S
Sbjct: 142 ND--WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 191
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 33/153 (21%)
Query: 178 HIEEVTCLEFHP-SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
H EV CL F+P S ILA+GS DKTV ++D ++ +F D
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-------------LKLHTFESHKD 320
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDG---------- 286
+ F + + I S D + +WD + A DG
Sbjct: 321 EI------FQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 287 --AEISSLTFTRNGKYLLSS-GKDSLVKLWELS 316
A+IS ++ N +++ S +D+++++W+++
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIMQIWQMA 407
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 179 IEEVTCLEFHPSAPILASGSKDKTVKMFD-YSKSSVRKAHKTIQESTFVRCLSFHPCGDY 237
+E+V H S + S + D+ + ++D S ++ + +H + V CLSF+P ++
Sbjct: 232 VEDVAWHLLHES--LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 238 MVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKC-VATFSKAHDGAEISSLTFT- 295
I +GS D + +WD + K + TF D EI + ++
Sbjct: 290 ------------------ILATGSADKTVALWDLRNLKLKLHTFESHKD--EIFQVHWSP 329
Query: 296 RNGKYLLSSGKDSLVKLWELS 316
N L SSG D + +W+LS
Sbjct: 330 HNETILASSGTDRRLNVWDLS 350
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 24/136 (17%)
Query: 200 DKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLY--------- 250
D +V ++ S + + + Q ++ +++ G+Y+ VGT ++L+
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 251 ------------SSDGRIYCSGSKDGDIKIWD-GVSSKCVATFSKAHDGAEISSLTFTRN 297
S + I SGS+ G I D V+ VAT S E+ L + +
Sbjct: 104 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG--HSQEVCGLRWAPD 161
Query: 298 GKYLLSSGKDSLVKLW 313
G++L S G D+LV +W
Sbjct: 162 GRHLASGGNDNLVNVW 177
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 263 DGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCL 321
D + +W S + G ISS+ + + G YL + V+LW++ + L
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 102
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 179 IEEVTCLEFHPSAPILASGSKDKTVKMFD-YSKSSVRKAHKTIQESTFVRCLSFHPCGDY 237
+E+V H S + S + D+ + ++D S ++ + +H + V CLSF+P ++
Sbjct: 232 VEDVAWHLLHES--LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 238 MVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKC-VATFSKAHDGAEISSLTFT- 295
I +GS D + +WD + K + TF D EI + ++
Sbjct: 290 ------------------ILATGSADKTVALWDLRNLKLKLHTFESHKD--EIFQVHWSP 329
Query: 296 RNGKYLLSSGKDSLVKLWELS 316
N L SSG D + +W+LS
Sbjct: 330 HNETILASSGTDRRLNVWDLS 350
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 33/151 (21%)
Query: 178 HIEEVTCLEFHP-SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
H EV CL F+P S ILA+GS DKTV ++D ++ +F D
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-------------LKLHTFESHKD 320
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDG---------- 286
+ F + + I S D + +WD + A DG
Sbjct: 321 EI------FQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 287 --AEISSLTFTRNGKYLLSS-GKDSLVKLWE 314
A+IS ++ N +++ S +D++ ++W+
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 24/149 (16%)
Query: 170 PVIRTLYDHIEEVTCLEFHPSAP-ILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRC 228
PVI TL H + V + +HP+A +L S D + ++D + +
Sbjct: 123 PVI-TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGA----------AVLTLG 171
Query: 229 LSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAE 288
HP Y V +S DG + C+ +D +++ + VA + H+G
Sbjct: 172 PDVHPDTIYSVD---------WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR 222
Query: 289 ISSLTFTRNGKYL---LSSGKDSLVKLWE 314
F GK L S + V LW+
Sbjct: 223 PVHAVFVSEGKILTTGFSRMSERQVALWD 251
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 34/166 (20%)
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSK-------------SSVRKAHKTIQEST 224
H +V ++ A + SGS+DKT+K++ S VR +
Sbjct: 106 HKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDD 165
Query: 225 FVRCLS--------------FHPCGDYMVVGTDHFVLRLYSS-DGRIYCSGSKDGDIKIW 269
