RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15157
(344 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 97.9 bits (242), Expect = 1e-23
Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 39/183 (21%)
Query: 131 GQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPS 190
+L +G+ DAS K+ DV +T H ++ + F P+
Sbjct: 196 TRLFVSGACDASAKLWDVRE------------------GMCRQTFTGHESDINAICFFPN 237
Query: 191 APILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLY 250
A+GS D T ++FD + + +SF G ++
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL----------- 286
Query: 251 SSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLV 310
+G D + +WD + + HD +S L T +G + + DS +
Sbjct: 287 --------AGYDDFNCNVWDALKADRAGVL-AGHDNR-VSCLGVTDDGMAVATGSWDSFL 336
Query: 311 KLW 313
K+W
Sbjct: 337 KIW 339
Score = 65.9 bits (159), Expect = 1e-12
Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 21/164 (12%)
Query: 163 QNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQE 222
D + T H +V L P + SG+ D + K++D + R+ +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 223 STFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSK 282
+ + F P +G + +GS D +++D + + + T+S
Sbjct: 228 D--INAICFFP-------------------NGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 283 AHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ I+S++F+++G+ LL+ D +W+ A G
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310
Score = 60.1 bits (144), Expect = 8e-11
Identities = 28/202 (13%), Positives = 59/202 (29%), Gaps = 8/202 (3%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQ------NDQQGHPV 171
H + A + D +L + S D + I D ++ +
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 172 IRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSF 231
L + + + + + + + + +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173
Query: 232 HPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISS 291
T + + D R++ SG+ D K+WD C TF H+ I++
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESD-INA 231
Query: 292 LTFTRNGKYLLSSGKDSLVKLW 313
+ F NG + D+ +L+
Sbjct: 232 ICFFPNGNAFATGSDDATCRLF 253
Score = 58.6 bits (140), Expect = 3e-10
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 18/90 (20%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
+ +FS G+L G D + + D + L
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA------------------DRAGVLAG 310
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFD 207
H V+CL +A+GS D +K+++
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 55.9 bits (133), Expect = 2e-09
Identities = 36/210 (17%), Positives = 75/210 (35%), Gaps = 29/210 (13%)
Query: 144 KILDVDRMLAKSSMESSEPQNDQQGHPVI---RTLYDHIEEVTCLEFHPSAPILASGSKD 200
+I D + A +++ D G + RTL H+ ++ + + + +L S S+D
Sbjct: 17 QIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQD 76
Query: 201 KTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDG------ 254
+ ++D + K H S++V ++ P G+Y+ G + +Y+
Sbjct: 77 GKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR 134
Query: 255 ------------------RIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTR 296
+ GD T + ++ SL+
Sbjct: 135 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 297 NGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ + +S D+ KLW++ C +TG
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTG 224
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 94.0 bits (232), Expect = 1e-22
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 25/200 (12%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSME--SSEPQNDQQGHPVIRT 174
H+ R + DG L A+ S D ++++ V K+ + + +
Sbjct: 141 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 200
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
+ P L SGS+DKT+KM+D S + +VR + FH
Sbjct: 201 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL--MTLVGHDNWVRGVLFHSG 258
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTF 294
G +++ S + D +++WD + +C+ T AH+ ++SL F
Sbjct: 259 GKFIL-------------------SCADDKTLRVWDYKNKRCMKTL-NAHEHF-VTSLDF 297
Query: 295 TRNGKYLLSSGKDSLVKLWE 314
+ Y+++ D VK+WE
Sbjct: 298 HKTAPYVVTGSVDQTVKVWE 317
Score = 90.6 bits (223), Expect = 2e-21
Identities = 39/179 (21%), Positives = 76/179 (42%), Gaps = 5/179 (2%)
Query: 149 DRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDY 208
+ +S + + + Q ++T H E V + + ++AS S D+TV+++
Sbjct: 113 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
Query: 209 SKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGT-DHFVLRLYSSDGRIYCSGSKDGDIK 267
+ + + + V C+S+ P Y + + G SGS+D IK
Sbjct: 173 ATKECK--AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 268 IWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+WD + C+ T HD + + F GK++LS D +++W+ + RC+
Sbjct: 231 MWDVSTGMCLMTL-VGHDNW-VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287
Score = 68.2 bits (165), Expect = 1e-13
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 23/178 (12%)
Query: 170 PVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKA------------- 216
P L H VT + FHP ++ S S+D T+K++DY +
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 217 --------HKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKI 268
+ + + C M + +G S S+D IK+
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127
Query: 269 WDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
W+ + CV TF+ + + + ++G + S D V++W +++ C
Sbjct: 128 WEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183
Score = 67.1 bits (162), Expect = 4e-13
Identities = 30/157 (19%), Positives = 52/157 (33%), Gaps = 23/157 (14%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVD--ASIKILDVDRMLAKSSMESSEPQNDQQGHPVIR 173
H+ +++ + + + K L S + + D +
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241
Query: 174 TLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHP 233
TL H V + FH + S + DKT++++DY K FV L FH
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--HEHFVTSLDFHK 299
Query: 234 CGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
Y+V +GS D +K+W+
Sbjct: 300 TAPYVV-------------------TGSVDQTVKVWE 317
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 91.0 bits (224), Expect = 4e-21
Identities = 33/203 (16%), Positives = 65/203 (32%), Gaps = 26/203 (12%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
DG+ A GS+D ++++ D + ++ +
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-----------TGFLVERLDSENESGTG 252
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDY 237
H + V + F + SGS D++VK+++ ++ + KT T H
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312
Query: 238 MVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDG-----AEISSL 292
V + + SGSKD + WD S + + H A +
Sbjct: 313 SVA---------TTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QGHRNSVISVAVANGS 362
Query: 293 TFTRNGKYLLSSGKDSLVKLWEL 315
+ + D ++W+
Sbjct: 363 SLGPEYNVFATGSGDCKARIWKY 385
Score = 81.0 bits (198), Expect = 1e-17
Identities = 44/248 (17%), Positives = 86/248 (34%), Gaps = 29/248 (11%)
Query: 101 DPSAPEPAQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESS 160
+P+ P E H S FS DG+ ATG + + ++ V + +
Sbjct: 44 NPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDD 102
Query: 161 EPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTI 220
N + + + + F P LA+G++D+ ++++D + +
Sbjct: 103 SAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 162
Query: 221 QESTFVRCLSFHPCGDYMVVG---------------------TDHFVLRLYSSDGRIYCS 259
++ + G + + DG+ +
Sbjct: 163 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222
Query: 260 GSKDGDIKIWDGVSSKCVATFS------KAHDGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
GS D +++WD + V H + + S+ FTR+G+ ++S D VKLW
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDS-VYSVVFTRDGQSVVSGSLDRSVKLW 281
