RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15158
(709 letters)
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase
(FTHFDH, EC=1.5.1.6), also known as aldehyde
dehydrogenase family 1 member L1 (ALDH1L1) in humans, is
a multi-domain homotetramer with an N-terminal formyl
transferase domain and a C-terminal ALDH domain. FTHFDH
catalyzes an NADP+-dependent dehydrogenase reaction
resulting in the conversion of 10-formyltetrahydrofolate
to tetrahydrofolate and CO2. The ALDH domain is also
capable of the oxidation of short chain aldehydes to
their corresponding acids.
Length = 486
Score = 712 bits (1840), Expect = 0.0
Identities = 296/468 (63%), Positives = 356/468 (76%), Gaps = 51/468 (10%)
Query: 246 DVSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE-GE 304
+ P+QLFINGEFV++ GG + INP + S IC V +A +DVD A AA++AFE GE
Sbjct: 1 TLKMPHQLFINGEFVDAEGGKTYNTINPTDGSVICKVSLATVEDVDRAVAAAKEAFENGE 60
Query: 305 WSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGW 364
W +++ARDRG LM++LADLME+++EELATIESLDSGAVYTLALKTHVGMSI T++YFAGW
Sbjct: 61 WGKMNARDRGRLMYRLADLMEEHQEELATIESLDSGAVYTLALKTHVGMSIQTFRYFAGW 120
Query: 365 CDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVM 424
CDKI G TIPI ARPN N T TKREPIGVCG++ PWNYPLMML+WKMA CLAAGNTVV+
Sbjct: 121 CDKIQGKTIPINQARPNRNLTLTKREPIGVCGIVIPWNYPLMMLAWKMAACLAAGNTVVL 180
Query: 425 KPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGM 484
KP++V+PLTALK AEL+V+AGFPKGVINILPG+G++ G+ +S H +RK+GFTGST G
Sbjct: 181 KPAQVTPLTALKFAELTVKAGFPKGVINILPGSGSLVGQRLSDHPDVRKLGFTGSTPIGK 240
Query: 485 KIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVD 544
IMKS A SNLKKVSLELGGKSPL+IF D ++DKAVRM M VFFNKGENCI+AGR+FV+
Sbjct: 241 HIMKSCAVSNLKKVSLELGGKSPLIIFADCDMDKAVRMGMSSVFFNKGENCIAAGRLFVE 300
Query: 545 SNIYDAFLEKVVTEVKKM---------------NHKAHLDKLIDYCEKAKSEGARLLIGG 589
+I+D F+ +VV EVKKM NHKAHLDKL++YCE+ EGA L+ GG
Sbjct: 301 ESIHDEFVRRVVEEVKKMKIGDPLDRSTDHGPQNHKAHLDKLVEYCERGVKEGATLVYGG 360
Query: 590 KRLDRPG-----------------------------------DVDAVIKRANSTEYGLAS 614
K++DRPG DVD V++RAN TEYGLAS
Sbjct: 361 KQVDRPGFFFEPTVFTDVEDHMFIAKEESFGPIMIISKFDDGDVDGVLQRANDTEYGLAS 420
Query: 615 GIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
G+FT DINKA+Y DK+++GTVF+NTYNKTDVAAPFGGFKQSGFGKDL
Sbjct: 421 GVFTKDINKALYVSDKLEAGTVFVNTYNKTDVAAPFGGFKQSGFGKDL 468
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2,
including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase family
1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes an
NADP+-dependent dehydrogenase reaction resulting in the
conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5)
of Saccharomyces cerevisiae, and other similar
sequences.
Length = 476
Score = 626 bits (1616), Expect = 0.0
Identities = 228/463 (49%), Positives = 291/463 (62%), Gaps = 53/463 (11%)
Query: 249 FPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE-GEWSR 307
P LFIN EFV+SV G + INPA E IC V A+ +DVD A AA AFE G W +
Sbjct: 2 QPTGLFINNEFVDSVSGKTFPTINPATEEVICQVAEADEEDVDAAVKAARAAFETGWWRK 61
Query: 308 LSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDK 367
+ R+RG L+ KLADL+E++++ELA +ESLD+G + K V +SI +Y+AGW DK
Sbjct: 62 MDPRERGRLLNKLADLIERDRDELAALESLDNGKPLEESAKGDVALSIKCLRYYAGWADK 121
Query: 368 ILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPS 427
I G TIPI + +T+REPIGVCG I PWN+PL+ML+WK+AP LAAGNTVV+KP+
Sbjct: 122 IQGKTIPI----DGNFLAYTRREPIGVCGQIIPWNFPLLMLAWKLAPALAAGNTVVLKPA 177
Query: 428 EVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIM 487
E +PL+AL LAEL AGFP GV+NI+PG G G AIS H+ + K+ FTGST G IM
Sbjct: 178 EQTPLSALYLAELIKEAGFPPGVVNIVPGFGPTAGAAISSHMDVDKIAFTGSTAVGRTIM 237
Query: 488 KSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNI 547
++AA+SNLKKV+LELGGKSP ++FDD +LDKAV + G+FFN+G+ C + RIFV +I
Sbjct: 238 EAAAKSNLKKVTLELGGKSPNIVFDDADLDKAVEWAAFGIFFNQGQCCCAGSRIFVQESI 297
Query: 548 YDAFLEKVVTEVKKM---------------NHKAHLDKLIDYCEKAKSEGARLLIGGKRL 592
YD F+EK +K KA DK++ Y E K EGA LL GG+R
Sbjct: 298 YDEFVEKFKARAEKRVVGDPFDPDTFQGPQVSKAQFDKILSYIESGKKEGATLLTGGERH 357
Query: 593 DRPG---------------------------------DVDAVIKRANSTEYGLASGIFTS 619
G D VI+RAN TEYGLA+G+FT
Sbjct: 358 GSKGYFIQPTVFTDVKDDMKIAKEEIFGPVVTILKFKTEDEVIERANDTEYGLAAGVFTK 417
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
DINKA+ + +GTV++NTYN D A PFGGFKQSGFG++L
Sbjct: 418 DINKALRVSRALKAGTVWVNTYNVFDAAVPFGGFKQSGFGREL 460
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 506 bits (1305), Expect = e-174
Identities = 185/453 (40%), Positives = 271/453 (59%), Gaps = 57/453 (12%)
Query: 259 FVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMF 318
+V+S + +E INPA I +V A ++DVD A AA AF+ W++ +R ++
Sbjct: 1 WVDSSSET-IEVINPATGEVIATVPAATAEDVDAAVAAARAAFK-AWAKTPPSERAAILL 58
Query: 319 KLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHA 378
K ADL+E+ ++ELA +E+L++G A + V +IDT +Y+AG K+ G T+P
Sbjct: 59 KAADLLEERRDELAELETLETGKPLAEA-RGEVPRAIDTLRYYAGLARKLEGETLPSDPG 117
Query: 379 RPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLA 438
+T+REP+GV G ITPWN+PL++ +WK+AP LAAGNTVV+KPSE++PLTAL LA
Sbjct: 118 V----LAYTRREPLGVVGAITPWNFPLLLAAWKIAPALAAGNTVVLKPSELTPLTALLLA 173
Query: 439 ELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKV 498
EL AG P GV+N++ G+G+ G+A+ +H + KV FTGST G +I K+AA+ NLK+V
Sbjct: 174 ELFEEAGLPPGVLNVVTGSGSEVGDALVEHPDVDKVSFTGSTEVGRRIAKAAAK-NLKRV 232
Query: 499 SLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTE 558
+LELGGK+PL++FDD +LD AV ++ G F N G+ C + R+ V +IYD F+E++V
Sbjct: 233 TLELGGKNPLIVFDDADLDAAVEGAVFGAFGNAGQVCTAGSRLLVHESIYDEFVERLVEA 292
Query: 559 VKK---------------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG------- 596
K + K ++++ Y E AK EGA+LL GG+ G
Sbjct: 293 AKSLKVGDPLDPDTDIGPLISKKQRERVLSYIEDAKEEGAKLLCGGEAGLEKGYFVEPTV 352
Query: 597 --------------------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDK 630
D D I+ AN TEYGLA+G+FT+D+ +A+ +
Sbjct: 353 LADVTPDMRIAQEEIFGPVLSVIPFKDEDEAIELANDTEYGLAAGVFTNDLERALRVARR 412
Query: 631 IDSGTVFINTYNKTD-VAAPFGGFKQSGFGKDL 662
+++G V+IN Y D A PFGGFKQSGFG++
Sbjct: 413 LEAGMVWINDYTTGDPEALPFGGFKQSGFGREG 445
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase
1, ALDH families 1A, 1B, and 2-like. NAD+-dependent
retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36)
also known as aldehyde dehydrogenase family 1 member A1
(ALDH1A1) in humans, is a homotetrameric, cytosolic
enzyme that catalyzes the oxidation of retinaldehyde to
retinoic acid. Human ALDH1B1 and ALDH2 are also in this
cluster; both are mitochrondrial homotetramers which
play important roles in acetaldehyde oxidation; ALDH1B1
in response to UV light exposure and ALDH2 during
ethanol metabolism.
Length = 481
Score = 501 bits (1292), Expect = e-172
Identities = 196/462 (42%), Positives = 271/462 (58%), Gaps = 54/462 (11%)
Query: 251 NQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE--GEWSRL 308
++FIN E+ +SV G + INPA IC VQ + DVD A AA AF+ W +
Sbjct: 7 TKIFINNEWHDSVSGKTFPTINPATGEKICEVQEGDKADVDKAVKAARAAFKLGSPWRTM 66
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
A +RG L+ KLADL+E+++ LA++E+LD+G ++ + + +I +Y+AGW DKI
Sbjct: 67 DASERGRLLNKLADLIERDRAYLASLETLDNGKPFSKSYLVDLPGAIKVLRYYAGWADKI 126
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
G TIP+ FT+T+ EP+GVCG I PWN+PL+M +WK+AP LA GNTVV+KP+E
Sbjct: 127 HGKTIPM----DGDFFTYTRHEPVGVCGQIIPWNFPLLMAAWKLAPALACGNTVVLKPAE 182
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMK 488
+PLTAL LA L AGFP GV+N++PG G G AIS H I KV FTGST G I +
Sbjct: 183 QTPLTALYLASLIKEAGFPPGVVNVVPGYGPTAGAAISSHPDIDKVAFTGSTEVGKLIQQ 242
Query: 489 SAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
+A +SNLK+V+LELGGKSP ++F D +LD AV + +FFN G+ C + R FV +IY
Sbjct: 243 AAGKSNLKRVTLELGGKSPNIVFADADLDYAVEQAHEALFFNMGQCCCAGSRTFVQESIY 302
Query: 549 DAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD 593
D F+++ V KK + K+++ E K EGA+L GGKR
Sbjct: 303 DEFVKRSVERAKKRVVGNPFDPKTEQGPQIDEEQFKKILELIESGKKEGAKLECGGKRHG 362
Query: 594 RPG---------------------------------DVDAVIKRANSTEYGLASGIFTSD 620
G +D VI+RAN+T YGLA+ +FT D
Sbjct: 363 DKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIFKFKTIDEVIERANNTTYGLAAAVFTKD 422
Query: 621 INKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
I+KA+ F + + +GTV++N YN APFGG+K SG G++L
Sbjct: 423 IDKAITFSNALRAGTVWVNCYNVVSPQAPFGGYKMSGNGREL 464
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 481 bits (1240), Expect = e-164
Identities = 199/465 (42%), Positives = 273/465 (58%), Gaps = 57/465 (12%)
Query: 250 PNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLS 309
P LFIN EFV S G +++ +NP+ I SV A +DVD A AA KAFE WS+++
Sbjct: 7 PTGLFINNEFVKSSDGETIKTVNPSTGEVIASVYAAGEEDVDKAVKAARKAFESWWSKVT 66
Query: 310 ARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKIL 369
+RG L+ KLADL+E+N++ LA IE+LDSG Y + I +Y+AGW DKI
Sbjct: 67 GEERGELLDKLADLVEKNRDLLAAIEALDSGKPYHSNALGDLDEIIAVIRYYAGWADKIQ 126
Query: 370 GSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEV 429
G TIP + + +T EP GVCG I PWNYPL M +WK+AP LAAGNTVV+KP+E
Sbjct: 127 GKTIPTSPNK----LAYTLHEPYGVCGQIIPWNYPLAMAAWKLAPALAAGNTVVIKPAEN 182
Query: 430 SPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKS 489
+PL+ L A L AGFP GV+NI+PG GAV G A+++H + K+ FTGST TG +MK+
Sbjct: 183 TPLSLLYFANLVKEAGFPPGVVNIIPGYGAVAGSALAEHPDVDKIAFTGSTATGRLVMKA 242
Query: 490 AAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYD 549
AA NLK V+LE GGKSP ++F+D +LD+AV+ + G+ +N G+NC + RI+V +IYD
Sbjct: 243 AA-QNLKAVTLECGGKSPALVFEDADLDQAVKWAAAGIMYNSGQNCTATSRIYVQESIYD 301
Query: 550 AFLEKVVTEVKKMN----------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD 593
F+EK V VK+ K D+++ Y EK K EGA+L+ GG++
Sbjct: 302 KFVEKFVEHVKQNYKVGSPFDDDTVVGPQVSKTQYDRVLSYIEKGKKEGAKLVYGGEKAP 361
Query: 594 RPG------------------------------------DVDAVIKRANSTEYGLASGIF 617
+ IK+AN T YGLA+ +F
Sbjct: 362 EGLGKGYFIPPTIFTDVPQDMRIVKEEIFGPVVVISKFKTYEEAIKKANDTTYGLAAAVF 421
Query: 618 TSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
T DI +A ++++G V+IN+ N +DV PFGGFK SG G++L
Sbjct: 422 TKDIRRAHRVARELEAGMVWINSSNDSDVGVPFGGFKMSGIGREL 466
>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter
aldehyde dehydrogenase, DhaS-like. Uncharacterized
aldehyde dehydrogenase from Candidatus pelagibacter
(DhaS) and other related sequences are present in this
CD.
Length = 457
Score = 461 bits (1189), Expect = e-157
Identities = 176/444 (39%), Positives = 254/444 (57%), Gaps = 58/444 (13%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFE-GEWSRLSARDRGHLMFKLADLMEQNKE 329
INPA V A++ DVD A AA AFE G W +L+ +RG L+ +LADL+E N E
Sbjct: 2 INPATGEPWARVPEASAADVDRAVAAARAAFEGGAWRKLTPTERGKLLRRLADLIEANAE 61
Query: 330 ELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKR 389
ELA +E+ D+G + + V + ++Y+AG DKI G+ IP+ FT+R
Sbjct: 62 ELAELETRDNGKLIR-ETRAQVRYLAEWYRYYAGLADKIEGAVIPV---DKGDYLNFTRR 117
Query: 390 EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKG 449
EP+GV ITPWN PL++L+ K+AP LAAGNTVV+KPSE +P + L+LA+L+ AGFP G
Sbjct: 118 EPLGVVAAITPWNSPLLLLAKKLAPALAAGNTVVLKPSEHTPASTLELAKLAEEAGFPPG 177
Query: 450 VINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLV 509
V+N++ G G TGEA+ +H + K+ FTG T TG I ++AAE NL V+LELGGKSP +
Sbjct: 178 VVNVVTGFGPETGEALVEHPLVAKIAFTGGTETGRHIARAAAE-NLAPVTLELGGKSPNI 236
Query: 510 IFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKK------MN 563
+FDD +LD AV + G+F G+ C++ R+ V +IYD F+E++V + ++
Sbjct: 237 VFDDADLDAAVNGVVAGIFAAAGQTCVAGSRLLVQRSIYDEFVERLVARARAIRVGDPLD 296
Query: 564 ---------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG------------------ 596
+ L+K+ Y +A+ EGAR+L GG+R
Sbjct: 297 PETQMGPLATERQLEKVERYVARAREEGARVLTGGERPSGADLGAGYFFEPTILADVTND 356
Query: 597 -------------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVF 637
D + I AN +EYGLA+GI+T D+ +A I++GTV+
Sbjct: 357 MRIAQEEVFGPVLSVIPFDDEEEAIALANDSEYGLAAGIWTRDLARAHRVARAIEAGTVW 416
Query: 638 INTYNKTDVAAPFGGFKQSGFGKD 661
+NTY ++PFGGFK SG G++
Sbjct: 417 VNTYRALSPSSPFGGFKDSGIGRE 440
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 449 bits (1158), Expect = e-152
Identities = 176/461 (38%), Positives = 265/461 (57%), Gaps = 60/461 (13%)
Query: 265 GSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE-GEWSRLSARDRGHLMFKLADL 323
G + INPA + V ++ DVD A AA +AFE G WSRLS +R ++ +LADL
Sbjct: 1 GETFATINPATGRVLAEVAACDAADVDRAVAAARRAFESGVWSRLSPAERKAVLLRLADL 60
Query: 324 MEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSN 383
+E +++ELA +E+LD G + AL V + +T++++A DK+ G P
Sbjct: 61 IEAHRDELALLETLDMGKPISDALAVDVPSAANTFRWYAEAIDKVYGEVAPT----GPDA 116
Query: 384 FTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVR 443
REP+GV G + PWN+PL+M +WK+AP LAAGN+VV+KP+E SPLTAL+LAEL++
Sbjct: 117 LALITREPLGVVGAVVPWNFPLLMAAWKIAPALAAGNSVVLKPAEQSPLTALRLAELALE 176
Query: 444 AGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELG 503
AG P GV+N++PG G GEA+ H+ + + FTGST G + ++ + +SNLK+V LE G
Sbjct: 177 AGLPAGVLNVVPGFGHTAGEALGLHMDVDALAFTGSTEVGRRFLEYSGQSNLKRVWLECG 236
Query: 504 GKSPLVIFDDY-NLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM 562
GKSP ++F D +LD A + G+F+N+GE C + R+ V +I D FLEKVV ++
Sbjct: 237 GKSPNIVFADAPDLDAAAEAAAAGIFWNQGEVCSAGSRLLVHESIKDEFLEKVVAAAREW 296
Query: 563 N---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG----------- 596
+AH DK++ Y E K+EGARL+ GGKR+
Sbjct: 297 KPGDPLDPATRMGALVSEAHFDKVLGYIESGKAEGARLVAGGKRVLTETGGFFVEPTVFD 356
Query: 597 ------------------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKID 632
+ + AN + YGLA+ ++TSD+++A ++
Sbjct: 357 GVTPDMRIAREEIFGPVLSVITFDSEEEAVALANDSVYGLAASVWTSDLSRAHRVARRLR 416
Query: 633 SGTVFINTYNKTDVAAPFGGFKQSGFGKDLDINKAMYFVDK 673
+GTV++N +++ D+ PFGGFKQSG G+D K+++ +DK
Sbjct: 417 AGTVWVNCFDEGDITTPFGGFKQSGNGRD----KSLHALDK 453
>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family.
The aldehyde dehydrogenase family (ALDH) of NAD(P)+
dependent enzymes, in general, oxidize a wide range of
endogenous and exogenous aliphatic and aromatic
aldehydes to their corresponding carboxylic acids and
play an important role in detoxification. Besides
aldehyde detoxification, many ALDH isozymes possess
multiple additional catalytic and non-catalytic
functions such as participating in metabolic pathways,
or as binding proteins, or as osmoregulants, to mention
a few. The enzyme has three domains, a NAD(P)+
cofactor-binding domain, a catalytic domain, and a
bridging domain; and the active enzyme is generally
either homodimeric or homotetrameric. The catalytic
mechanism is proposed to involve cofactor binding,
resulting in a conformational change and activation of
an invariant catalytic cysteine nucleophile. The
cysteine and aldehyde substrate form an oxyanion
thiohemiacetal intermediate resulting in hydride
transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-like) proteins. The ALDH
proteins are represented by enzymes which share a number
of highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group.
Length = 432
Score = 441 bits (1136), Expect = e-149
Identities = 176/422 (41%), Positives = 254/422 (60%), Gaps = 56/422 (13%)
Query: 291 DIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTH 350
D A AA AF+ W+ L +R ++ KLADL+E+ +EELA +E+L++G
Sbjct: 1 DAAVAAARAAFKA-WAALPPAERAAILRKLADLLEERREELAALETLETGKPIE-EALGE 58
Query: 351 VGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSW 410
V + DT++Y+AG ++ G IP +REP+GV G ITPWN+PL++ +W
Sbjct: 59 VARAADTFRYYAGLARRLHGEVIPSPDPGE---LAIVRREPLGVVGAITPWNFPLLLAAW 115
Query: 411 KMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLK 470
K+AP LAAGNTVV+KPSE++PLTAL LAEL AG P GV+N++ G G G A++ H +
Sbjct: 116 KLAPALAAGNTVVLKPSELTPLTALLLAELLAEAGLPPGVLNVVTGDGDEVGAALASHPR 175
Query: 471 IRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFN 530
+ K+ FTGST G IM++AAE NLK+V+LELGGKSPL++FDD +LD AV+ ++ G F N
Sbjct: 176 VDKISFTGSTAVGKAIMRAAAE-NLKRVTLELGGKSPLIVFDDADLDAAVKGAVFGAFGN 234
Query: 531 KGENCISAGRIFVDSNIYDAFLEKVVTEVKK---------------MNHKAHLDKLIDYC 575
G+ C +A R+ V +IYD F+E++V VK + A LD+++ Y
Sbjct: 235 AGQVCTAASRLLVHESIYDEFVERLVERVKALKVGNPLDPDTDMGPLISAAQLDRVLAYI 294
Query: 576 EKAKSEGARLLIGGKRLDRPG----------------------------------DVDAV 601
E AK+EGA+LL GGKRL+ D +
Sbjct: 295 EDAKAEGAKLLCGGKRLEGGKGYFVPPTVLTDVDPDMPIAQEEIFGPVLPVIPFKDEEEA 354
Query: 602 IKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNK-TDVAAPFGGFKQSGFGK 660
I+ AN TEYGLA+G+FT D+ +A+ +++++GTV+IN Y+ + +APFGG KQSG G+
Sbjct: 355 IELANDTEYGLAAGVFTRDLERALRVAERLEAGTVWINDYSVGAEPSAPFGGVKQSGIGR 414
Query: 661 DL 662
+
Sbjct: 415 EG 416
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are present
in this CD.
Length = 481
Score = 440 bits (1133), Expect = e-148
Identities = 197/465 (42%), Positives = 275/465 (59%), Gaps = 53/465 (11%)
Query: 247 VSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWS 306
P LFINGEFV+SV G +++ NP+ I + A DVDIA A AFE +W
Sbjct: 3 YEQPTGLFINGEFVDSVHGGTVKVYNPSTGKLITKIAEATEADVDIAVEVAHAAFETDWG 62
Query: 307 R-LSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWC 365
+S RG + KLADLME+N + LA+IE+LD+G + A + V S DT++Y+ GW
Sbjct: 63 LKVSGSKRGRCLSKLADLMERNLDYLASIEALDNGKTFGTAKRVDVQASADTFRYYGGWA 122
Query: 366 DKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMK 425
DKI G I + T+T+ EPIGVCG I PWN+PL+M +WK+AP LAAGNT+V+K
Sbjct: 123 DKIHGQVIETDIKK----LTYTRHEPIGVCGQIIPWNFPLLMCAWKIAPALAAGNTIVLK 178
Query: 426 PSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMK 485
PSE++PL+AL + +L AGFP GVIN++ G G G AIS H+ I KV FTGST+ G K
Sbjct: 179 PSELTPLSALYMTKLIPEAGFPPGVINVVSGYGRTCGNAISSHMDIDKVAFTGSTLVGRK 238
Query: 486 IMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDS 545
+M++AA+SNLKKV+LELGGKSP ++FDD +L+ AV + G+FFN G+ C + RI+V
Sbjct: 239 VMEAAAKSNLKKVTLELGGKSPNIVFDDADLESAVVWTAYGIFFNHGQVCCAGSRIYVQE 298
Query: 546 NIYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGK 590
IYD F+++ + KK+ + ++++ Y E K+EGA + GGK
Sbjct: 299 GIYDKFVKRFKEKAKKLKVGDPFAEDTFQGPQVSQIQYERIMSYIESGKAEGATVETGGK 358
Query: 591 RLDRPG---------------------------------DVDAVIKRANSTEYGLASGIF 617
R G + IKRAN + YGLA+ +F
Sbjct: 359 RHGNEGYFIEPTIFTDVTEDMKIVKEEIFGPVVAVIKFKTEEEAIKRANDSTYGLAAAVF 418
Query: 618 TSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
T++IN A+ + + +GTV++N YN PFGG+KQSG G++L
Sbjct: 419 TNNINNAIRVANALKAGTVWVNCYNLLHHQVPFGGYKQSGIGREL 463
>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic
semialdehyde dehydrogenase-like. 4-hydroxymuconic
semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of
Pseudomonas fluorescens ACB involved in
4-hydroxyacetophenone degradation, and putative
hydroxycaproate semialdehyde dehydrogenase (ChnE) of
Brachymonas petroleovorans involved in cyclohexane
metabolism, and other similar sequences, are present in
this CD.
Length = 453
Score = 438 bits (1128), Expect = e-148
Identities = 187/439 (42%), Positives = 266/439 (60%), Gaps = 54/439 (12%)
Query: 272 NPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEEL 331
NPA I V A+++DVD A AA AFE WS + +RG ++++LA+L+ N +EL
Sbjct: 3 NPATGELIARVAQASAEDVDAAVAAARAAFEA-WSAMDPAERGRILWRLAELILANADEL 61
Query: 332 ATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREP 391
A +ESLD+G A + V + DT++Y+AGW DKI G IP+ R +T REP
Sbjct: 62 ARLESLDTGKPIRAARRLDVPRAADTFRYYAGWADKIEGEVIPV---RG-PFLNYTVREP 117
Query: 392 IGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVI 451
+GV G I PWN+PLM +WK+AP LAAGNTVV+KP+E++PL+AL++AEL AGFP GV+
Sbjct: 118 VGVVGAIVPWNFPLMFAAWKVAPALAAGNTVVLKPAELTPLSALRIAELMAEAGFPAGVL 177
Query: 452 NILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIF 511
N++ G G V G A+ +H + K+ FTGST G KIM+ AA NLK+VSLELGGKS ++F
Sbjct: 178 NVVTGFGEVAGAALVEHPDVDKITFTGSTAVGRKIMQGAA-GNLKRVSLELGGKSANIVF 236
Query: 512 DDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVV--------------- 556
D +LD AVR + G+F+N+G+ C + R+ V +IYD FLE+
Sbjct: 237 ADADLDAAVRAAATGIFYNQGQMCTAGSRLLVHESIYDEFLERFTSLARSLRPGDPLDPK 296
Query: 557 TEVKKMNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG-------------------- 596
T++ + +A D+++DY + + EGARLL GGKR G
Sbjct: 297 TQMGPLVSQAQFDRVLDYVDVGREEGARLLTGGKRPGARGFFVEPTIFAAVPPEMRIAQE 356
Query: 597 -------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNK 643
D + ++ AN TEYGLA+G++T D+ +A + +GTV+INTYN+
Sbjct: 357 EIFGPVVSVMRFRDEEEALRIANGTEYGLAAGVWTRDLGRAHRVAAALKAGTVWINTYNR 416
Query: 644 TDVAAPFGGFKQSGFGKDL 662
D +PFGG+KQSGFG+++
Sbjct: 417 FDPGSPFGGYKQSGFGREM 435
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 437 bits (1126), Expect = e-147
Identities = 183/458 (39%), Positives = 258/458 (56%), Gaps = 57/458 (12%)
Query: 251 NQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSA 310
+L I+GE+V+ G S++E INPA I +V A ++DVD A AA AFE WSRLSA
Sbjct: 1 YKLLIDGEWVD--GASTIEVINPATGEVIATVPAATAEDVDAAVAAARAAFE-AWSRLSA 57
Query: 311 RDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILG 370
+R ++ ++ADL+E EELA + +L++G + A + + D +Y+A ++ G
Sbjct: 58 EERAAILRRIADLLEARAEELAALITLETGKPISEARGE-IARAADFIRYYAEEARRLEG 116
Query: 371 STIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVS 430
TIP + +REP+GV G ITPWN+PL + +WK+AP LAAGNTVV+KPSE +
Sbjct: 117 ETIPT----DKGSKALVRREPLGVVGAITPWNFPLALAAWKLAPALAAGNTVVLKPSEQT 172
Query: 431 PLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSA 490
PL+AL LAEL+ AG P GV+N++ G GA G+A+ H + + FTGST G I +A
Sbjct: 173 PLSALALAELAAEAGLPAGVLNVVTGGGAEVGDALVAHPDVDAISFTGSTAVGRAIAAAA 232
Query: 491 AESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDA 550
A NLK V+LELGGKSP ++ +D +LD AV ++ G FFN G+ C +A R+ V ++YD
Sbjct: 233 AA-NLKPVTLELGGKSPAIVLEDADLDAAVDAAVFGAFFNAGQRCTAASRLIVHESVYDE 291
Query: 551 FLEKVVTEVKK---------------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLD-- 593
F+E++V + + LD++ Y E A +EGARLL GGKR
Sbjct: 292 FVERLVARAASLKVGDPLDPSTDLGPLISEEQLDRVEGYIEDAVAEGARLLAGGKRPGGY 351
Query: 594 --RPG---------------------------DVDAVIKRANSTEYGLASGIFTSDINKA 624
P D + I+ AN TEYGLA+ IFT D+ +A
Sbjct: 352 FVEPTILEGVTPDMRIAREEIFGPVLPVIRFKDEEEAIELANDTEYGLAAAIFTRDLARA 411
Query: 625 MYFVDKIDSGTVFINTYNKT--DVAAPFGGFKQSGFGK 660
++++G V IN Y PFGG KQSG G+
Sbjct: 412 FRVARRLEAGMVGINDYTGGADIAYLPFGGVKQSGLGR 449
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is the
NAD+-dependent, betaine aldehyde dehydrogenase (BADH,
GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the
synthesis of the osmoprotectant glycine betaine from
choline or glycine betaine aldehyde.