V +S F D+ +G + + L +S DG + S KDG+I +W
Sbjct: 166 SVTIISAGNDKXVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Query: 270 DGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWEL 315
+ + K T S A D E+ SL F+ N +Y L++ + +K++ L
Sbjct: 224 NLAAKKAXYTLS-AQD--EVFSLAFSPN-RYWLAAATATGIKVFSL 265
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 258 CSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGK------YLLSSGKDSLVK 311
SGS+D IK+W + +C+AT +D +S + N K ++S+G D VK
Sbjct: 123 ISGSRDKTIKVWT-IKGQCLATLLGHND--WVSQVRVVPNEKADDDSVTIISAGNDKXVK 179
Query: 312 LWELSSARCLIAYTGAGS 329
W L+ + + G S
Sbjct: 180 AWNLNQFQIEADFIGHNS 197
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 42/155 (27%)
Query: 137 GSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILAS 196
G+ + IK+LD + L + + DQ H+ E+T L+F PS L S
Sbjct: 112 GTTEGDIKVLDSNFNLQR--------EIDQA----------HVSEITKLKFFPSGEALIS 153
Query: 197 GSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRI 256
S+D +K++ ++++ + R L H + D GR
Sbjct: 154 SSQDMQLKIW------------SVKDGSNPRTLIGHRATVTDIAIIDR---------GRN 192
Query: 257 YCSGSKDGDIKIWDGVSSKCVATFSKA---HDGAE 288
S S DG I++W+ + + TF++ HDG
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN 227
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 255 RIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWE 314
R + G+ +GDIK+ D + +AH +EI+ L F +G+ L+SS +D +K+W
Sbjct: 107 RRFILGTTEGDIKVLDS-NFNLQREIDQAH-VSEITKLKFFPSGEALISSSQDMQLKIWS 164
Query: 315 L---SSARCLIAY 324
+ S+ R LI +
Sbjct: 165 VKDGSNPRTLIGH 177
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 42/155 (27%)
Query: 137 GSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILAS 196
G+ + IK+LD + L + + DQ H+ E+T L+F PS L S
Sbjct: 115 GTTEGDIKVLDSNFNLQR--------EIDQA----------HVSEITKLKFFPSGEALIS 156
Query: 197 GSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRI 256
S+D +K++ ++++ + R L H + D GR
Sbjct: 157 SSQDMQLKIW------------SVKDGSNPRTLIGHRATVTDIAIIDR---------GRN 195
Query: 257 YCSGSKDGDIKIWDGVSSKCVATFSKA---HDGAE 288
S S DG I++W+ + + TF++ HDG
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN 230
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 255 RIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWE 314
R + G+ +GDIK+ D + +AH +EI+ L F +G+ L+SS +D +K+W
Sbjct: 110 RRFILGTTEGDIKVLDS-NFNLQREIDQAH-VSEITKLKFFPSGEALISSSQDMQLKIWS 167
Query: 315 L---SSARCLIAY 324
+ S+ R LI +
Sbjct: 168 VKDGSNPRTLIGH 180
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 24/149 (16%)
Query: 170 PVIRTLYDHIEEVTCLEFHPSAP-ILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRC 228
PVI TL H + V + +HP+A +L S D + ++D + +
Sbjct: 123 PVI-TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA----------AVLTLG 171
Query: 229 LSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAE 288
HP Y V +S DG + C+ +D +++ + VA + H+G
Sbjct: 172 PDVHPDTIYSVD---------WSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR 222
Query: 289 ISSLTFTRNGKYL---LSSGKDSLVKLWE 314
F GK L S + V LW+
Sbjct: 223 PVHAVFVSEGKILTTGFSRMSERQVALWD 251
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 247 LRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGA-EISSLTFTRNGKYLLSSG 305
L+ + D + S SKD +++W+ + VA F E+ S + G+ ++S G
Sbjct: 157 LKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 216
Query: 306 KDSLVKLWELSSARCLIA 323
D +KLW ++S R + A
Sbjct: 217 MDHSLKLWRINSKRMMNA 234
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 259 SGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-TRNGKYLLSSGKDSLVKLWELSS 317
+GS+ G I+I + ++ +C+ + G I+ L F R+ LLS KD ++LW + +
Sbjct: 127 AGSR-GIIRIINPITMQCIKHY--VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 183
Query: 318 ARCLIAYTGAGSMGQQFELTLTVDADV 344
L+A G G G + E+ L+ D D+
Sbjct: 184 D-TLVAIFG-GVEGHRDEV-LSADYDL 207
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 36/137 (26%)