Query: 314 ELSSARCL 321
L +A
Sbjct: 282 NLQNANNK 289
Score = 75.2 bits (183), Expect = 1e-15
Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 21/162 (12%)
Query: 109 QYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQG 168
E T HK + F+ DGQ +GS+D S+K+ ++ KS
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS------KTPNS 297
Query: 169 HPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRC 228
T H + V + + + SGSKD+ V +D + + + S V
Sbjct: 298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS--VIS 355
Query: 229 LSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
++ + ++ +GS D +IW
Sbjct: 356 VAVANGSS-------------LGPEYNVFATGSGDCKARIWK 384
Score = 51.7 bits (122), Expect = 5e-08
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 24/99 (24%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
HK + A + + + +GS D + D +S P + L
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDK---------KSGNP---------LLMLQG 348
Query: 178 HIEEVTCL------EFHPSAPILASGSKDKTVKMFDYSK 210
H V + P + A+GS D +++ Y K
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
Score = 30.5 bits (67), Expect = 0.29
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 122 CRAGAFSIDGQLCATGSVDASIKILDVDRM 151
+ + + ATGS D +I ++
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 68.7 bits (166), Expect = 1e-13
Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 16/164 (9%)
Query: 113 AYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVI 172
AY + P A++ D A + + I + +
Sbjct: 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS----------------GNKWVQV 44
Query: 173 RTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
L +H +VT +++ P + + + D+ ++ + + ++ + RC+ +
Sbjct: 45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104
Query: 233 PCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKC 276
P VG+ V+ + + K I V S
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD 148
Score = 59.1 bits (141), Expect = 2e-10
Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFS-KAHDGAEISSLTFTRNGKYLLSSGKDS 308
++ D + ++ I++ +K V K H+G ++ + + + +++ G D
Sbjct: 15 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ-VTGVDWAPDSNRIVTCGTDR 73
Query: 309 LVKLWE 314
+W
Sbjct: 74 NAYVWT 79
Score = 49.5 bits (116), Expect = 3e-07
Identities = 32/241 (13%), Positives = 65/241 (26%), Gaps = 27/241 (11%)
Query: 101 DPSAPEPAQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESS 160
+S + + + L A GS D +I + +
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT 182
Query: 161 EPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTI 220
+ ++ V + F + +A S D TV + D K +
Sbjct: 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 242
Query: 221 QESTFVRCLSFHPCGDYMVVGTDH---------------FVLRLYSSDGRIYCSGSKDGD 265
++F + G D F RL +
Sbjct: 243 TLPLL--AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER 300
Query: 266 IKIWDGVSSKCVATFS-----KAHDGAEISSLTFTRNGKY----LLSSGKDSLVKLWELS 316
+ D +S + + H + +S ++ GK ++G D + +W++
Sbjct: 301 FQNLDKKASSEGSAAAGAGLDSLHKNS-VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
Query: 317 S 317
S
Sbjct: 360 S 360
Score = 43.7 bits (101), Expect = 2e-05
Identities = 36/253 (14%), Positives = 78/253 (30%), Gaps = 38/253 (15%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQN----------- 164
H ++ D T D + + + K ++
Sbjct: 48 KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE 107
Query: 165 -------------------DQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKM 205
+ V L++HP++ +LA+GS D ++
Sbjct: 108 KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 167
Query: 206 FDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRL-YSSDGRIYCSGSKDG 264
F V + T + + +V + +S++G S D
Sbjct: 168 FSAYIKEVEERPAP----TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 223
Query: 265 DIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAY 324
+ + D + K +A + A + + ++TF L+++G D L+ SA +++
Sbjct: 224 TVCLAD--ADKKMAVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFTYDSAAGKLSF 280
Query: 325 TGAGSMGQQFELT 337
G + +Q
Sbjct: 281 GGRLDVPKQSSQR 293
Score = 36.4 bits (82), Expect = 0.004
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 289 ISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTGAG 328
IS + ++ + + V ++E S + + +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE 49
Score = 27.1 bits (58), Expect = 3.8
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 116 TSHKSPCRAGAFSIDGQLC----ATGSVDASIKILDVDRM 151
+ HK+ + G+ T +D + I DV +
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 67.9 bits (164), Expect = 2e-13
Identities = 24/199 (12%), Positives = 59/199 (29%), Gaps = 37/199 (18%)
Query: 150 RMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYS 209
R + + + D + + TL H V L+F + SGS D +++++D
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVE 205
Query: 210 KSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLY------------------- 250
+ Q T + +V G ++++
Sbjct: 206 TGNCIHTLTGHQSLTS----GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS 261
Query: 251 -----SSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDG---AEISSLTFTRNGKYLL 302
+ + S DG +K+WD + + + G + + +
Sbjct: 262 AVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA 321
Query: 303 SSGKD----SLVKLWELSS 317
++ + + + +
Sbjct: 322 VGSRNGTEETKLLVLDFDV 340
Score = 57.1 bits (136), Expect = 7e-10
Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 38/228 (16%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
H G +GS D ++K+ + + +RTL
Sbjct: 15 HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSA---------VTGKC---------LRTLVG 55
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCG-- 235
H V + + I S + V + + T G
Sbjct: 56 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115
Query: 236 DYMVVGTDH-------------FVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSK 282
D + D +R DGR SG+ D +K+WD + C+ T
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ- 174
Query: 283 AHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTGAGSM 330
G + +G +++S D+ +++W++ + C+ TG S+
Sbjct: 175 ---GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 219
Score = 46.7 bits (109), Expect = 2e-06
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 269 WDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
W K K HD I+ L F G ++S D+ +K+W + +CL G
Sbjct: 1 WRRGELKSPKVL-KGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVG 55
Score = 45.6 bits (106), Expect = 4e-06
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 241 GTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKY 300
G D V+ G SGS D +K+W V+ KC+ T H G + S N
Sbjct: 14 GHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGG-VWSSQMRDNIII 71
Score = 37.5 bits (85), Expect = 0.002
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 17/88 (19%)
Query: 127 FSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLE 186
+ T S D ++K+ D+ ++ + E V +
Sbjct: 266 LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG-------------SGGVVWRIR 312
Query: 187 FHPSAPILASGSKDKT----VKMFDYSK 210
+ + A GS++ T + + D+
Sbjct: 313 ASNTKLVCAVGSRNGTEETKLLVLDFDV 340
Score = 31.7 bits (70), Expect = 0.12
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 108 AQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDAS----IKILDVD 149
T S +CA GS + + + +LD D
Sbjct: 294 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 62.9 bits (151), Expect = 9e-12
Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
++ G+ + S KD + W + + + + S + + KY+++ D
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKYIVTGSGDKK 329
Query: 310 VKLWEL 315
++E+
Sbjct: 330 ATVYEV 335
Score = 57.1 bits (136), Expect = 8e-10
Identities = 40/295 (13%), Positives = 65/295 (22%), Gaps = 75/295 (25%)
Query: 96 FESDVDPSAPEPAQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKS 155
F D P +H A S + TG +K+ D+ KS
Sbjct: 28 FPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86
Query: 156 SMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDK-------------- 201
+ + + + P L G +
Sbjct: 87 PVSQ-------------LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 202 ---------TVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSS 252
S S + V L TD S+
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 253 DGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEIS---------------------- 290
DG +G D ++ WD + + +
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253
Query: 291 ----------------SLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTGAGS 329
SL F GK+ +S+GKD+L+ W + + S
Sbjct: 254 NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS 308
Score = 53.3 bits (126), Expect = 1e-08
Identities = 11/90 (12%), Positives = 26/90 (28%), Gaps = 19/90 (21%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
H+S + F+ G+ + D + G + ++
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP-----------------YGASIFQS--K 304
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFD 207
V + + +GS DK +++
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 40.6 bits (93), Expect = 2e-04
Identities = 13/84 (15%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 251 SSDGRIY-CSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
++DG++ D I ++ + T + H + ++T + +++ + GK
Sbjct: 18 TADGQMQPVPFPPDALIGPGIPRHARQINTLN--HGEV-VCAVTISNPTRHVYTGGKGC- 73
Query: 310 VKLWELSSARCLIAYTGAGSMGQQ 333
VK+W++S + + +
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRD 97
Score = 35.2 bits (79), Expect = 0.010
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 114 YVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDV 148
+ + S + S+D + TGS D + +V
Sbjct: 301 FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 60.2 bits (144), Expect = 7e-11
Identities = 20/137 (14%), Positives = 35/137 (25%), Gaps = 9/137 (6%)
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDY 237
+ A S D V + + R Y
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 238 MVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRN 297
V + +S + + DG I W+ + K + F+K + E S + +
Sbjct: 253 PVNSIE------FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSVVKIACS 303
Query: 298 GKYLLSSGKDSLVKLWE 314
L + D K
Sbjct: 304 DNILCLATSDDTFKTNA 320
Score = 55.6 bits (132), Expect = 3e-09
Identities = 8/76 (10%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 171 VIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSS-VRKAHKTIQESTFVRCL 229
+++ + ++ ++ PS +L S D ++ ++ + + ++++ + C
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 230 SFHPCGDYMVVGTDHF 245
+F D +
Sbjct: 63 NFIDNTDLQIYVGTVQ 78
Score = 54.1 bits (128), Expect = 7e-09
Identities = 14/130 (10%), Positives = 37/130 (28%), Gaps = 6/130 (4%)
Query: 126 AFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCL 185
+ + A S+D + + D + + + + V +
Sbjct: 201 LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN---LKDTNLAYPVNSI 257
Query: 186 EFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHF 245
EF P L + D + ++ RK K + + + + + T
Sbjct: 258 EFSPRHKFLYTAGSDGIISCWNLQT---RKKIKNFAKFNEDSVVKIACSDNILCLATSDD 314
Query: 246 VLRLYSSDGR 255
+ ++ +
Sbjct: 315 TFKTNAAIDQ 324
Score = 44.5 bits (103), Expect = 9e-06
Identities = 17/231 (7%), Positives = 46/231 (19%), Gaps = 46/231 (19%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
K L S D S+ + D Q + +
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFD---------------IQAKNVDLLQSLR 54
Query: 178 HIEEVTCLEFHPSAP-ILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
+ + C F + + G+ + D S +A + + + + +
Sbjct: 55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK 114
Query: 237 YM----------------------------VVGTDHFVLRLYSSDGRIYCSGSKDGDIKI 268
+ + ++ G + ++
Sbjct: 115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQW 174
Query: 269 WDGVSSKCVATFSKAHD--GAEISSLTFTRNGKYLLSSGKDSLVKLWELSS 317
+ + + + + S D V +
Sbjct: 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225
Score = 40.2 bits (92), Expect = 2e-04
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 282 KAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARC 320
+A IS + + LL + D + +++
Sbjct: 8 QAPKDY-ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK 45
Score = 40.2 bits (92), Expect = 2e-04
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHD-------------GAEISSLTFTR 296
+ Y S DG + + SK ++S+ F+
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261
Query: 297 NGKYLLSSGKDSLVKLWELSSARCLIAYTGAGS 329
K+L ++G D ++ W L + + + +
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE 294
Score = 37.9 bits (86), Expect = 0.001
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 19/105 (18%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL 175
T+ P + FS + T D I ++ I+
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ------------------TRKKIKNF 289
Query: 176 YDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTI 220
E + ++ S IL + D T K ++ +I
Sbjct: 290 AKF-NEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSI 333
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 59.1 bits (141), Expect = 2e-10
Identities = 28/201 (13%), Positives = 62/201 (30%), Gaps = 22/201 (10%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL 175
+ + S G + ATG + +++I ++ + ++
Sbjct: 181 MTPSQFATSVDISERGLI-ATGFNNGTVQISELSTL------------RPLYNFESQHSM 227
Query: 176 YDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCG 235
++ + ++F P +LA + ++ + ++ T S
Sbjct: 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 287
Query: 236 DYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGA---EISSL 292
V + ++ G CS DG ++ WD + + + T H E L
Sbjct: 288 HSSWVMSLS-----FNDSGETLCSAGWDGKLRFWDVKTKERITTL-NMHCDDIEIEEDIL 341
Query: 293 TFTRNGKYLLSSGKDSLVKLW 313
+G L G + L
Sbjct: 342 AVDEHGDSLAEPGVFDVKFLK 362
Score = 55.2 bits (131), Expect = 4e-09
Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 17/238 (7%)
Query: 116 TSHKSPCRAGAFSIDG-----QLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHP 170
K A + V + I +S+ + +
Sbjct: 116 DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG 175
Query: 171 VIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTF----V 226
+ + + T ++ ++A+G + TV++ + S ++ +
Sbjct: 176 TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234
Query: 227 RCLSFHPCGDYMVVGT-DHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHD 285
R + F P G + + + + + I + A+ +
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE------RIGSLSVPTHSSQASLGEFAH 288
Query: 286 GAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTGAGSMGQQFELTLTVDAD 343
+ + SL+F +G+ L S+G D ++ W++ + + + E L VD
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 346
Score = 54.9 bits (130), Expect = 5e-09
Identities = 21/213 (9%), Positives = 61/213 (28%), Gaps = 32/213 (15%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
H + + + + S D +K+ D +++ P++ H V ++
Sbjct: 13 HDADIFSVSAC--NSFTVSCSGDGYLKVWDN------KLLDNENPKDKSYSHFVHKSGLH 64
Query: 178 HIEEVTCLEF-HPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
H++ + +E ++A+ S + + ++ + K I E +
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITRED--ETKKVIFEKLDLLDSDMKKHSF 122
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAH------------ 284
+ + + + G IW + +
Sbjct: 123 WAL----KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 178
Query: 285 ----DGAEISSLTFTRNGKYLLSSGKDSLVKLW 313
+S+ + G + + + V++
Sbjct: 179 SPMTPSQFATSVDISERG-LIATGFNNGTVQIS 210
Score = 54.9 bits (130), Expect = 5e-09
Identities = 18/153 (11%), Positives = 38/153 (24%), Gaps = 23/153 (15%)