Length = 482
Score = 433 bits (1115), Expect = e-145
Identities = 178/463 (38%), Positives = 261/463 (56%), Gaps = 61/463 (13%)
Query: 254 FINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE-GEWSRLSARD 312
+I+GE+V + G + + INPAN I +V ++D A AA +AF+ GEW L A++
Sbjct: 1 YIDGEWVEAASGKTRDIINPANGEVIATVPEGTAEDAKRAIAAARRAFDSGEWPHLPAQE 60
Query: 313 RGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGST 372
R L+F++AD + ++ EELA +E+L++G + + + + ++Y+AG K G
Sbjct: 61 RAALLFRIADKIREDAEELARLETLNTGKTLRES-EIDIDDVANCFRYYAGLATKETGEV 119
Query: 373 IPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPL 432
P + T REP+GVCGLITPWNYPL+ +WK+AP LAAGNTVV+KPSEV+PL
Sbjct: 120 YD----VPPHVISRTVREPVGVCGLITPWNYPLLQAAWKLAPALAAGNTVVIKPSEVTPL 175
Query: 433 TALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAE 492
T + L EL AG P GV+N++ G+GA G +++ + V FTG T TG IM++AA
Sbjct: 176 TTIALFELIEEAGLPAGVVNLVTGSGATVGAELAESPDVDLVSFTGGTATGRSIMRAAAG 235
Query: 493 SNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAG-RIFVDSNIYDAF 551
N+KKV+LELGGK+P ++F D + + AV ++ GVFFN G+ C SAG R+ V+ +I+D F
Sbjct: 236 -NVKKVALELGGKNPNIVFADADFETAVDQALNGVFFNAGQVC-SAGSRLLVEESIHDKF 293
Query: 552 LEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG 596
+ + KK+ H +K++ Y + K EGARL+ GGKR
Sbjct: 294 VAALAERAKKIKLGNGLDADTEMGPLVSAEHREKVLSYIQLGKEEGARLVCGGKRPTGDE 353
Query: 597 -------------DVDA------------------------VIKRANSTEYGLASGIFTS 619
DVD I+ AN T YGLA ++T
Sbjct: 354 LAKGYFVEPTIFDDVDRTMRIVQEEIFGPVLTVERFDTEEEAIRLANDTPYGLAGAVWTK 413
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
DI +A ++ +GTV+IN Y+ AP+GG+KQSG G++L
Sbjct: 414 DIARANRVARRLRAGTVWINDYHPYFAEAPWGGYKQSGIGREL 456
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4,
B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 432 bits (1113), Expect = e-145
Identities = 185/469 (39%), Positives = 270/469 (57%), Gaps = 57/469 (12%)
Query: 250 PNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAF-EGEWSRL 308
+LFING+FV++ G + I+P N I V +++DVD A AA KAF EG W R+
Sbjct: 3 HTKLFINGQFVDAASGKTFPTIDPRNGEVIAHVAEGDAEDVDRAVKAARKAFDEGPWPRM 62
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
+ +R ++ + ADL+E++ +ELA +E+ D+G Y A V ++ ++Y+AGW DKI
Sbjct: 63 TGYERSRILLRFADLLEKHADELAALETWDNGKPYEQARYAEVPLAARLFRYYAGWADKI 122
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
G T+P + +T EPIGV G I PWN+PL+M +WK+ P LA GNT+V+KP+E
Sbjct: 123 HGMTLPAD----GPHHVYTLHEPIGVVGQIIPWNFPLLMFAWKVGPALACGNTIVLKPAE 178
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMK 488
+PL+AL A+L+ AG P GV+NI+ G G G AI+ H+ + KV FTGST G IM+
Sbjct: 179 QTPLSALLAAKLAAEAGLPDGVLNIVTGFGPTAGAAIASHMDVDKVAFTGSTEVGKIIMQ 238
Query: 489 SAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
AA+SNLK V+LELGGKSP ++ +D ++DKAV ++ +FFN+G+ C + R FV +IY
Sbjct: 239 LAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHESIY 298
Query: 549 DAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD 593
D F+EK K K +K++ Y E K EGA L+ GG R+
Sbjct: 299 DEFVEKAKARALKRVVGDPFRKGVEQGPQVDKEQFEKILSYIEHGKEEGATLITGGDRIG 358
Query: 594 RPG---------------------------------DVDAVIKRANSTEYGLASGIFTSD 620
G VD VIKRAN+++YGLA+G+F+ +
Sbjct: 359 SKGYYIQPTIFSDVKDDMKIARDEIFGPVQSILKFKTVDEVIKRANNSKYGLAAGVFSKN 418
Query: 621 INKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDLDINKAMY 669
I+ A + +GTV++N Y+ D + PFGG+K SG G++ K +Y
Sbjct: 419 IDTANTLSRALKAGTVWVNCYDVFDASIPFGGYKMSGIGRE----KGIY 463
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid pWW0
of Pseudomonas putida, TomC of Burkholderia cepacia G4,
and AphC of Comamonas testosterone.
Length = 455
Score = 427 bits (1100), Expect = e-143
Identities = 171/443 (38%), Positives = 247/443 (55%), Gaps = 58/443 (13%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
NPA + V + +VD A AA++AF G WSR+S +R ++ K+ADL+E +E
Sbjct: 2 FNPATGEVLAKVPEGGAAEVDAAVAAAKEAFPG-WSRMSPAERARILHKVADLIEARADE 60
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKRE 390
LA +ESLD+G TLA + + +++FA + ++ G + P N + R+
Sbjct: 61 LALLESLDTGKPITLARTRDIPRAAANFRFFADYILQLDGESYPQDGGALN----YVLRQ 116
Query: 391 PIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGV 450
P+GV GLITPWN PLM+L+WK+AP LA GNTVV+KPSE +PLTA LAEL+ AG P GV
Sbjct: 117 PVGVAGLITPWNLPLMLLTWKIAPALAFGNTVVLKPSEWTPLTAWLLAELANEAGLPPGV 176
Query: 451 INILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVI 510
+N++ G G G A+ H + + FTG T TG IM++AA NLK VSLELGGK+P ++
Sbjct: 177 VNVVHGFGPEAGAALVAHPDVDLISFTGETATGRTIMRAAAP-NLKPVSLELGGKNPNIV 235
Query: 511 FDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKK--------- 561
F D +LD+AV ++ F N GE C++ RI V +IYD FLE+ V K
Sbjct: 236 FADADLDRAVDAAVRSSFSNNGEVCLAGSRILVQRSIYDEFLERFVERAKALKVGDPLDP 295
Query: 562 ------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG------------------- 596
+ K HL+K++ Y E A++EGA +L GG R + P
Sbjct: 296 DTEVGPLISKEHLEKVLGYVELARAEGATILTGGGRPELPDLEGGYFVEPTVITGLDNDS 355
Query: 597 ------------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFI 638
D + I+ AN T YGLA+ ++T D+ +A ++++GTV++
Sbjct: 356 RVAQEEIFGPVVTVIPFDDEEEAIELANDTPYGLAAYVWTRDLGRAHRVARRLEAGTVWV 415
Query: 639 NTYNKTDVAAPFGGFKQSGFGKD 661
N + D+ PFGG K SG G++
Sbjct: 416 NCWLVRDLRTPFGGVKASGIGRE 438
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant defense
against the environmental stress of elevated reactive
oxygen species.
Length = 451
Score = 419 bits (1080), Expect = e-140
Identities = 167/440 (37%), Positives = 244/440 (55%), Gaps = 56/440 (12%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
INPA I V A + D D A AA AF+ W + +AR+R ++ + ADL+ + E+
Sbjct: 2 INPATGEVIGEVPDAGAADADAAIDAAAAAFK-TWRKTTARERAAILRRWADLIRERAED 60
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKRE 390
LA + +L+ G A + V + ++FA +I G TIP + ++
Sbjct: 61 LARLLTLEQGKPLAEA-RGEVDYAASFLEWFAEEARRIYGRTIP---SPAPGKRILVIKQ 116
Query: 391 PIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGV 450
P+GV ITPWN+P M++ K+AP LAAG TVV+KP+E +PL+AL LAEL+ AG P GV
Sbjct: 117 PVGVVAAITPWNFPAAMITRKIAPALAAGCTVVLKPAEETPLSALALAELAEEAGLPAGV 176
Query: 451 INILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVI 510
+N++ G+ A GEA+ ++RK+ FTGST G +M AA+ +K+VSLELGG +P ++
Sbjct: 177 LNVVTGSPAEIGEALCASPRVRKISFTGSTAVGKLLMAQAAD-TVKRVSLELGGNAPFIV 235
Query: 511 FDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM-------- 562
FDD +LDKAV ++ F N G+ C+ A RI+V +IYD F+EK+V VKK+
Sbjct: 236 FDDADLDKAVDGAIASKFRNAGQTCVCANRIYVHESIYDEFVEKLVERVKKLKVGNGLDE 295
Query: 563 --------NHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG------------------ 596
N +A ++K+ E A ++GA++L GGKRL G
Sbjct: 296 GTDMGPLINERA-VEKVEALVEDAVAKGAKVLTGGKRLGLGGYFYEPTVLTDVTDDMLIM 354
Query: 597 ---------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTY 641
D VI RAN T YGLA+ +FT D+ +A + +++G V INT
Sbjct: 355 NEETFGPVAPIIPFDTEDEVIARANDTPYGLAAYVFTRDLARAWRVAEALEAGMVGINTG 414
Query: 642 NKTDVAAPFGGFKQSGFGKD 661
+D APFGG K+SG G++
Sbjct: 415 LISDAEAPFGGVKESGLGRE 434
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant glycine
betaine, via the second of two oxidation steps from
exogenously supplied choline or betaine aldehyde. This
choline-glycine betaine synthesis pathway can be found
in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional regulator
(betI). Similar to E.coli, betaine synthesis in
Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by the
absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and Si.meliloti.
Betaine aldehyde dehydrogenase is a member of the
aldehyde dehydrogenase family (pfam00171) [Cellular
processes, Adaptations to atypical conditions].
Length = 467
Score = 419 bits (1078), Expect = e-140
Identities = 189/463 (40%), Positives = 263/463 (56%), Gaps = 58/463 (12%)
Query: 254 FINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDR 313
FI+GE+V G++ E INPAN I +V A +DV+ A AA +A GEW+ +S +R
Sbjct: 1 FIDGEYVEDSAGTTREIINPANGEVIATVHAATPEDVERAIAAARRAQ-GEWAAMSPMER 59
Query: 314 GHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTI 373
G ++ + ADL+ + EELA +E+LD+G + + D +++FAG + G I
Sbjct: 60 GRILRRAADLIRERNEELAKLETLDTGKTLQETIVADMDSGADVFEFFAGLAPALNGEII 119
Query: 374 PIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLT 433
P+ +F +T REP+GVC I WNYPL + SWK+AP LAAGN +V KPSE +PLT
Sbjct: 120 PL----GGPSFAYTIREPLGVCVGIGAWNYPLQIASWKIAPALAAGNAMVFKPSENTPLT 175
Query: 434 ALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAES 493
ALK+AE+ AG PKGV N++ G GA G + H + KV FTG TG KIM +AA
Sbjct: 176 ALKVAEIMEEAGLPKGVFNVVQGDGAEVGPLLVNHPDVAKVSFTGGVPTGKKIMAAAAG- 234
Query: 494 NLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLE 553
+LK V++ELGGKSPL++FDD +L+ AV +M G FF+ G+ C + R+FV I + FL
Sbjct: 235 HLKHVTMELGGKSPLIVFDDADLESAVDGAMLGNFFSAGQVCSNGTRVFVHKKIKERFLA 294
Query: 554 KVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG-- 596
++V +++ AH DK++ Y EK K+EGA L GG R + G
Sbjct: 295 RLVERTERIKLGDPFDEATEMGPLISAAHRDKVLSYIEKGKAEGATLATGGGRPENVGLQ 354
Query: 597 -----------------------------------DVDAVIKRANSTEYGLASGIFTSDI 621
D D VI RAN TEYGLA G+FT+D+
Sbjct: 355 NGFFVEPTVFADCTDDMTIVREEIFGPVMTVLTFSDEDEVIARANDTEYGLAGGVFTADL 414
Query: 622 NKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDLDI 664
+A D++++GTV+INTYN APFGG+KQSG G++
Sbjct: 415 GRAHRVADQLEAGTVWINTYNLYPAEAPFGGYKQSGIGRENGK 457
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 415 bits (1070), Expect = e-138
Identities = 173/461 (37%), Positives = 263/461 (57%), Gaps = 59/461 (12%)
Query: 252 QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
L+I+G +V + G + E INPA + +VQ A DV+ A +A++ + W+ ++A
Sbjct: 8 SLYIDGAYVEATSGETFEVINPATGEVLATVQAATPADVEAAVASAKQGQK-IWAAMTAM 66
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
+R ++ + D++ + +ELA +E+LD+G + D +Y+AG + G
Sbjct: 67 ERSRILRRAVDILRERNDELAALETLDTGKPIQETSVVDIVTGADVLEYYAGLAPALEGE 126
Query: 372 TIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSP 431
IP+ +F +T+REP+GVC I WNYP+ + WK AP LAAGN ++ KPSEV+P
Sbjct: 127 QIPLR----GGSFVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIFKPSEVTP 182
Query: 432 LTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
LTALKLAE+ AG P GV N++ G G V G +++H I KV FTG TG K+M +AA
Sbjct: 183 LTALKLAEIYTEAGLPDGVFNVVQGDGRV-GAWLTEHPDIAKVSFTGGVPTGKKVMAAAA 241
Query: 492 ESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAF 551
S LK+V++ELGGKSPL++FDD +LD+A ++M F++ G+ C + R+FV +I AF
Sbjct: 242 AS-LKEVTMELGGKSPLIVFDDADLDRAADIAMLANFYSSGQVCTNGTRVFVQKSIKAAF 300
Query: 552 LEKVVTEVKKM----------NH-----KAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG 596
+++ V+++ N AH DK++ Y EK K+EGARLL GG+RL G
Sbjct: 301 EARLLERVERIRIGDPMDPATNFGPLVSFAHRDKVLGYIEKGKAEGARLLCGGERLTEGG 360
Query: 597 -------------------------------------DVDAVIKRANSTEYGLASGIFTS 619
D D VI RAN TEYGLA+G+FT+
Sbjct: 361 FANGAFVAPTVFTDCTDDMTIVREEIFGPVMSVLTFDDEDEVIARANDTEYGLAAGVFTA 420
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGK 660
D+++A + ++++G +INT+ ++ P GG+KQSG G+
Sbjct: 421 DLSRAHRVIHQLEAGICWINTWGESPAEMPVGGYKQSGIGR 461
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 406 bits (1045), Expect = e-135
Identities = 187/460 (40%), Positives = 269/460 (58%), Gaps = 53/460 (11%)
Query: 252 QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE-GEWSRLSA 310
+LFINGEFV++ G + E +P I + + +DVD+A AA +AF+ G W R+S
Sbjct: 22 KLFINGEFVDAASGKTFETRDPRTGEVIARIAEGDKEDVDLAVKAAREAFDHGPWPRMSG 81
Query: 311 RDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILG 370
+RG +M K ADL+E++ EELA ++++D+G ++ L + + +Y+AG DKI G
Sbjct: 82 FERGRIMMKFADLIEEHIEELAALDTIDAGKLFALGKAVDIPAAAGLLRYYAGAADKIHG 141
Query: 371 STIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVS 430
T+ ++ +T +EPIGV G I PWN+P M K+AP LAAG T+V+KP+E +
Sbjct: 142 ETLKMSRQL----QGYTLKEPIGVVGHIIPWNFPSTMFFMKVAPALAAGCTMVVKPAEQT 197
Query: 431 PLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSA 490
PL+AL A L+ AG P GVIN++ G G G AI+ H+ + KV FTGST G KIM++A
Sbjct: 198 PLSALFYAHLAKLAGVPDGVINVVTGFGPTAGAAIASHMDVDKVSFTGSTEVGRKIMQAA 257
Query: 491 AESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDA 550
A SNLK+VSLELGGKSPL+IFDD ++D AV +++ G+F+NKGE C+++ R++V IYD
Sbjct: 258 ATSNLKQVSLELGGKSPLLIFDDADVDMAVDLALLGIFYNKGEICVASSRVYVQEGIYDE 317
Query: 551 FLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRP 595
F++K+V + K K +K++ Y E K EGA LL GGK
Sbjct: 318 FVKKLVEKAKDWVVGDPFDPRARQGPQVDKQQFEKILSYIEHGKREGATLLTGGKPCGDK 377
Query: 596 G---------------------------------DVDAVIKRANSTEYGLASGIFTSDIN 622
G V+ IK+AN+T+YGLA+GI T D++
Sbjct: 378 GYYIEPTIFTDVTEDMKIAQDEIFGPVMSLMKFKTVEEAIKKANNTKYGLAAGIVTKDLD 437
Query: 623 KAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
A I +GT+++N Y D PFGG+K SGFG+D
Sbjct: 438 VANTVSRSIRAGTIWVNCYFAFDPDCPFGGYKMSGFGRDQ 477
>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent
4-trimethylaminobutyraldehyde dehydrogenase, ALDH family
9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde
dehydrogenase (TMABADH, EC=1.2.1.47), also known as
aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in
humans, is a cytosolic tetramer which catalyzes the
oxidation of gamma-aminobutyraldehyde involved in
4-aminobutyric acid (GABA) biosynthesis and also
oxidizes betaine aldehyde
(gamma-trimethylaminobutyraldehyde) which is involved in
carnitine biosynthesis.
Length = 457
Score = 399 bits (1027), Expect = e-133
Identities = 174/444 (39%), Positives = 255/444 (57%), Gaps = 61/444 (13%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
I PA + +V A ++DVD+A +A+ A + EWS S +RG ++ K ADL+ + +E
Sbjct: 2 IEPATGEVLATVHCAGAEDVDLAVKSAKAAQK-EWSATSGMERGRILRKAADLLRERNDE 60
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKRE 390
+A +E++D+G A + + S D +Y+AG + G +P+ P +F +T+RE
Sbjct: 61 IARLETIDNGKPIEEA-RVDIDSSADCLEYYAGLAPTLSGEHVPL----PGGSFAYTRRE 115
Query: 391 PIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGV 450
P+GVC I WNYP+ + SWK AP LA GN +V KPS +PLTAL LAE+ AG P GV
Sbjct: 116 PLGVCAGIGAWNYPIQIASWKSAPALACGNAMVYKPSPFTPLTALLLAEILTEAGLPDGV 175
Query: 451 INILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVI 510
N++ G G TG+ + +H + KV FTGS TG K+M +AA +K V+LELGGKSPL+I
Sbjct: 176 FNVVQGGGE-TGQLLCEHPDVAKVSFTGSVPTGKKVMSAAA-KGIKHVTLELGGKSPLII 233
Query: 511 FDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKMN------- 563
FDD +L+ AV +M F ++G+ C + R+FV +I D F E++V KK+
Sbjct: 234 FDDADLENAVNGAMMANFLSQGQVCSNGTRVFVQRSIKDEFTERLVERTKKIRIGDPLDE 293
Query: 564 --------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD-----------RP--------- 595
+ HL+K++ Y E AK EGA++L GG+R+ P
Sbjct: 294 DTQMGALISEEHLEKVLGYIESAKQEGAKVLCGGERVVPEDGLENGFYVSPCVLTDCTDD 353
Query: 596 ---------GDV---------DAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVF 637
G V + VI+RAN T YGLA+G+FT D+ +A + ++ +GT +
Sbjct: 354 MTIVREEIFGPVMSILPFDTEEEVIRRANDTTYGLAAGVFTRDLQRAHRVIAQLQAGTCW 413
Query: 638 INTYNKTDVAAPFGGFKQSGFGKD 661
INTYN + V PFGG+KQSGFG++
Sbjct: 414 INTYNISPVEVPFGGYKQSGFGRE 437
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 398 bits (1025), Expect = e-132
Identities = 165/463 (35%), Positives = 246/463 (53%), Gaps = 58/463 (12%)
Query: 250 PNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLS 309
+L INGE V G NPA + + A++ VD A AA+ AF WS+ +
Sbjct: 2 QTKLLINGELVAG-EGEKQPVYNPATGEVLAEIAEASAAQVDAAVAAADAAFPE-WSQTT 59
Query: 310 ARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKIL 369
++R + KLAD +E+N +E A +ESL+ G LAL + +D +++FAG +
Sbjct: 60 PKERAEALLKLADAIEENADEFARLESLNCGKPLHLALNDEIPAIVDVFRFFAGAARCLE 119
Query: 370 GSTIPIAHARPNSNFT-FTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
G A T +R+P+GV I PWNYPLMM +WK+AP LAAGNTVV+KPSE
Sbjct: 120 GK----AAGEYLEGHTSMIRRDPVGVVASIAPWNYPLMMAAWKLAPALAAGNTVVLKPSE 175
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMK 488
++PLTALKLAEL+ P GV+N++ G GA G+A+ H K+R V TGS TG ++
Sbjct: 176 ITPLTALKLAELAADI-LPPGVLNVVTGRGATVGDALVGHPKVRMVSLTGSIATGKHVLS 234
Query: 489 SAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
+AA ++K+ LELGGK+P+++FDD +LD V ++N G++C +A RI+ IY
Sbjct: 235 AAA-DSVKRTHLELGGKAPVIVFDDADLDAVVEGIRTFGYYNAGQDCTAACRIYAQRGIY 293
Query: 549 DAFLEKVV---------------TEVKKMNHKAHLDKLIDYCEKAKSEG-ARLLIGGKRL 592
D + K+ TE+ + AH D++ + E+AK+ G R++ GG+
Sbjct: 294 DDLVAKLAAAVATLKVGDPDDEDTELGPLISAAHRDRVAGFVERAKALGHIRVVTGGEAP 353
Query: 593 DRPG---------------------------------DVDAVIKRANSTEYGLASGIFTS 619
D G D D ++ AN ++YGLAS ++T
Sbjct: 354 DGKGYYYEPTLLAGARQDDEIVQREVFGPVVSVTPFDDEDQAVRWANDSDYGLASSVWTR 413
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
D+ +A ++ G ++NT+ P GG KQSG+GKD+
Sbjct: 414 DVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKQSGYGKDM 456
>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase
superfamily. The aldehyde dehydrogenase superfamily
(ALDH-SF) of NAD(P)+-dependent enzymes, in general,
oxidize a wide range of endogenous and exogenous
aliphatic and aromatic aldehydes to their corresponding
carboxylic acids and play an important role in
detoxification. Besides aldehyde detoxification, many
ALDH isozymes possess multiple additional catalytic and
non-catalytic functions such as participating in
metabolic pathways, or as binding proteins, or
osmoregulants, to mention a few. The enzyme has three
domains, a NAD(P)+ cofactor-binding domain, a catalytic
domain, and a bridging domain; and the active enzyme is
generally either homodimeric or homotetrameric. The
catalytic mechanism is proposed to involve cofactor
binding, resulting in a conformational change and
activation of an invariant catalytic cysteine
nucleophile. The cysteine and aldehyde substrate form an
oxyanion thiohemiacetal intermediate resulting in
hydride transfer to the cofactor and formation of a
thioacylenzyme intermediate. Hydrolysis of the
thioacylenzyme and release of the carboxylic acid
product occurs, and in most cases, the reduced cofactor
dissociates from the enzyme. The evolutionary
phylogenetic tree of ALDHs appears to have an initial
bifurcation between what has been characterized as the
classical aldehyde dehydrogenases, the ALDH family
(ALDH) and extended family members or aldehyde
dehydrogenase-like (ALDH-L) proteins. The ALDH proteins
are represented by enzymes which share a number of
highly conserved residues necessary for catalysis and
cofactor binding and they include such proteins as
retinal dehydrogenase, 10-formyltetrahydrofolate
dehydrogenase, non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase,
delta(1)-pyrroline-5-carboxylate dehydrogenases,
alpha-ketoglutaric semialdehyde dehydrogenase,
alpha-aminoadipic semialdehyde dehydrogenase, coniferyl
aldehyde dehydrogenase and succinate-semialdehyde
dehydrogenase. Included in this larger group are all
human, Arabidopsis, Tortula, fungal, protozoan, and
Drosophila ALDHs identified in families ALDH1 through
ALDH22 with the exception of families ALDH18, ALDH19,
and ALDH20 which are present in the ALDH-like group. The
ALDH-like group is represented by such proteins as
gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA
reductase, and coenzyme A acylating aldehyde
dehydrogenase. All of these proteins have a conserved
cysteine that aligns with the catalytic cysteine of the
ALDH group.
Length = 367
Score = 391 bits (1007), Expect = e-131
Identities = 162/373 (43%), Positives = 232/373 (62%), Gaps = 29/373 (7%)
Query: 296 AAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSI 355
AA AF+ W+ L +R ++ K+ADL+E+ +EELA +E+L++G AL V +I
Sbjct: 2 AARAAFK-AWAALPPAERAAILRKIADLLEERREELAALETLETGKPIEEAL-GEVARAI 59
Query: 356 DTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPC 415
DT++Y AG DK+ G +P + +REP+GV G+ITPWN+PL++ +WK+AP
Sbjct: 60 DTFRYAAGLADKLGGPELPSPDPGG---EAYVRREPLGVVGVITPWNFPLLLAAWKLAPA 116
Query: 416 LAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVG 475
LAAGNTVV+KPSE++PLTAL LAEL AG P GV+N++PG G G A+ H ++ K+
Sbjct: 117 LAAGNTVVLKPSELTPLTALALAELLQEAGLPPGVVNVVPGGGDEVGAALLSHPRVDKIS 176
Query: 476 FTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENC 535
FTGST G IMK+AAE NLK V+LELGGKSP+++ +D +LD AV ++ G FFN G+ C
Sbjct: 177 FTGSTAVGKAIMKAAAE-NLKPVTLELGGKSPVIVDEDADLDAAVEGAVFGAFFNAGQIC 235
Query: 536 ISAGRIFVDSNIYDAFLEKVVTEVKKMNHKAHLDKLIDYCEKAKSEGARLLIGG-----K 590
+A R+ V +IYD F+EK+VT ++ + A+ I G
Sbjct: 236 TAASRLLVHESIYDEFVEKLVT-------------VLVDVD-PDMPIAQEEIFGPVLPVI 281
Query: 591 RLDRPGDVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNK-TDVAAP 649
R D + I AN TEYGL +G+FT D+N+A+ +++ +GTV+IN + AP
Sbjct: 282 RFK---DEEEAIALANDTEYGLTAGVFTRDLNRALRVAERLRAGTVYINDSSIGVGPEAP 338
Query: 650 FGGFKQSGFGKDL 662
FGG K SG G++
Sbjct: 339 FGGVKNSGIGREG 351
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the aldehyde
dehydrogenase (locus SSP0762) from Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 and other
similar sequences, are included in this CD.