Query: 114 YVTSHKSPCRAGAFSI---DGQLCATGSVDASIKILDV--DRMLAKSSMESSEPQNDQQG 168
Y+ + P + G F++ D Q AT DA+I++ DV + + K +++ + N Q G
Sbjct: 244 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303
Query: 169 -------------------------HPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTV 203
V++T+ H + +T L +P L SGS D
Sbjct: 304 VVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDG-- 357
Query: 204 KMFDYSKSSVRKAHKTI 220
++ ++S SS+ + H +
Sbjct: 358 RIMEWSSSSMHQDHSNL 374
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 34/150 (22%)
Query: 206 FDYSKSSVRKAHKTIQESTFVRCLSFHP-CGDYMV-VGTDH------------------- 244
F +S S R HK + +FVR + F P G++++ VG+D
Sbjct: 193 FKFSASD-RTHHK---QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248
Query: 245 ------FVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVA--TFSKAHDGAEISSLTFTR 296
+ L D + + + D I++WD +SKCV T K G + + T
Sbjct: 249 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG 308
Query: 297 NGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
NG+ ++S D + +EL L +G
Sbjct: 309 NGR-IISLSLDGTLNFYELGHDEVLKTISG 337
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 247 LRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGA-EISSLTFTRNGKYLLSSG 305
L+ + D + S SKD +++W+ + VA F E+ S + G+ ++S G
Sbjct: 116 LKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 175
Query: 306 KDSLVKLWELSSARCLIA 323
D +KLW ++S R + A
Sbjct: 176 MDHSLKLWRINSKRMMNA 193
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 259 SGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-TRNGKYLLSSGKDSLVKLWELSS 317
+GS+ G I+I + ++ +C+ + G I+ L F R+ LLS KD ++LW + +
Sbjct: 86 AGSR-GIIRIINPITMQCIKHY--VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 142
Query: 318 ARCLIAYTGAGSMGQQFELTLTVDADV 344
L+A G G G + E+ L+ D D+
Sbjct: 143 D-TLVAIFG-GVEGHRDEV-LSADYDL 166
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 247 LRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGA-EISSLTFTRNGKYLLSSG 305
L+ + D + S SKD +++W+ + VA F E+ S + G+ ++S G
Sbjct: 120 LKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 179
Query: 306 KDSLVKLWELSSARCLIA 323
D +KLW ++S R + A
Sbjct: 180 MDHSLKLWRINSKRMMNA 197
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 259 SGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-TRNGKYLLSSGKDSLVKLWELSS 317
+GS+ G I+I + ++ +C+ + G I+ L F R+ LLS KD ++LW + +
Sbjct: 90 AGSR-GIIRIINPITMQCIKHY--VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
Query: 318 ARCLIAYTGAGSMGQQFELTLTVDADV 344
L+A G G G + E+ L+ D D+
Sbjct: 147 DT-LVAIFG-GVEGHRDEV-LSADYDL 170
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 247 LRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGA-EISSLTFTRNGKYLLSSG 305
L+ + D + S SKD +++W+ + VA F E+ S + G+ ++S G
Sbjct: 121 LKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 180
Query: 306 KDSLVKLWELSSARCLIA 323
D +KLW ++S R + A
Sbjct: 181 MDHSLKLWRINSKRMMNA 198
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 259 SGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-TRNGKYLLSSGKDSLVKLWELSS 317
+GS+ G I+I + ++ +C+ + G I+ L F R+ LLS KD ++LW + +
Sbjct: 91 AGSR-GIIRIINPITMQCIKHY--VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147
Query: 318 ARCLIAYTGAGSMGQQFELTLTVDADV 344
L+A G G G + E+ L+ D D+
Sbjct: 148 DT-LVAIFG-GVEGHRDEV-LSADYDL 171
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 247 LRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGA-EISSLTFTRNGKYLLSSG 305
L+ + D + S SKD +++W+ + VA F E+ S + G+ ++S G
Sbjct: 120 LKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG 179
Query: 306 KDSLVKLWELSSARCLIA 323
D +KLW ++S R + A
Sbjct: 180 MDHSLKLWRINSKRMMNA 197
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 259 SGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-TRNGKYLLSSGKDSLVKLWELSS 317
+GS+ G I+I + ++ +C+ + G I+ L F R+ LLS KD ++LW + +
Sbjct: 90 AGSR-GIIRIINPITMQCIKHY--VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