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDY 237
H ++ + S S D +K++D S FV H
Sbjct: 13 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSY-SHFVHKSGLHHVDVL 69
Query: 238 MVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHD--------GAEI 289
+ D F + + + S GD+ +
Sbjct: 70 QAIERDAF-------ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 290 SSLTFTRNG-----KYLLSSGKDSLVKLWELSS 317
+L + + L+++ +W+
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155
Score = 35.6 bits (80), Expect = 0.008
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 278 ATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARC 320
A KAHD +I S++ + +S D +K+W+
Sbjct: 7 ANAGKAHDA-DIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDN 46
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 58.8 bits (140), Expect = 2e-10
Identities = 18/111 (16%), Positives = 30/111 (27%), Gaps = 1/111 (0%)
Query: 205 MFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDG 264
++ + + F V + +S DG S S D
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260
Query: 265 DIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWEL 315
IKIW+ + K T E L + L+S + +
Sbjct: 261 TIKIWNVATLKVEKTI-PVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
Score = 48.7 bits (114), Expect = 4e-07
Identities = 34/219 (15%), Positives = 63/219 (28%), Gaps = 13/219 (5%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESS---EPQNDQQGHPVI 172
T H S G CA+G V +++I D + P D
Sbjct: 55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES 114
Query: 173 RTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFH 232
+ + E S S I + ++
Sbjct: 115 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 174
Query: 233 PCGDYMVVGTDHF-----VLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAH--- 284
+ T Y+ DG ++ S DG I +++GV F
Sbjct: 175 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 234
Query: 285 --DGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCL 321
+ LT++ +G + S+ D +K+W +++ +
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273
Score = 48.4 bits (113), Expect = 5e-07
Identities = 19/114 (16%), Positives = 31/114 (27%), Gaps = 20/114 (17%)
Query: 157 MESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKA 216
+ H V L + P +AS S DKT+K+++ + V K
Sbjct: 216 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 275
Query: 217 HKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
+ L +V S S +G I +
Sbjct: 276 IPVGTRIE-DQQLGIIWTKQALV-------------------SISANGFINFVN 309
Score = 48.0 bits (112), Expect = 7e-07
Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 19/113 (16%)
Query: 126 AFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCL 185
+ G + S+ + V + +H + T
Sbjct: 24 GNTPAGDKIQYCN-GTSVYTVPVGSLT------------------DTEIYTEHSHQTTVA 64
Query: 186 EFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYM 238
+ PS ASG V+++D ++++ S V+ +S+ +
Sbjct: 65 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117
Score = 38.7 bits (88), Expect = 6e-04
Identities = 13/108 (12%), Positives = 26/108 (24%), Gaps = 22/108 (20%)
Query: 226 VRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHD 285
L P GD + + S ++ H
Sbjct: 20 AVVLGNTPAGDKIQYCN--------------------GTSVYTVPVGSLTDTEIYT-EHS 58
Query: 286 GAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTGAGSMGQQ 333
+ + +G Y S V++W+ + ++ T G
Sbjct: 59 HQ-TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV 105
Score = 27.9 bits (60), Expect = 1.9
Identities = 3/34 (8%), Positives = 10/34 (29%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVD 149
+ + Q + S + I ++ +
Sbjct: 278 VGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 58.4 bits (139), Expect = 2e-10
Identities = 22/138 (15%), Positives = 41/138 (29%), Gaps = 2/138 (1%)
Query: 176 YDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCG 235
D + P S S +T + +E R
Sbjct: 149 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI 208
Query: 236 DYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFT 295
+ + + + +GS D +I I+ + AH +++L +
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG-VNNLLWE 267
Query: 296 RNGKYLLSSGKDSLVKLW 313
L+SSG D+ +K W
Sbjct: 268 TPST-LVSSGADACIKRW 284
Score = 50.7 bits (119), Expect = 8e-08
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 168 GHP-VIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFV 226
GH V++T+ H + +T L +P L SGS D + + SS+ + H S +
Sbjct: 1 GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSS--SSMHQDH-----SNLI 49
Query: 227 RCLSFHPCGDYMVVGTDHF 245
L +Y + D
Sbjct: 50 VSLDNSKAQEYSSISWDDT 68
Score = 50.0 bits (117), Expect = 1e-07
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 18/90 (20%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
+ A I+ L ATGS+D +I I V R +I+ L
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR-----------------PMKIIKALNA 256
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFD 207
H + V L + + L S D +K ++
Sbjct: 257 HKDGVNNLLWETPS-TLVSSGADACIKRWN 285
Score = 39.9 bits (91), Expect = 2e-04
Identities = 16/113 (14%), Positives = 27/113 (23%), Gaps = 29/113 (25%)
Query: 162 PQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSS----VRKAH 217
I + E E ++A+GS D + ++ + AH
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 257
Query: 218 KTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
V L + + S D IK W+
Sbjct: 258 -----KDGVNNLLWET-------------------PSTL-VSSGADACIKRWN 285
Score = 32.6 bits (72), Expect = 0.054
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 14/67 (20%)
Query: 241 GTDHFVLRLYSSDGRIYC-------SGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLT 293
G D + + + I SGS DG I W ++ + H I SL
Sbjct: 1 GHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWS------SSSMHQDHSNL-IVSLD 53
Query: 294 FTRNGKY 300
++ +Y
Sbjct: 54 NSKAQEY 60
Score = 32.2 bits (71), Expect = 0.076
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 275 KCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARC 320
+ + T H+ I++LT L+S D + W SS
Sbjct: 4 EVLKTI-SGHNKG-ITALTVNP----LISGSYDGRIMEWSSSSMHQ 43
Score = 31.1 bits (68), Expect = 0.17
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDV 148
HK + L + DA IK +V
Sbjct: 257 HKDGVNNLLWETPSTL-VSSGADACIKRWNV 286
Score = 26.8 bits (57), Expect = 3.7
Identities = 13/128 (10%), Positives = 25/128 (19%), Gaps = 37/128 (28%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
H A + +GS D I D
Sbjct: 12 HNKGITALTVNP----LISGSYDGRIMEWSSS-----------------------SMHQD 44
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDY 237
H + L+ + + + + + + S + G
Sbjct: 45 HSNLIVSLDNSK----------AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFT 94
Query: 238 MVVGTDHF 245
V+ D
Sbjct: 95 AVLTNDDD 102
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 58.7 bits (140), Expect = 3e-10
Identities = 23/204 (11%), Positives = 47/204 (23%), Gaps = 31/204 (15%)
Query: 114 YVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIR 173
T+ S A AF D + S + D + +
Sbjct: 173 AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL-----------NFSFEVVSKPF 221
Query: 174 TLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHP 233
+ + P + +G D S +V R +
Sbjct: 222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD--------YRMIIPLE 273
Query: 234 CGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLT 293
+ H Y + G + +D + K ++ L
Sbjct: 274 SSILIYSVPVH------GEFAAYYQGAPEKGVLLKYDVKTRKV-----TEVKN-NLTDLR 321
Query: 294 FTRNGKYLLSSGKDSLVKLWELSS 317
+ + K ++ D + + L
Sbjct: 322 LSADRKTVMVRKDDGKIYTFPLEK 345
Score = 49.1 bits (115), Expect = 3e-07
Identities = 17/167 (10%), Positives = 29/167 (17%), Gaps = 36/167 (21%)
Query: 115 VTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRT 174