Length = 466
Score = 391 bits (1007), Expect = e-129
Identities = 168/460 (36%), Positives = 234/460 (50%), Gaps = 66/460 (14%)
Query: 253 LFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARD 312
+I+G +V G +++ INPA E I +V + + DVD A AA +AF WS S +
Sbjct: 1 FYIDGAWVAPAGTETIDVINPATEEVIGTVPLGTAADVDRAVAAARRAFPA-WSATSVEE 59
Query: 313 RGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGST 372
R L+ ++A+ E +ELA +L+ GA TLA VG+ I + A L
Sbjct: 60 RAALLERIAEAYEARADELAQAITLEMGAPITLARAAQVGLGIGHLRAAA----DALK-D 114
Query: 373 IPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPL 432
R NS REPIGVCGLITPWN+PL + K+AP LAAG TVV+KPSEV+PL
Sbjct: 115 FEFEERRGNSLVV---REPIGVCGLITPWNWPLNQIVLKVAPALAAGCTVVLKPSEVAPL 171
Query: 433 TALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAE 492
+A+ LAE+ AG P GV N++ G G V GEA+S H + V FTGST G ++ ++AA+
Sbjct: 172 SAIILAEILDEAGLPAGVFNLVNGDGPVVGEALSAHPDVDMVSFTGSTRAGKRVAEAAAD 231
Query: 493 SNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFL 552
+ +K+V+LELGGKS +I DD +L+KAV + F N G++C + R+ V + Y
Sbjct: 232 T-VKRVALELGGKSANIILDDADLEKAVPRGVAACFANSGQSCNAPTRMLVPRSRYAEAE 290
Query: 553 EKVVTEVKK---------------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRP-- 595
E + + A D++ Y +K EGARL+ GG RP
Sbjct: 291 EIAAAAAEAYVVGDPRDPATTLGPLASAAQFDRVQGYIQKGIEEGARLVAGG--PGRPEG 348
Query: 596 ------------GDV--DAVIKR----------------------ANSTEYGLASGIFTS 619
DV D I R AN T YGLA ++++
Sbjct: 349 LERGYFVKPTVFADVTPDMTIAREEIFGPVLSIIPYDDEDEAIAIANDTPYGLAGYVWSA 408
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFG 659
D +A ++ +G V IN + APFGG+KQSG G
Sbjct: 409 DPERARAVARRLRAGQVHIN-GAAFNPGAPFGGYKQSGNG 447
>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent
gamma-aminobutyraldehyde dehydrogenase YdcW-like.
NAD+-dependent, tetrameric, gamma-aminobutyraldehyde
dehydrogenase (ABALDH), YdcW of Escherichia coli K12,
catalyzes the oxidation of gamma-aminobutyraldehyde to
gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl
medium-chain aldehydes, but with a lower catalytic
efficiency.
Length = 450
Score = 382 bits (984), Expect = e-126
Identities = 170/442 (38%), Positives = 245/442 (55%), Gaps = 55/442 (12%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
++PA I +V A++ DVD A AA AF W R + +R + KLAD +E+N EE
Sbjct: 2 VDPATGEEIATVPDASAADVDAAVAAAHAAFPS-WRRTTPAERSKALLKLADAIEENAEE 60
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKRE 390
LA +ES ++G L + ++D +++FAG + G P A + + +RE
Sbjct: 61 LAALESRNTGKPLHLVRDDELPGAVDNFRFFAGAARTLEG---PAAGEYLPGHTSMIRRE 117
Query: 391 PIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGV 450
PIGV I PWNYPLMM +WK+AP LAAGNTVV+KPSE +PLT L LAEL+ P GV
Sbjct: 118 PIGVVAQIAPWNYPLMMAAWKIAPALAAGNTVVLKPSETTPLTTLLLAELAAE-VLPPGV 176
Query: 451 INILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVI 510
+N++ G GA G+A+ H ++R V TGS TG K+ ++AA LK+V LELGGK+P+++
Sbjct: 177 VNVVCGGGASAGDALVAHPRVRMVSLTGSVRTGKKVARAAA-DTLKRVHLELGGKAPVIV 235
Query: 511 FDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKK--------- 561
FDD +LD AV ++N G++C +A R++V ++YD F+ +V V
Sbjct: 236 FDDADLDAAVAGIATAGYYNAGQDCTAACRVYVHESVYDEFVAALVEAVSAIRVGDPDDE 295
Query: 562 ------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG------------------- 596
+N A +++ + E+A AR+L GG+R + PG
Sbjct: 296 DTEMGPLNSAAQRERVAGFVERAP-AHARVLTGGRRAEGPGYFYEPTVVAGVAQDDEIVQ 354
Query: 597 --------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYN 642
D D I+ AN EYGLAS ++T D+ +AM ++D GTV++NT+
Sbjct: 355 EEIFGPVVTVQPFDDEDEAIELANDVEYGLASSVWTRDVGRAMRLSARLDFGTVWVNTHI 414
Query: 643 KTDVAAPFGGFKQSGFGKDLDI 664
P GGFKQSG+GKDL I
Sbjct: 415 PLAAEMPHGGFKQSGYGKDLSI 436
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 376 bits (967), Expect = e-123
Identities = 172/466 (36%), Positives = 259/466 (55%), Gaps = 59/466 (12%)
Query: 251 NQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAF-EGEWSRLS 309
QL ING+FV++ G + ++P I V +++DV+ A AA KAF EG W +++
Sbjct: 58 TQLLINGQFVDAASGKTFPTLDPRTGEVIAHVAEGDAEDVNRAVAAARKAFDEGPWPKMT 117
Query: 310 ARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKIL 369
A +R ++ + ADL+E++ +ELA +E+ D+G Y + K + M ++Y+AGW DKI
Sbjct: 118 AYERSRILLRFADLLEKHNDELAALETWDNGKPYEQSAKAELPMFARLFRYYAGWADKIH 177
Query: 370 GSTIP---IAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKP 426
G T+P H + T EPIGV G I PWN+PL+M +WK+ P LA GNT+V+K
Sbjct: 178 GLTVPADGPHHVQ-------TLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKT 230
Query: 427 SEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKI 486
+E +PL+AL A+L AG P GV+N++ G G G A++ H+ + K+ FTGST TG +
Sbjct: 231 AEQTPLSALYAAKLLHEAGLPPGVLNVVSGFGPTAGAALASHMDVDKLAFTGSTDTGKIV 290
Query: 487 MKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSN 546
++ AA+SNLK V+LELGGKSP ++ +D ++DKAV ++ +FFN+G+ C + R FV
Sbjct: 291 LELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHER 350
Query: 547 IYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKR 591
+YD F+EK K +K++ Y + GA L GG R
Sbjct: 351 VYDEFVEKAKARALKRVVGDPFKKGVEQGPQIDSEQFEKILRYIKSGVESGATLECGGDR 410
Query: 592 LDRPG---------------------------------DVDAVIKRANSTEYGLASGIFT 618
G D+D VI+RAN+T YGLA+G+FT
Sbjct: 411 FGSKGYYIQPTVFSNVQDDMLIAQDEIFGPVQSILKFKDLDEVIRRANNTRYGLAAGVFT 470
Query: 619 SDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDLDI 664
+++ A + GTV++N ++ D A PFGG+K SG G++ I
Sbjct: 471 QNLDTANTLSRALRVGTVWVNCFDVFDAAIPFGGYKMSGIGREKGI 516
>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent
alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like.
Kinetic studies of the Bacillus subtilis ALDH-like ycbD
protein, which is involved in d-glucarate/d-galactarate
utilization, reveal that it is a NADP+-dependent,
alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH).
KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent
conversion of KGSA to alpha-ketoglutarate.
Interestingly, the NADP+-dependent, tetrameric,
2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an
enzyme involved in the catabolic pathway for D-arabinose
in Sulfolobus solfataricus, also clusters in this group.
This CD shows a distant phylogenetic relationship to the
Azospirillum brasilense KGSADH-II (-III) group.
Length = 473
Score = 371 bits (956), Expect = e-122
Identities = 166/459 (36%), Positives = 247/459 (53%), Gaps = 62/459 (13%)
Query: 254 FINGEFVNSVGGSSMECINPANES-TICSVQMANSDDVDIAALAAEKAFEGEWSRLSARD 312
+I+GE+V GG E NP++ S + A+++D D A AA AF W R S
Sbjct: 4 YIDGEWV--AGGDGEENRNPSDTSDVVGKYARASAEDADAAIAAAAAAFPA-WRRTSPEA 60
Query: 313 RGHLMFKLADLMEQNKEELATIESLDSGAVYTLAL-KTHVGMSIDTWKYFAGWCDKILGS 371
R ++ K D +E KEELA + + + G TL + V + ++Y+AG ++ G
Sbjct: 61 RADILDKAGDELEARKEELARLLTREEGK--TLPEARGEVTRAGQIFRYYAGEALRLSGE 118
Query: 372 TIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSP 431
T+P RP T REP+GV GLITPWN+P+ + +WK+AP LA GNTVV KP+E++P
Sbjct: 119 TLP--STRPGV-EVETTREPLGVVGLITPWNFPIAIPAWKIAPALAYGNTVVFKPAELTP 175
Query: 432 LTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
+A L E+ AG P GV N++ G+G+ G+A+ +H + V FTGST G +I +AA
Sbjct: 176 ASAWALVEILEEAGLPAGVFNLVMGSGSEVGQALVEHPDVDAVSFTGSTAVGRRIAAAAA 235
Query: 492 ESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAF 551
+ +V LE+GGK+PLV+ DD +LD AV ++ G FF+ G+ C ++ R+ V I+D F
Sbjct: 236 -ARGARVQLEMGGKNPLVVLDDADLDLAVECAVQGAFFSTGQRCTASSRLIVTEGIHDRF 294
Query: 552 LEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRP- 595
+E +V K + + L+K + Y E A+SEGA+L+ GG+RL RP
Sbjct: 295 VEALVERTKALKVGDALDEGVDIGPVVSERQLEKDLRYIEIARSEGAKLVYGGERLKRPD 354
Query: 596 -------------------------GDVDAVIK---------RANSTEYGLASGIFTSDI 621
G V AVI+ AN TE+GL++GI T+ +
Sbjct: 355 EGYYLAPALFAGVTNDMRIAREEIFGPVAAVIRVRDYDEALAIANDTEFGLSAGIVTTSL 414
Query: 622 NKAMYFVDKIDSGTVFIN-TYNKTDVAAPFGGFKQSGFG 659
A +F ++++G V +N D PFGG K S +G
Sbjct: 415 KHATHFKRRVEAGVVMVNLPTAGVDYHVPFGGRKGSSYG 453
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 369 bits (950), Expect = e-121
Identities = 156/442 (35%), Positives = 237/442 (53%), Gaps = 59/442 (13%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
+P+ + + DVD A AA +AFE W RLS +RG L+ ++A L+ ++ +E
Sbjct: 2 FDPSTGEVFARIARGGAADVDRAVQAARRAFESGWLRLSPAERGRLLLRIARLIREHADE 61
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKRE 390
LA +ESLD+G T A + V + ++Y+ G DK+ G TIP+ F +T RE
Sbjct: 62 LARLESLDTGKPLTQA-RADVEAAARYFEYYGGAADKLHGETIPLG----PGYFVYTVRE 116
Query: 391 PIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGV 450
P GV G I PWNYPL + +AP LAAGN VV+KP+E +PLTAL+LAEL+ AG P G
Sbjct: 117 PHGVTGHIIPWNYPLQITGRSVAPALAAGNAVVVKPAEDAPLTALRLAELAEEAGLPAGA 176
Query: 451 INILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVI 510
+N++ G GA G A+ H + + FTGS TG+ +M++AAE N+ V+LELGGKSP ++
Sbjct: 177 LNVVTGLGAEAGAALVAHPGVDHISFTGSVETGIAVMRAAAE-NVVPVTLELGGKSPQIV 235
Query: 511 FDDYNLDKAVRMSMGGVFFNKGENCISAG-RIFVDSNIYDAFLEKVVTEVKK-------- 561
F D +L+ A+ + + + N G+ C SAG R+ V +IYD LE++V +
Sbjct: 236 FADADLEAALPVVVNAIIQNAGQTC-SAGSRLLVHRSIYDEVLERLVERFRALRVGPGLE 294
Query: 562 ------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRP-------------------- 595
+ LD++ + +A++ GAR++ GG+ +
Sbjct: 295 DPDLGPLISAKQLDRVEGFVARARARGARIVAGGRIAEGAPAGGYFVAPTLLDDVPPDSR 354
Query: 596 ----------------GDVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFIN 639
D I AN T+YGL +G++T D ++A+ ++ +G VF+N
Sbjct: 355 LAQEEIFGPVLAVMPFDDEAEAIALANGTDYGLVAGVWTRDGDRALRVARRLRAGQVFVN 414
Query: 640 TYNKT-DVAAPFGGFKQSGFGK 660
Y + PFGG K+SG G+
Sbjct: 415 NYGAGGGIELPFGGVKKSGHGR 436
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 362 bits (931), Expect = e-118
Identities = 168/465 (36%), Positives = 260/465 (55%), Gaps = 64/465 (13%)
Query: 253 LFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARD 312
FI+GEFV S G + E ++PA + SV + DVD AA AA++AF+ W+ L A +
Sbjct: 3 HFIDGEFVPSESGETFETLSPATNEVLGSVARGGAADVDRAAKAAKEAFK-RWAELKAAE 61
Query: 313 RGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWC-DKILGS 371
R + K+ADL+EQ+ +E+A +E LD G + V + + +++FA C + + G
Sbjct: 62 RKRYLHKIADLIEQHADEIAVLECLDCGQPLRQTRQQ-VIRAAENFRFFADKCEEAMDGR 120
Query: 372 TIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSP 431
T P+ +++ +T R P+G GLITPWN P M+ +WK+AP LA GNTVV+KP+E SP
Sbjct: 121 TYPV-----DTHLNYTVRVPVGPVGLITPWNAPFMLSTWKIAPALAFGNTVVLKPAEWSP 175
Query: 432 LTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
LTA +LAE++ AG P GV N++ G G G+A+ H ++ V FTG T TG IM++ A
Sbjct: 176 LTAARLAEIAKEAGLPDGVFNLVHGFGEEAGKALVAHPDVKAVSFTGETATGSIIMRNGA 235
Query: 492 ESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAF 551
++ LK+ S+ELGGKSP+++FDD +L++A+ + +F GE C ++ R+ V +I + F
Sbjct: 236 DT-LKRFSMELGGKSPVIVFDDADLERALDAVVFMIFSFNGERCTASSRLLVQESIAEDF 294
Query: 552 LEKVV---------------TEVKKMNHKAHLDKLIDYCEKAKSEGARLLIGGKRLD--- 593
+EK+V TEV + H HL K++ Y E A+ EGA +L+GG+R
Sbjct: 295 VEKLVERVRAIRVGHPLDPETEVGPLIHPEHLAKVLGYVEAAEKEGATILVGGERAPTFR 354
Query: 594 --RPGD---------VDA--------------------------VIKRANSTEYGLASGI 616
G A I++AN T YGLA +
Sbjct: 355 GEDLGRGNYVLPTVFTGADNHMRIAQEEIFGPVLTVIPFKDEEEAIEKANDTRYGLAGYV 414
Query: 617 FTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKD 661
+T+D+ +A +++G +++N+ N + PFGG K SG G++
Sbjct: 415 WTNDVGRAHRVALALEAGMIWVNSQNVRHLPTPFGGVKASGIGRE 459
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences are
present in this CD.
Length = 468
Score = 360 bits (926), Expect = e-117
Identities = 172/455 (37%), Positives = 248/455 (54%), Gaps = 55/455 (12%)
Query: 254 FINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDR 313
+INGEFV S G +++ +NPA + +V A ++D D A AAE A + W RL A +R
Sbjct: 1 YINGEFVPSSSGETIDVLNPATGEVVATVPAATAEDADRAVDAAEAAQK-AWERLPAIER 59
Query: 314 GHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTI 373
+ KLADL+ +N +ELA + + G +LA + V + D Y A W +I G I
Sbjct: 60 AAYLRKLADLIRENADELAKLIVEEQGKTLSLA-RVEVEFTADYIDYMAEWARRIEGEII 118
Query: 374 PIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLT 433
P RPN N F + PIGV I PWN+P +++ K+AP L GNT+V+KPSE +PL
Sbjct: 119 P--SDRPNENI-FIFKVPIGVVAGILPWNFPFFLIARKLAPALVTGNTIVIKPSEETPLN 175
Query: 434 ALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAES 493
AL+ AEL AG P GV+NI+ G G+V G+A+ H K+ + TGST G KIM++AAE
Sbjct: 176 ALEFAELVDEAGLPAGVLNIVTGRGSVVGDALVAHPKVGMISLTGSTEAGQKIMEAAAE- 234
Query: 494 NLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLE 553
N+ KVSLELGGK+P ++ D +LD AV+ + N G+ C A R++V +IYD F+E
Sbjct: 235 NITKVSLELGGKAPAIVMKDADLDLAVKAIVDSRIINCGQVCTCAERVYVHEDIYDEFME 294
Query: 554 KVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD-RPG- 596
K+V ++K + ++A LDK+ + E+A GA LL GGKR + G
Sbjct: 295 KLVEKMKAVKVGDPFDAATDMGPLVNEAALDKVEEMVERAVEAGATLLTGGKRPEGEKGY 354
Query: 597 --------------------------------DVDAVIKRANSTEYGLASGIFTSDINKA 624
+D I+ AN +EYGL S I+T ++N A
Sbjct: 355 FYEPTVLTNVRQDMEIVQEEIFGPVLPVVKFSSLDEAIELANDSEYGLTSYIYTENLNTA 414
Query: 625 MYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFG 659
M ++++ G +IN N + G+K+SG G
Sbjct: 415 MRATNELEFGETYINRENFEAMQGFHAGWKKSGLG 449
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene degradation,
and the Novosphingobium aromaticivorans NahF
salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 360 bits (927), Expect = e-117
Identities = 163/485 (33%), Positives = 255/485 (52%), Gaps = 66/485 (13%)
Query: 253 LFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARD 312
FI+G V ++ NPA E I SV A DVD A +A +AF W++ + +
Sbjct: 2 HFIDGRPVAGQSEKRLDITNPATEQVIASVASATEADVDAAVASAWRAFVSAWAKTTPAE 61
Query: 313 RGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGST 372
RG ++ +LADL+EQ+ EELA +E+L SG L+ VG S + +YFAGW KI G T
Sbjct: 62 RGRILLRLADLIEQHGEELAQLETLCSGKSIHLSRAFEVGQSANFLRYFAGWATKINGET 121
Query: 373 IPIAHARPN-SNFT-FTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVS 430
+ + +T FT+REP+GV I PWN+ +M+ WK+ LA G T+V+KPSE +
Sbjct: 122 LAPSIPSMQGERYTAFTRREPVGVVAGIVPWNFSVMIAVWKIGAALATGCTIVIKPSEFT 181
Query: 431 PLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSA 490
PLT L++AEL+ AG P GV+N++ G GAV G + H + KV FTGS TG KI + A
Sbjct: 182 PLTLLRVAELAKEAGIPDGVLNVVNGKGAV-GAQLISHPDVAKVSFTGSVATGKKIGRQA 240
Query: 491 AESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDA 550
A S+L +V+LELGGK+ D ++D V + F ++G+ C + R +V + +D
Sbjct: 241 A-SDLTRVTLELGGKNAAAFLKDADIDWVVEGLLTAGFLHQGQVCAAPERFYVHRSKFDE 299
Query: 551 FLEKVVTEVKK---------------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRP 595
+ K+ + + ++ H DK+ Y + A++EG ++ GG+ L
Sbjct: 300 LVTKLKQALSSFQVGSPMDESVMFGPLANQPHFDKVCSYLDDARAEGDEIVRGGEALAGE 359
Query: 596 G---------------------------------DVDAVIKRANSTEYGLASGIFTSDIN 622
G D + +I+ N T +GL + ++T++++
Sbjct: 360 GYFVQPTLVLARSADSRLMREETFGPVVSFVPYEDEEELIQLINDTPFGLTASVWTNNLS 419
Query: 623 KAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDLDINKAMYFVDKIDSGTVFIN 682
KA+ ++ +I++GTV++N + D A PFGG KQSG G++ G+ FI+
Sbjct: 420 KALRYIPRIEAGTVWVNMHTFLDPAVPFGGMKQSGIGREF--------------GSAFID 465
Query: 683 TYNKT 687
Y +
Sbjct: 466 DYTEL 470
>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone
dehydrogenase-like. Included in this CD is the
L-sorbosone dehydrogenase (SNDH) from Gluconobacter
oxydans UV10. In G. oxydans, D-sorbitol is converted to
2-keto-L-gulonate (a precursor of L-ascorbic acid) in
sequential oxidation steps catalyzed by a FAD-dependent,
L-sorbose dehydrogenase and an NAD(P)+-dependent,
L-sorbosone dehydrogenase.
Length = 454
Score = 358 bits (921), Expect = e-117
Identities = 174/447 (38%), Positives = 244/447 (54%), Gaps = 65/447 (14%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFE-GEWSRLSARDRGHLMFKLADLMEQNKE 329
+PA+ + +DVD A AA KAF+ G W R+S +R ++ K+ADL+ +E
Sbjct: 2 RSPAHGVVVARYAEGTVEDVDAAVAAARKAFDKGPWPRMSGAERAAVLLKVADLIRARRE 61
Query: 330 ELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSN-----F 384
LA IE+L+SG + A + + + D W+Y A L T+ H +N
Sbjct: 62 RLALIETLESGKPISQA-RGEIEGAADLWRYAAS-----LARTL---HGDSYNNLGDDML 112
Query: 385 TFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRA 444
REPIGV G+ITPWN+P ++LS K+ LAAG TVV+KPSE + T L LAEL + A
Sbjct: 113 GLVLREPIGVVGIITPWNFPFLILSQKLPFALAAGCTVVVKPSEFTSGTTLMLAELLIEA 172
Query: 445 GFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGG 504
G P GV+NI+ G GA G+A+++H + V FTGST G I +AA NLKKVSLELGG
Sbjct: 173 GLPAGVVNIVTGYGATVGQAMTEHPDVDMVSFTGSTRVGKAIAAAAAR-NLKKVSLELGG 231
Query: 505 KSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVV-------- 556
K+P ++F D +LD A + GV+FN GE C S R+ V +I DAF+ VV
Sbjct: 232 KNPQIVFADADLDAAADAVVFGVYFNAGECCNSGSRLLVHESIADAFVAAVVARSRKVRV 291
Query: 557 -------TEVKKMNHKAHLDKLIDYCEKAKSEGARLLIGGKRLD-RPG------------ 596
T+V + ++A L K+ DY + ++EGA LL+GG+RL G
Sbjct: 292 GDPLDPETKVGAIINEAQLAKITDYVDAGRAEGATLLLGGERLASAAGLFYQPTIFTDVT 351
Query: 597 ---------------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGT 635
VD I AN T YGL++G+++ DI+ A+ +I +GT
Sbjct: 352 PDMAIAREEIFGPVLSVLTFDTVDEAIALANDTVYGLSAGVWSKDIDTALTVARRIRAGT 411
Query: 636 VFINTYNKTDVAAPFGGFKQSGFGKDL 662
V++NT+ PFGGFKQSG G++L
Sbjct: 412 VWVNTFLDGSPELPFGGFKQSGIGREL 438
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB
structure, 3B4W, and the Mycobacterium tuberculosis
H37Rv aldehyde dehydrogenase AldA (locus Rv0768)
sequence, as well as the Rhodococcus rhodochrous ALDH
involved in haloalkane catabolism, and other similar
sequences, are included in this CD.
Length = 471
Score = 357 bits (918), Expect = e-116
Identities = 157/463 (33%), Positives = 231/463 (49%), Gaps = 61/463 (13%)
Query: 253 LFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAF-EGEWSRLSAR 311
LFI G +V G +++ ++PA E + V A DVD A AA +AF G W RLS
Sbjct: 1 LFIGGRWVAPSGSETIDVVSPATEEVVGRVPEATPADVDAAVAAARRAFDNGPWPRLSPA 60
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
+R ++ +LAD +E +ELA + + ++G + + + +Y+A L
Sbjct: 61 ERAAVLRRLADALEARADELARLWTAENGMPISWSRRAQGPGPAALLRYYAA-----LAR 115
Query: 372 TIPIAHARPNSNF--TFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEV 429
P RP S +REP+GV I PWN PL + + K+AP LAAG TVV+KPS
Sbjct: 116 DFPFEERRPGSGGGHVLVRREPVGVVAAIVPWNAPLFLAALKIAPALAAGCTVVLKPSPE 175
Query: 430 SPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKS 489
+PL A LAE + AG P GV+N++P GE + +H + KV FTGST G +I
Sbjct: 176 TPLDAYLLAEAAEEAGLPPGVVNVVPA-DREVGEYLVRHPGVDKVSFTGSTAAGRRIAAV 234
Query: 490 AAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYD 549
E L +V+LELGGKS ++ DD +LD AV + N G+ C++ RI V + YD
Sbjct: 235 CGE-RLARVTLELGGKSAAIVLDDADLDAAVPGLVPASLMNNGQVCVALTRILVPRSRYD 293
Query: 550 AFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKR--- 591
+E + V + +++ Y K ++EGARL+ GG R
Sbjct: 294 EVVEALAAAVAALKVGDPLDPATQIGPLASARQRERVEGYIAKGRAEGARLVTGGGRPAG 353
Query: 592 LDR-----P---GDVD--AVIKR----------------------ANSTEYGLASGIFTS 619
LDR P DVD I + AN ++YGL+ ++T+
Sbjct: 354 LDRGWFVEPTLFADVDNDMRIAQEEIFGPVLSVIPYDDEDDAVRIANDSDYGLSGSVWTA 413
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
D+ + + +I +GTV +N + + D APFGGFKQSG G++
Sbjct: 414 DVERGLAVARRIRTGTVGVNGF-RLDFGAPFGGFKQSGIGREG 455
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II and Staphylococcus aureus
AldA1 (SACOL0154)-like. Included in this CD is the
NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII,
AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus
H16 involved in the catabolism of acetoin and ethanol,
and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane, as
well as, the uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences.