Query: 318 ARCLIAYTGAGSMGQQFELTLTVDADV 344
L+A G G G + E+ L+ D D+
Sbjct: 147 DT-LVAIFG-GVEGHRDEV-LSADYDL 170
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
Y+ +G + S SKD +W ++ + + T H G I S+ KY ++ D
Sbjct: 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-GHTGT-IWSIDVDCFTKYCVTGSADYS 97
Query: 310 VKLWELSSARCLIAY 324
+KLW++S+ +C+ +
Sbjct: 98 IKLWDVSNGQCVATW 112
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 33/198 (16%)
Query: 132 QLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSA 191
+ C TGS D SIK+ DV ++ +S P V +EF P
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWKSPVP-------------------VKRVEFSPCG 127
Query: 192 ----PILASGSKD-KTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFV 246
IL + K+ ++ +++ + S + E + ++ G D
Sbjct: 128 NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE--------GLDAAT 179
Query: 247 LRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGK 306
+ +S+ G+ +G KDG I +D VS+ S IS + F+ + Y ++S +
Sbjct: 180 VAGWSTKGKYIIAGHKDGKISKYD-VSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR 238
Query: 307 DSLVKLWELSSARCLIAY 324
D+ L ++S+ + L Y
Sbjct: 239 DTNSFLVDVSTLQVLKKY 256
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 34/150 (22%)
Query: 206 FDYSKSSVRKAHKTIQESTFVRCLSFHP-CGDYMV-VGTDH------------------- 244
F +S S R HK + +FVR + F P G++++ VG+D
Sbjct: 193 FKFSASD-RTHHK---QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248
Query: 245 ------FVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVA--TFSKAHDGAEISSLTFTR 296
+ L D + + + D I++WD +SKCV T K G + + T
Sbjct: 249 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG 308
Query: 297 NGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
NG+ ++S D + +EL L +G
Sbjct: 309 NGR-IISLSLDGTLNFYELGHDEVLKTISG 337
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 34/120 (28%)
Query: 114 YVTSHKSPCRAGAFSI---DGQLCATGSVDASIKILDV--DRMLAKSSMESSEPQNDQQG 168
Y+ + P + G F++ D Q AT DA+I++ DV + + K +++ + N Q G
Sbjct: 244 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303
Query: 169 -------------------------HPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTV 203
V++T+ H + +T L +P L SGS D +
Sbjct: 304 VVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRI 359
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 193 ILASGSKDKTVKMFDYSK----SSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTD---HF 245
++A+G + TV++ + S + H I S +R + F P G + + D
Sbjct: 209 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 268
Query: 246 VLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSG 305
+ LY ++ G + G + + S + F+ + + + SL+F +G+ L S+G
Sbjct: 269 CITLYETE-----FGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGETLCSAG 320
Query: 306 KDSLVKLWELSS 317
D ++ W++ +
Sbjct: 321 WDGKLRFWDVKT 332
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 21/196 (10%)
Query: 148 VDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHP-SAPILASGSKDKTVKMF 206
V+R + S + +D G I ++ + ++P ILA G K+ ++
Sbjct: 14 VERETQEDDTNSIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLA 73
Query: 207 DYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVG--TDHFVLRLYSSDGRIYCSGSKDG 264
++ + K + T + L HP G T+ +S DG +G ++G
Sbjct: 74 RIVETD--QEGKKYWKLTIIAELR-HPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENG 130
Query: 265 DIKIWDGVSSKC-VATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIA 323
++++W+ + V F + A I S+ + ++G +++S +++ LW + S
Sbjct: 131 ELRLWNKTGALLNVLNFHR----APIVSVKWNKDGTHIISMDVENVTILWNVIS------ 180
Query: 324 YTGAGSMGQQFELTLT 339
G++ Q FEL T
Sbjct: 181 ----GTVMQHFELKET 192
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 29/190 (15%)
Query: 135 ATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPIL 194
AT SVD ++KI D+ ++ K+S S P HPV C F P L
Sbjct: 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHR----HPV---------NAAC--FSPDGARL 311