+ G L SS D + +I
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEY-----------DLNDMYKRSSPINVDPGDYRMIIP 271
Query: 175 LYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPC 234
L I + A + + +D K + + L
Sbjct: 272 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT------RKVTEVKNNLTDLRLSA- 324
Query: 235 GDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFS 281
D + DG I + + T
Sbjct: 325 ------------------DRKTVMVRKDDGKIYTFPLEKPEDERTVE 353
Score = 35.6 bits (80), Expect = 0.007
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 111 ETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDR 150
+T VT K+ S D + D I +++
Sbjct: 306 KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
Score = 31.4 bits (69), Expect = 0.17
Identities = 13/208 (6%), Positives = 28/208 (13%), Gaps = 18/208 (8%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVD--ASIKILDVDRMLAKSSMESS-----------EP 162
R D ++ + I D A+ E+
Sbjct: 39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGK 98
Query: 163 QNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQE 222
D + ++ + + Y
Sbjct: 99 FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158
Query: 223 STFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSK 282
H + +D + S D V
Sbjct: 159 QAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS 218
Query: 283 -----AHDGAEISSLTFTRNGKYLLSSG 305
+ +
Sbjct: 219 KPFVIPLIPGSPNPTKLVPRSMTSEAGE 246
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 57.1 bits (136), Expect = 8e-10
Identities = 11/211 (5%), Positives = 41/211 (19%), Gaps = 31/211 (14%)
Query: 126 AFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL-YDHIEEVTC 184
A + + ++ ++DV V ++
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVAS------------------DTVYKSCVMPDKFGPGT 44
Query: 185 LEFHP-SAPILASGSKDKTVKMFDYSKSSVRK----AHKTIQESTFVRCLSFHPCGDYMV 239
P + + + D + + + + P G +
Sbjct: 45 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY 104
Query: 240 VGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGK 299
+ + K ++++ ++ + +G
Sbjct: 105 ATVN-------PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157
Query: 300 YLLSSGKDSLVKLWELSSARCLIAYTGAGSM 330
++ + + L
Sbjct: 158 LYVAGPDIYKMDVKTGKYTVALPLRNWNRKG 188
Score = 49.0 bits (115), Expect = 3e-07
Identities = 13/145 (8%), Positives = 30/145 (20%), Gaps = 24/145 (16%)
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
+ T F A+ D + P
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-DLTELYFTGLRSPKDP 264
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTR 296
+ G + + +D K + + H + F +
Sbjct: 265 NQIYGVLN--------------------RLAKYDLKQRKLIKAANLDHT---YYCVAFDK 301
Query: 297 NGKYLLSSGKDSLVKLWELSSARCL 321
G L G + + ++ + +
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKV 326
Score = 48.2 bits (113), Expect = 6e-07
Identities = 5/83 (6%), Positives = 20/83 (24%), Gaps = 2/83 (2%)
Query: 251 SSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSG-KDSL 309
+ + ++ + D S + D + + +
Sbjct: 5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSC-VMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 310 VKLWELSSARCLIAYTGAGSMGQ 332
+ +L + + + G+
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGE 86
Score = 47.0 bits (110), Expect = 2e-06
Identities = 27/183 (14%), Positives = 46/183 (25%), Gaps = 45/183 (24%)
Query: 117 SHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLY 176
F D Q AT + +D+ + G +
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLSVDL-----------------KTGKTHTQEFA 248
Query: 177 DHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGD 236
D E P P G + +D + RK K C++F
Sbjct: 249 DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ---RKLIKAANLDHTYYCVAFDK--- 301
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLT--- 293
G G D+ +++ + + V G ++S+ T
Sbjct: 302 ----------------KGDKLYLGGTFNDLAVFNPDTLEKVKNIK--LPGGDMSTTTPQV 343
Query: 294 FTR 296
F R
Sbjct: 344 FIR 346
Score = 35.1 bits (79), Expect = 0.011
Identities = 9/121 (7%), Positives = 25/121 (20%)
Query: 29 YYDGHHPMAITLQSSCNVVEPCPPSDRLSQLVHIGLAHEPDRMKRMEPSIGLNPIQEILI 88
H + + + P + L + + +
Sbjct: 201 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS 260
Query: 89 GPGLDLEFESDVDPSAPEPAQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDV 148
+ + + + Q + + AF G G + + +
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 320
Query: 149 D 149
D
Sbjct: 321 D 321
Score = 28.2 bits (61), Expect = 1.4
Identities = 2/30 (6%), Positives = 12/30 (40%)
Query: 292 LTFTRNGKYLLSSGKDSLVKLWELSSARCL 321
+Y++ + + + + +++S
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVY 31
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 55.2 bits (131), Expect = 2e-09
Identities = 29/201 (14%), Positives = 63/201 (31%), Gaps = 4/201 (1%)
Query: 126 AFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCL 185
D Q +G D +IKI D + + K + + + + +
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 79
Query: 186 EFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHF 245
+ +L + + + + + S V+
Sbjct: 80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 139
Query: 246 VLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSG 305
+ + D + S S D IK+W+ + + V T +G + + ++S
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL----NGHKRGIACLQYRDRLVVSGS 195
Query: 306 KDSLVKLWELSSARCLIAYTG 326
D+ ++LW++ CL G
Sbjct: 196 SDNTIRLWDIECGACLRVLEG 216
Score = 53.3 bits (126), Expect = 1e-08
Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 36/167 (21%)
Query: 156 SMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRK 215
S + + + +RTL H + CL++ ++ SGS D T++++D
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIEC----- 207
Query: 216 AHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSK 275
++ L D + SG+ DG IK+WD V++
Sbjct: 208 -GACLRVLEGHEELVRCIRFDNKRI-----------------VSGAYDGKIKVWDLVAAL 249
Query: 276 CVATFS--------KAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWE 314
+ H G + L F + ++SS D + +W+
Sbjct: 250 DPRAPAGTLCLRTLVEHSGR-VFRLQF--DEFQIVSSSHDDTILIWD 293
Score = 42.9 bits (99), Expect = 3e-05
Identities = 30/155 (19%), Positives = 47/155 (30%), Gaps = 34/155 (21%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL 175
T + +L +GS D +I++ D++ +E E R
Sbjct: 173 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-- 230
Query: 176 YDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCG 235
+ SG+ D +K++D + +A +R L H
Sbjct: 231 ------------------IVSGAYDGKIKVWDLVAALDPRAPAGTL---CLRTLVEH--- 266
Query: 236 DYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
V RL D S S D I IWD
Sbjct: 267 -------SGRVFRL-QFDEFQIVSSSHDDTILIWD 293
Score = 38.7 bits (88), Expect = 7e-04
Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 275 KCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ + S+ G + L + + + ++S +D+ +K+W+ ++ C TG
Sbjct: 6 QRIHCRSETSKG--VYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTG 53
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 53.5 bits (126), Expect = 9e-09
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 1/88 (1%)
Query: 171 VIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLS 230
+ + Y H + +T L L S + + +D S + + + + +
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT-MITGIK 62
Query: 231 FHPCGDYMVVGTDHFVLRLYSSDGRIYC 258
GD V D + + + +
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDS 90
Score = 53.5 bits (126), Expect = 1e-08
Identities = 15/86 (17%), Positives = 28/86 (32%)
Query: 231 FHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEIS 290
+ T +S D +GS D + +W+ K
Sbjct: 213 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSV 272
Query: 291 SLTFTRNGKYLLSSGKDSLVKLWELS 316
+ N ++S+G+DS +K W +