Length = 480
Score = 356 bits (916), Expect = e-116
Identities = 170/468 (36%), Positives = 248/468 (52%), Gaps = 66/468 (14%)
Query: 252 QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
FINGE+V G + NP N +C + + ++DVD+A AA +AF+ W + S
Sbjct: 2 DNFINGEWVAPSKGEYFDNYNPVNGKVLCEIPRSTAEDVDLAVDAAHEAFKT-WGKTSVA 60
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
+R +++ K+AD +E+N E LA E+LD+G L + ++ID ++YFAG GS
Sbjct: 61 ERANILNKIADRIEENLELLAVAETLDNGKPIRETLAADIPLAIDHFRYFAGVIRAQEGS 120
Query: 372 TIPIAHARPNSNF-TFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVS 430
I + + ++ EP+GV G I PWN+PL+M +WK+AP LAAGNTVV+KP+ +
Sbjct: 121 LSEI-----DEDTLSYHFHEPLGVVGQIIPWNFPLLMAAWKLAPALAAGNTVVLKPASQT 175
Query: 431 PLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSA 490
PL+ L L EL + PKGV+N++ G G+ G+ ++ H +I K+ FTGST G IM+ A
Sbjct: 176 PLSILVLMEL-IGDLLPKGVVNVVTGFGSEAGKPLASHPRIAKLAFTGSTTVGRLIMQYA 234
Query: 491 AESNLKKVSLELGGKSPLVIFDD-----YNLDKAVRMSMGGVFFNKGENCISAGRIFVDS 545
AE NL V+LELGGKSP + FDD + D G FN+GE C R V
Sbjct: 235 AE-NLIPVTLELGGKSPNIFFDDAMDADDDFDDKAEEGQLGFAFNQGEVCTCPSRALVQE 293
Query: 546 NIYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGK 590
+IYD F+E+ V + + K L+K++ Y + K EGA +L GG+
Sbjct: 294 SIYDEFIERAVERFEAIKVGNPLDPETMMGAQVSKDQLEKILSYVDIGKEEGAEVLTGGE 353
Query: 591 RLDRPG-------------------------------------DVDAVIKRANSTEYGLA 613
RL G D + I AN TEYGL
Sbjct: 354 RLTLGGLDKGYFYEPTLIKGGNNDMRIFQEEIFGPVLAVITFKDEEEAIAIANDTEYGLG 413
Query: 614 SGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKD 661
G++T DIN+A+ I +G V++N Y++ APFGG+K+SG G++
Sbjct: 414 GGVWTRDINRALRVARGIQTGRVWVNCYHQYPAHAPFGGYKKSGIGRE 461
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 354 bits (910), Expect = e-115
Identities = 156/438 (35%), Positives = 226/438 (51%), Gaps = 61/438 (13%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
INPA S +A+ +D A AA+ AF G WS +R + +AD +E N EE
Sbjct: 2 INPATGEVFASAPVASEAQLDQAVAAAKAAFPG-WSATPLEERRAALLAIADAIEANAEE 60
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNF-TFTKR 389
LA + +L+ G A + VG ++ +Y A +P + +R
Sbjct: 61 LARLLTLEQGKPLAEA-QFEVGGAVAWLRYTAS-------LDLPDEVIEDDDTRRVELRR 112
Query: 390 EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKG 449
+P+GV I PWN+PL++ +WK+AP L AGNTVV+KPS +PL LKL EL + P G
Sbjct: 113 KPLGVVAAIVPWNFPLLLAAWKIAPALLAGNTVVLKPSPFTPLCTLKLGEL-AQEVLPPG 171
Query: 450 VINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLV 509
V+N++ G + G A++ H IRK+ FTGST TG K+M SAA+ LK+V+LELGG +
Sbjct: 172 VLNVVSGGDEL-GPALTSHPDIRKISFTGSTATGKKVMASAAK-TLKRVTLELGGNDAAI 229
Query: 510 IFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM------- 562
+ D ++D G F N G+ C + R++V +IYD F E +V K
Sbjct: 230 VLPDVDIDAVAPKLFWGAFINSGQVCAAIKRLYVHESIYDEFCEALVALAKAAVVGDGLD 289
Query: 563 --------NHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG------------------ 596
+K DK+ + E AK++GA++L GG+ LD PG
Sbjct: 290 PGTTLGPVQNKMQYDKVKELVEDAKAKGAKVLAGGEPLDGPGYFIPPTIVDDPPEGSRIV 349
Query: 597 ---------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTY 641
D D VI RAN +EYGL + +++SD+ +A ++++GTV+INT+
Sbjct: 350 DEEQFGPVLPVLKYSDEDEVIARANDSEYGLGASVWSSDLERAEAVARRLEAGTVWINTH 409
Query: 642 NKTDVAAPFGGFKQSGFG 659
D APFGG KQSG G
Sbjct: 410 GALDPDAPFGGHKQSGIG 427
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 351 bits (903), Expect = e-114
Identities = 163/443 (36%), Positives = 250/443 (56%), Gaps = 55/443 (12%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
INPA E+TI + A ++DVD A AA +AF W + + +R + +A+ + + +EE
Sbjct: 2 INPATEATIGEIPAATAEDVDAAVRAARRAFPR-WKKTTGAERAKYLRAIAEGVRERREE 60
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFT-FTKR 389
LA +E+ D+G A V ++Y+A ++ L + A P+ +F +R
Sbjct: 61 LAELEARDNGKPLDEAA-WDVDDVAGCFEYYADLAEQ-LDAKAERAVPLPSEDFKARVRR 118
Query: 390 EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKG 449
EP+GV GLITPWN+PL+M +WK+AP LAAG TVV+KPSE++ LT L+LAE++ AG P G
Sbjct: 119 EPVGVVGLITPWNFPLLMAAWKVAPALAAGCTVVLKPSELTSLTELELAEIAAEAGLPPG 178
Query: 450 VINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLV 509
V+N++ GTG G ++ H I K+ FTGST TG ++M++AA+ ++K VSLELGGKSP++
Sbjct: 179 VLNVVTGTGDEAGAPLAAHPGIDKISFTGSTATGSQVMQAAAQ-DIKPVSLELGGKSPII 237
Query: 510 IFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKMN------ 563
+FDD +L+KAV +M G F+N G+ C + R+ V +I DAFLE++ T + +
Sbjct: 238 VFDDADLEKAVEWAMFGCFWNNGQICSATSRLLVHESIADAFLERLATAAEAIRVGDPLE 297
Query: 564 ---------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG-----------DV----- 598
+A +K++ + + K EGARLL GG+R DV
Sbjct: 298 EGVRLGPLVSQAQYEKVLSFIARGKEEGARLLCGGRRPAHLEKGYFIAPTVFADVPTDSR 357
Query: 599 -------------------DAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFIN 639
D I AN +EYGLA+ + + D + + +++G V+IN
Sbjct: 358 IWREEIFGPVLCVRSFATEDEAIALANDSEYGLAAAVISRDAERCDRVAEALEAGIVWIN 417
Query: 640 TYNKTDVAAPFGGFKQSGFGKDL 662
AP+GG+K+SG G++L
Sbjct: 418 CSQPCFPQAPWGGYKRSGIGREL 440
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 344 bits (884), Expect = e-111
Identities = 166/462 (35%), Positives = 250/462 (54%), Gaps = 64/462 (13%)
Query: 254 FINGEFVNSVGGSSMECINPANESTICSVQMANS-DDVDIAALAAEKAFEGEWSRLSARD 312
+I GE+V+S G + + NPA+ + ++ DVD A AA +AF EW ++ A
Sbjct: 2 YIGGEWVDSASGETFDSRNPADLEEVVGTFPLSTASDVDAAVEAAREAF-PEWRKVPAPR 60
Query: 313 RGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGST 372
R +F+ A+L+++ KEELA + + + G + V +ID +Y AG ++ G T
Sbjct: 61 RAEYLFRAAELLKKRKEELARLVTREMGKPLAEG-RGDVQEAIDMAQYAAGEGRRLFGET 119
Query: 373 IPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPL 432
+P PN T+R+PIGV LITPWN+P+ + SWK+ P L GNTVV KP+E +P
Sbjct: 120 VP--SELPN-KDAMTRRQPIGVVALITPWNFPVAIPSWKIFPALVCGNTVVFKPAEDTPA 176
Query: 433 TALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAE 492
ALKL EL AG P GV+N++ G G GEA+ +H + V FTGST G +I ++ A
Sbjct: 177 CALKLVELFAEAGLPPGVVNVVHGRGEEVGEALVEHPDVDVVSFTGSTEVGERIGETCAR 236
Query: 493 SNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFL 552
N K+V+LE+GGK+P+++ DD +LD A+ ++ F G+ C + R+ V ++YD FL
Sbjct: 237 PN-KRVALEMGGKNPIIVMDDADLDLALEGALWSAFGTTGQRCTATSRLIVHESVYDEFL 295
Query: 553 EKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDR--- 594
++ V K++ ++A L+K+++Y E K EGA LL+GG+RL
Sbjct: 296 KRFVERAKRLRVGDGLDEETDMGPLINEAQLEKVLNYNEIGKEEGATLLLGGERLTGGGY 355
Query: 595 -------P------------------GDVDAVIKR---------ANSTEYGLASGIFTSD 620
P G V A+I+ AN TEYGL+S I+T D
Sbjct: 356 EKGYFVEPTVFTDVTPDMRIAQEEIFGPVVALIEVSSLEEAIEIANDTEYGLSSAIYTED 415
Query: 621 INKAMYFVDKIDSGTVFINTYNKT---DVAAPFGGFKQSGFG 659
+NKA +++G ++N T +V PFGG K+SG G
Sbjct: 416 VNKAFRARRDLEAGITYVN--APTIGAEVHLPFGGVKKSGNG 455
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 341 bits (876), Expect = e-109
Identities = 170/479 (35%), Positives = 250/479 (52%), Gaps = 69/479 (14%)
Query: 245 MDVSFPN-QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE- 302
M + P QLFI GE+ V G + +NPA E TI + A ++DVD A AA KAF+
Sbjct: 1 MAIPVPRRQLFIGGEWREPVLGKRIPVVNPATEETIGDIPAATAEDVDAAVEAARKAFKR 60
Query: 303 ---GEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDT-- 357
+W+R + R + +A + + K ELA +E+LD G A +D
Sbjct: 61 NKGKDWARTTGAVRAKYLRAIAAKITERKSELAKLETLDCGKPLDEAA-----WDMDDVA 115
Query: 358 --WKYFAGWCDKILG-STIPIAHARPNSNF-TFTKREPIGVCGLITPWNYPLMMLSWKMA 413
++Y+A + + P++ P F + +EP+GV GLITPWNYPL+M +WK+A
Sbjct: 116 GCFEYYADLAEALDAKQKAPVS--LPMETFKGYVLKEPLGVVGLITPWNYPLLMATWKVA 173
Query: 414 PCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRK 473
P LAAG T V+KPSE++ +T L+LA++ G P GV+N++ G G G ++ H + K
Sbjct: 174 PALAAGCTAVLKPSELASVTCLELADICREVGLPPGVLNVVTGLGTEAGAPLASHPGVDK 233
Query: 474 VGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGE 533
+ FTGST TG KIM +AA+ +K VSLELGGKSP+++FDD +LDKAV +M G F+ G+
Sbjct: 234 IAFTGSTATGRKIMTAAAQ-MVKPVSLELGGKSPIIVFDDVDLDKAVEWAMFGCFWTNGQ 292
Query: 534 NCISAGRIFVDSNIYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKA 578
C + R+ V I FLEK+V K + + +K++ + A
Sbjct: 293 ICSATSRLLVHERIASEFLEKLVKWAKNIKISDPLEEGCRLGPVVSEGQYEKVLKFISTA 352
Query: 579 KSEGARLLIGGKRLD-----------RPGDV------------------------DAVIK 603
KSEGA +L GGKR + DV D I+
Sbjct: 353 KSEGATILCGGKRPEHLKKGFFIEPTIITDVTTSMQIWREEVFGPVLCVKTFSTEDEAIE 412
Query: 604 RANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
AN + YGLA + ++D+ + + +G V+IN AP+GG K+SGFG++L
Sbjct: 413 LANDSHYGLAGAVISNDLERCERVSEAFQAGIVWINCSQPCFCQAPWGGIKRSGFGREL 471
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and other
similar sequences are present in this CD.
Length = 475
Score = 337 bits (866), Expect = e-108
Identities = 173/463 (37%), Positives = 259/463 (55%), Gaps = 61/463 (13%)
Query: 252 QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
LFINGE+V G +++ NPAN T+ + A DVD A AA++AF+ W + +
Sbjct: 2 GLFINGEWVKGSSGETIDSYNPANGETLSEITDATDADVDRAVKAAQEAFK-TWRKTTVA 60
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
+R +++ K+AD++++NKE LA +E+LD+G + ++ D ++YFAG GS
Sbjct: 61 ERANILNKIADIIDENKELLAMVETLDNGKPIRETRAVDIPLAADHFRYFAGVIRAEEGS 120
Query: 372 TIPIAHARPNSNF-TFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVS 430
I + + + REPIGV G I PWN+P +M +WK+AP LAAGNTVV+KPS +
Sbjct: 121 ANMI-----DEDTLSIVLREPIGVVGQIIPWNFPFLMAAWKLAPALAAGNTVVIKPSSTT 175
Query: 431 PLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSA 490
L+ L+LA++ ++ PKGV+NI+ G G+ +GE + H + K+ FTGST G + +A
Sbjct: 176 SLSLLELAKI-IQDVLPKGVVNIVTGKGSKSGEYLLNHPGLDKLAFTGSTEVGRDVAIAA 234
Query: 491 AESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDA 550
A+ L +LELGGKS +IFDD N DKA+ + G+ FN+G+ C + RIFV IYD
Sbjct: 235 AK-KLIPATLELGGKSANIIFDDANWDKALEGAQLGILFNQGQVCCAGSRIFVQEGIYDE 293
Query: 551 FLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRP 595
F+ K+ + + + +K LDK++ Y + AK EGA++L GG RL
Sbjct: 294 FVAKLKEKFENVKVGNPLDPDTQMGAQVNKDQLDKILSYVDIAKEEGAKILTGGHRLTEN 353
Query: 596 G-------------------------------------DVDAVIKRANSTEYGLASGIFT 618
G D VI AN +EYGL G+FT
Sbjct: 354 GLDKGFFIEPTLIVNVTNDMRVAQEEIFGPVATVIKFKTEDEVIDMANDSEYGLGGGVFT 413
Query: 619 SDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKD 661
DIN+A+ +++G V++NTYN+ APFGG+K+SG G++
Sbjct: 414 KDINRALRVARAVETGRVWVNTYNQIPAGAPFGGYKKSGIGRE 456
>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to
Tortula ruralis aldehyde dehydrogenase ALDH21A1.
Uncharacterized aldehyde dehydrogenase (ORF name y4uC)
with sequence similarity to the moss Tortula ruralis
aldehyde dehydrogenase ALDH21A1 (RNP123) believed to
play an important role in the detoxification of
aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 453
Score = 334 bits (859), Expect = e-108
Identities = 158/442 (35%), Positives = 239/442 (54%), Gaps = 56/442 (12%)
Query: 268 MECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQN 327
+E I+P + I V +A+ +DV+ A AA++ + E L A +R ++ + A L+E+
Sbjct: 1 IEVISPYDGEVIGRVPVASEEDVEKAIAAAKEGAK-EMKSLPAYERAEILERAAQLLEER 59
Query: 328 KEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPI-AHARPNSNFTF 386
+EE A +L++G A K V +I+T + A ++ G TIP A F
Sbjct: 60 REEFARTIALEAGKPIKDARK-EVDRAIETLRLSAEEAKRLAGETIPFDASPGGEGRIGF 118
Query: 387 TKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGF 446
T REPIGV ITP+N+PL +++ K+ P +AAGN VV+KP+ +PL+ALKLAEL + AG
Sbjct: 119 TIREPIGVVAAITPFNFPLNLVAHKVGPAIAAGNAVVLKPASQTPLSALKLAELLLEAGL 178
Query: 447 PKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKS 506
PKG +N++ G+G G+A+ ++R + FTGS G I + A LKKV+LELG +
Sbjct: 179 PKGALNVVTGSGETVGDALVTDPRVRMISFTGSPAVGEAIARKAG---LKKVTLELGSNA 235
Query: 507 PLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKK----- 561
+++ D +L+KAV + G F N G+ CIS RIFV +IYD FLE+ V KK
Sbjct: 236 AVIVDADADLEKAVERCVSGAFANAGQVCISVQRIFVHEDIYDEFLERFVAATKKLVVGD 295
Query: 562 ----------MNHKAHLDKLIDYCEKAKSEGARLLIGGKR-------------------- 591
M +A +++ ++ E+A GARLL GGKR
Sbjct: 296 PLDEDTDVGPMISEAEAERIEEWVEEAVEGGARLLTGGKRDGAILEPTVLTDVPPDMKVV 355
Query: 592 ----------LDRPGDVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFIN-- 639
L+ +D I AN + YGL +G+FT+D+ KA+ +++ G V IN
Sbjct: 356 CEEVFAPVVSLNPFDTLDEAIAMANDSPYGLQAGVFTNDLQKALKAARELEVGGVMINDS 415
Query: 640 -TYNKTDVAAPFGGFKQSGFGK 660
T+ + D P+GG K+SG G+
Sbjct: 416 STF-RVD-HMPYGGVKESGTGR 435
>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde
dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde
dehydrogenase of Magnetospirillum gryphiswaldense MSR-1
(MGR_2402) , and other similar sequences, are present in
this CD.
Length = 457
Score = 333 bits (856), Expect = e-107
Identities = 163/449 (36%), Positives = 237/449 (52%), Gaps = 69/449 (15%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
INPA I V + + DVD A AA+ AF EW+ AR+RG L+ ++AD +E EE
Sbjct: 2 INPATGQVIGEVPRSRAADVDRAVAAAKAAF-PEWAATPARERGKLLARIADALEARSEE 60
Query: 331 LATIESLDSGAVYTLALKTH----VGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTF 386
LA + +L++G AL+T + D ++YF G ++ G T+P P+ T+
Sbjct: 61 LARLLALETGN----ALRTQARPEAAVLADLFRYFGGLAGELKGETLP---FGPDV-LTY 112
Query: 387 TKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGF 446
T REP+GV G I PWN PLM+ + K+AP L AGNTVV+K +E +PL L LAE+ +
Sbjct: 113 TVREPLGVVGAILPWNAPLMLAALKIAPALVAGNTVVLKAAEDAPLAVLLLAEILAQV-L 171
Query: 447 PKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKS 506
P GV+N++ G G G A+ H + KV FTGST G I ++AA+ L VSLELGGKS
Sbjct: 172 PAGVLNVITGYGEECGAALVDHPDVDKVTFTGSTEVGKIIYRAAAD-RLIPVSLELGGKS 230
Query: 507 PLVIFDDYNLDKAVRMSMGGVFFNK-GENCISAGRIFVDSNIYDAFLEKVVTEVKKMN-- 563
P+++F D +LD AV ++ G+ F + G++C + R+FV +IYDAFLEK+V ++ K+
Sbjct: 231 PMIVFPDADLDDAVDGAIAGMRFTRQGQSCTAGSRLFVHEDIYDAFLEKLVAKLSKLKIG 290
Query: 564 -------------HKAHLDKLIDYCEKAKSE-GARLLIGGK------------------- 590
+ K+ Y + S GA +L GG
Sbjct: 291 DPLDEATDIGAIISEKQFAKVCGYIDLGLSTSGATVLRGGPLPGEGPLADGFFVQPTIFS 350
Query: 591 ------RLDRP------------GDVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKID 632
RL R D D VI AN + YGLA+ ++T D+ +A+ ++
Sbjct: 351 GVDNEWRLAREEIFGPVLCAIPWKDEDEVIAMANDSHYGLAAYVWTRDLGRALRAAHALE 410
Query: 633 SGTVFINTYNKTDVAAPFGGFKQSGFGKD 661
+G V +N +GGFKQSG G++
Sbjct: 411 AGWVQVNQGGGQQPGQSYGGFKQSGLGRE 439
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 333 bits (855), Expect = e-107
Identities = 160/472 (33%), Positives = 260/472 (55%), Gaps = 58/472 (12%)
Query: 251 NQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE-GEWSRLS 309
N+LFINGE+ + + E ++P ++ + + S D+D A AA FE G+WS S
Sbjct: 20 NRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDIDRAVSAARGVFERGDWSLSS 79
Query: 310 ARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKIL 369
R ++ KLADLME + EELA +E+LD+G +L+ + + +++A DK+
Sbjct: 80 PAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVY 139
Query: 370 GSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEV 429
G + + REP+GV I PWN+PL++ WK+ P LAAGN+V++KPSE
Sbjct: 140 GEVATTS----SHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEK 195
Query: 430 SPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKS 489
SPL+A++LA L+ AG P GV+N++ G G G+A+S+H I + FTGST TG +++K
Sbjct: 196 SPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKD 255
Query: 490 AAESNLKKVSLELGGKSPLVIFDDY-NLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
A +SN+K+V LE GGKS ++F D +L +A + G+F+N+G+ CI+ R+ ++ +I
Sbjct: 256 AGDSNMKRVWLEAGGKSANIVFADCPDLQQAASATAAGIFYNQGQVCIAGTRLLLEESIA 315
Query: 549 DAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD 593
D FL + + + AH D + + + +S+G +LL+ G+
Sbjct: 316 DEFLALLKQQAQNWQPGHPLDPATTMGTLIDCAHADSVHSFIREGESKG-QLLLDGRNAG 374
Query: 594 RPG--------DVDA--------------VIKR----------ANSTEYGLASGIFTSDI 621
DVD V+ R AN ++YGL + ++T D+
Sbjct: 375 LAAAIGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEEQALQLANDSQYGLGAAVWTRDL 434
Query: 622 NKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDLDINKAMYFVDK 673
++A ++ +G+VF+N YN D+ PFGG+KQSG G+D K+++ ++K
Sbjct: 435 SRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRD----KSLHALEK 482
>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde
dehydrogenase, PhdK-like. Nocardioides sp. strain
KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme
involved in phenanthrene degradation, and other similar
sequences, are present in this CD.
Length = 456
Score = 330 bits (847), Expect = e-106
Identities = 158/456 (34%), Positives = 241/456 (52%), Gaps = 61/456 (13%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
INPA + V A++ DVD A AA AF EW + +R ++ +LA + ++ EE
Sbjct: 2 INPATGQVLARVPAASAADVDRAVAAARAAFP-EWRATTPLERARMLRELATRLREHAEE 60
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKRE 390
LA I++LD G + A+ V ++ YFAG ++ G TIP+ N +T RE
Sbjct: 61 LALIDALDCGNPVS-AMLGDVMVAAALLDYFAGLVTELKGETIPVGGR----NLHYTLRE 115
Query: 391 PIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGV 450
P GV I +N+PLM + K+A LAAGNTVV+KP E +PL+AL+LAEL R P GV
Sbjct: 116 PYGVVARIVAFNHPLMFAAAKIAAPLAAGNTVVVKPPEQAPLSALRLAEL-AREVLPPGV 174
Query: 451 INILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVI 510
NILPG GA G A+ +H ++++ GS TG IM++AAE +K V+LELGGK+ L++
Sbjct: 175 FNILPGDGATAGAALVRHPDVKRIALIGSVPTGRAIMRAAAEG-IKHVTLELGGKNALIV 233
Query: 511 FDDYNLDKAVRMSMGGVFFN-KGENCISAGRIFVDSNIYDAFLEKVVTEVKK-------- 561
F D + + A ++ G+ F G++C S R+FV +IYD L +VV V
Sbjct: 234 FPDADPEAAADAAVAGMNFTWCGQSCGSTSRLFVHESIYDEVLARVVERVAAIKVGDPTD 293
Query: 562 -------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG------------------ 596
+ + D+++ Y + AK EGARL+ GG R + P
Sbjct: 294 PATTMGPLVSRQQYDRVMHYIDSAKREGARLVTGGGRPEGPALEGGFYVEPTVFADVTPG 353
Query: 597 -------------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVF 637
D ++ +AN EYGL + I+T+DI++A ++++G V+
Sbjct: 354 MRIAREEIFGPVLSVLRWRDEAEMVAQANGVEYGLTAAIWTNDISQAHRTARRVEAGYVW 413
Query: 638 INTYNKTDVAAPFGGFKQSGFGKDLDINKAMYFVDK 673
IN ++ + APFGG K SG G++ + + + + +
Sbjct: 414 INGSSRHFLGAPFGGVKNSGIGREECLEELLSYTQE 449
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present in
this CD. The active site cysteine and glutamate residues
are not conserved in the human ALDH16A1 protein
sequence.
Length = 480
Score = 330 bits (847), Expect = e-105
Identities = 151/457 (33%), Positives = 235/457 (51%), Gaps = 65/457 (14%)
Query: 253 LFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARD 312
FING++V S INPA + SV A +DVD A AA AFE WS L
Sbjct: 24 HFINGKWVKPENRKSFPTINPATGEVLASVLQAEEEDVDAAVAAARTAFES-WSALPGHV 82
Query: 313 RGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGST 372
R ++++A +++++ A +ESLD+G + + + + + AGW
Sbjct: 83 RARHLYRIARHIQKHQRLFAVLESLDNGKPIRESRDCDIPLVARHFYHHAGWAQL----- 137
Query: 373 IPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPL 432
+ +P+GV G I PWN+PL+ML+WK+ P LA GNTVV+KP+E +PL
Sbjct: 138 ---------LDTELAGWKPVGVVGQIVPWNFPLLMLAWKICPALAMGNTVVLKPAEYTPL 188
Query: 433 TALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAE 492
TAL AE+ AG P GV+NI+ G G+ G A++ H + KV FTGST G + ++ A
Sbjct: 189 TALLFAEICAEAGLPPGVLNIVTGNGS-FGSALANHPGVDKVAFTGSTEVGRALRRATAG 247
Query: 493 SNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFL 552
+ KK+SLELGGKSP ++FDD +LD AV + ++FN+G+ C + R+ V ++ + +
Sbjct: 248 TG-KKLSLELGGKSPFIVFDDADLDSAVEGIVDAIWFNQGQVCCAGSRLLVQESVAEELI 306
Query: 553 EKVVTEVKKMNHKAHLDKLID---------------YCEKAKSEGARL------------ 585
K+ + + LDK ID E+ ++EGA +
Sbjct: 307 RKLKERMSHLRVGDPLDKAIDMGAIVDPAQLKRIRELVEEGRAEGADVFQPGADLPSKGP 366
Query: 586 -----LIGG----KRLDR---PGDVDAV---------IKRANSTEYGLASGIFTSDINKA 624
L R+ + G V V + AN+T YGLA+ +++ +++ A
Sbjct: 367 FYPPTLFTNVPPASRIAQEEIFGPVLVVLTFRTAKEAVALANNTPYGLAASVWSENLSLA 426
Query: 625 MYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKD 661
+ + +G V+IN +N D AA FGG+++SGFG++
Sbjct: 427 LEVALSLKAGVVWINGHNLFDAAAGFGGYRESGFGRE 463
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 322 bits (828), Expect = e-102
Identities = 160/462 (34%), Positives = 241/462 (52%), Gaps = 56/462 (12%)
Query: 249 FPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRL 308
Q I G++ ++ G + NPA I +V + + A +A AF WS+L
Sbjct: 23 LRTQGLIGGKWTDAYDGKTFPVYNPATGEVIANVPCMGRAETNDAIASAHDAFP-SWSKL 81
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
+A +R ++ + DL+ NKE+LA + +L+ G A+ V +YFA ++
Sbjct: 82 TASERSKILRRWYDLIIANKEDLAQLMTLEQGKPLKEAI-GEVAYGASFLEYFAEEAKRV 140
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
G IP ++P+GV G ITPWN+PL M++ K+ P LAAG TVV+KPSE
Sbjct: 141 YGDIIPSPFPDRR---LLVLKQPVGVVGAITPWNFPLAMITRKVGPALAAGCTVVVKPSE 197
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMK 488
++PLTAL AEL+++AG P GV+N++ G G+A+ K+RK+ FTGST G K+M
Sbjct: 198 LTPLTALAAAELALQAGIPPGVLNVVMGDAPEIGDALLASPKVRKITFTGSTAVGKKLMA 257
Query: 489 SAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
AA + +K+VSLELGG +P ++FDD +LD AV+ ++ F N G+ C+ A RI V IY
Sbjct: 258 GAAAT-VKRVSLELGGNAPFIVFDDADLDVAVKGALASKFRNSGQTCVCANRILVQEGIY 316
Query: 549 DAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD 593
D F E V+K+ ++A + K+ + + A S+GA++L+GGKR
Sbjct: 317 DKFAEAFSKAVQKLVVGDGFEEGVTQGPLINEAAVQKVESHVQDAVSKGAKVLLGGKRHS 376
Query: 594 RPG----------------------------------DVDAVIKRANSTEYGLASGIFTS 619
G + +A I AN TE GLA+ IFT
Sbjct: 377 LGGTFYEPTVLGDVTEDMLIFREEVFGPVAPLTRFKTEEEA-IAIANDTEAGLAAYIFTR 435
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKD 661
D+ +A + ++ G V +N + APFGG KQSG G++
Sbjct: 436 DLQRAWRVSEALEYGIVGVNEGLISTEVAPFGGVKQSGLGRE 477
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305 and also, the Mycobacterium
tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence;
and other similar sequences, are included in this CD.
Length = 459
Score = 321 bits (824), Expect = e-102
Identities = 147/446 (32%), Positives = 216/446 (48%), Gaps = 54/446 (12%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAF-EGEWSRLSARDRGHLMFKLADLMEQNKE 329
INPA E I + A + DVD A AA +AF G+WS A +R + +L + +E KE
Sbjct: 2 INPATEEVIGTAPDAGAADVDAAIAAARRAFDTGDWST-DAEERARCLRQLHEALEARKE 60
Query: 330 ELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS-TIPIAHARPNSNFTFTK 388
EL + + GA A V I +YFA D +P+ R +
Sbjct: 61 ELRALLVAEVGAPVMTARAMQVDGPIGHLRYFADLADSFPWEFDLPVPALRGGPGRRVVR 120
Query: 389 REPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPK 448
REP+GV ITPWN+P + K+AP LAAGNTVV+KP+ +PL+AL L E+ P
Sbjct: 121 REPVGVVAAITPWNFPFFLNLAKLAPALAAGNTVVLKPAPDTPLSALLLGEIIAETDLPA 180
Query: 449 GVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPL 508
GV+N++ G+ GEA++ ++ V FTGST G +IM AA LK+V LELGGKS
Sbjct: 181 GVVNVVTGSDNAVGEALTTDPRVDMVSFTGSTAVGRRIMAQAAA-TLKRVLLELGGKSAN 239
Query: 509 VIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKMNH---- 564
++ DD +L A ++G N G+ C R+ V + YD +E + + +
Sbjct: 240 IVLDDADLAAAAPAAVGVCMHNAGQGCALTTRLLVPRSRYDEVVEALAAAFEALPVGDPA 299
Query: 565 -----------KAHLDKLIDYCEKAKSEGARLLIGGKRLDR--PG--------------- 596
A D++ Y + + EGARL+ GG R G
Sbjct: 300 DPGTVMGPLISAAQRDRVEGYIARGRDEGARLVTGGGRPAGLDKGFYVEPTLFADVDNDM 359
Query: 597 ------------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFI 638
D D ++ AN ++YGL+ G++++D+++A +I +G+V I
Sbjct: 360 RIAQEEIFGPVLVVIPYDDDDEAVRIANDSDYGLSGGVWSADVDRAYRVARRIRTGSVGI 419
Query: 639 NTYNKTDVAAPFGGFKQSGFGKDLDI 664
N APFGG+KQSG G++ I
Sbjct: 420 NGGGGYGPDAPFGGYKQSGLGRENGI 445
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
involved the biosynthesis of coenzyme F(420) in
Methanocaldococcus jannaschii through the oxidation of
lactaldehyde to lactate and generation of NAPH, and
similar sequences are included in this CD.