Query: 195 ASGSKDKTVKMFDYSKSS-----VRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRL 249
+ + ++++ S+ + H+ Q T ++ ++HP + +VVG
Sbjct: 312 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA-AWHPRYNLIVVGR------- 363
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
Y C+ + I ++DG S K + + + ISSL L+S
Sbjct: 364 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFNPMGDTLASAMGYH 422
Query: 310 VKLWELSSAR 319
+ +W AR
Sbjct: 423 ILIWSQQEAR 432
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 163 QNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTI-- 220
+ D G RT DH + VTC+++ P + + + S+D+ +++ K +
Sbjct: 39 EQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR 98
Query: 221 --QESTFVRCLSFHPCGDYMVVGTDHFVL 247
+ +TFVR + P D VG+ V+
Sbjct: 99 LNRAATFVR---WSPNEDKFAVGSGARVI 124
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 29/190 (15%)
Query: 135 ATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPIL 194
AT SVD ++KI D+ ++ K+S S P HPV C F P L
Sbjct: 268 ATASVDQTVKIWDLRQVRGKASFLYSLPHR----HPV---------NAAC--FSPDGARL 312
Query: 195 ASGSKDKTVKMFDYSKSS-----VRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRL 249
+ + ++++ S+ + H+ Q T ++ ++HP + +VVG
Sbjct: 313 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA-AWHPRYNLIVVGR------- 364
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
Y C+ + I ++DG S K + + + ISSL L+S
Sbjct: 365 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFNPMGDTLASAMGYH 423
Query: 310 VKLWELSSAR 319
+ +W AR
Sbjct: 424 ILIWSQEEAR 433
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 193 ILASGSKDKTVKMFDYSK----SSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTD---HF 245
++A+G + TV++ + S + H I S +R + F P G + + D
Sbjct: 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 258
Query: 246 VLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSG 305
+ LY ++ G + G + + S + F+ + + + SL+F +G+ L S+G
Sbjct: 259 CITLYETE-----FGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGETLCSAG 310
Query: 306 KDSLVKLWELSS 317
D ++ W++ +
Sbjct: 311 WDGKLRFWDVKT 322
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 20/95 (21%)
Query: 176 YDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCG 235
Y+H + V L SG KD +VK++D S+ +V K++ S+ V C++ P
Sbjct: 136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA--HSSEVNCVAACPGK 193
Query: 236 DYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
D I+ S +DG I +WD
Sbjct: 194 D------------------TIFLSCGEDGRILLWD 210
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 178 HIEEVTCLEF-HPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC-- 234
H + +T L + + S+P LAS S+D TV + D S V + + FV +++ P
Sbjct: 268 HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV---FRDLSHRDFVTGVAWSPLDH 324
Query: 235 GDYMVVGTDHFVLRLY-SSDGR 255
+ VG DH VL + S+GR
Sbjct: 325 SKFTTVGWDHKVLHHHLPSEGR 346
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 261 SKDGDIKIWDGVS--SKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSA 318
S G +++W+ + S V F+K + +L+ +G +S GKD VK+W+LS
Sbjct: 112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171
Query: 319 RCLIAYTGAGS 329
L +Y S
Sbjct: 172 AVLKSYNAHSS 182
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 131 GQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEF-HP 189
G+ AT S D +IKI +V+ + H +I TL H V +++ HP
Sbjct: 21 GKRMATCSSDKTIKIFEVE----------------GETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 190 S-APILASGSKDKTVKMFD-----YSKSSVRKAHKTIQESTFVRCLSF--HPCGDYMVVG 241
ILAS S D V ++ +S+ +V H S V + + H G ++V
Sbjct: 65 KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVH-----SASVNSVQWAPHEYGPMLLVA 119
Query: 242 TDHFVLRLYSSDGRIYCSGSKDGDIK---IWD----GVSSKCVATFSKAHDGAEISSLTF 294
SSDG++ K+ I D GV+S A + DG
Sbjct: 120 ---------SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH----NG 166
Query: 295 TRNGKYLLSSGKDSLVKLWELSS 317
T+ + ++ G D+LVK+W+ +S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNS 189