Sbjct: 273 NSVIWLNETTIVSAGQDSNIKFWNVP 298
Score = 46.9 bits (109), Expect = 2e-06
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSL 309
S+DG+ S +G I WD + F H I+ + T L + D
Sbjct: 20 SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM-ITGIKTTSK-GDLFTVSWDDH 77
Query: 310 VKLWELSSARC 320
+K+ +
Sbjct: 78 LKVVPAGGSGV 88
Score = 44.2 bits (102), Expect = 9e-06
Identities = 16/127 (12%), Positives = 29/127 (22%), Gaps = 17/127 (13%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
H A + S DG+ + + I D+ G
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDI-----------------STGISNRVFPDV 53
Query: 178 HIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDY 237
H +T ++ + D + + S+ L+ GD
Sbjct: 54 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDI 113
Query: 238 MVVGTDH 244
V
Sbjct: 114 AVAACYK 120
Score = 42.7 bits (98), Expect = 3e-05
Identities = 10/46 (21%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 284 HDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTGAGS 329
H+ A I++L+ + +GK L S+ + + W++S+ + +
Sbjct: 11 HNKA-ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA 55
Score = 41.5 bits (95), Expect = 8e-05
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 19/95 (20%)
Query: 176 YDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCG 235
H +V C+ + P LA+GS D +V +++ + + + +
Sbjct: 221 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWN------------MNKPSDHPIIIKGA-- 266
Query: 236 DYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWD 270
V + + S +D +IK W+
Sbjct: 267 -----HAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 38.8 bits (88), Expect = 6e-04
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 16/76 (21%)
Query: 134 CATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPI 193
ATGS+D S+ + +++ HP+I + V + +
Sbjct: 239 LATGSLDNSVIVWNMN---------------KPSDHPIIIKGAHAMSSVNSVIWLNE-TT 282
Query: 194 LASGSKDKTVKMFDYS 209
+ S +D +K ++
Sbjct: 283 IVSAGQDSNIKFWNVP 298
Score = 31.9 bits (70), Expect = 0.11
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 107 PAQYETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDV 148
P+ + +H ++ + D++IK +V
Sbjct: 256 PSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 53.4 bits (126), Expect = 1e-08
Identities = 26/186 (13%), Positives = 53/186 (28%), Gaps = 3/186 (1%)
Query: 131 GQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPS 190
G + +GS D ++ + DV +M + + + R T +
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230
Query: 191 APILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLY 250
+ + + S + + + + + T+ + +
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290
Query: 251 SSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLV 310
I SGS + I++ S K V I S+ F + + KD
Sbjct: 291 YVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQ-IWSVNFKGKT-LVAAVEKDGQS 347
Query: 311 KLWELS 316
L L
Sbjct: 348 FLEILD 353
Score = 50.7 bits (119), Expect = 9e-08
Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 19/195 (9%)
Query: 126 AFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCL 185
+ TG+ D I++ D + L H V L
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINK------------------KFLLQLSGHDGGVWAL 59
Query: 186 EFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHF 245
++ IL SGS D+TV+++D K + + + + Y+V G+
Sbjct: 60 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 246 VLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSG 305
L ++ + + + F G S T + +G ++S
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178
Query: 306 KDSLVKLWELSSARC 320
D+ + +W+++ +C
Sbjct: 179 YDNTLIVWDVAQMKC 193
Score = 47.6 bits (111), Expect = 1e-06
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 246 VLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSG 305
V+ + +G+ D I+++D ++ K + HDG + +L + G + S
Sbjct: 15 VITCLQFEDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGG-VWALKYAHGGILVSGST 72
Score = 44.5 bits (103), Expect = 9e-06
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 21/86 (24%)
Query: 126 AFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCL 185
F + + +GS + I ++ + G V + +++ +
Sbjct: 289 TFYVSDNILVSGS-ENQFNIYNL-----------------RSGKLVHANILKDADQIWSV 330
Query: 186 EFHPSAPILASGSKDKTVKM--FDYS 209
F ++A+ KD + D+S
Sbjct: 331 NFKGKT-LVAAVEKDGQSFLEILDFS 355
Score = 41.0 bits (94), Expect = 1e-04
Identities = 8/45 (17%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 282 KAHDGAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
+ H + I+ L F Y+++ D ++++++ + + L+ +G
Sbjct: 9 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSG 51
Score = 37.2 bits (84), Expect = 0.002
Identities = 27/211 (12%), Positives = 68/211 (32%), Gaps = 24/211 (11%)
Query: 132 QLCATGSVDASIKILDVDRM-----LAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLE 186
+ TGS D ++ + + + + ++ + L H+ V +
Sbjct: 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168
Query: 187 FHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFV 246
H I+ SGS D T+ ++D ++ + + H + D +
Sbjct: 169 GHG--NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCISASMDTTI 225
Query: 247 LRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVAT----------------FSKAHDGAEIS 290
+G + + + +S K + + ++ +S
Sbjct: 226 RIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS 285
Query: 291 SLTFTRNGKYLLSSGKDSLVKLWELSSARCL 321
++T +L SG ++ ++ L S + +
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGKLV 316
Score = 32.9 bits (73), Expect = 0.047
Identities = 28/169 (16%), Positives = 52/169 (30%), Gaps = 17/169 (10%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTL 175
+ H A ++ G L +GS + + +
Sbjct: 50 SGHDGGVWALKYAHGGIL-VSGS----------------TDRTVRVWDIKKGCCTHVFEG 92
Query: 176 YDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCG 235
++ + + + + +GS+D T+ ++ K S H + V
Sbjct: 93 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 152
Query: 236 DYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAH 284
V+ +R S G I SGS D + +WD KC+ S
Sbjct: 153 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 201
Score = 25.6 bits (54), Expect = 9.7
Identities = 6/37 (16%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 113 AYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVD 149
A + + F L A D + +D
Sbjct: 318 ANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILD 353
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 52.6 bits (124), Expect = 2e-08
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 228 CLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGA 287
F + + L D + + + D I++WD +SKCV ++
Sbjct: 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL 296
Query: 288 EISSLTFTRNG-KYLLSSGKDSLVKLWEL 315
+ G ++S D + +EL
Sbjct: 297 GNQQVGVVATGNGRIISLSLDGTLNFYEL 325
Score = 48.0 bits (112), Expect = 8e-07
Identities = 14/133 (10%), Positives = 39/133 (29%), Gaps = 18/133 (13%)
Query: 138 SVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASG 197
V+ S + + S + I + ++ + A+
Sbjct: 210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATV 269
Query: 198 SKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIY 257
D T++++D + S + ++ + + G+ ++
Sbjct: 270 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII----------------- 312
Query: 258 CSGSKDGDIKIWD 270
S S DG + ++
Sbjct: 313 -SLSLDGTLNFYE 324
Score = 43.0 bits (99), Expect = 3e-05
Identities = 23/298 (7%), Positives = 67/298 (22%), Gaps = 42/298 (14%)
Query: 77 SIGLNPIQEILIGPGLDLEFESDVDPSAPEPAQYETAYVTSHKSPCRAGAFS--IDGQLC 134
+ +P + P F +D + + S FS Q
Sbjct: 22 HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQ-FTGHGSSVVTTVKFSPIKGSQYL 80
Query: 135 ATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPIL 194
+G + + + + +++ V ++ + + L