Length = 456
Score = 321 bits (824), Expect = e-102
Identities = 153/443 (34%), Positives = 240/443 (54%), Gaps = 53/443 (11%)
Query: 268 MECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQN 327
+E NPAN I +V + ++V A AEKA + S L A R ++ K+A+L+E+
Sbjct: 1 IEVRNPANGEVIDTVPSLSREEVREAIEVAEKAKD-VMSNLPAYKRYKILMKVAELIERR 59
Query: 328 KEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSN-FTF 386
KEELA + +++ G + + V +I +K A + G TIP+ N F
Sbjct: 60 KEELAKLLTIEVGKPIKQS-RVEVERTIRLFKLAAEEAKVLRGETIPVDAYEYNERRIAF 118
Query: 387 TKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGF 446
T REPIGV G ITP+N+P + + K+AP +A GN+VV+KPS +PLTA++LA++ AG
Sbjct: 119 TVREPIGVVGAITPFNFPANLFAHKIAPAIAVGNSVVVKPSSNTPLTAIELAKILEEAGL 178
Query: 447 PKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKS 506
P GVIN++ G G+ G+ I + K+ + FTGST G+ I A KKV+LELGG
Sbjct: 179 PPGVINVVTGYGSEVGDEIVTNPKVNMISFTGSTAVGLLIASKAG-GTGKKVALELGGSD 237
Query: 507 PLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKMN--- 563
P+++ D +L++AV +++ G F N G+ C + RI V+ +YD FL+ +V +VKK+
Sbjct: 238 PMIVLKDADLERAVSIAVRGRFENAGQVCNAVKRILVEEEVYDKFLKLLVEKVKKLKVGD 297
Query: 564 ------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD------------------ 593
++++ + A +G ++L GGKR +
Sbjct: 298 PLDESTDLGPLISPEAVERMENLVNDAVEKGGKILYGGKRDEGSFFPPTVLENDTPDMIV 357
Query: 594 -------------RPGDVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFIN- 639
+ D + ++ ANSTEYGL + +FT+DIN+A+ ++++G V IN
Sbjct: 358 MKEEVFGPVLPIAKVKDDEEAVEIANSTEYGLQASVFTNDINRALKVARELEAGGVVIND 417
Query: 640 -TYNKTDVAAPFGGFKQSGFGKD 661
T + D PFGGFK+SG G++
Sbjct: 418 STRFRWD-NLPFGGFKKSGIGRE 439
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 307 bits (789), Expect = 1e-97
Identities = 144/423 (34%), Positives = 230/423 (54%), Gaps = 61/423 (14%)
Query: 289 DVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLA-L 347
DVD A AA A + W+ ++R ++ K A+++E+ ++E+A +SG+ A
Sbjct: 1 DVDRAYAAAAAAQK-AWAATPPQERAAILRKAAEILEERRDEIADWLIRESGSTRPKAAF 59
Query: 348 KTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMM 407
+ ++I + AG + G +P + +R P+GV G+I+P+N+PL+
Sbjct: 60 EVGAAIAI--LREAAGLPRRPEGEILPSDVP---GKESMVRRVPLGVVGVISPFNFPLI- 113
Query: 408 LSWK-MAPCLAAGNTVVMKPSEVSPLT-ALKLAELSVRAGFPKGVINILPGTGAVTGEAI 465
L+ + +AP LA GN VV+KP +P+T L +AE+ AG PKGV+N++PG G+ G+A+
Sbjct: 114 LAMRSVAPALALGNAVVLKPDSRTPVTGGLLIAEIFEEAGLPKGVLNVVPGGGSEIGDAL 173
Query: 466 SQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMG 525
+H ++R + FTGST G I + A +LKKV+LELGG +PL++ DD +LD AV +
Sbjct: 174 VEHPRVRMISFTGSTAVGRHIGELAGR-HLKKVALELGGNNPLIVLDDADLDLAVSAAAF 232
Query: 526 GVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM----------------NHKAHLD 569
G F ++G+ C++AGRI V ++YD F+EK+V + K + N + +D
Sbjct: 233 GAFLHQGQICMAAGRILVHESVYDEFVEKLVAKAKALPVGDPRDPDTVIGPLINERQ-VD 291
Query: 570 KLIDYCEKAKSEGARLLIGGKRLD---RP---GDVDA----------------------- 600
++ E A + GARLL GG +P DV
Sbjct: 292 RVHAIVEDAVAAGARLLTGGTYEGLFYQPTVLSDVTPDMPIFREEIFGPVAPVIPFDDDE 351
Query: 601 -VIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFIN--TYNKTDVAAPFGGFKQSG 657
++ AN TEYGL++ +FT D+ +AM F +++++G V IN T N + PFGG K SG
Sbjct: 352 EAVELANDTEYGLSAAVFTRDLERAMAFAERLETGMVHINDQTVND-EPHVPFGGVKASG 410
Query: 658 FGK 660
G+
Sbjct: 411 GGR 413
>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent
acetaldehyde dehydrogenase II-like. Included in this CD
is the NAD+-dependent, acetaldehyde dehydrogenase II
(AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes)
eutrophus H16 involved in the catabolism of acetoin and
ethanol, and similar proteins, such as, the dimeric
dihydrolipoamide dehydrogenase of the acetoin
dehydrogenase enzyme system of Klebsiella pneumonia.
Also included are sequences similar to the
NAD+-dependent chloroacetaldehyde dehydrogenases (AldA
and AldB) of Xanthobacter autotrophicus GJ10 which are
involved in the degradation of 1,2-dichloroethane. These
proteins apparently require RpoN factors for expression.
Length = 479
Score = 306 bits (786), Expect = 1e-96
Identities = 163/467 (34%), Positives = 235/467 (50%), Gaps = 69/467 (14%)
Query: 254 FINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDR 313
FI GE+V V G + I P C V + ++D+++A AA A E W + S +R
Sbjct: 4 FIGGEWVAPVKGEYFDNITPVTGKVFCEVPRSTAEDIELALDAAHAAKEA-WGKTSVAER 62
Query: 314 GHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTI 373
+++ K+AD ME N E LA E+ D+G L + ++ID ++YFAG GS
Sbjct: 63 ANILNKIADRMEANLEMLAVAETWDNGKPVRETLAADIPLAIDHFRYFAGCIRAQEGSIS 122
Query: 374 PIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLT 433
I + + EP+GV G I PWN+PL+M +WK+AP LAAGN VV+KP+E +P +
Sbjct: 123 EI----DENTVAYHFHEPLGVVGQIIPWNFPLLMATWKLAPALAAGNCVVLKPAEQTPAS 178
Query: 434 ALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAES 493
L L EL + P GV+N++ G G G+ ++ +I KV FTG T TG IM+ A+E
Sbjct: 179 ILVLMEL-IGDLLPPGVVNVVNGFGLEAGKPLASSKRIAKVAFTGETTTGRLIMQYASE- 236
Query: 494 NLKKVSLELGGKSPLVIF------DDYNLDKAVRMSMGGVFF--NKGENCISAGRIFVDS 545
N+ V+LELGGKSP + F DD DKA+ G V F N+GE C R +
Sbjct: 237 NIIPVTLELGGKSPNIFFADVMDADDAFFDKALE---GFVMFALNQGEVCTCPSRALIQE 293
Query: 546 NIYDAFLEKVVTEVK--KMNH-------------KAHLDKLIDYCEKAKSEGARLLIGGK 590
+IYD F+E+ + VK K + L+K++ Y + K EGA +L GG+
Sbjct: 294 SIYDRFMERALERVKAIKQGNPLDTETMIGAQASLEQLEKILSYIDIGKEEGAEVLTGGE 353
Query: 591 RLDRPG------------------------------------DVDAVIKRANSTEYGLAS 614
R + G D + ++ AN T YGL +
Sbjct: 354 RNELGGLLGGGYYVPTTFKGGNKMRIFQEEIFGPVLAVTTFKDEEEALEIANDTLYGLGA 413
Query: 615 GIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKD 661
G++T D N A I +G V+ N Y+ A FGG+KQSG G++
Sbjct: 414 GVWTRDGNTAYRMGRGIQAGRVWTNCYHLYPAHAAFGGYKQSGIGRE 460
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences, such
as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 306 bits (787), Expect = 1e-96
Identities = 144/463 (31%), Positives = 224/463 (48%), Gaps = 65/463 (14%)
Query: 254 FINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDR 313
I GE+V S GG + NPAN I V A+ +DV+ A AA +AF EW ++ A R
Sbjct: 2 VIGGEWVGS-GGETFTSRNPANGEPIARVFPASPEDVEAAVAAAREAF-KEWRKVPAPRR 59
Query: 314 GHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTI 373
G ++ ++ + + + KE L + SL+ G + L V ID Y G + G TI
Sbjct: 60 GEIVRQIGEALRKKKEALGRLVSLEMGKILPEGL-GEVQEMIDICDYAVGLSRMLYGLTI 118
Query: 374 PIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLT 433
P RP + + P+GV G+IT +N+P+ + W A L GNTVV KPSE +PLT
Sbjct: 119 P--SERPG-HRLMEQWNPLGVVGVITAFNFPVAVPGWNAAIALVCGNTVVWKPSETTPLT 175
Query: 434 ALKLAELSVRA----GFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKS 489
A+ + ++ G P GV+N++ G G GE + ++ V FTGST G ++ ++
Sbjct: 176 AIAVTKILAEVLEKNGLPPGVVNLVTGGGDG-GELLVHDPRVPLVSFTGSTEVGRRVGET 234
Query: 490 AAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYD 549
A +V LELGG + +++ DD +LD AVR + G+ C + R+ V ++YD
Sbjct: 235 VARRF-GRVLLELGGNNAIIVMDDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESVYD 293
Query: 550 AFLEKVVTEVKK---------------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDR 594
FLE++V K+ + ++A ++K ++ E AKS+G +L GGKR+D
Sbjct: 294 EFLERLVKAYKQVRIGDPLDEGTLVGPLINQAAVEKYLNAIEIAKSQGGTVLTGGKRIDG 353
Query: 595 --PG---------------------------------DVDAVIKRANSTEYGLASGIFTS 619
PG ++ I N GL+S IFT
Sbjct: 354 GEPGNYVEPTIVTGVTDDARIVQEETFAPILYVIKFDSLEEAIAINNDVPQGLSSSIFTE 413
Query: 620 DINKAMYFVDK--IDSGTVFINT-YNKTDVAAPFGGFKQSGFG 659
D+ +A ++ D G V +N + ++ FGG K++G G
Sbjct: 414 DLREAFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKETGGG 456
>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin
dehydrogenase-like. Vanillin dehydrogenase (Vdh,
VaniDH) involved in the metabolism of ferulic acid and
other related sequences are included in this CD. The
E. coli vanillin dehydrogenase (LigV) preferred NAD+ to
NADP+ and exhibited a broad substrate preference,
including vanillin, benzaldehyde, protocatechualdehyde,
m-anisaldehyde, and p-hydroxybenzaldehyde.
Length = 451
Score = 303 bits (777), Expect = 1e-95
Identities = 156/440 (35%), Positives = 232/440 (52%), Gaps = 54/440 (12%)
Query: 268 MECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQN 327
+ +NPA+ S V + + D + A AA AF W+ + +R ++ K A++ME+
Sbjct: 1 FDDLNPADGSVYARVAVGSRQDAERAIAAAYDAFPA-WAATTPSERERILLKAAEIMERR 59
Query: 328 KEELATIESLDSGAVYTLAL-KTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTF 386
++L + + G+ Y A +T + + AG C ++ G T+P + +
Sbjct: 60 ADDLIDLLIDEGGSTYGKAWFETTFTPEL--LRAAAGECRRVRGETLP---SDSPGTVSM 114
Query: 387 TKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGF 446
+ R P+GV ITP+NYPL++ + K+A LAAGNTVV+KPSE +P+ LK+AE+ AG
Sbjct: 115 SVRRPLGVVAGITPFNYPLILATKKVAFALAAGNTVVLKPSEETPVIGLKIAEIMEEAGL 174
Query: 447 PKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKS 506
PKGV N++ G GA G+ + ++R V FTGST G +I A +LKK++LELGGK+
Sbjct: 175 PKGVFNVVTGGGAEVGDELVDDPRVRMVTFTGSTAVGREI-AEKAGRHLKKITLELGGKN 233
Query: 507 PLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKMNHKA 566
PL++ D +LD AVR + G F ++G+ C+SA RI V+ +YD F++K V K+
Sbjct: 234 PLIVLADADLDYAVRAAAFGAFMHQGQICMSASRIIVEEPVYDEFVKKFVARASKLKVGD 293
Query: 567 HLDK------LID---------YCEKAKSEGARLLIGGKRLDR---P---GDV--DAVIK 603
D LI E A ++GA+LL GGK P DV D I
Sbjct: 294 PRDPDTVIGPLISPRQVERIKRQVEDAVAKGAKLLTGGKYDGNFYQPTVLTDVTPDMRIF 353
Query: 604 R----------------------ANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTY 641
R AN TEYGL++ I T+D+ +A ++++SG V IN
Sbjct: 354 REETFGPVTSVIPAKDAEEALELANDTEYGLSAAILTNDLQRAFKLAERLESGMVHINDP 413
Query: 642 NKTDVA-APFGGFKQSGFGK 660
D A PFGG K SGFG+
Sbjct: 414 TILDEAHVPFGGVKASGFGR 433
>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase. Succinic
semialdehyde dehydrogenase is one of three enzymes
constituting 4-aminobutyrate (GABA) degradation in both
prokaryotes and eukaryotes, catalyzing the
(NAD(P)+)-dependent catabolism reaction of succinic
semialdehyde to succinate for metabolism by the citric
acid cycle. The EC number depends on the cofactor:
1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and
1.2.1.16 if both can be used. In Escherichia coli,
succinic semialdehyde dehydrogenase is located in an
unidirectionally transcribed gene cluster encoding
enzymes for GABA degradation and is suggested to be
cotranscribed with succinic semialdehyde transaminase
from a common promoter upstream of SSADH. Similar gene
arrangements can be found in characterized Ralstonia
eutropha and the genome analysis of Bacillus subtilis.
Prokaryotic succinic semialdehyde dehydrogenases
(1.2.1.16) share high sequence homology to characterized
succinic semialdehyde dehydrogenases from rat and human
(1.2.1.24), exhibiting conservation of proposed cofactor
binding residues, and putative active sites (G-237 &
G-242, C-293 & G-259 respectively of rat SSADH).
Eukaryotic SSADH enzymes exclusively utilize NAD+ as a
cofactor, exhibiting little to no NADP+ activity. While
a NADP+ preference has been detected in prokaryotes in
addition to both NADP+- and NAD+-dependencies as in
E.coli, Pseudomonas, and Klebsiella pneumoniae. The
function of this alternative SSADH currently is unknown,
but has been suggested to play a possible role in
4-hydroxyphenylacetic degradation. Just outside the
scope of this model, are several sequences belonging to
clades scoring between trusted and noise. These
sequences may be actual SSADH enzymes, but lack
sufficiently close characterized homologs to make a
definitive assignment at this time. SSADH enzyme belongs
to the aldehyde dehydrogenase family (pfam00171),
sharing a common evolutionary origin and enzymatic
mechanism with lactaldehyde dehydrogenase. Like in
lactaldehyde dehydrogenase and succinate semialdehyde
dehydrogenase, the mammalian catalytic glutamic acid and
cysteine residues are conserved in all the enzymes of
this family (PS00687, PS00070) [Central intermediary
metabolism, Other].
Length = 448
Score = 297 bits (762), Expect = 2e-93
Identities = 156/440 (35%), Positives = 239/440 (54%), Gaps = 57/440 (12%)
Query: 272 NPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEEL 331
NPA I SV D+ + A AA +AF+ W +A++R L+ K +LM +NK++L
Sbjct: 3 NPATGEIIGSVPDQGVDETEAAIRAAYEAFK-TWRATTAKERSSLLRKWYNLMMENKDDL 61
Query: 332 ATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREP 391
A + +L++G A K + + ++FA ++ G TIP + + ++P
Sbjct: 62 ARLITLENGKPLKEA-KGEILYAASFLEWFAEEAKRVYGDTIP---SPQSDKRLIVIKQP 117
Query: 392 IGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVI 451
+GVC ITPWN+P M++ K LAAG TVV+KP+E +PL+AL LA L+ +AG PKGV+
Sbjct: 118 VGVCAAITPWNFPAAMITRKAGAALAAGCTVVVKPAEQTPLSALALARLAEQAGIPKGVL 177
Query: 452 NILPGTGAVT-GEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVI 510
N++ G+ A G ++ +RK+ FTGST G +MK +A S +KKVS+ELGG +P ++
Sbjct: 178 NVITGSRAKEVGNVLTTSPLVRKISFTGSTNVGKILMKQSA-STVKKVSMELGGNAPFIV 236
Query: 511 FDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM-------- 562
FDD +LD+AV +M F N G+ C+ A R++V IYD F +K+ VKK+
Sbjct: 237 FDDADLDQAVEGAMASKFRNAGQTCVCANRLYVHDGIYDEFAKKLAEAVKKLKVGNGLDE 296
Query: 563 --------NHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG------------------ 596
N KA ++K+ + A +GA+++ GGKR + G
Sbjct: 297 GVTQGPLINEKA-VEKVEKHIADAVEKGAKVVTGGKRHELGGNFFEPTVLSNVTADMLVS 355
Query: 597 ---------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTY 641
D + VI AN TE GLA+ F+ D+++ + ++ G V INT
Sbjct: 356 KEETFGPLAPVFKFDDEEEVIAIANDTEVGLAAYFFSRDLSRIWRVAEALEYGMVGINTG 415
Query: 642 NKTDVAAPFGGFKQSGFGKD 661
++V APFGG KQSG G++
Sbjct: 416 LISNVVAPFGGVKQSGLGRE 435
>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent,
lactaldehyde dehydrogenase, ALDH family 21 A1, and
related proteins. ALDH subfamily which includes Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and
NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22)
and like sequences.
Length = 453
Score = 296 bits (759), Expect = 5e-93
Identities = 139/441 (31%), Positives = 223/441 (50%), Gaps = 52/441 (11%)
Query: 268 MECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQN 327
++ NP + I V + D + A A E L +R ++ + ADL+++
Sbjct: 1 LDVHNPYDGEVIGKVPADDRADAEEALATARAGAEN-RRALPPHERMAILERAADLLKKR 59
Query: 328 KEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPI-AHARPNSNFTF 386
EE A I + + G A V +IDT + A ++I G IP+ A ++ +
Sbjct: 60 AEEFAKIIACEGGKPIKDARV-EVDRAIDTLRLAAEEAERIRGEEIPLDATQGSDNRLAW 118
Query: 387 TKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGF 446
T REP+GV ITP+N+PL +++ K+AP +A G VV+KP+ +PL+AL+LA++ V AG
Sbjct: 119 TIREPVGVVLAITPFNFPLNLVAHKLAPAIATGCPVVLKPASKTPLSALELAKILVEAGV 178
Query: 447 PKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKS 506
P+GV+ ++ G V G+A + ++ + FTGS G + +A K+++LELGG +
Sbjct: 179 PEGVLQVVTGEREVLGDAFAADERVAMLSFTGSAAVGEALRANAG---GKRIALELGGNA 235
Query: 507 PLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKMN--- 563
P+++ D +LD A+ G F++ G+ CIS RI+V +YD F+E V VKK+
Sbjct: 236 PVIVDRDADLDAAIEALAKGGFYHAGQVCISVQRIYVHEELYDEFIEAFVAAVKKLKVGD 295
Query: 564 ------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD------------------ 593
+ +++ + E+A GARLL GG+R
Sbjct: 296 PLDEDTDVGPLISEEAAERVERWVEEAVEAGARLLCGGERDGALFKPTVLEDVPRDTKLS 355
Query: 594 ------------RPGDVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTY 641
R D + I+ ANST+YGL +GIFT D+N A +K++ G V +N
Sbjct: 356 TEETFGPVVPIIRYDDFEEAIRIANSTDYGLQAGIFTRDLNVAFKAAEKLEVGGVMVNDS 415
Query: 642 NKTDV-AAPFGGFKQSGFGKD 661
+ PFGG K+SG G++
Sbjct: 416 SAFRTDWMPFGGVKESGVGRE 436
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation [Energy
metabolism, Other].
Length = 481
Score = 296 bits (760), Expect = 7e-93
Identities = 144/462 (31%), Positives = 225/462 (48%), Gaps = 57/462 (12%)
Query: 254 FINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDR 313
FING FV S G + INP + I V A + +VD A AA A +G W +++ +R
Sbjct: 4 FINGAFVES--GKTFANINPVDGRVIARVHEAGAAEVDAAVAAARAALKGPWGKMTVAER 61
Query: 314 GHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTI 373
L++ +AD +E+ ++ E D+G +LA + ++ FA
Sbjct: 62 ADLLYAVADEIERRFDDFLAAEVADTGKPRSLASHLDIPRGAANFRVFADVVKNAPTECF 121
Query: 374 PIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLT 433
+A + R+P+GV G+I+PWN PL++++WK+ P LA GNTVV+KPSE +P T
Sbjct: 122 EMATPDGKGALNYAVRKPLGVVGVISPWNLPLLLMTWKVGPALACGNTVVVKPSEETPGT 181
Query: 434 ALKLAELSVRAGFPKGVINILPGTG-AVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAE 492
A L E+ G PKGV N++ G G GE +++H + + FTG T TG IMK+AA+
Sbjct: 182 ATLLGEVMNAVGVPKGVYNVVHGFGPDSAGEFLTRHPGVDAITFTGETRTGSAIMKAAAD 241
Query: 493 SNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFL 552
+K VS ELGGK+ ++F D + D AV + F N G+ C+ R++V+ I+D F+
Sbjct: 242 G-VKPVSFELGGKNAAIVFADCDFDAAVAGILRSAFLNTGQVCLGTERVYVERPIFDRFV 300
Query: 553 EKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPGD 597
+ + + H DK++ Y A EGA ++ GG D
Sbjct: 301 AALKARAESLKIGVPDDPATNMGPLISAEHRDKVLSYYALAVEEGATVVTGGGVPDFGDA 360
Query: 598 VDA--------------------------------------VIKRANSTEYGLASGIFTS 619
+ VI AN T YGLA+ ++T
Sbjct: 361 LAGGAWVQPTIWTGLPDSARVVTEEIFGPCCHIAPFDSEEEVIALANDTPYGLAASVWTE 420
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKD 661
D+++A +++ G V++N++ D+ PFGG K SG G++
Sbjct: 421 DLSRAHRVARQMEVGIVWVNSWFLRDLRTPFGGSKLSGIGRE 462
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase (1.5.1.35),
also called gamma-aminobutyraldehyde dehydrogenase. This
enzyme can follow putrescine transaminase (EC 2.6.1.82)
for a two-step conversion of putrescine to
gamma-aminobutyric acid (GABA). The member from
Escherichia coli is characterized as a homotetramer that
binds one NADH per momomer. This enzyme belongs to the
medium-chain aldehyde dehydrogenases, and is quite
similar in sequence to the betaine aldehyde
dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 294 bits (755), Expect = 3e-92
Identities = 158/463 (34%), Positives = 246/463 (53%), Gaps = 56/463 (12%)
Query: 251 NQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSA 310
++L INGE V+ G NPA I + A+++ VD A AA+ AF EW + +
Sbjct: 2 HKLLINGELVSG-EGEKQPVYNPATGEVILEIAEASAEQVDAAVRAADAAF-AEWGQTTP 59
Query: 311 RDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILG 370
+ R + KLAD++E+N + A +ES + G + +D +++FAG + G
Sbjct: 60 KARAECLLKLADVIEENAQVFAELESRNCGKPLHSVFNDEIPAIVDVFRFFAGAARCLSG 119
Query: 371 STIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVS 430
A + + +R+P+GV I PWNYPLMM +WK+AP LAAGN VV+KPSE++
Sbjct: 120 LA---AGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVLKPSEIT 176
Query: 431 PLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSA 490
PLTALKLAEL+ + FP GV+NIL G G G+ ++ H K+R V TGS TG I+
Sbjct: 177 PLTALKLAELA-KDIFPAGVVNILFGRGKTVGDPLTGHEKVRMVSLTGSIATGEHILSHT 235
Query: 491 AESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDA 550
A S +K+ +ELGGK+P+++FDD ++D V F+N G++C +A RI+ IYD
Sbjct: 236 APS-IKRTHMELGGKAPVIVFDDADIDAVVEGVRTFGFYNAGQDCTAACRIYAQRGIYDT 294
Query: 551 FLEKV---------------VTEVKKMNHKAHLDKLIDYCEKAKSEG-ARLLIGGKRLDR 594
+EK+ TE+ ++ AHL++++ E+AK+ G +++ GG++
Sbjct: 295 LVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVMKAVEEAKALGHIKVITGGEKRKG 354
Query: 595 PG---------------------------------DVDAVIKRANSTEYGLASGIFTSDI 621
G D + V+ AN ++YGLAS ++T D+
Sbjct: 355 NGYYFAPTLLAGAKQDDAIVQKEVFGPVVSITSFDDEEQVVNWANDSQYGLASSVWTKDV 414
Query: 622 NKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDLDI 664
+A ++ G ++NT+ P GG K SG+GKD+ +
Sbjct: 415 GRAHRLSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDMSL 457
>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp.
4,4'-diapolycopene-dialdehyde dehydrogenase-like. The
4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH)
involved in C30 carotenoid synthesis in Methylomonas sp.
strain 16a and other similar sequences are present in
this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde
into 4,4'-diapolycopene-diacid.
Length = 453
Score = 276 bits (707), Expect = 2e-85
Identities = 133/444 (29%), Positives = 205/444 (46%), Gaps = 65/444 (14%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
NPA + V + + +V A A A + W+ L R + + + + +E
Sbjct: 1 RNPATGEVLGEVPVTDPAEVAAAVARARAA-QRAWAALGVEGRAQRLLRWKRALADHADE 59
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKR- 389
LA + ++G A V ++++ + A ++L P K+
Sbjct: 60 LAELLHAETGKPRADAG-LEVLLALEAIDWAARNAPRVLAP-----RKVPTGLLMPNKKA 113
Query: 390 ----EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAG 445
P GV G+I+PWNYPL+ + P LAAGN VV+KPSEV+PL LAE AG
Sbjct: 114 TVEYRPYGVVGVISPWNYPLLTPMGDIIPALAAGNAVVLKPSEVTPLVGELLAEAWAAAG 173
Query: 446 FPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGK 505
P+GV+ ++ G GA TG A+ + KV FTGS TG K+M +AAE L V LELGGK
Sbjct: 174 PPQGVLQVVTGDGA-TGAALIDA-GVDKVAFTGSVATGRKVMAAAAE-RLIPVVLELGGK 230
Query: 506 SPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKK---- 561
P+++ D +L++A ++ G N G+ CIS R++V ++YD F+ ++V + +
Sbjct: 231 DPMIVLADADLERAAAAAVWGAMVNAGQTCISVERVYVHESVYDEFVARLVAKARALRPG 290
Query: 562 -----------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG-------------- 596
M LD + + + A ++GA+ L GG R + G
Sbjct: 291 ADDIGDADIGPMTTARQLDIVRRHVDDAVAKGAKALTGGARSNGGGPFYEPTVLTDVPHD 350
Query: 597 -------------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVF 637
D D I AN + YGL++ +F+ D+ +A ++++G V
Sbjct: 351 MDVMREETFGPVLPVMPVADEDEAIALANDSRYGLSASVFSRDLARAEAIARRLEAGAVS 410
Query: 638 IN--TYNKTDVAAPFGGFKQSGFG 659
IN A PFGG K SG G
Sbjct: 411 INDVLLTAGIPALPFGGVKDSGGG 434
>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 1-like.
Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde (SSA) to succinate. SSADH
activity in Mycobacterium tuberculosis (Mtb) is encoded
by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb
GabD1 SSADH1 reportedly is an enzyme of the
gamma-aminobutyrate shunt, which forms a functional link
between two TCA half-cycles by converting
alpha-ketoglutarate to succinate.
Length = 429
Score = 275 bits (705), Expect = 3e-85
Identities = 138/419 (32%), Positives = 202/419 (48%), Gaps = 64/419 (15%)
Query: 296 AAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSI 355
A AF W + S +R L+ KLADL+ + K+ELA + +L+ G A + V
Sbjct: 7 RAHAAFL-AWRKTSFAERAALLRKLADLLRERKDELARLITLEMGKPIAEA-RAEVEKCA 64
Query: 356 DTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKM--- 412
+Y+A + L PI + + + EP+GV I PWN+P W++
Sbjct: 65 WICRYYAENAEAFLADE-PIETDAGKA---YVRYEPLGVVLGIMPWNFPF----WQVFRF 116
Query: 413 -APCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKI 471
AP L AGNTV++K + P AL + EL AGFP+GV L I+ ++
Sbjct: 117 AAPNLMAGNTVLLKHASNVPGCALAIEELFREAGFPEGVFQNLLIDSDQVEAIIA-DPRV 175
Query: 472 RKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNK 531
R V TGS G + A + NLKK LELGG P ++ DD +LDKAV+ ++ G N
Sbjct: 176 RGVTLTGSERAGRAVAAEAGK-NLKKSVLELGGSDPFIVLDDADLDKAVKTAVKGRLQNA 234
Query: 532 GENCISAGRIFVDSNIYDAFLEKVVTEVKK---------------MNHKAHLDKLIDYCE 576
G++CI+A R V ++YD FLEK V + + K D+L + E
Sbjct: 235 GQSCIAAKRFIVHEDVYDEFLEKFVEAMAALKVGDPMDEDTDLGPLARKDLRDELHEQVE 294
Query: 577 KAKSEGARLLIGGKRLDRPG---------------------------------DVDAVIK 603
+A + GA LL+GGKR D PG D + I
Sbjct: 295 EAVAAGATLLLGGKRPDGPGAFYPPTVLTDVTPGMPAYDEELFGPVAAVIKVKDEEEAIA 354
Query: 604 RANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
AN + +GL +FT+D+ +A ++++G VFIN K+D PFGG K+SG+G++L
Sbjct: 355 LANDSPFGLGGSVFTTDLERAERVARRLEAGMVFINGMVKSDPRLPFGGVKRSGYGREL 413
>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like.
Salicylaldehyde dehydrogenase (DoxF, SaliADH,
EC=1.2.1.65) involved in the upper naphthalene catabolic
pathway of Pseudomonas strain C18 and other similar
sequences are present in this CD.
Length = 432
Score = 272 bits (699), Expect = 2e-84
Identities = 137/422 (32%), Positives = 210/422 (49%), Gaps = 60/422 (14%)
Query: 289 DVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALK 348
D D A AA AF WS+ +R ++ K ADL+E ++E ++GA A
Sbjct: 1 DADQAVEAAAAAFP-AWSKTPPSERRDILLKAADLLESRRDEFIEAMMEETGATAAWA-G 58
Query: 349 THVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMML 408
+V ++ + A +I+G +IP +P + +EP+GV I PWN P+++
Sbjct: 59 FNVDLAAGMLREAASLITQIIGGSIPSD--KPGTL-AMVVKEPVGVVLGIAPWNAPVILG 115
Query: 409 SWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINIL---PGTGAVTGEAI 465
+ +A LAAGNTVV+K SE+SP T + + AG PKGV+N++ P EA+
Sbjct: 116 TRAIAYPLAAGNTVVLKASELSPRTHWLIGRVFHEAGLPKGVLNVVTHSPEDAPEVVEAL 175
Query: 466 SQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMG 525
H +RKV FTGST G I ++AA+ +LK V LELGGK+P ++ +D +LD A ++
Sbjct: 176 IAHPAVRKVNFTGSTRVGRIIAETAAK-HLKPVLLELGGKAPAIVLEDADLDAAANAALF 234
Query: 526 GVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM-------------NHKAHLDKLI 572
G F N G+ C+S RI V +I D F+EK+ +K+ + +L+
Sbjct: 235 GAFLNSGQICMSTERIIVHESIADEFVEKLKAAAEKLFAGPVVLGSLVSAAAADRVKELV 294
Query: 573 DYCEKAKSEGARLLIGGKRLDRPG----------------------------------DV 598
D A S+GA+L++GG + P D
Sbjct: 295 D---DALSKGAKLVVGGLADESPSGTSMPPTILDNVTPDMDIYSEESFGPVVSIIRVKDE 351
Query: 599 DAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVA-APFGGFKQSG 657
+ ++ AN +EYGL++ +FT D+ +A+ +I+SG V IN D P GG K SG
Sbjct: 352 EEAVRIANDSEYGLSAAVFTRDLARALAVAKRIESGAVHINGMTVHDEPTLPHGGVKSSG 411
Query: 658 FG 659
+G
Sbjct: 412 YG 413
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 273 bits (700), Expect = 3e-84
Identities = 132/443 (29%), Positives = 216/443 (48%), Gaps = 60/443 (13%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAF-EGEWSRLSARDRGHLMFKLADLMEQNKE 329
I+PA I + + + A AA +AF E +W+ R R ++ +LAD E N E
Sbjct: 2 IDPATGEVIGTYADGGVAEAEAAIAAARRAFDETDWAH-DPRLRARVLLELADAFEANAE 60
Query: 330 ELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKR 389
LA + +L++G + A + + +I +Y+AG G I P +F+ R
Sbjct: 61 RLARLLALENGKILGEA-RFEISGAISELRYYAGLARTEAGRMIEP---EPG-SFSLVLR 115
Query: 390 EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAE-LSVRAGFPK 448
EP+GV G+I PWN P+++L +AP LAAG TVV+KP+ + + L+ P
Sbjct: 116 EPMGVAGIIVPWNSPVVLLVRSLAPALAAGCTVVVKPAGQTAQINAAIIRILAEIPSLPA 175
Query: 449 GVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPL 508
GV+N+ +G+ + + + FTGST TG IM +AA LK++ LELGGK+P
Sbjct: 176 GVVNLFTESGSEGAAHLVASPDVDVISFTGSTATGRAIMAAAA-PTLKRLGLELGGKTPC 234
Query: 509 VIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVV------------ 556
++FDD +LD A+ + G+ C++ R+ V +I D +++
Sbjct: 235 IVFDDADLDAALPKLERALTIFAGQFCMAGSRVLVQRSIADEVRDRLAARLAAVKVGPGL 294
Query: 557 ---TEVKKMNHKAHLDKLIDYCEKAKSEGARLLIGGKRLD---------RP-----GDVD 599
+++ + +A++D++ E+A + GA +++ G + RP D D
Sbjct: 295 DPASDMGPLIDRANVDRVDRMVERAIAAGAEVVLRGGPVTEGLAKGAFLRPTLLEVDDPD 354
Query: 600 AVI----------------------KRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVF 637
A I AN T+YGLA+ ++T D+ +AM I +GTV+
Sbjct: 355 ADIVQEEIFGPVLTLETFDDEAEAVALANDTDYGLAASVWTRDLARAMRVARAIRAGTVW 414
Query: 638 INTYNKTDVAAPFGGFKQSGFGK 660
IN +NK A GG++QSG G+
Sbjct: 415 INDWNKLFAEAEEGGYRQSGLGR 437
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 270 bits (691), Expect = 1e-82
Identities = 163/462 (35%), Positives = 251/462 (54%), Gaps = 56/462 (12%)
Query: 249 FPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRL 308
F Q INGE++++ G ++ NPAN + SV +D+ A AA +A W L
Sbjct: 9 FRQQALINGEWLDANNGEVIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPA-WRAL 67
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
+A++R +++ + +LM +++++LA + +L+ G A K + + ++FA +I
Sbjct: 68 TAKERANILRRWFNLMMEHQDDLARLMTLEQGKPLAEA-KGEISYAASFIEWFAEEGKRI 126
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
G TIP H + + K +PIGV ITPWN+P M++ K P LAAG T+V+KP+
Sbjct: 127 YGDTIP-GH-QADKRLIVIK-QPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPAS 183
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGT-GAVTGEAISQHLKIRKVGFTGSTVTGMKIM 487
+P +AL LAEL++RAG P GV N++ G+ GAV GE S L +RK+ FTGST G ++M
Sbjct: 184 QTPFSALALAELAIRAGIPAGVFNVVTGSAGAVGGELTSNPL-VRKLSFTGSTEIGRQLM 242
Query: 488 KSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNI 547
+ A+ ++KKVSLELGG +P ++FDD +LDKAV ++ F N G+ C+ A R++V +
Sbjct: 243 EQCAK-DIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGV 301
Query: 548 YDAFLEKVVTEVKKMNHKAHLDK------LID---------YCEKAKSEGARLLIGGKR- 591
YD F EK+ V K++ L+K LID + A +GAR++ GGK
Sbjct: 302 YDRFAEKLQQAVSKLHIGDGLEKGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAH 361
Query: 592 --------------------------------LDRPGDVDAVIKRANSTEYGLASGIFTS 619
L R D VI +AN TE+GLA+ +
Sbjct: 362 ELGGNFFQPTILVDVPANAKVAKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYAR 421
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKD 661
D+++ + ++ G V INT ++ APFGG K SG G++
Sbjct: 422 DLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGRE 463
>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like.
Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was
first described in the moss Tortula ruralis and is
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and ALDH21A1 expression represents a
unique stress tolerance mechanism. So far, of plants,
only the bryophyte sequence has been observed, but
similar protein sequences from bacteria and archaea are
also present in this CD.
Length = 452
Score = 269 bits (689), Expect = 1e-82
Identities = 133/444 (29%), Positives = 211/444 (47%), Gaps = 63/444 (14%)
Query: 269 ECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNK 328
E NP + V +A DD++ A AA KAF L A R ++ +E+
Sbjct: 2 EVTNPYTGEVVARVALAGPDDIEEAIAAAVKAFR-PMRALPAHRRAAILLHCVARLEERF 60
Query: 329 EELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPI-AHARPNSNFTFT 387
EELA L++G A + V +IDT++ A +I G +P+ AR
Sbjct: 61 EELAETIVLEAGKPIKDA-RGEVARAIDTFRIAAEEATRIYGEVLPLDISARGEGRQGLV 119
Query: 388 KREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFP 447
+R PIG ITP+N+PL +++ K+AP +AAG V+KP+ +PL+AL L E+ G P
Sbjct: 120 RRFPIGPVSAITPFNFPLNLVAHKVAPAIAAGCPFVLKPASRTPLSALILGEVLAETGLP 179
Query: 448 KGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSP 507
KG ++LP + + + +I+ + FTGS G + A + KKV LELGG +
Sbjct: 180 KGAFSVLPCSRDDA-DLLVTDERIKLLSFTGSPAVGWDLKARAGK---KKVVLELGGNAA 235
Query: 508 LVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKK------ 561
+++ D +LD A + + G F+ G++CIS R+ V ++YD F ++V VK
Sbjct: 236 VIVDSDADLDFAAQRIIFGAFYQAGQSCISVQRVLVHRSVYDEFKSRLVARVKALKTGDP 295
Query: 562 ---------MNHKAHLDKLIDYCEKAKSEGARLLIGGKR--------------------- 591
M ++ +++ + +A GA+LL GGKR
Sbjct: 296 KDDATDVGPMISESEAERVEGWVNEAVDAGAKLLTGGKRDGALLEPTILEDVPPDMEVNC 355
Query: 592 ---------LDRPGDVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYN 642
++ D D + N +++GL +G+FT D+ KA+ D+++ G V IN
Sbjct: 356 EEVFGPVVTVEPYDDFDEALAAVNDSKFGLQAGVFTRDLEKALRAWDELEVGGVVIN--- 412
Query: 643 KTDV------AAPFGGFKQSGFGK 660
DV P+GG K SG G+
Sbjct: 413 --DVPTFRVDHMPYGGVKDSGIGR 434
>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. The proline catabolic enzymes, proline
dehydrogenase and Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), catalyze the two-step oxidation
of proline to glutamate; P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). In this CD, monofunctional enzyme
sequences such as seen in the Bacillus subtilis RocA
P5CDH are also present. These enzymes play important
roles in cellular redox control, superoxide generation,
and apoptosis.
Length = 512
Score = 270 bits (692), Expect = 2e-82
Identities = 147/467 (31%), Positives = 220/467 (47%), Gaps = 71/467 (15%)
Query: 253 LFINGEFVNSVGGSSMECINPANES-TICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
L I G+ V +E NPA+ S + +VQ A ++ + A AA AF W R
Sbjct: 35 LVIGGKEV--RTEEKIESRNPADPSEVLGTVQKATKEEAEAAVQAARAAFP-TWRRTPPE 91
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
+R L+ + A L+ + + ELA L+ G + A V +ID +Y+A ++ G
Sbjct: 92 ERARLLLRAAALLRRRRFELAAWMVLEVGKNWAEAD-ADVAEAIDFLEYYAREMLRLRGF 150
Query: 372 TIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSP 431
P+ N P+GV +I+PWN+PL +L+ L GNTVV+KP+E +P
Sbjct: 151 --PVEMVPGEDNRYVY--RPLGVGAVISPWNFPLAILAGMTTAALVTGNTVVLKPAEDTP 206
Query: 432 LTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
+ A KL E+ AG P GV+N LPG G G+ + +H +R + FTGS G++I + AA
Sbjct: 207 VIAAKLVEILEEAGLPPGVVNFLPGPGEEVGDYLVEHPDVRFIAFTGSREVGLRIYERAA 266
Query: 492 -----ESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSN 546
+ LK+V E+GGK+ +++ +D +LD+A + F +G+ C + R+ V +
Sbjct: 267 KVQPGQKWLKRVIAEMGGKNAIIVDEDADLDEAAEGIVRSAFGFQGQKCSACSRVIVHES 326
Query: 547 IYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKR 591
+YD FLE++V K + K D++ Y E KSEG RLL+GG+
Sbjct: 327 VYDEFLERLVERTKALKVGDPEDPEVYMGPVIDKGARDRIRRYIEIGKSEG-RLLLGGEV 385
Query: 592 LDRP-----------GDVD---------------AVIKR---------ANSTEYGLASGI 616
L+ DV AVIK AN TEYGL G+
Sbjct: 386 LELAAEGYFVQPTIFADVPPDHRLAQEEIFGPVLAVIKAKDFDEALEIANDTEYGLTGGV 445
Query: 617 FTSDINKAMYFVDKIDSGTVFINTYNKTDVA----APFGGFKQSGFG 659
F+ + + G ++ N K A PFGGFK SG G
Sbjct: 446 FSRSPEHLERARREFEVGNLYAN--RKITGALVGRQPFGGFKMSGTG 490
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 266 bits (681), Expect = 2e-81
Identities = 151/455 (33%), Positives = 234/455 (51%), Gaps = 61/455 (13%)
Query: 257 GEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHL 316
GE+ + +++ +NP T+ + A+ +DVD A AA A + EW+ ++R +
Sbjct: 1 GEWRDGTSERTIDVLNPYTGETLAEIPAASKEDVDEAYRAAAAA-QKEWAATLPQERAEI 59
Query: 317 MFKLADLMEQNKEELATIESLDSGAVYTLA-LKTHVGMSI-DTWKYFAGWCD-KILGSTI 373
+ K A ++E+ ++E+ +SG+ A ++ M+I F + +IL S +
Sbjct: 60 LEKAAQILEERRDEIVEWLIRESGSTRIKANIEWGAAMAITREAATFPLRMEGRILPSDV 119
Query: 374 PIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLT 433
P R REP+GV G+I+PWN+PL + +AP LA GN VV+KP+ +P+T
Sbjct: 120 PGKENR-------VYREPLGVVGVISPWNFPLHLSMRSVAPALALGNAVVLKPASDTPIT 172
Query: 434 A-LKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAE 492
L LA++ AG PKGV+N++ G G+ G+A +H R + FTGST G I + A
Sbjct: 173 GGLLLAKIFEEAGLPKGVLNVVVGAGSEIGDAFVEHPVPRLISFTGSTPVGRHIGELAGR 232
Query: 493 SNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFL 552
+LKKV+LELGG +P V+ +D ++D AV ++ G F ++G+ C++ RI V ++YD F+
Sbjct: 233 -HLKKVALELGGNNPFVVLEDADIDAAVNAAVFGKFLHQGQICMAINRIIVHEDVYDEFV 291
Query: 553 EKVVTEVKKM----------------NHKAHLDKLIDYCEKAKSEGARLLIGGKRLDR-- 594
EK V VK + N +D L+D E+A EGA LL+GG+
Sbjct: 292 EKFVERVKALPYGDPSDPDTVVGPLINESQ-VDGLLDKIEQAVEEGATLLVGGEAEGNVL 350
Query: 595 -P---GDVDA------------------------VIKRANSTEYGLASGIFTSDINKAMY 626
P DV ++ AN TEYGL+ +FTSD+ + +
Sbjct: 351 EPTVLSDVTNDMEIAREEIFGPVAPIIKADDEEEALELANDTEYGLSGAVFTSDLERGVQ 410
Query: 627 FVDKIDSGTVFINTYNKTDVA-APFGGFKQSGFGK 660
F +ID+G IN D PFGG K SG G+
Sbjct: 411 FARRIDAGMTHINDQPVNDEPHVPFGGEKNSGLGR 445
>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase
II-like. NAD-dependent, benzaldehyde dehydrogenase II
(XylC, BenzADH, EC=1.2.1.28) is involved in the
oxidation of benzyl alcohol to benzoate. In
Acinetobacter calcoaceticus, this process is carried out
by the chromosomally encoded, benzyl alcohol
dehydrogenase (xylB) and benzaldehyde dehydrogenase II
(xylC) enzymes; whereas in Pseudomonas putida they are
encoded by TOL plasmids.
Length = 443
Score = 261 bits (669), Expect = 5e-80
Identities = 141/432 (32%), Positives = 218/432 (50%), Gaps = 61/432 (14%)
Query: 278 TICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESL 337
+ V +A++ DVD AA A A + W+ R+R ++ + ADL+E++ +E+A
Sbjct: 3 VLGEVGVADAADVDRAAARAAAA-QRAWAATPPRERAAVLRRAADLLEEHADEIADWIVR 61
Query: 338 DSGAVYTLALKTH--VGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVC 395
+SG++ K VG +I AG + G +P A R + +R P+GV
Sbjct: 62 ESGSI---RPKAGFEVGAAIGELHEAAGLPTQPQGEILPSAPGRLS----LARRVPLGVV 114
Query: 396 GLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTA-LKLAELSVRAGFPKGVINIL 454
G+I+P+N+PL++ +AP LA GN VV+KP +P++ + +A L AG P GV+++L
Sbjct: 115 GVISPFNFPLILAMRSVAPALALGNAVVLKPDPRTPVSGGVVIARLFEEAGLPAGVLHVL 174
Query: 455 PGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDY 514
PG GA GEA+ + + + FTGST G K+ AA +LKKVSLELGGK+ L++ DD
Sbjct: 175 PG-GADAGEALVEDPNVAMISFTGSTAVGRKV-GEAAGRHLKKVSLELGGKNALIVLDDA 232
Query: 515 NLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKK------MNHKAHL 568
+LD A G F ++G+ C++AGR V ++ DA+ K+ + K + L
Sbjct: 233 DLDLAASNGAWGAFLHQGQICMAAGRHLVHESVADAYTAKLAAKAKHLPVGDPATGQVAL 292
Query: 569 DKLIDYCEKAKSE---------GARLLIGGKR---------LD--RPG------------ 596
LI+ + + GARL GG L +PG
Sbjct: 293 GPLINARQLDRVHAIVDDSVAAGARLEAGGTYDGLFYRPTVLSGVKPGMPAFDEEIFGPV 352
Query: 597 -------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFIN--TYNKTDVA 647
+ + AN TEYGL++GI + D+ +AM D++ +G + IN T N +
Sbjct: 353 APVTVFDSDEEAVALANDTEYGLSAGIISRDVGRAMALADRLRTGMLHINDQTVND-EPH 411
Query: 648 APFGGFKQSGFG 659
PFGG SG G
Sbjct: 412 NPFGGMGASGNG 423
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 259 bits (664), Expect = 3e-78
Identities = 142/464 (30%), Positives = 215/464 (46%), Gaps = 82/464 (17%)
Query: 260 VNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFK 319
V+ G + E P + +V ++ + DV+ AA A +A + W+ R+R ++ +
Sbjct: 26 VDGAAGPTREVTAPFTGEPLATVPVSTAADVE-AAFARARAAQRAWAATPVRERAAVLLR 84
Query: 320 LADLMEQNKEELATIESLDSGAVYTLALK--THVGMSIDTWKYFAGWCDKIL-----GST 372
DL+ +N+EEL + L++G A + V + T +Y+A K+L
Sbjct: 85 FHDLVLENREELLDLVQLETGKARRHAFEEVLDVAL---TARYYARRAPKLLAPRRRAGA 141
Query: 373 IPIA-HARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSP 431
+P+ R+P GV G+I+PWNYPL + P L AGN VV+KP +P
Sbjct: 142 LPVLTKTTEL-------RQPKGVVGVISPWNYPLTLAVSDAIPALLAGNAVVLKPDSQTP 194
Query: 432 LTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
LTAL EL AG P+ + ++ G G V G A+ + + FTGST TG + + A
Sbjct: 195 LTALAAVELLYEAGLPRDLWQVVTGPGPVVGTALVDN--ADYLMFTGSTATGRVLAEQAG 252
Query: 492 ESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAF 551
L SLELGGK+P+++ DD +LDKA ++ F N G+ CIS RI+V +IYD F
Sbjct: 253 R-RLIGFSLELGGKNPMIVLDDADLDKAAAGAVRACFSNAGQLCISIERIYVHESIYDEF 311
Query: 552 LEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRP- 595
+ V V+ M +A L+ + + + A ++GA +L GGK RP
Sbjct: 312 VRAFVAAVRAMRLGAGYDYSADMGSLISEAQLETVSAHVDDAVAKGATVLAGGKA--RPD 369
Query: 596 -----------------------------------GDVDAVIKRANSTEYGLASGIFTSD 620
DVD ++RAN T YGL + ++T D
Sbjct: 370 LGPLFYEPTVLTGVTPDMELAREETFGPVVSVYPVADVDEAVERANDTPYGLNASVWTGD 429
Query: 621 INKAMYFVDKIDSGTVFIN-----TYNKTDVAAPFGGFKQSGFG 659
+ +I +GTV +N + D AP GG K SG G
Sbjct: 430 TARGRAIAARIRAGTVNVNEGYAAAWGSVD--APMGGMKDSGLG 471
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in valine
metabolism and catalyses the NAD+- and CoA-dependent
oxidation of methylmalonate semialdehyde into
propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Length = 478
Score = 257 bits (659), Expect = 6e-78
Identities = 136/471 (28%), Positives = 209/471 (44%), Gaps = 69/471 (14%)
Query: 252 QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
+LFINGE+V S ++ NPA I V +A +++VD A AA+ AF WS
Sbjct: 2 KLFINGEWVESKTTEWLDVYNPATGEVIARVPLATAEEVDAAVAAAKAAFP-AWSATPVL 60
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
R +MFK L+E+N +ELA + +L+ G A + V ++ ++ + G
Sbjct: 61 KRQQVMFKFRQLLEENLDELARLITLEHGKTLADA-RGDVLRGLEVVEFACSIPHLLKGE 119
Query: 372 TIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSP 431
+ + T++ R+P+GV ITP+N+P M+ W +A GNT V+KPSE P
Sbjct: 120 YLENV--ARGID-TYSYRQPLGVVAGITPFNFPAMIPLWMFPMAIACGNTFVLKPSERVP 176
Query: 432 LTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
A++LAEL AG P GV+N++ G G A+ H I+ V F GST G I + AA
Sbjct: 177 GAAMRLAELLQEAGLPDGVLNVVHG-GKEAVNALLDHPDIKAVSFVGSTPVGEYIYERAA 235
Query: 492 ESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAF 551
+N K+V G K+ V+ D +L++ +G F G+ C++ + D +
Sbjct: 236 -ANGKRVQALGGAKNHAVVMPDADLEQTANALVGAAFGAAGQRCMALSVAVAVGDEADEW 294
Query: 552 LEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG 596
+ K+V KK+ A +++ E EGA+L++ G+ + PG
Sbjct: 295 IPKLVERAKKLKVGAGDDPGADMGPVISPAAKERIEGLIESGVEEGAKLVLDGRGVKVPG 354
Query: 597 -------------------------------------DVDAVIKRANSTEYGLASGIFTS 619
+D I N+ YG + IFT
Sbjct: 355 YENGNFVGPTILDNVTPDMKIYKEEIFGPVLSIVRVDTLDEAIAIINANPYGNGAAIFTR 414
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAP-----FGGFKQSGFGKDLDIN 665
A F ++D+G V IN + P FGG+K S FG DL
Sbjct: 415 SGAAARKFQREVDAGMVGIN----VPIPVPLAFFSFGGWKGSFFG-DLHFY 460
>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating
glyceraldehyde 3-phosphate dehydrogenase and ALDH family
11. NADP+-dependent non-phosphorylating glyceraldehyde
3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9)
catalyzes the irreversible oxidation of glyceraldehyde
3-phosphate to 3-phosphoglycerate generating NADPH for
biosynthetic reactions. This CD also includes the
Arabidopsis thaliana osmotic-stress-inducible ALDH
family 11, ALDH11A3 and similar sequences. In
autotrophic eukaryotes, NP-GAPDH generates NADPH for
biosynthetic processes from photosynthetic
glyceraldehyde-3-phosphate exported from the chloroplast
and catalyzes one of the classic glycolytic bypass
reactions unique to plants.
Length = 473
Score = 255 bits (654), Expect = 2e-77
Identities = 145/455 (31%), Positives = 218/455 (47%), Gaps = 55/455 (12%)
Query: 254 FINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDR 313
INGE+ S G ++E +P + I SV ++ ++ AA A A G W + +R
Sbjct: 5 LINGEWKES-SGKTIEVYSPIDGEVIGSVPALSALEILEAAETAYDAGRGWWPTMPLEER 63
Query: 314 GHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTI 373
+ K ADL+++NKEE+A + + G ALK V +ID + ++ G ++
Sbjct: 64 IDCLHKFADLLKENKEEVANLLMWEIGKTLKDALK-EVDRTIDYIRDTIEELKRLDGDSL 122
Query: 374 PIAHARPNSNFT-FTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPL 432
P +REP+GV I P+NYPL + K+ P L GNTVV KP+ L
Sbjct: 123 PGDWFPGTKGKIAQVRREPLGVVLAIGPFNYPLNLTVSKLIPALIMGNTVVFKPATQGVL 182
Query: 433 TALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAE 492
+ LAE AGFPKGV+N++ G G G+ + H +I + FTGST G ++ K
Sbjct: 183 LGIPLAEAFHDAGFPKGVVNVVTGRGREIGDPLVTHGRIDVISFTGSTEVGNRLKKQHP- 241
Query: 493 SNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFL 552
+K++ LELGGK P ++ D +L+ A + + G G+ C + R+ V ++ D +
Sbjct: 242 --MKRLVLELGGKDPAIVLPDADLELAAKEIVKGALSYSGQRCTAIKRVLVHESVADELV 299
Query: 553 EKVVTEVKKM------NHKAHLDKLI-----DYCEK----AKSEGARLLIGGKR------ 591
E + EV K+ ++ + LI D+ E A ++GA +L GG R
Sbjct: 300 ELLKEEVAKLKVGMPWDNGVDITPLIDPKSADFVEGLIDDAVAKGATVLNGGGREGGNLI 359
Query: 592 ----LD---------------------RPGDVDAVIKRANSTEYGLASGIFTSDINKAMY 626
LD R D++ I+ AN + YGL + IFT DINKA
Sbjct: 360 YPTLLDPVTPDMRLAWEEPFGPVLPIIRVNDIEEAIELANKSNYGLQASIFTKDINKARK 419
Query: 627 FVDKIDSGTVFINTYNK--TDVAAPFGGFKQSGFG 659
D ++ GTV IN+ + D PF G K SG G
Sbjct: 420 LADALEVGTVNINSKCQRGPDH-FPFLGRKDSGIG 453
>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of
Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized
aldehyde dehydrogenase of Synechococcus sp. PCC 7335
(locus EDX86601) and other similar sequences, are
present in this CD.