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 131 GQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEF-HP 189
G+ AT S D +IKI +V+ + H +I TL H V +++ HP
Sbjct: 21 GKRXATCSSDKTIKIFEVE----------------GETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 190 S-APILASGSKDKTVKMFD-----YSKSSVRKAHKTIQESTFVRCLSF--HPCGDYMVVG 241
ILAS S D V ++ +S+ +V H S V + + H G ++V
Sbjct: 65 KFGTILASCSYDGKVXIWKEENGRWSQIAVHAVH-----SASVNSVQWAPHEYGPXLLVA 119
Query: 242 TDHFVLRLYSSDGRIYCSGSKDGDIK---IWD----GVSSKCVATFSKAHDGAEISSLTF 294
SSDG++ K+ I D GV+S A + DG
Sbjct: 120 ---------SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH----NG 166
Query: 295 TRNGKYLLSSGKDSLVKLWELSS 317
T+ + ++ G D+LVK+W+ +S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNS 189
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 30/176 (17%)
Query: 135 ATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPIL 194
AT SVD ++KI D+ ++ K+S S P HPV C F P L
Sbjct: 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHR----HPV---------NAAC--FSPDGARL 311
Query: 195 ASGSKDKTVKMFDYSKSS-----VRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRL 249
+ + ++++ S+ + H+ Q T ++ ++HP + +VVG
Sbjct: 312 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA-AWHPRYNLIVVGR------- 363
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLT-FTRNGKYLLSS 304
Y C+ + I ++DG S K + + + ISSL F G L S+
Sbjct: 364 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFNPMGDTLASA 418
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 131 GQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEF-HP 189
G+ AT S D +IKI +V+ + H +I TL H V +++ HP
Sbjct: 21 GKRLATCSSDKTIKIFEVE----------------GETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 190 S-APILASGSKDKTVKMFD-----YSKSSVRKAHKTIQESTFVRCLSF--HPCGDYMVVG 241
ILAS S D V ++ +S+ +V H S V + + H G ++V
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH-----SASVNSVQWAPHEYGPLLLVA 119
Query: 242 TDHFVLRLYSSDGRIYCSGSKDGDIK---IWD----GVSSKCVATFSKAHDGAEISSLTF 294
SSDG++ K+ I D GV+S A + DG
Sbjct: 120 ---------SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH----NG 166
Query: 295 TRNGKYLLSSGKDSLVKLWELSS 317
T+ + ++ G D+LVK+W+ +S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNS 189
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 131 GQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEF-HP 189
G+ AT S D +IKI +V+ + H +I TL H V +++ HP
Sbjct: 21 GKRLATCSSDKTIKIFEVE----------------GETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 190 S-APILASGSKDKTVKMFD-----YSKSSVRKAHKTIQESTFVRCLSF--HPCGDYMVVG 241
ILAS S D V ++ +S+ +V H S V + + H G ++V
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH-----SASVNSVQWAPHEYGPLLLVA 119
Query: 242 TDHFVLRLYSSDGRIYCSGSKDGDIK---IWD----GVSSKCVATFSKAHDGAEISSLTF 294
SSDG++ K+ I D GV+S A + DG
Sbjct: 120 ---------SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH----NG 166
Query: 295 TRNGKYLLSSGKDSLVKLWELSS 317
T+ + ++ G D+LVK+W+ +S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNS 189
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 50/203 (24%)
Query: 131 GQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEF-HP 189
G+ AT S D +IKI +V+ + H +I TL H V +++ HP
Sbjct: 23 GKRLATCSSDKTIKIFEVE----------------GETHKLIDTLTGHEGPVWRVDWAHP 66
Query: 190 S-APILASGSKDKTVKMFD-----YSKSSVRKAHKTIQESTFVRCLSF--HPCGDYMVVG 241
ILAS S D V ++ +S+ +V H S V + + H G ++V
Sbjct: 67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH-----SASVNSVQWAPHEYGPLLLVA 121
Query: 242 TDHFVLRLYSSDGRIYCSGSKDGDIK---IWD----GVSSKCVATFSKAHDGAEISSLTF 294
SSDG++ K+ I D GV+S A + DG
Sbjct: 122 ---------SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH----NG 168
Query: 295 TRNGKYLLSSGKDSLVKLWELSS 317
T+ + ++ G D+LVK+W+ +S
Sbjct: 169 TKESRKFVTGGADNLVKIWKYNS 191
>pdb|4EXQ|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase (Upd)
From Burkholderia Thailandensis E264
Length = 368