Sbjct: 81 CSGDESGKVIV----------WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130
Query: 195 ASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDG 254
+ + S S + S + + ++
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190
Query: 255 RIYCSGSKDGDIKIWDGVSS-----------------------------KCVATFSKAHD 285
S S K V
Sbjct: 191 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 250
Query: 286 GAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTGAGSMGQQFELTLTVDAD 343
+ + + G D+ +++W++++++C+ +T ++ + +
Sbjct: 251 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 308
Score = 41.8 bits (96), Expect = 7e-05
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 25/127 (19%)
Query: 182 VTCLEFHPSAPILASGSKDKT-VKMFDYSKSSVRKAHKTIQESTF-VRCLSFHPCGDYMV 239
T L + P+ +A V+ D S V + + V + F P
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK---- 75
Query: 240 VGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDG------AEISSLT 293
+ CSG + G + +W K + IS ++
Sbjct: 76 -------------GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDIS 122
Query: 294 FTRNGKY 300
+ G+
Sbjct: 123 WDFEGRR 129
Score = 36.0 bits (81), Expect = 0.005
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 17/91 (18%)
Query: 118 HKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYD 177
+D Q AT DA+I++ DV +S+
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDV---------TTSKCVQKWTLDK------- 293
Query: 178 HIEEVTCLEFHPSA-PILASGSKDKTVKMFD 207
+ + + S S D T+ ++
Sbjct: 294 QQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 48.6 bits (114), Expect = 4e-07
Identities = 22/285 (7%), Positives = 59/285 (20%), Gaps = 36/285 (12%)
Query: 58 QLVHIGLAHEPDRMKRMEPSIGLNPIQEILIGPGLDLEFESDVDP------SAPEPAQYE 111
+ + P+ + L+P + L + E + +
Sbjct: 67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS 126
Query: 112 TAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILD---VDRMLAKSSMESSEPQNDQQG 168
A++ DG D + + + S E+
Sbjct: 127 RRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL 186
Query: 169 HPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRC 228
+ + + + D + + F
Sbjct: 187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-AMREVRIMDVFYFS 245
Query: 229 LSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAE 288
+ +P ++ +D + + H
Sbjct: 246 TAVNPAKTRAFG---------------------AYNVLESFDLEKNASIKRVPLPH---S 281
Query: 289 ISSLTFTRNGKYLLSSGKDSLVKLWELSSARCL--IAYTGAGSMG 331
S+ + +G + G + ++ + + G SM
Sbjct: 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMS 326
Score = 47.9 bits (112), Expect = 7e-07
Identities = 7/73 (9%), Positives = 20/73 (27%), Gaps = 1/73 (1%)
Query: 259 SGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSG-KDSLVKLWELSS 317
+ ++ + + D + A G G+ ++ K + +L +
Sbjct: 6 APARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT 65
Query: 318 ARCLIAYTGAGSM 330
L +
Sbjct: 66 GETLGRIDLSTPE 78
Score = 47.1 bits (110), Expect = 1e-06
Identities = 27/239 (11%), Positives = 58/239 (24%), Gaps = 27/239 (11%)
Query: 60 VHIGLAHEPDRMKRMEPSIGLNPIQEILIGPGLDLEFESDVDPSAPEPAQYETAYVTSHK 119
+ R + L G G DL + E ++ ++
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181
Query: 120 SPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHI 179
P A + + D+D + + + G +R +
Sbjct: 182 QPDVL-AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240
Query: 180 EEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMV 239
+P+ ++ FD K + K + ++ G +
Sbjct: 241 VFYFSTAVNPAKTRAFG--AYNVLESFDLEK---NASIKRVPLPHSYYSVNVSTDGSTVW 295
Query: 240 VGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDG--AEISSLTFTR 296
+G GD+ +D + + + + S FTR
Sbjct: 296 LG-------------------GALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335
Score = 40.9 bits (94), Expect = 1e-04
Identities = 13/123 (10%), Positives = 32/123 (26%), Gaps = 21/123 (17%)
Query: 194 LASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSD 253
+ + ++ + + D K +V K P G
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYA------------- 50
Query: 254 GRIYCSGSKDGDIKIWDGVSSKCVATF---SKAHDGAEISSLTFTRNGKYLLSSGKDSLV 310
+ +K + D V+ + + + + + +GK L +
Sbjct: 51 -----TVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRL 105
Query: 311 KLW 313
+L
Sbjct: 106 ELT 108
Score = 31.7 bits (70), Expect = 0.11
Identities = 20/183 (10%), Positives = 49/183 (26%), Gaps = 30/183 (16%)
Query: 135 ATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPS-API 193
+ + ++D ++M + T+ D P
Sbjct: 5 LAPARPDKLVVIDTEKMAVDKVI----------------TIADAGPTPMVPMVAPGGRIA 48
Query: 194 LASGSKDKTVKMFDYSKSSVRK---AHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLY 250
A+ +K +++ D + + + P G + +
Sbjct: 49 YATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE-------S 101
Query: 251 SSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLV 310
+ + + ++D + F +I+ L + R+G L G+D V
Sbjct: 102 PVRLELTHFEVQPTRVALYDAETLSRRKAF---EAPRQITMLAWARDGSKLYGLGRDLHV 158
Query: 311 KLW 313
Sbjct: 159 MDP 161
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 46.7 bits (110), Expect = 2e-06
Identities = 20/224 (8%), Positives = 51/224 (22%), Gaps = 25/224 (11%)
Query: 111 ETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHP 170
+ + + S G+ D + ++D+ +
Sbjct: 54 IKTVLDTGYAV-HISRLSASGRYLFVIGRDGKVNMIDLW-------------MKEPTTVA 99
Query: 171 VIRTLYDHIEEVTCLEFHP-SAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCL 229
I+ + T +A + D +K
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS--TRGMTYDEQ 157
Query: 230 SFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEI 289
+HP + H+ + + G I + D + T + +
Sbjct: 158 EYHPEPRVAAILASHY-------RPEFIVNVKETGKILLVDYTDLNNLKTT-EISAERFL 209
Query: 290 SSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTGAGSMGQQ 333
+ +Y +++ + + L+A G
Sbjct: 210 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH 253
Score = 30.1 bits (67), Expect = 0.36
Identities = 28/239 (11%), Positives = 60/239 (25%), Gaps = 39/239 (16%)
Query: 99 DVDPSAPEPAQYETAYVTSHKSPCRAGAFSIDGQLCA---------------TGSVDASI 143
D P A + SH P G++
Sbjct: 153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG 212
Query: 144 KILDVDRMLAKSSMESSEPQNDQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTV 203
+ R ++ ++ + + D + + G T
Sbjct: 213 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS 272
Query: 204 KMFDYSKSSVRKAHKTIQESTF------------VRCLSFHPCGDYMVV-GTDHFVLRLY 250
M D S + + + ++ + + HP Y+ V T + +
Sbjct: 273 HMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEIS 332
Query: 251 SS----DGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDG-AEISSLTFTRNGKYLLSS 304
S D + D + K +A ++ +G + F ++G + S
Sbjct: 333 GSVAVFDIKAMTGDGSDPEFKTLP------IAEWAGITEGQPRVVQGEFNKDGTEVWFS 385
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 45.2 bits (105), Expect = 6e-06
Identities = 6/67 (8%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 256 IYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDS-LVKLWE 314
+Y + + I +W+ + ++ + + + +YL + V +
Sbjct: 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65
Query: 315 LSSARCL 321
++
Sbjct: 66 IAPDDGA 72
Score = 40.6 bits (93), Expect = 2e-04
Identities = 7/109 (6%), Positives = 31/109 (28%), Gaps = 19/109 (17%)
Query: 193 ILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSS 252
+ + + + + +++ + + + V+ + P Y
Sbjct: 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRY--------------- 50
Query: 253 DGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHD-GAEISSLTFTRNGKY 300
+Y + + + TF+ ++ ++ G++
Sbjct: 51 ---LYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQF 96
Score = 30.2 bits (66), Expect = 0.34
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 248 RLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHD-GAEISSLTFTRNGKYLLSSGK 306