Length = 452
Score = 242 bits (621), Expect = 8e-73
Identities = 129/441 (29%), Positives = 195/441 (44%), Gaps = 60/441 (13%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
I+P + S I +A+ + V A A A +G W + +R ++ + +L+ N +E
Sbjct: 1 ISPIDGSVIAERPLASLEAVRAALERARAAQKG-WRAVPLEERKAIVTRAVELLAANTDE 59
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFT-FTKR 389
+A + G A GM ++ +Y ++ L F + +R
Sbjct: 60 IAEELTWQMGRPIAQAGGEIRGM-LERARYMISIAEEALADIRV----PEKDGFERYIRR 114
Query: 390 EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKG 449
EP+GV +I PWNYP + + P L AGN V++K S +PL + A AG P+G
Sbjct: 115 EPLGVVLIIAPWNYPYLTAVNAVIPALLAGNAVILKHSPQTPLCGERFAAAFAEAGLPEG 174
Query: 450 VINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLV 509
V +L + + I+ +I V FTGS G I ++AA KV LELGGK P
Sbjct: 175 VFQVLHLSHETSAALIADP-RIDHVSFTGSVAGGRAIQRAAAG-RFIKVGLELGGKDPAY 232
Query: 510 IFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKK-------- 561
+ D +LD A + G FFN G++C S RI+V +IYDAF+E V VK
Sbjct: 233 VRPDADLDAAAESLVDGAFFNSGQSCCSIERIYVHESIYDAFVEAFVAVVKGYKLGDPLD 292
Query: 562 -------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRL--DRPG----------DVD--- 599
+ D + A ++GAR LI G D+ G +VD
Sbjct: 293 PSTTLGPVVSARAADFVRAQIADAIAKGARALIDGALFPEDKAGGAYLAPTVLTNVDHSM 352
Query: 600 ---------------AV------IKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFI 638
V I N +EYGL + ++T DI +A +++++GTVF+
Sbjct: 353 RVMREETFGPVVGIMKVKSDAEAIALMNDSEYGLTASVWTKDIARAEALGEQLETGTVFM 412
Query: 639 NTYNKTDVAAPFGGFKQSGFG 659
N + D A + G K SG G
Sbjct: 413 NRCDYLDPALAWTGVKDSGRG 433
>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis
succinate-semialdehyde dehydrogenase 2-like.
Succinate-semialdehyde dehydrogenase 2 (SSADH2) and
similar proteins are in this CD. SSADH1 (GabD1,
EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation
of succinate semialdehyde to succinate. SSADH activity
in Mycobacterium tuberculosis is encoded by both gabD1
(Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1
was shown to be much higher than that of GabD2, and
GabD2 (SSADH2) is likely to serve physiologically as a
dehydrogenase for a different aldehyde(s).
Length = 454
Score = 241 bits (617), Expect = 3e-72
Identities = 128/453 (28%), Positives = 203/453 (44%), Gaps = 82/453 (18%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
P + + + DV+ AA A +A + W+ +R + + DL+ + ++E
Sbjct: 1 EAPFTGEPLGELPQSTPADVE-AAFARARAAQRAWAARPFAERAAVFLRFHDLVLERRDE 59
Query: 331 LATIESLDSGAVYTLALK--THVGMSIDTWKYFAGWCDKIL-----GSTIP-IAHARPNS 382
L + L++G A + V + +Y+A +++L IP + N
Sbjct: 60 LLDLIQLETGKARRHAFEEVLDVAI---VARYYARRAERLLKPRRRRGAIPVLTRTTVN- 115
Query: 383 NFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSV 442
R P GV G+I+PWNYPL + P L AGN VV+KP + LTAL EL +
Sbjct: 116 ------RRPKGVVGVISPWNYPLTLAVSDAIPALLAGNAVVLKPDSQTALTALWAVELLI 169
Query: 443 RAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLEL 502
AG P+ + ++ G G+ G AI + V FTGST TG + + A L SLEL
Sbjct: 170 EAGLPRDLWQVVTGPGSEVGGAIVDNADY--VMFTGSTATGRVVAERAGR-RLIGCSLEL 226
Query: 503 GGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM 562
GGK+P+++ +D +LDKA ++ F N G+ C+S RI+V ++YD F+ + V + +
Sbjct: 227 GGKNPMIVLEDADLDKAAAGAVRACFSNAGQLCVSIERIYVHESVYDEFVRRFVARTRAL 286
Query: 563 NHKA---------------HLDKLIDYCEKAKSEGARLLIGGKRLDRP------------ 595
A LD++ + + A ++GA +L GG+ RP
Sbjct: 287 RLGAALDYGPDMGSLISQAQLDRVTAHVDDAVAKGATVLAGGRA--RPDLGPYFYEPTVL 344
Query: 596 ------------------------GDVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKI 631
D D I+ AN T+YGL + ++T D + ++
Sbjct: 345 TGVTEDMELFAEETFGPVVSIYRVADDDEAIELANDTDYGLNASVWTRDGARGRRIAARL 404
Query: 632 DSGTVFIN-----TYNKTDVAAPFGGFKQSGFG 659
+GTV +N + D AP GG K SG G
Sbjct: 405 RAGTVNVNEGYAAAWASID--APMGGMKDSGLG 435
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 240 bits (616), Expect = 2e-71
Identities = 142/476 (29%), Positives = 218/476 (45%), Gaps = 87/476 (18%)
Query: 248 SFPNQLFINGEFVNSVGGSSMECINPANES-TICSVQMANSDDVDIAALAAEKAFEGEWS 306
+P L I GE + + INPAN+S + V A + + A AA +AFE W
Sbjct: 36 DYP--LIIGGERIT--TEDKIVSINPANKSEVVGRVSKATKELAEKAMQAALEAFE-TWK 90
Query: 307 RLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCD 366
+ S DR ++ + A ++ + K E + ++G + A +ID +Y+A
Sbjct: 91 KWSPEDRARILLRAAAIIRRRKHEFSAWLVKEAGKPWAEA-DADTAEAIDFLEYYAR--- 146
Query: 367 KILGSTIPIAHARP------NSNFTFTKREPIGVCGLITPWNYPL-MMLSWKMAPCLAAG 419
+ +A +P N F P+GV +I+PWN+P +M +A + AG
Sbjct: 147 ----QMLKLADGKPVESRPGEHNRYFY--IPLGVGVVISPWNFPFAIMAGMTLAA-IVAG 199
Query: 420 NTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGS 479
NTV++KP+ +P+ A K E+ AG P GV+N +PG+G+ G+ + H K R + FTGS
Sbjct: 200 NTVLLKPASDTPVIAAKFVEVLEEAGLPAGVVNFVPGSGSEVGDYLVDHPKTRFITFTGS 259
Query: 480 TVTGMKIMKSAAESN-----LKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGEN 534
G++I + AA+ LK+V E+GGK +V+ +D +LD A + F G+
Sbjct: 260 REVGLRIYERAAKVQPGQIWLKRVIAEMGGKDAIVVDEDADLDLAAESIVASAFGFSGQK 319
Query: 535 CISAGRIFVDSNIYDAFLEKVVTEVKKMN--------------HKAHLDKLIDYCEKAKS 580
C + R V ++YD LEKVV K++ ++A DK++ Y E K
Sbjct: 320 CSACSRAIVHEDVYDEVLEKVVELTKELTVGNPEDNAYMGPVINQASFDKIMSYIEIGKE 379
Query: 581 EGARLLIGGKRLDRPG---------DVD---------------AVIKR---------ANS 607
EG RL++GG+ D G DVD A IK AN+
Sbjct: 380 EG-RLVLGGEGDDSKGYFIQPTIFADVDPKARIMQEEIFGPVVAFIKAKDFDHALEIANN 438
Query: 608 TEYGLASGIFTSDINKAMYFVDKIDSGTVFINTY-NKTDVAA-----PFGGFKQSG 657
TEYGL + +++ + G N Y N+ A PFGGF SG
Sbjct: 439 TEYGLTGAVISNNREHLEKARREFHVG----NLYFNRGCTGAIVGYHPFGGFNMSG 490
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 234 bits (598), Expect = 5e-70
Identities = 120/392 (30%), Positives = 190/392 (48%), Gaps = 54/392 (13%)
Query: 317 MFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIA 376
+ K+A + + E++ + + G + LA + V + D Y A W + G I
Sbjct: 1 LRKIAAGIRERASEISALIVEEGGKIQQLA-EVEVAFTADYIDYMAEWARRYEGEIIQ-- 57
Query: 377 HARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALK 436
RP N KR +GV I PWN+P +++ KMAP L GNT+V+KPSE +P A+
Sbjct: 58 SDRPGENILLFKR-ALGVTTGILPWNFPFFLIARKMAPALLTGNTIVIKPSEFTPNNAIA 116
Query: 437 LAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLK 496
A++ G PKGV N++ G G G+ ++ + K+ V TGS G KIM +AA+ N+
Sbjct: 117 FAKIVDEIGLPKGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMAAAAK-NIT 175
Query: 497 KVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVV 556
KV LELGGK+P ++ DD +LD AV+ + N G+ C A R++V IYD F+ ++
Sbjct: 176 KVCLELGGKAPAIVMDDADLDLAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRLG 235
Query: 557 TEVKKMN----------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG---- 596
++ + + A L+++ +A EGAR+ +GGK ++ G
Sbjct: 236 EAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGARVALGGKAVEGKGYYYP 295
Query: 597 -----DV------------------------DAVIKRANSTEYGLASGIFTSDINKAMYF 627
DV + I AN ++YGL S I+T ++N AM
Sbjct: 296 PTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEEAIAMANDSDYGLTSSIYTQNLNVAMKA 355
Query: 628 VDKIDSGTVFINTYNKTDVAAPFGGFKQSGFG 659
+ + G +IN N + G+++SG G
Sbjct: 356 IKGLKFGETYINRENFEAMQGFHAGWRKSGIG 387
>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde
dehydrogenase PhpJ-like. Putative phosphonoformaldehyde
dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog
reportedly involved in the biosynthesis of
phosphinothricin tripeptides in Streptomyces
viridochromogenes DSM 40736, and similar sequences are
included in this CD.
Length = 451
Score = 230 bits (588), Expect = 4e-68
Identities = 137/453 (30%), Positives = 221/453 (48%), Gaps = 63/453 (13%)
Query: 269 ECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNK 328
E NP + +V + + ALA ++ S L+ R ++ K A L+E +
Sbjct: 2 EVRNPYTGEVVGTVPAGTEEALR-EALALAASYR---STLTRYQRSAILNKAAALLEARR 57
Query: 329 EELATIESLDSGAVYTLALKT---HVGMSIDTWKYFAGWCDKILGSTIP--IAHARPNSN 383
EE A + +L+SG L LK VG + D ++ A + G + + +
Sbjct: 58 EEFARLITLESG----LCLKDTRYEVGRAADVLRFAAAEALRDDGESFSCDLTANG-KAR 112
Query: 384 FTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVR 443
FT REP+GV ITP+N+PL ++ K+AP +AA N +V+KPSE +PL+A+ LA+L
Sbjct: 113 KIFTLREPLGVVLAITPFNHPLNQVAHKIAPAIAANNRIVLKPSEKTPLSAIYLADLLYE 172
Query: 444 AGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELG 503
AG P +++++ G G+ + H + V FTG G I AA + K+ LELG
Sbjct: 173 AGLPPDMLSVVTGEPGEIGDELITHPDVDLVTFTGGVAVGKAI---AATAGYKRQLLELG 229
Query: 504 GKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKK-- 561
G PL++ DD +L++A +++ G + N G+ C + RI V ++ D F++ +V +
Sbjct: 230 GNDPLIVMDDADLERAATLAVAGSYANSGQRCTAVKRILVHESVADEFVDLLVEKSAALV 289
Query: 562 ----MNHKAHLDKLID---------YCEKAKSEGARLLIGGKR---------LD------ 593
M+ + +ID E+A ++GAR+L+G +R LD
Sbjct: 290 VGDPMDPATDMGTVIDEEAAIQIENRVEEAIAQGARVLLGNQRQGALYAPTVLDHVPPDA 349
Query: 594 ---------------RPGDVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFI 638
R D+D I +NST YGL+SG+ T+D++ V+++D GTV +
Sbjct: 350 ELVTEETFGPVAPVIRVKDLDEAIAISNSTAYGLSSGVCTNDLDTIKRLVERLDVGTVNV 409
Query: 639 NTYNKTDVA-APFGGFKQSGFGKDLDINKAMYF 670
N +PFGG K SG G + +AM
Sbjct: 410 NEVPGFRSELSPFGGVKDSGLGGKEGVREAMKE 442
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 229 bits (585), Expect = 1e-67
Identities = 140/465 (30%), Positives = 199/465 (42%), Gaps = 97/465 (20%)
Query: 272 NPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEEL 331
+PA + SV +DVD A AA A EW++ S +R ++ L + +N+EE+
Sbjct: 2 DPATGQHLGSVPADTPEDVDEAIAAARAAQR-EWAKTSFAERRKVLRSLLKYILENQEEI 60
Query: 332 ATIESLDSGAVYTLALKTHVGMSID----TWKYFAGWCDKILGSTIPIAH--------AR 379
+ D+G KT V S+ T C+KI + H +R
Sbjct: 61 CRVACRDTG-------KTMVDASLGEILVT-------CEKI---RWTLKHGEKALRPESR 103
Query: 380 PNSNFTFTKR-----EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE-----V 429
P F KR EP+GV G I WNYP L + L AGN +V+K SE
Sbjct: 104 PGGLLMFYKRARVEYEPLGVVGAIVSWNYPFHNLLGPIIAALFAGNAIVVKVSEQVAWSS 163
Query: 430 SPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKS 489
++ L+ G ++ ++ T EA++ H I + F GS G K+M +
Sbjct: 164 GFFLSIIRECLAAC-GHDPDLVQLVTCLPE-TAEALTSHPVIDHITFIGSPPVGKKVMAA 221
Query: 490 AAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYD 549
AAES L V LELGGK P ++ DD +LD+ + M G F + G+NCI R+ V IYD
Sbjct: 222 AAES-LTPVVLELGGKDPAIVLDDADLDQIASIIMRGTFQSSGQNCIGIERVIVHEKIYD 280
Query: 550 AFLEKVVTEVKK---------------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDR 594
LE + V+ M A D+L + A +GARLL GGKR
Sbjct: 281 KLLEILTDRVQALRQGPPLDGDVDVGAMISPARFDRLEELVADAVEKGARLLAGGKRYPH 340
Query: 595 PG-------------------------------------DVDAVIKRANSTEYGLASGIF 617
P D + ++ ANSTEYGL + +F
Sbjct: 341 PEYPQGHYFPPTLLVDVTPDMKIAQEEVFGPVMVVMKASDDEEAVEIANSTEYGLGASVF 400
Query: 618 TSDINKAMYFVDKIDSGTVFINTYNKT--DVAAPFGGFKQSGFGK 660
DI +A ++++G V IN + PFGG K SGFG+
Sbjct: 401 GKDIKRARRIASQLETGMVAINDFGVNYYVQQLPFGGVKGSGFGR 445
>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 2, putative. This enzyme is the
second of two in the degradation of proline to
glutamate. This model represents one of several related
branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. Members of this branch may be associated
with proline dehydrogenase (the other enzyme of the
pathway from proline to glutamate) but have not been
demonstrated experimentally. The branches are not as
closely related to each other as some distinct aldehyde
dehydrogenases are to some; separate models were built
to let each model describe a set of equivalogs [Energy
metabolism, Amino acids and amines].
Length = 511
Score = 215 bits (548), Expect = 7e-62
Identities = 135/476 (28%), Positives = 218/476 (45%), Gaps = 90/476 (18%)
Query: 253 LFINGEFVNSVGGSSMECINPANES-TICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
L INGE V + + INP ++S + +V A+ + + A AA KAFE W +
Sbjct: 35 LVINGERVETEN--KIVSINPCDKSEVVGTVSKASQEHAEHALQAAAKAFE-AWKKTDPE 91
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
+R ++FK A ++ + + E + + + G + A V +ID +Y+A
Sbjct: 92 ERAAILFKAAAIVRRRRHEFSALLVKEVGKPWNEA-DAEVAEAIDFMEYYAR-------Q 143
Query: 372 TIPIAHARPNSNFTFTKRE----PIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPS 427
I +A +P ++ + P GV +I+PWN+P ++ + GN VV+KP+
Sbjct: 144 MIELAKGKPVNSREGETNQYVYTPTGVTVVISPWNFPFAIMVGMTVAPIVTGNCVVLKPA 203
Query: 428 EVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIM 487
E +P+ A K E+ AG PKGV+ +PG+G+ G+ + H K + FTGS G +I
Sbjct: 204 EAAPVIAAKFVEILEEAGLPKGVVQFVPGSGSEVGDYLVDHPKTSLITFTGSREVGTRIF 263
Query: 488 KSAA-----ESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIF 542
+ AA + +LK+V E+GGK +++ +D +++ A + + F G+ C + R
Sbjct: 264 ERAAKVQPGQKHLKRVIAEMGGKDTVIVDEDADIELAAQSAFTSAFGFAGQKCSAGSRAV 323
Query: 543 VDSNIYDAFLEKVV--TEVKKMN-------------HKAHLDKLIDYCEKAKSEGARLLI 587
V +YD +E+ V TE K+ + +K+++Y E K+EG RL+
Sbjct: 324 VHEKVYDEVVERFVEITESLKVGPPDSADVYVGPVIDQKSFNKIMEYIEIGKAEG-RLVS 382
Query: 588 GGKRLDRPG---------DVD---------------AVIKR---------ANSTEYGLAS 614
GG D G DVD A I+ AN+TEYGL
Sbjct: 383 GGCGDDSKGYFIGPTIFADVDRKARLAQEEIFGPVVAFIRASDFDEALEIANNTEYGLTG 442
Query: 615 GIFTSD---INKA--------MYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFG 659
G+ +++ IN+A +YF I V PFGGFK SG
Sbjct: 443 GVISNNRDHINRAKAEFEVGNLYFNRNITGAIVGYQ---------PFGGFKMSGTD 489
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that includes
Rv0768 from Mycobacterium tuberculosis. All members of
this family belong to species predicted to synthesize
mycofactocin, suggesting that this enzyme or another
upstream or downstream in the same pathway might be
mycofactocin-dependent. However, the taxonomic range of
this family is not nearly broad enough to make that
relationship conclusive [Unknown function, Enzymes of
unknown specificity].
Length = 480
Score = 211 bits (538), Expect = 1e-60
Identities = 142/466 (30%), Positives = 210/466 (45%), Gaps = 60/466 (12%)
Query: 252 QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAF-EGEWSRLSA 310
+L I+G+ V G+ +NPA E + A + D+D A AA +AF E +WSR
Sbjct: 2 RLLIDGKLVAGSAGT-FPTVNPATEEVLGVAADATAADMDAAIAAARRAFDETDWSR-DT 59
Query: 311 RDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILG 370
R + +L D + + EEL + + GA L + +D + A +
Sbjct: 60 ALRVRCLRQLRDALRAHVEELRELTIAEVGAPRMLTAGAQLEGPVDDLGFAADLAESYAW 119
Query: 371 STIPIAHARPN--SNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
+T + A P +RE +GV G ITPWN+P + K+ P LAAGNTVV+KP+
Sbjct: 120 TT-DLGVASPMGIPTRRTLRREAVGVVGAITPWNFPHQINLAKLGPALAAGNTVVLKPAP 178
Query: 429 VSPLTALKLAELSVR-AGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIM 487
+P A L EL FP GV+NI+ + G +++ ++ V FTGST TG +M
Sbjct: 179 DTPWCAAVLGELIAEHTDFPPGVVNIVTSSDHRLGALLAKDPRVDMVSFTGSTATGRAVM 238
Query: 488 KSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNI 547
AA + LKKV LELGGKS ++ DD +L A M+ V + G+ C R+ V
Sbjct: 239 ADAAAT-LKKVFLELGGKSAFIVLDDADLAAACSMAAFTVCMHAGQGCAITTRLVVPRAR 297
Query: 548 YDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKR- 591
YD + + + D++ Y + A +EG R GG R
Sbjct: 298 YDEAVAAAAATMGSIKPGDPADPGTVCGPVISARQRDRVQSYLDLAVAEGGRFACGGGRP 357
Query: 592 LDRP-----------------------------------GDVDAVIKRANSTEYGLASGI 616
DR GD DAV + AN + YGL+ +
Sbjct: 358 ADRDRGFFVEPTVIAGLDNNARVAREEIFGPVLTVIAHDGDDDAV-RIANDSPYGLSGTV 416
Query: 617 FTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
F +D +A ++ +GTV +N APFGG+KQSG G+++
Sbjct: 417 FGADPERAAAVAARVRTGTVNVNGGVWYSADAPFGGYKQSGIGREM 462
>gnl|CDD|181826 PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed.
Length = 457
Score = 208 bits (532), Expect = 4e-60
Identities = 133/441 (30%), Positives = 207/441 (46%), Gaps = 55/441 (12%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
INPA T+ + D+VD A A F ++ + R ADL+E ++
Sbjct: 6 INPATGETVKTFTALTDDEVDAAIARAHARFR-DYRTTTFAQRARWANAAADLLEAEADQ 64
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKRE 390
+A + +L+ G A K ++Y+A + +L P A ++ + + +
Sbjct: 65 VAALMTLEMGKTLASA-KAEALKCAKGFRYYAEHAEALLADE-PADAAAVGASRAYVRYQ 122
Query: 391 PIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGV 450
P+GV + PWN+PL + AP L AGN ++K + P TAL LA+L RAGFP G
Sbjct: 123 PLGVVLAVMPWNFPLWQVVRFAAPALMAGNVGLLKHASNVPQTALYLADLFRRAGFPDGC 182
Query: 451 I-NILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLV 509
+L G+GAV EAI + ++ TGS G + A + +KK LELGG P +
Sbjct: 183 FQTLLVGSGAV--EAILRDPRVAAATLTGSEPAGRAVAAIAGDE-IKKTVLELGGSDPFI 239
Query: 510 IFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVV------------- 556
+ +LD+A ++ N G++CI+A R V +++YDAF EK V
Sbjct: 240 VMPSADLDRAAETAVTARVQNNGQSCIAAKRFIVHADVYDAFAEKFVARMAALRVGDPTD 299
Query: 557 --TEVKKMNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG------------------ 596
T+V + + D++ + A + GA +L GGKR D PG
Sbjct: 300 PDTDVGPLATEQGRDEVEKQVDDAVAAGATILCGGKRPDGPGWFYPPTVITDITPDMRLY 359
Query: 597 ---------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTY 641
D+D I+ AN+T +GL S +T D + F+D +++G VFIN
Sbjct: 360 TEEVFGPVASLYRVADIDEAIEIANATTFGLGSNAWTRDEAEQERFIDDLEAGQVFINGM 419
Query: 642 NKTDVAAPFGGFKQSGFGKDL 662
+ PFGG K+SG+G++L
Sbjct: 420 TVSYPELPFGGVKRSGYGREL 440
>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde
dehydrogenase. This family of genes are members of the
pfam00171 NAD-dependent aldehyde dehydrogenase family.
These genes are observed in Ralstonia eutropha JMP134,
Sinorhizobium meliloti 1021, Burkholderia mallei ATCC
23344, Burkholderia thailandensis E264, Burkholderia
cenocepacia AU 1054, Burkholderia pseudomallei K96243
and 1710b, Burkholderia xenovorans LB400, Burkholderia
sp. 383 and Polaromonas sp. JS666 in close proximity to
the PhnW gene (TIGR02326) encoding 2-aminoethyl
phosphonate aminotransferase (which generates
phosphonoacetaldehyde) and PhnA (TIGR02335) encoding
phosphonoacetate hydrolase (not to be confused with the
alkylphosphonate utilization operon protein PhnA modeled
by TIGR00686). Additionally, transporters believed to be
specific for 2-aminoethyl phosphonate are often present.
PhnW is, in other organisms, coupled with PhnX
(TIGR01422) for the degradation of phosphonoacetaldehyde
(GenProp0238), but PhnX is apparently absent in each of
the organisms containing this aldehyde reductase. PhnA,
characterized in a strain of Pseudomonas fluorescens
that has not het been genome sequenced, is only rarely
found outside of the PhnW and aldehyde dehydrogenase
context. For instance in Rhodopseudomonas and Bordetella
bronchiseptica, where it is adjacent to transporters
presumably specific for the import of phosphonoacetate.
It seems reasonably certain then, that this enzyme
catalyzes the NAD-dependent oxidation of
phosphonoacetaldehyde to phosphonoacetate, bridging the
metabolic gap between PhnW and PhnA. We propose the name
phosphonoacetaldehyde dehydrogenase and the gene symbol
PhnY for this enzyme.
Length = 472
Score = 201 bits (512), Expect = 4e-57
Identities = 140/476 (29%), Positives = 225/476 (47%), Gaps = 82/476 (17%)
Query: 253 LFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARD 312
L I GE V+ +E P N + + +V A+ DDV A A A+ L+ +
Sbjct: 6 LRIAGEKVSR--DRVIEVRYPYNGTVVGTVPKASVDDVR-RAFAIAAAYR---PTLTRYE 59
Query: 313 RGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKT---HVGMSIDTWKYFAGWCDKIL 369
R ++ + A L+ KEE++ + +L+SG L+ K VG D + A +
Sbjct: 60 RSAILDRAAALLAARKEEISDLITLESG----LSKKDSLYEVGRVADVLTFAAAEALRDD 115
Query: 370 GSTI-----PIAHARPNSNFTFTKREPI-GVCGLITPWNYPLMMLSWKMAPCLAAGNTVV 423
G P AR FT+REP+ GV ITP+N+P+ ++ K+AP +A N +V
Sbjct: 116 GQIFSCDLTPHGKARK----VFTQREPLLGVISAITPFNHPMNQVAHKIAPAIATNNRMV 171
Query: 424 MKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTG 483
+KPSE +PL+AL LA++ AG P ++ ++ G + + + + V FTG G
Sbjct: 172 VKPSEKTPLSALYLADILYEAGLPPQMLQVVTGDPREIADELITNPHVDLVTFTGGVAIG 231
Query: 484 MKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFV 543
I AA + ++ LELGG PL++ +D +LD+A +++ G + N G+ C + R+ V
Sbjct: 232 KYI---AARAGYRRQVLELGGNDPLIVMEDADLDRAADLAVKGSYKNSGQRCTAVKRMLV 288
Query: 544 DSNIYDAFLEKVVTEVKK------MNHKAHLDKLID-----YCE----KAKSEGARLLIG 588
++ D F E +V + + M+ + +ID E +A ++GARLL+G
Sbjct: 289 QESVADRFTELLVEKTRAWRYGDPMDPSVDMGTVIDEAAAILFEARVNEAIAQGARLLLG 348
Query: 589 GKR---------LDRPG---------------------DVDAVIKRANSTEYGLASGIFT 618
R LDR D+D I+ +NST YGL+SG+ T
Sbjct: 349 NVRDGALYAPTVLDRVDPSMTLVREETFGPVSPVIRFCDIDDAIRISNSTAYGLSSGVCT 408
Query: 619 SDINKAMYFVDKIDSGTVFINTYNKTDV------AAPFGGFKQSGFGKDLDINKAM 668
+ ++ F+ ++ GTV N +V PFGG K SG G + +AM
Sbjct: 409 NRLDYITRFIAELQVGTV-----NVWEVPGYRLELTPFGGIKDSGLGYKEGVQEAM 459
>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde
dehydrogenase, AstD-like. N-succinylglutamate
5-semialdehyde dehydrogenase or succinylglutamic
semialdehyde dehydrogenase (SGSD, E. coli AstD,
EC=1.2.1.71) involved in L-arginine degradation via the
arginine succinyltransferase (AST) pathway and catalyzes
the NAD+-dependent reduction of succinylglutamate
semialdehyde into succinylglutamate.