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 275 KCVATFSKAHDGAEISSLTFTRNGKYLL----SSGKDSLVKLWELSSARC 320
+ VA + HDGA + ++ FT+ G L ++G D++ W ++ R
Sbjct: 239 RVVAQLKREHDGARVPAIAFTKGGGLWLEDLAATGVDAVGLDWTVNLGRA 288
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 25/141 (17%)
Query: 200 DKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSD------ 253
++ V +++ SV +T EST+V + + G ++ VG + ++ +Y +
Sbjct: 112 ERNVYVWNADSGSVSALAET-DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 254 ------GRIYC---------SGSKDGDIKIWD-GVSSKCVATFSKAHDGAEISSLTFTRN 297
R+ C SGS+ G I D +++ + T + H +E+ L + +
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL-QGH-SSEVCGLAWRSD 228
Query: 298 GKYLLSSGKDSLVKLWELSSA 318
G L S G D++V++W+ S+
Sbjct: 229 GLQLASGGNDNVVQIWDARSS 249
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 27/148 (18%)
Query: 125 GAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSE-PQNDQQGHPVIRTLYDHIEEVT 183
GA S+ + ATG ++ I + +E+ E P +GH + + + I+ +
Sbjct: 74 GATSLQQRYLATGDFGGNLHIWN---------LEAPEMPVYSVKGH---KEIINAIDGIG 121
Query: 184 CLEFHPSAPILASGSKDKTVKMFD-YSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGT 242
L AP + +GS+D TVK++D K + +Q C + + G
Sbjct: 122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT-------VAFGN 174
Query: 243 DHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
Y+ + R+ C+G +GDIK++D
Sbjct: 175 ------AYNQEERVVCAGYDNGDIKLFD 196
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 165 DQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQEST 224
D V+RT H V C++ P+ I++ G +D+TV+++ S+++ S
Sbjct: 211 DXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQVITLPAISI 269
Query: 225 F-VRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCS 259
+ V C S GD +V +D+ V R++S + + S
Sbjct: 270 WSVDCXS---NGDIIVGSSDNLV-RIFSQEKSRWAS 301
>pdb|1PIV|3 Chain 3, Binding Of The Antiviral Drug Win51711 To The Sabin Strain
Of Type 3 Poliovirus: Structural Comparison With Drug
Binding In Rhinovirus 14
pdb|1PVC|3 Chain 3, Refinement Of The Sabin Strain Of Type 3 Poliovirus At 2.4
Angstroms And The Crystal Structures Of Its Variants At
2.9 Angstroms Resolution
Length = 238
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 25/170 (14%)
Query: 114 YVTS--HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPV 171
Y+TS H+SPC F + + G V +++ ++D M+ ++ES++
Sbjct: 13 YLTSDNHQSPCAIPEFDVTPPIDIPGEVKNMMELAEIDTMIPL-NLESTKRNTMDMYRVT 71
Query: 172 IRTLYDHIEEVTCLEFHPSA-PILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLS 230
+ D + + CL P+ P L+ + + + + S++ +
Sbjct: 72 LSDSADLSQPILCLSLSPAFDPRLSHTMLGEVLNYYTHWAGSLK--------------FT 117
Query: 231 FHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKD---GDIKIWD-GVSSKC 276
F CG M G +L Y+ G + K+ G IWD G+ S C
Sbjct: 118 FLFCGSMMATGK---ILVAYAPPGAQPPTSRKEAMLGTHVIWDLGLQSSC 164
>pdb|1VBE|3 Chain 3, Poliovirus (Type 3, Sabin Strain, Mutant 242-H2) Complexed
With R78206
pdb|1VBC|3 Chain 3, Poliovirus (Type 3, Sabin Strain) (P3SABIN, P3LEON12A(1)
B) Complexed With R77975
pdb|1VBB|3 Chain 3, Poliovirus (type 3, Sabin Strain) (p3/sabin,
P3/leon/12a(1) B) Complexed With R80633
pdb|1VBA|3 Chain 3, Poliovirus (type 3, Sabin Strain) (p3/sabin,
P3/leon/12a(1) B) Complexed With R78206
pdb|3EPD|3 Chain 3, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 3
Length = 235
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 25/179 (13%)
Query: 103 SAPEPAQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEP 162
+ P QY T+ +H+SPC F + + G V +++ ++D M+ ++ES++
Sbjct: 6 NTPGSNQYLTS--DNHQSPCAIPEFDVTPPIDIPGEVKNMMELAEIDTMIPL-NLESTKR 62
Query: 163 QNDQQGHPVIRTLYDHIEEVTCLEFHPSA-PILASGSKDKTVKMFDYSKSSVRKAHKTIQ 221
+ D + + CL P+ P L+ + + + + S++
Sbjct: 63 NTMDMYRVTLSDSADLSQPILCLSLSPAFDPRLSHTMLGEVLNYYTHWAGSLK------- 115
Query: 222 ESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKD---GDIKIWD-GVSSKC 276
+F CG M G +L Y+ G + K+ G IWD G+ S C
