RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15157
(344 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 117 bits (296), Expect = 7e-31
Identities = 66/209 (31%), Positives = 99/209 (47%), Gaps = 47/209 (22%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL 175
H P R A S DG A+GS D +I++ D+ + +RTL
Sbjct: 48 KGHTGPVRDVAASADGTYLASGSSDKTIRLWDL------------------ETGECVRTL 89
Query: 176 YDHIEEVTCLEFHPSAPILASGSKDKTVKMFD---YSKSSVRKAHKTIQESTFVRCLSFH 232
H V+ + F P IL+S S+DKT+K++D + + H + +V ++F
Sbjct: 90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-----TDWVNSVAFS 144
Query: 233 PCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSL 292
P DG S S+DG IK+WD + KCVAT H G E++S+
Sbjct: 145 P-------------------DGTFVASSSQDGTIKLWDLRTGKCVATL-TGHTG-EVNSV 183
Query: 293 TFTRNGKYLLSSGKDSLVKLWELSSARCL 321
F+ +G+ LLSS D +KLW+LS+ +CL
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212
Score = 111 bits (280), Expect = 2e-28
Identities = 61/219 (27%), Positives = 96/219 (43%), Gaps = 47/219 (21%)
Query: 111 ETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHP 170
+ H AFS DG+L ATGS D +IK+ D++
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE------------------ 42
Query: 171 VIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVR---KAHKTIQESTFVR 227
++RTL H V + LASGS DKT++++D H + +V
Sbjct: 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS-----YVS 97
Query: 228 CLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGA 287
++F P DGRI S S+D IK+WD + KC+ T + H
Sbjct: 98 SVAFSP-------------------DGRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDW 137
Query: 288 EISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
++S+ F+ +G ++ SS +D +KLW+L + +C+ TG
Sbjct: 138 -VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG 175
Score = 106 bits (267), Expect = 1e-26
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 43/200 (21%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL 175
H + AFS DG A+ S D +IK+ D+ + TL
Sbjct: 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR------------------TGKCVATL 173
Query: 176 YDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQEST-FVRCLSFHPC 234
H EV + F P L S S D T+K++D S K T++ V ++F P
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSP- 229
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
DG + SGS+DG I++WD + +CV T S H + ++SL +
Sbjct: 230 ------------------DGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNS-VTSLAW 269
Query: 295 TRNGKYLLSSGKDSLVKLWE 314
+ +GK L S D +++W+
Sbjct: 270 SPDGKRLASGSADGTIRIWD 289
Score = 106 bits (266), Expect = 2e-26
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 41/216 (18%)
Query: 111 ETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHP 170
+T H S + AFS DG++ ++ S D +IK+ DV E+ +
Sbjct: 85 CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV---------ETGKC-------- 127
Query: 171 VIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLS 230
+ TL H + V + F P +AS S+D T+K++D + V ++
Sbjct: 128 -LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG--HTGEVNSVA 184
Query: 231 FHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEIS 290
F P DG S S DG IK+WD + KC+ T H+ ++
Sbjct: 185 FSP-------------------DGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENG-VN 223
Query: 291 SLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
S+ F+ +G L S +D +++W+L + C+ +G
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG 259
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 93.2 bits (230), Expect = 5e-21
Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 42/215 (19%)
Query: 126 AFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCL 185
+FS DG L A+GS D +I++ D+ ++RTL H V +
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLR-----------------SSSSLLRTLSGHSSSVLSV 290
Query: 186 EFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVG---- 241
F P +LASGS D TV+++D + + V LSF P G +V G
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350
Query: 242 ---------TDHFVLRL----------YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSK 282
T + L +S DGR+ SGS DG +++WD + +
Sbjct: 351 GTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410
Query: 283 AHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSS 317
++SL F+ +GK L S D+ ++LW+L +
Sbjct: 411 HTS--RVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
Score = 79.7 bits (195), Expect = 2e-16
Identities = 61/246 (24%), Positives = 94/246 (38%), Gaps = 53/246 (21%)
Query: 109 QYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQG 168
+ + H+ + AFS DG+L +GS D +IK+ D+D +
Sbjct: 55 DLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSK 114
Query: 169 HPV------------------------------IRTLYDHIEEVTCLEFHPSAPILASGS 198