+ +Y I ++ V + + +GKYL+++G+
Sbjct: 236 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ 295
Query: 307 DS-LVKLWELSSARCLIAYTG 326
S + ++E+ + L+ G
Sbjct: 296 KSHHISVYEIVGEQGLLHEKG 316
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 37.9 bits (86), Expect = 0.001
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 250 YSSDG-RIYCSGSKDGDIKIWDGVSSKCVATFS 281
+ DG ++Y + S + + D ++ AT +
Sbjct: 251 VTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283
Score = 33.3 bits (74), Expect = 0.033
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 21/90 (23%)
Query: 196 SGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSDGR 255
+ S+ + + D + + V TI + P G + V
Sbjct: 7 ANSESDNISVIDVTSNKVTA---TIPVGSNPMGAVISPDGTKVYV--------------- 48
Query: 256 IYCSGSKDGDIKIWDGVSSKCVATFSKAHD 285
+ + D+ I D ++ +AT
Sbjct: 49 ---ANAHSNDVSIIDTATNNVIATVPAGSS 75
Score = 29.8 bits (65), Expect = 0.48
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 111 ETAYVTSHKSPCRAGAFSIDGQ-LCATGSVDASIKILDVD 149
TA + P A + DG+ + S ++ ++D
Sbjct: 236 ITARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTA 274
Score = 27.5 bits (59), Expect = 2.3
Identities = 5/46 (10%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 171 VIRTLYDHIEEVTCLEFHP-SAPILASGSKDKTVKMFDYSKSSVRK 215
+ + + + P + + S TV + D + +++
Sbjct: 236 ITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 34.2 bits (77), Expect = 0.018
Identities = 13/131 (9%), Positives = 27/131 (20%), Gaps = 18/131 (13%)
Query: 194 LASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLRLYSSD 253
A G + V++FD + P VG ++ +S
Sbjct: 89 SAKGKRTDYVEVFD-------------PVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135
Query: 254 GRIYCSGSKDGDIKIWDGVSSKCVATFSKAHD-----GAEISSLTFTRNGKYLLSSGKDS 308
+ + A GA + + S +
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA 195
Query: 309 LVKLWELSSAR 319
+ +
Sbjct: 196 PAAAGIVGAQC 206
Score = 30.7 bits (68), Expect = 0.23
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 6/90 (6%)
Query: 238 MVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEIS-----SL 292
V G L S+ G + ++++D V+ +A +
Sbjct: 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII 129
Query: 293 TFTRNGKYLL-SSGKDSLVKLWELSSARCL 321
+ LL S + A
Sbjct: 130 GNCASSACLLFFLFGSSAAAGLSVPGASDD 159
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 34.2 bits (77), Expect = 0.019
Identities = 22/221 (9%), Positives = 54/221 (24%), Gaps = 25/221 (11%)
Query: 111 ETAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLAKSSMESSEPQNDQQGHP 170
+ + + S G+ DA I ++D+ +
Sbjct: 54 IVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWAK-------------EPTKVA 99
Query: 171 VIRTLYDHIEEVTCLEFHPSAPILASGS-KDKTVKMFDYSKSSVRKAHKTIQESTFVRCL 229
I+ + + +G+ + D + V
Sbjct: 100 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK--QIVSTRGMTVDTQ 157
Query: 230 SFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEI 289
++HP + H + + K+ + T + +
Sbjct: 158 TYHPEPRVAAIIASH--------EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL 209
Query: 290 SSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTGAGSM 330
+ + + +Y +++ +S S R L A G
Sbjct: 210 ADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT 250
Score = 28.0 bits (61), Expect = 2.0
Identities = 16/146 (10%), Positives = 29/146 (19%), Gaps = 25/146 (17%)
Query: 189 PSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHFVLR 248
+ + + D + K I V G Y++V
Sbjct: 30 LPNLFSVTLRDAGQIALVDGDSKKIVK---VIDTGYAVHISRMSASGRYLLVI------- 79
Query: 249 LYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFS-KAHDGAE--ISSLTFTRNGKYLLSSG 305
+D I + D + + K A SS +Y ++
Sbjct: 80 ------------GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127
Query: 306 KDSLVKLWELSSARCLIAYTGAGSMG 331
M
Sbjct: 128 YWPPQFAIMDGETLEPKQIVSTRGMT 153
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 31.4 bits (71), Expect = 0.16
Identities = 22/158 (13%), Positives = 40/158 (25%), Gaps = 25/158 (15%)
Query: 165 DQQGHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSVRKAHKTIQEST 224
+ R + +A+G TV + K K T
Sbjct: 244 GRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDT 303
Query: 225 FVRCLSFHPCGDYMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKA- 283
V P + T + G Y + D + W+ + +
Sbjct: 304 IV----AEPELGLGPLHTT------FDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVN 353
Query: 284 -------------HDGAEISSLTFTRNGKYLLSSGKDS 308
H+ A + + +GK+L+ K S
Sbjct: 354 YIRQKLDVQYQPGHNHA-SLTESRDADGKWLVVLSKFS 390
Score = 30.6 bits (69), Expect = 0.27
Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 15/101 (14%)
Query: 237 YMVVGTDHFVLRLYSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHD----------- 285
Y+ V + L +G + + K F +
Sbjct: 253 YIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIA--IDKLDDLFEDKIELRDTIVAEPEL 310
Query: 286 GAEISSLTFTRNGKYLLSSGKDSLVKLWELSSARCLIAYTG 326
G TF G + DS V W ++ A Y G
Sbjct: 311 GLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIK--HYNG 349
Score = 29.9 bits (67), Expect = 0.50
Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 28/147 (19%)
Query: 112 TAYVTSHKSPCRAGAFSIDGQLCATGSVDASIKILDVDRMLA----KSSMESSEPQNDQQ 167
T Y+ K+P A G + ++ ++ +D++ K + +
Sbjct: 251 TRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDT-----IV 305
Query: 168 GHPVIRTLYDHIEEVTCLEFHPSAPILASGSKDKTVKMFDYSKSSV----RKAHKTIQ-- 221
P + H F + D V ++ + + + + Q
Sbjct: 306 AEPELGLGPLHT------TFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKL 359
Query: 222 -------ESTFVRCLSFHPCGDYMVVG 241
+ S G ++VV
Sbjct: 360 DVQYQPGHNHASLTESRDADGKWLVVL 386
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 29.3 bits (64), Expect = 0.76
Identities = 7/58 (12%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 250 YSSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKD 307
+ G+++ +G+I + + + F A +++ ++G+ + D
Sbjct: 47 FDRQGQLFLLDVFEGNIFKINPETKEIKRPF--VSHKANPAAIKIHKDGRLFVCYLGD 102
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 28.1 bits (61), Expect = 1.7
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 251 SSDGRIYCSGSKDGDIKIWDGVSSKCVATFSKAHDGAEISSLTFTRNGKYLLSSGKDSLV 310
+ DG I+ + + G+I + A ++S L FT NG + + +
Sbjct: 36 APDGTIFVTNHEVGEIVSITPDGN--QQIH--ATVEGKVSGLAFTSNGDLVATGWNADSI 91
Query: 311 KLWEL 315
+ L
Sbjct: 92 PVVSL 96
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 27.8 bits (60), Expect = 1.8
Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 5/96 (5%)
Query: 116 TSHKSPCRAGAFSIDGQLCATGSVDASIKILDV--DRMLAKSSMESSEPQNDQQGHPVIR 173
+ RA + G L V + D + +
Sbjct: 235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 294
Query: 174 TLYDHIEEVTCLEFHP--SAPILASGSKDKTVKMFD 207
+ E+ + + A + DKT+ + D
Sbjct: 295 KF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHD 329
>d1pdkb_ b.2.3.2 (B:) PapK pilus subunit {Escherichia coli [TaxId:
562]}
Length = 149
Score = 26.7 bits (58), Expect = 2.4
Identities = 8/52 (15%), Positives = 14/52 (26%)
Query: 194 LASGSKDKTVKMFDYSKSSVRKAHKTIQESTFVRCLSFHPCGDYMVVGTDHF 245
++ S +K V + +FV L + T F
Sbjct: 8 VSGDSLNKHVVFKTRASRDFWYPPGRSPTESFVIRLENCHATAVGKIVTLTF 59
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 237
Score = 25.6 bits (55), Expect = 8.6
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 47 VEPCPPSDRLSQLVHIGLAHE 67
+ P P L +L HI + E
Sbjct: 11 IPPAPVFGNLPELFHIQIGFE 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.388
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,227,352
Number of extensions: 54711
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 134
Length of query: 344
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,226,816
Effective search space: 316518528
Effective search space used: 316518528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)