Sbjct: 116 -------FTFLFCGSMMATGK---ILVAYAPPGAQPPTSRKEAMLGTHVIWDLGLQSSC 164
>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
pdb|3TC9|B Chain B, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
Length = 430
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 219 TIQESTFVRCLSFHPCGD--YMVVGTDHFVLR 248
TIQ+S + + FHP G+ Y+VV H++LR
Sbjct: 265 TIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 255 RIYCSGSKDGD--IKIWDGVSSKC-VATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVK 311
R+ + D D I IWD ++ + T ++ H +S ++ LLSSG+D+ V
Sbjct: 229 RVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVL 288
Query: 312 LWELSSARCLIAYTGAGSM 330
LW SA L + G+
Sbjct: 289 LWNPESAEQLSQFPARGNW 307
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 260 GSKDGDIKIW--DGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSS 317
S G +++W D + V+ F K +S+++ +G +S KD +K+W+L+
Sbjct: 99 ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158
Query: 318 ARCLIAY 324
L +Y
Sbjct: 159 QVVLSSY 165
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 21/149 (14%)
Query: 176 YDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCG 235
Y+H + V+ + S SGSKD +K++D ++ V +++ + V C++ P
Sbjct: 124 YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA--HAAQVTCVAASPHK 181
Query: 236 DYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF- 294
D ++ S S+D I +WD K + + G +SL +
Sbjct: 182 D------------------SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH 223
Query: 295 TRNGKYLLSSGKDSLVKLWELSSARCLIA 323
+ + + ++ V L + S C+++
Sbjct: 224 PQQSEVFVFGDENGTVSLVDTKSTSCVLS 252
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 256 IYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF-TRNGKYLLSSGKDSLVKLWE 314
+ +G +DG + IWD + KAH+ AE+ + F N ++L + +D + W+
Sbjct: 251 VVATGGQDGMLSIWDVRQGTMPVSLLKAHE-AEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Query: 315 LSS 317
S+
Sbjct: 310 AST 312
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 28/89 (31%)
Query: 241 GTDHFVLRLYSSDGRIYCSGSKDG-DIKIWDGVSSKCVATFSKAHDGAEISSLT------ 293
G H +L LYS G ++C+ + G D +I V VA H+ E + L
Sbjct: 1 GMSHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQL 60
Query: 294 ---------------------FTRNGKYL 301
FTRNGKYL
Sbjct: 61 TPQVIKKWNVDTILMSPPCQPFTRNGKYL 89
>pdb|2LFI|A Chain A, Solution Nmr Structure Of A Mucbp Domain (Fragment
187-294) Of The Protein Lba1460 From Lactobacillus
Acidophilus, Northeast Structural Genomics Consortium
Target Lar80a
Length = 122
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 283 AHDGAEISSLTFTRNGKYLLSSGKD------SLVKLWELSSARCLIAYTGAGSMGQQFEL 336
AHD + SL FT++GK L++GK+ SL + +E + +I YT M E+
Sbjct: 25 AHDD-HVVSLIFTQSGKRDLTNGKEIWDSKWSLTQTFEALPSPVIIGYTADKPMVGPDEV 83
Query: 337 TL 338
T+
Sbjct: 84 TV 85
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 54/143 (37%), Gaps = 25/143 (17%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL 175
TSH+ G AT S D S+KI DV G +I L
Sbjct: 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDV----------------RNGGQILIADL 53
Query: 176 YDHIEEVTCLEF-HPS-APILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHP 233
H V + + HP ILAS S D+ V ++ + K+H+ + V + + P
Sbjct: 54 RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP 113
Query: 234 CGDYMVVGTDHFVLRLYSSDGRI 256
DY +L SSDG I
Sbjct: 114 -HDYG------LILACGSSDGAI 129
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 254 GRIYCSGSKDGDIKIWD-GVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKL 312
G +GS D++ W+ S + + + H G + + ++ +G + ++ D K+
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGP-VLDVCWSDDGSKVFTASCDKTAKM 112
Query: 313 WELSSARCL 321
W+LSS + +
Sbjct: 113 WDLSSNQAI 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,262,955
Number of Sequences: 62578
Number of extensions: 419935
Number of successful extensions: 1698
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 412
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)