+ IRTL H E VT L F P +LASGS
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS 174
Query: 199 -KDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIY 257
D T+K++D + V L+F P G ++
Sbjct: 175 SLDGTIKLWDLRTGKPLSTLAG--HTDPVSSLAFSPDGGLLIA----------------- 215
Query: 258 CSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSS 317
SGS DG I++WD + K + + H + +SS F+ +G L S D ++LW+L S
Sbjct: 216 -SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS--FSPDGSLLASGSSDGTIRLWDLRS 272
Query: 318 ARCLIA 323
+ L+
Sbjct: 273 SSSLLR 278
Score = 45.5 bits (106), Expect = 3e-05
Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 33/194 (17%)
Query: 111 ETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQND----- 165
++ H S + AFS DG+L A+GS D ++++ D++ SS+ +
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 166 -----------------------QQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKT 202
+ G P+ + V + F P +++SGS D T
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLK--TLEGHSNVLSVSFSPDGRVVSSGSTDGT 393
Query: 203 VKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIY-CSGS 261
V+++D S S+ + V L F P G + G+ +RL+ + S S
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSR--VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFS 451
Query: 262 KDGDIKIWDGVSSK 275
DG +
Sbjct: 452 PDGKVLASKSSDLS 465
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 47.3 bits (113), Expect = 1e-07
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 171 VIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFD 207
++RTL H VT + F P +LASGS D TV+++D
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 38.9 bits (91), Expect = 9e-05
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 275 KCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
K + T K H G ++S+ F+ +G L S D V++W
Sbjct: 2 KLLRTL-KGHTGP-VTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 33.5 bits (77), Expect = 0.008
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 19/45 (42%)
Query: 226 VRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
V ++F P G+ + SGS DG +++WD
Sbjct: 14 VTSVAFSPDGNLLA-------------------SGSDDGTVRVWD 39
Score = 31.6 bits (72), Expect = 0.038
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKI 145
H P + AFS DG L A+GS D ++++
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 46.5 bits (111), Expect = 2e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 171 VIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFD 207
+++TL H VT + F P LASGS D T+K++D
Sbjct: 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 39.6 bits (93), Expect = 6e-05
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 273 SSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWE 314
S + + T K H G ++S+ F+ +GKYL S D +KLW+
Sbjct: 1 SGELLKTL-KGHTGP-VTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 33.1 bits (76), Expect = 0.013
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 241 GTDHFVLRL-YSSDGRIYCSGSKDGDIKIWD 270
G V + +S DG+ SGS DG IK+WD
Sbjct: 10 GHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 32.3 bits (74), Expect = 0.020
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILD 147
H P + AFS DG+ A+GS D +IK+ D
Sbjct: 9 KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 39.1 bits (91), Expect = 0.003
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 27/145 (18%)
Query: 175 LYDHIEEVTCLEFHPSAP-ILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHP 233
L H ++V + FHPSA +LAS D V ++D + KA + I +C S
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG---KAVEVI------KCHS--- 168
Query: 234 CGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLT 293
D + + ++ DG + C+ SKD + I D V++ +AH A+
Sbjct: 169 --DQ-ITSLE------WNLDGSLLCTTSKDKKLNIIDPRDGTIVSS-VEAHASAKSQRCL 218
Query: 294 FTRNGKYLLSSGKDSL----VKLWE 314
+ + +++ G + LW+
Sbjct: 219 WAKRKDLIITLGCSKSQQRQIMLWD 243
Score = 31.4 bits (71), Expect = 0.66
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 34/136 (25%)
Query: 135 ATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPIL 194
A+ D + + DV+R A + H +++T LE++ +L
Sbjct: 142 ASAGADMVVNVWDVERGKAVE------------------VIKCHSDQITSLEWNLDGSLL 183
Query: 195 ASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDG 254
+ SKDK + + D ++ + + + RCL + +G
Sbjct: 184 CTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG------------- 230
Query: 255 RIYCSGSKDGDIKIWD 270
CS S+ I +WD
Sbjct: 231 ---CSKSQQRQIMLWD 243
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 33.5 bits (76), Expect = 0.18
Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 56/226 (24%)
Query: 124 AGAFSIDGQLCATGSVDASIKILDVDRMLA---------------------------KSS 156
A F DG+ AT V+ IKI + + ++ KS
Sbjct: 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQ 547
Query: 157 MESSEPQNDQQGHPVIRT-----LYDHIEEVTCLEFHPSAP-ILASGSKDKTVKMFDYSK 210
+ SS + Q V R+ + +H + V +++ + P +LASGS D +VK++ ++
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607
Query: 211 SSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
+ TI+ + C+ F S GR GS D + +D
Sbjct: 608 GV---SIGTIKTKANICCVQFP------------------SESGRSLAFGSADHKVYYYD 646
Query: 271 GVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELS 316
+ K H +S + F + L+SS D+ +KLW+LS
Sbjct: 647 LRNPKLPLCTMIGHSKT-VSYVRFV-DSSTLVSSSTDNTLKLWDLS 690
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 33.0 bits (75), Expect = 0.25
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 36/120 (30%)
Query: 163 QNDQQGHPVIRTLYDHIEEVTCLEFHPS-APILASGSKDKTVKMFD--YSKSSVR----- 214
+N + PVI+ L H + L+F+P + ILASGS+D T+++++ ++ SV+
Sbjct: 59 ENQMRKPPVIK-LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDP 117
Query: 215 ----KAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
K HK + + ++P Y I CS D + IWD
Sbjct: 118 QCILKGHKKK-----ISIIDWNPMNYY------------------IMCSSGFDSFVNIWD 154
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 29.1 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 124 AGAFSIDGQLCATGS---VDASIKILDVDRMLAKSS 156
AG F+ GQ C GS V SI V+R++A++
Sbjct: 252 AGIFAAAGQTCVAGSRLLVQRSIYDEFVERLVARAR 287
>gnl|CDD|172156 PRK13587, PRK13587,
1-(5-phosphoribosyl)-5-[(5-
phosphoribosylamino)methylideneamino]
imidazole-4-carboxamide isomerase; Provisional.
Length = 234
Score = 28.3 bits (63), Expect = 5.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 197 GSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLS-----FHPCGDYMVVGT 242
G+K + + FDY KS R K I+ +R S F +Y +VGT
Sbjct: 56 GAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGT 106
>gnl|CDD|190325 pfam02488, EMA, Merozoite Antigen. This family represents the
immunodominant surface antigen of Theileria parasites
including equi merozoite antigen-1 (EMA-1) and equi
merozoite antigen-2 (EMA-2). The protein shows variation
at a putative glycosylation site, a potential mechanism
for host immune response evasion.
Length = 251
Score = 28.2 bits (63), Expect = 6.6
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 200 DKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHP 233
DKT+ D SK + K L+ HP
Sbjct: 46 DKTLYTVDTSKFTPVVVFKLKHGDKLFFKLNLHP 79
>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family
protein.
Length = 1057
Score = 28.3 bits (63), Expect = 6.8
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 249 LYSSDGRIYCSGSKDGDIKIWDGVSSKC--VATFSKA--HDG-------AEISSLTFTRN 297
L + DG+IY + S + IK D + + +A KA DG +E + L N
Sbjct: 810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869
Query: 298 GKYLLSSGKDSLVKLWEL 315
G+ ++ +SL++ +L
Sbjct: 870 GRLFVADTNNSLIRYLDL 887
>gnl|CDD|202169 pfam02239, Cytochrom_D1, Cytochrome D1 heme domain. Cytochrome cd1
(nitrite reductase) catalyzes the conversion of nitrite
to nitric oxide in the nitrogen cycle. This family
represents the d1 heme binding domain of cytochrome cd1,
in which His/Tyr side chains ligate the d1 heme iron of
the active site in the oxidized state.
Length = 369
Score = 28.2 bits (63), Expect = 7.3
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 263 DGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLI 322
G + + DG + +A F A S F+ +G+Y+ G+D + +L ++
Sbjct: 15 AGSVALIDGDRKEIIARFESG--YALHISRMFSSDGRYVYVIGRDGGLTKIDL-WNLEIV 71
Query: 323 AYTGAGS 329
A G
Sbjct: 72 AEVRQGG 78
>gnl|CDD|234377 TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated
beta-propeller protein. Members of this protein family
consist of seven repeats each of the YVTN family
beta-propeller repeat (see TIGR02276). Members occur
invariably as part of a transport operon that is
associated with PQQ-dependent catabolism of alcohols
such as phenylethanol.
Length = 300
Score = 28.1 bits (63), Expect = 7.8
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 254 GRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDS 308
+ Y S KD I + D + + TF G +TF+++GK L DS
Sbjct: 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV---GQRPRGITFSKDGKLLYVCASDS 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.388
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,677,736
Number of extensions: 1529299
Number of successful extensions: 1212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 37
Length of query: 344
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 246
Effective length of database: 6,590,910
Effective search space: 1621363860
Effective search space used: 1621363860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)