Length = 431
Score = 198 bits (505), Expect = 2e-56
Identities = 127/426 (29%), Positives = 196/426 (46%), Gaps = 72/426 (16%)
Query: 289 DVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGA------- 341
VD A AA AF W+ LS +R ++ + A+L++ NKEELA + S ++G
Sbjct: 1 QVDAAVAAARAAF-PGWAALSLEERAAILRRFAELLKANKEELARLISRETGKPLWEAQT 59
Query: 342 -VYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITP 400
V +A K + +SI + G ++ P+A R + P GV + P
Sbjct: 60 EVAAMAGK--IDISIKAYHERTG--ER----ATPMAQGR-----AVLRHRPHGVMAVFGP 106
Query: 401 WNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAV 460
+N+P + + + P L AGNTVV KPSE++P A + EL AG P GV+N++ G G
Sbjct: 107 FNFPGHLPNGHIVPALLAGNTVVFKPSELTPAVAELMVELWEEAGLPPGVLNLVQG-GRE 165
Query: 461 TGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAV 520
TGEA++ H I + FTGS TG+ + + A K ++LE+GG +PLV++D ++D A
Sbjct: 166 TGEALAAHEGIDGLLFTGSAATGLLLHRQFAGRPGKILALEMGGNNPLVVWDVADIDAAA 225
Query: 521 RMSMGGVFFNKGENCISAGRIFV-DSNIYDAFLEKVVTEVKKMN---------------H 564
+ + F G+ C A R+ V D + DAFLE++V K++
Sbjct: 226 YLIVQSAFLTAGQRCTCARRLIVPDGAVGDAFLERLVEAAKRLRIGAPDAEPPFMGPLII 285
Query: 565 KAHLDKLIDYCEKAKSEGARLLIGGKRLD------RPG---------------------- 596
A + + + + G L+ +RL PG
Sbjct: 286 AAAAARYLLAQQDLLALGGEPLLAMERLVAGTAFLSPGIIDVTDAADVPDEEIFGPLLQV 345
Query: 597 ----DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFIN-TYNKTDVAAPFG 651
D D I AN+T +GL++G+ + D F+ +I +G V N APFG
Sbjct: 346 YRYDDFDEAIALANATRFGLSAGLLSDDEALFERFLARIRAGIVNWNRPTTGASSTAPFG 405
Query: 652 GFKQSG 657
G SG
Sbjct: 406 GVGLSG 411
>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase, ALDH family members 7A1 and
7B. Alpha-aminoadipic semialdehyde dehydrogenase
(AASADH, EC=1.2.1.31), also known as ALDH7A1,
Antiquitin-1, ALDH7B, or
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH),
is a NAD+-dependent ALDH. Human ALDH7A1 is involved in
the pipecolic acid pathway of lysine catabolism,
catalyzing the oxidation of alpha-aminoadipic
semialdehyde to alpha-aminoadipate. Arabidopsis
thaliana ALDH7B4 appears to be an
osmotic-stress-inducible ALDH gene encoding a
turgor-responsive or stress-inducible ALDH. The
Streptomyces clavuligerus P6CDH appears to be involved
in cephamycin biosynthesis, catalyzing the second stage
of the two-step conversion of lysine to
alpha-aminoadipic acid. The ALDH7A1 enzyme and others
in this group have been observed as tetramers, yet the
bacterial P6CDH enzyme has been reported as a monomer.
Length = 474
Score = 197 bits (502), Expect = 1e-55
Identities = 134/459 (29%), Positives = 219/459 (47%), Gaps = 63/459 (13%)
Query: 256 NGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGH 315
+GE+ GG + I+PAN I V+ A +D + AA++AF+ EW + A RG
Sbjct: 4 DGEWG--GGGGVVTSISPANGEPIARVRQATPEDYESTIKAAQEAFK-EWRDVPAPKRGE 60
Query: 316 LMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPI 375
++ ++ D + + KE L + SL+ G + L V ID + G ++ G TIP
Sbjct: 61 IVRQIGDALRKKKEALGKLVSLEMGKILPEGLG-EVQEMIDICDFAVGLSRQLYGLTIP- 118
Query: 376 AHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTAL 435
RP + + P+GV G+IT +N+P+ + W A L GN VV KPS +PLTA+
Sbjct: 119 -SERPG-HRMMEQWNPLGVVGVITAFNFPVAVWGWNAAIALVCGNVVVWKPSPTTPLTAI 176
Query: 436 K----LAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
+A + + G P + +++ G GA GEA+ + ++ V FTGST G ++ ++ A
Sbjct: 177 AVTKIVARVLEKNGLPGAIASLVCG-GADVGEALVKDPRVPLVSFTGSTAVGRQVGQAVA 235
Query: 492 ESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAF 551
+ LELGG + +++ +D +LD AVR + G+ C + R+ V +IYD
Sbjct: 236 A-RFGRSLLELGGNNAIIVMEDADLDLAVRAVLFAAVGTAGQRCTTTRRLIVHESIYDEV 294
Query: 552 LEKVVTEVKK---------------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG 596
LE++ K+ ++ KA +D + E+AKS+G +L GGK +D PG
Sbjct: 295 LERLKKAYKQVRIGDPLDDGTLVGPLHTKAAVDNYLAAIEEAKSQGGTVLFGGKVIDGPG 354
Query: 597 --------------------------------DVDAVIKRANSTEYGLASGIFTSDINKA 624
++ I N GL+S IFT+D+ A
Sbjct: 355 NYVEPTIVEGLSDAPIVKEETFAPILYVLKFDTLEEAIAWNNEVPQGLSSSIFTTDLRNA 414
Query: 625 MYFVDKI--DSGTVFINT-YNKTDVAAPFGGFKQSGFGK 660
++ D G V +N + ++ FGG K++G G+
Sbjct: 415 FRWLGPKGSDCGIVNVNIGTSGAEIGGAFGGEKETGGGR 453
>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde
dehydrogenase. Members of this protein family are
succinylglutamic semialdehyde dehydrogenase (EC
1.2.1.71), the fourth enzyme in the arginine
succinyltransferase (AST) pathway for arginine
catabolism [Energy metabolism, Amino acids and amines].
Length = 484
Score = 189 bits (483), Expect = 7e-53
Identities = 131/467 (28%), Positives = 215/467 (46%), Gaps = 82/467 (17%)
Query: 253 LFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARD 312
LFI+G++ G S NPA + + A++ V+ A AA AF W+RLS +
Sbjct: 1 LFIDGKWRAG-QGESFSSTNPATQEVLWQGAAASAAQVEAAVAAARAAFPA-WARLSLEE 58
Query: 313 RGHLMFKLADLMEQNKEELATIESLDSGA--------VYTLALKTHVGMSIDTWKYFAGW 364
R ++ + A L+E+ KE LA + + ++G V ++ K V +SI + G
Sbjct: 59 RIAVVQRFAALLEERKEALARVIARETGKPLWETRTEVASMIGK--VAISIKAYHERTG- 115
Query: 365 CDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVM 424
+ +P A + P GV + P+N+P + + + P L AGNTVV
Sbjct: 116 ---ESENPMPDGRA-------VLRHRPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVF 165
Query: 425 KPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGM 484
KPSE++P A + +L +AG P GV+N++ G TG A++ H I + FTGS+ TG
Sbjct: 166 KPSELTPWVAEETVKLWEKAGLPAGVLNLVQG-ARETGVALAAHPDIDGLLFTGSSNTGH 224
Query: 485 KIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVD 544
+ + A K ++LE+GG +PL++ + ++D AV + + F + G+ C A R+ V
Sbjct: 225 LLHRQFAGRPEKILALEMGGNNPLIVDEVADIDAAVHLIIQSAFISAGQRCTCARRLLVP 284
Query: 545 SNIY-DAFLEKVVTEVKKM-----------------NHKAHLDKLIDYCEKAKSEGARLL 586
DAFL ++V +++ + +A +L+ K + G + L
Sbjct: 285 DGAQGDAFLARLVEVAERLTVGAWDAEPQPFMGAVISLQA-AQRLLAAQAKLLALGGKSL 343
Query: 587 IGGKRLD------RPG--------------------------DVDAVIKRANSTEYGLAS 614
+ ++LD PG D D I AN+T +GL++
Sbjct: 344 LAMRQLDPGAALLTPGIIDVTGVAELPDEEHFGPLLQVIRYDDFDEAIAIANNTRFGLSA 403
Query: 615 GIFTSDINKAMYFVDKIDSGTVFINTYNK----TDVAAPFGGFKQSG 657
G+ + D F+ +I +G V +NK AAPFGG SG
Sbjct: 404 GLLSDDRELYDRFLLEIRAGIV---NWNKPLTGASSAAPFGGIGASG 447
>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase;
Reviewed.
Length = 487
Score = 182 bits (464), Expect = 3e-50
Identities = 132/468 (28%), Positives = 212/468 (45%), Gaps = 84/468 (17%)
Query: 253 LFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARD 312
L+ING+++ G + E NP + + A + VD A AA AF W+RLS +
Sbjct: 3 LWINGDWIAGQG-EAFESRNPVSGEVLWQGNDATAAQVDAAVRAARAAFPA-WARLSFEE 60
Query: 313 RGHLMFKLADLMEQNKEELATIESLDSGA--------VYTLALKTHVGMSIDTWKYFAGW 364
R ++ + A L+E+NKEELA + + ++G V + K + +SI + G
Sbjct: 61 RQAIVERFAALLEENKEELAEVIARETGKPLWEAATEVTAMINK--IAISIQAYHERTGE 118
Query: 365 -CDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVV 423
++ + H P GV + P+N+P + + + P L AGNTVV
Sbjct: 119 KRSEMADGAAVLRH------------RPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVV 166
Query: 424 MKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTG 483
KPSE++P A +L +AG P GV+N++ G G TG+A++ H I + FTGS TG
Sbjct: 167 FKPSELTPWVAELTVKLWQQAGLPAGVLNLVQG-GRETGKALAAHPDIDGLLFTGSANTG 225
Query: 484 MKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFV 543
+ + A K ++LE+GG +PLVI + ++D AV + + F + G+ C A R+ V
Sbjct: 226 YLLHRQFAGQPEKILALEMGGNNPLVIDEVADIDAAVHLIIQSAFISAGQRCTCARRLLV 285
Query: 544 DSNIY-DAFLEKVVTEVKKM-----------------NHKAHLDKLIDYCEKAKSEGARL 585
DAFL ++V K++ + +A L+ + + G +
Sbjct: 286 PQGAQGDAFLARLVAVAKRLTVGRWDAEPQPFMGAVISEQA-AQGLVAAQAQLLALGGKS 344
Query: 586 LIGGKRLD--------------------------------RPGDVDAVIKRANSTEYGLA 613
L+ +L R D D I+ AN+T +GL+
Sbjct: 345 LLEMTQLQAGTGLLTPGIIDVTGVAELPDEEYFGPLLQVVRYDDFDEAIRLANNTRFGLS 404
Query: 614 SGIFTSDINKAMYFVDKIDSGTVFINTYNK----TDVAAPFGGFKQSG 657
+G+ + D F+ +I +G V +NK AAPFGG SG
Sbjct: 405 AGLLSDDREDYDQFLLEIRAGIV---NWNKPLTGASSAAPFGGVGASG 449
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 179 bits (456), Expect = 7e-49
Identities = 135/464 (29%), Positives = 215/464 (46%), Gaps = 71/464 (15%)
Query: 254 FINGEFVNSVGGSSMECINPA-NESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARD 312
INGE + G I+PA +E TI V +A+++DVD AALA A WS +
Sbjct: 36 IINGEE--TETGEGAPVIDPADHERTIGEVSLADAEDVD-AALAIAAAAFAGWSATPVEE 92
Query: 313 RGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMS--IDTWKYFAGWCDKILG 370
R ++ K ADL+E N+ EL + + ++G TLA + ID +Y+A ++
Sbjct: 93 RAEILEKAADLLEANRGELIALAAAEAGK--TLA-DADAEVREAIDFCRYYAAQARELFS 149
Query: 371 STIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVS 430
+ R + VC I+PWN+PL + + ++A LAAGNTV+ KP+E +
Sbjct: 150 DPELPGPTGELNGLELHGRG-VFVC--ISPWNFPLAIFTGQIAAALAAGNTVIAKPAEQT 206
Query: 431 PLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSA 490
PL A + EL AG P+ V+ ++PG G GEA+ H +I V FTGST T I ++
Sbjct: 207 PLIAARAVELLHEAGVPRDVLQLVPGDGEEIGEALVAHPRIDGVIFTGSTETAKLINRAL 266
Query: 491 AESNLKKVSL--ELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRI-FVDSNI 547
AE + + L E GGK+ +++ ++AV+ + F + G+ C SA R+ ++ I
Sbjct: 267 AERDGPILPLIAETGGKNAMIVDSTALPEQAVKDVVQSAFGSAGQRC-SALRLLYLQEEI 325
Query: 548 YDAFLEKVV---------------TEVKKMNHKAHLDKLIDYCEKAKSE----------- 581
+ F+E + T+V + K L + E + E
Sbjct: 326 AERFIEMLKGAMASLKVGDPWDLSTDVGPLIDKPAGKLLRAHTELMRGEAWLIAPAPLDD 385
Query: 582 --------GARLLIGGKRLDR-------------PGDVDAVIKRANSTEYGLASGIFTSD 620
G ++G L D+D I+ N+T YGL GI + D
Sbjct: 386 GNGYFVAPGIIEIVGIFDLTTEVFGPILHVIRFKAEDLDEAIEDINATGYGLTLGIHSRD 445
Query: 621 INKAMYFVDKIDSGTVFINTYNKTDVAA-----PFGGFKQSGFG 659
+ Y+ +++++G ++I N+ A PFGG+ SG G
Sbjct: 446 EREIEYWRERVEAGNLYI---NRNITGAIVGRQPFGGWGLSGTG 486
>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent
delta(1)-pyrroline-5-carboxylate dehydrogenase-like.
ALDH subfamily of the NAD+-dependent,
delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH,
EC=1.5.1.12). The proline catabolic enzymes, proline
dehydrogenase and P5CDH catalyze the two-step oxidation
of proline to glutamate. P5CDH catalyzes the oxidation
of glutamate semialdehyde, utilizing NAD+ as the
electron acceptor. In some bacteria, the two enzymes are
fused into the bifunctional flavoenzyme, proline
utilization A (PutA). These enzymes play important roles
in cellular redox control, superoxide generation, and
apoptosis. In certain prokaryotes such as Escherichia
coli, PutA is also a transcriptional repressor of the
proline utilization genes. Monofunctional enzyme
sequences such as those seen in the Bacillus RocA P5CDH
are also present in this subfamily as well as the human
ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Length = 500
Score = 178 bits (454), Expect = 7e-49
Identities = 122/465 (26%), Positives = 211/465 (45%), Gaps = 65/465 (13%)
Query: 253 LFINGEFVNSVGGSSMECINPANES-TICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
L I GE+V++ M ++P S + + A+ + + A AA AF W
Sbjct: 21 LVIGGEWVDT--KERMVSVSPFAPSEVVGTTAKADKAEAEAALEAAWAAF-KTWKDWPQE 77
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
DR L+ K ADL+ + + EL + + G + A+ V +ID +Y+A ++
Sbjct: 78 DRARLLLKAADLLRRRRRELIATLTYEVGKNWVEAIDD-VAEAIDFIRYYARAALRLRYP 136
Query: 372 TIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSP 431
+ + N +F +G +I+PWN+P+ + + + +A GNTV+ KP+E +
Sbjct: 137 AVEVVPYPGEDNESFYV--GLGAGVVISPWNFPVAIFTGMIVAPVAVGNTVIAKPAEDAV 194
Query: 432 LTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
+ K+ E+ AGFP GV+ LPG G G +++H +IR + FTGS TG KI ++AA
Sbjct: 195 VVGYKVFEIFHEAGFPPGVVQFLPGVGEEVGAYLTEHERIRGINFTGSLETGKKIYEAAA 254
Query: 492 E-----SNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSN 546
+ K++ +E GGK+ +++ + + + V + F +G+ C +A R+ +
Sbjct: 255 RLAPGQTWFKRLYVETGGKNAIIVDETADFELVVEGVVVSAFGFQGQKCSAASRLILTQG 314
Query: 547 IYDAFLEKVVTEVKKM------NHKAHLDKLID---------YCEKAKSEGARLLIGGKR 591
Y+ LE+++ +++ + L +ID Y E K+EG +L++GGKR
Sbjct: 315 AYEPVLERLLKRAERLSVGPPEENGTDLGPVIDAEQEAKVLSYIEHGKNEG-QLVLGGKR 373
Query: 592 LDRPG-----------------------------------DVDAVIKRANSTEYGLASGI 616
L+ G D ++ ANST YGL G+
Sbjct: 374 LEGEGYFVAPTVVEEVPPKARIAQEEIFGPVLSVIRYKDDDFAEALEVANSTPYGLTGGV 433
Query: 617 FTSDINKAMYFVDKIDSGTVFINTYNKTDVAA--PFGGFKQSGFG 659
++ + G ++IN + PFGGFK SG
Sbjct: 434 YSRKREHLEEARREFHVGNLYINRKITGALVGVQPFGGFKLSGTN 478
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 176 bits (448), Expect = 2e-48
Identities = 95/329 (28%), Positives = 147/329 (44%), Gaps = 67/329 (20%)
Query: 385 TFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRA 444
+ EP+GV +I PWNYPL + + +AAGNTVV+KPSE++P T+ LA+L +
Sbjct: 94 AYVIPEPLGVVLIIGPWNYPLQLALAPLIGAIAAGNTVVLKPSELAPATSALLAKL-IPK 152
Query: 445 GFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGG 504
F + ++ G V +++ + FTGS G +M++AA+ +L V+LELGG
Sbjct: 153 YFDPEAVAVVEGGVEVATALLAE--PFDHIFFTGSPAVGKIVMEAAAK-HLTPVTLELGG 209
Query: 505 KSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVK---- 560
KSP ++ D NL+ A R G F N G+ CI+ + V +I D +E++ +K
Sbjct: 210 KSPCIVDKDANLEVAARRIAWGKFLNAGQTCIAPDYVLVHESIKDELIEELKKAIKEFYG 269
Query: 561 ----------KMNHKAHLDKLIDYCEKAKSEGARLLIGGKR----------------LDR 594
++ ++ H D+L + K ++IGG+ D
Sbjct: 270 EDPKESPDYGRIINERHFDRLASLLDDGK-----VVIGGQVDKEERYIAPTILDDVSPDS 324
Query: 595 P----------------GDVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFI 638
P D+D I+ NS LA +F+ D + + SG V +
Sbjct: 325 PLMQEEIFGPILPILTYDDLDEAIEFINSRPKPLALYLFSEDKAVQERVLAETSSGGVCV 384
Query: 639 NTYNKTDV-------AAPFGGFKQSGFGK 660
N DV PFGG SG G
Sbjct: 385 N-----DVLLHAAIPNLPFGGVGNSGMGA 408
>gnl|CDD|184426 PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase;
Provisional.
Length = 462
Score = 173 bits (440), Expect = 3e-47
Identities = 119/444 (26%), Positives = 187/444 (42%), Gaps = 64/444 (14%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
+NPA + + A +DD++ A A F +W + R + + + EE
Sbjct: 12 VNPATGEQLSVLPWAGADDIENALQLAAAGFR-DWRETNIDYRAQKLRDIGKALRARSEE 70
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARP----NSNFTF 386
+A + + + G A + V S A CD + A P N
Sbjct: 71 MAQMITREMGKPINQA-RAEVAKS-------ANLCDWYAEHGPAMLKAEPTLVENQQAVI 122
Query: 387 TKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGF 446
R P+G I PWN+PL + P L AGN ++K + A +A++ AG
Sbjct: 123 EYR-PLGTILAIMPWNFPLWQVMRGAVPILLAGNGYLLKHAPNVMGCAQLIAQVFKDAGI 181
Query: 447 PKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKS 506
P+GV L + I+ +I V TGS G I A + LKK LELGG
Sbjct: 182 PQGVYGWLNADNDGVSQMINDS-RIAAVTVTGSVRAGAAIGAQAGAA-LKKCVLELGGSD 239
Query: 507 PLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKMNHKA 566
P ++ +D +L+ AV+ ++ G + N G+ C +A R ++ I AF E+ V +
Sbjct: 240 PFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIIEEGIASAFTERFVAAAAALKMGD 299
Query: 567 HL---------------DKLIDYCEKAKSEGARLLIGGKRLDRPG--------------- 596
D+L E +EGARLL+GG+++ G
Sbjct: 300 PRDEENALGPMARFDLRDELHHQVEATLAEGARLLLGGEKIAGAGNYYAPTVLANVTPEM 359
Query: 597 ------------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFI 638
D + ++ AN +E+GL++ IFT+D +A +++ G VFI
Sbjct: 360 TAFREELFGPVAAITVAKDAEHALELANDSEFGLSATIFTTDETQARQMAARLECGGVFI 419
Query: 639 NTYNKTDVAAPFGGFKQSGFGKDL 662
N Y +D FGG K+SGFG++L
Sbjct: 420 NGYCASDARVAFGGVKKSGFGREL 443
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 172 bits (438), Expect = 8e-47
Identities = 115/463 (24%), Positives = 195/463 (42%), Gaps = 65/463 (14%)
Query: 252 QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
+I G+F G+ + NPA V A+ D+VD A +A + F W + S
Sbjct: 2 NHWIGGKFAEGASGTYIPVTNPATNEVTTKVAFASVDEVDAAVASARETFLT-WGQTSLA 60
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
R ++ + L++++++E+A + + + G ++ A V ++ ++ G + G
Sbjct: 61 QRTSVLLRYQALLKEHRDEIAELITAEHGKTHSDA-LGDVARGLEVVEHACGVNSLLKGE 119
Query: 372 TIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSP 431
T R + ++ R+P+GVC ITP+N+P M+ W +A GNT V+KPSE P
Sbjct: 120 TSTQVATRVD---VYSIRQPLGVCAGITPFNFPAMIPLWMFPIAIACGNTFVLKPSEKVP 176
Query: 432 LTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
A+KLAEL AG P GV+N++ G + + +H ++ V F GST G I + +
Sbjct: 177 SAAVKLAELFSEAGAPDGVLNVVHG-DKEAVDRLLEHPDVKAVSFVGSTPIGRYIHTTGS 235
Query: 492 ESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAF 551
K+V G K+ +V+ D + D A +G + G+ C+ A V D +
Sbjct: 236 AHG-KRVQALGGAKNHMVVMPDADKDAAADALVGAAYGAAGQRCM-AISAAVLVGAADEW 293
Query: 552 LEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG 596
+ ++ +K+ D++ +EGA +L+ G+ G
Sbjct: 294 VPEIRERAEKIRIGPGDDPGAEMGPLITPQAKDRVASLIAGGAAEGAEVLLDGRGYKVDG 353
Query: 597 -------------------------------------DVDAVIKRANSTEYGLASGIFTS 619
++ I N++ YG + IFT
Sbjct: 354 YEEGNWVGPTLLERVPPTMKAYQEEIFGPVLCVLEADTLEEAIALINASPYGNGTAIFTR 413
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAP---FGGFKQSGFG 659
D A F +I+ G V +N V P F G+K S FG
Sbjct: 414 DGAAARRFQHEIEVGQVGVNV--PIPVPLPYFSFTGWKDSFFG 454
>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with
similarity to Tortula ruralis aldehyde dehydrogenase
ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus
RL0313) with sequence similarity to the moss Tortula
ruralis aldehyde dehydrogenase ALDH21A1 (RNP123)
believed to play an important role in the detoxification
of aldehydes generated in response to desiccation- and
salinity-stress, and similar sequences are included in
this CD.
Length = 455
Score = 170 bits (432), Expect = 4e-46
Identities = 124/445 (27%), Positives = 204/445 (45%), Gaps = 62/445 (13%)
Query: 268 MECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQN 327
+E +NP + I V + +D A A F + L A +R ++ +LADLME+
Sbjct: 1 LEVVNPFDLKPIGEVPTVDWAAIDKALDTAHALFLDRNNWLPAHERIAILERLADLMEER 60
Query: 328 KEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKIL----GSTIPIAHARPNSN 383
+ELA + + + G A K V +ID + L G IP+ ++
Sbjct: 61 ADELALLIAREGGKPLVDA-KVEVTRAIDGVE----LAADELGQLGGREIPMGLTPASAG 115
Query: 384 -FTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSV 442
FT REPIGV I+ +N+PL ++ ++AP +AAG V++KP+ +PL+ L +L
Sbjct: 116 RIAFTTREPIGVVVAISAFNHPLNLIVHQVAPAIAAGCPVIVKPALATPLSCLAFVDLLH 175
Query: 443 RAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLEL 502
AG P+G +P E + ++ F GS G + A + +LE
Sbjct: 176 EAGLPEGWCQAVP-CENAVAEKLVTDPRVAFFSFIGSARVGWMLRSKLAPGT--RCALEH 232
Query: 503 GGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVV------ 556
GG +P+++ +LD + + G F++ G+ C+S R+FV + I D F +++
Sbjct: 233 GGAAPVIVDRSADLDAMIPPLVKGGFYHAGQVCVSVQRVFVPAEIADDFAQRLAAAAEKL 292
Query: 557 ---------TEVKKMNHKAHLDKLIDYCEKAKSEGARLLIGGKRL-----------DRPG 596
TEV + +D++ ++ +A + GARLL GGKRL D P
Sbjct: 293 VVGDPTDPDTEVGPLIRPREVDRVEEWVNEAVAAGARLLCGGKRLSDTTYAPTVLLDPPR 352
Query: 597 D--------------------VDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTV 636
D +D I +ANS + +FT D++ A+ V ++D+ V
Sbjct: 353 DAKVSTQEIFGPVVCVYSYDDLDEAIAQANSLPVAFQAAVFTKDLDVALKAVRRLDATAV 412
Query: 637 FIN--TYNKTDVAAPFGGFKQSGFG 659
+N T + D PF G +QSG+G
Sbjct: 413 MVNDHTAFRVD-WMPFAGRRQSGYG 436
>gnl|CDD|215110 PLN00412, PLN00412, NADP-dependent glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 496
Score = 164 bits (418), Expect = 7e-44
Identities = 132/460 (28%), Positives = 209/460 (45%), Gaps = 65/460 (14%)
Query: 254 FINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDR 313
+ +GE+ S G S+ NP+ T VQ ++V+ A+ + KA + W++ R
Sbjct: 19 YADGEWRTSSSGKSVAITNPSTRKTQYKVQACTQEEVN-KAMESAKAAQKAWAKTPLWKR 77
Query: 314 GHLMFKLADLMEQNKEELATIESLDSGAVYTLA-----LKTHVGMSIDTWKYFAGWCDKI 368
L+ K A +++++K +A E L V +A T V S D Y A +I
Sbjct: 78 AELLHKAAAILKEHKAPIA--ECL----VKEIAKPAKDAVTEVVRSGDLISYTAEEGVRI 131
Query: 369 LGS-TIPIAHARPN---SNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVM 424
LG ++ + P + + T + P+GV I P+NYP+ + K+AP L AGN VV+
Sbjct: 132 LGEGKFLVSDSFPGNERNKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNAVVL 191
Query: 425 KPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGM 484
KP + AL + AGFPKG+I+ + G G+ G+ ++ H + + FTG TG+
Sbjct: 192 KPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGD-TGI 250
Query: 485 KIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVD 544
I K A L+ +ELGGK ++ +D +LD A + G F G+ C + + V
Sbjct: 251 AISKKAGMVPLQ---MELGGKDACIVLEDADLDLAAANIIKGGFSYSGQRCTAVKVVLVM 307
Query: 545 SNIYDAFLEKVVTEVKKMN--------------HKAHLDKLIDYCEKAKSEGARLLIGGK 590
++ DA +EKV +V K+ ++ + + AK +GA K
Sbjct: 308 ESVADALVEKVNAKVAKLTVGPPEDDCDITPVVSESSANFIEGLVMDAKEKGATFCQEWK 367
Query: 591 R---------LD---------------------RPGDVDAVIKRANSTEYGLASGIFTSD 620
R LD R V+ I N++ +GL +FT D
Sbjct: 368 REGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTRD 427
Query: 621 INKAMYFVDKIDSGTVFINTY-NKTDVAAPFGGFKQSGFG 659
INKA+ D +++GTV IN+ + PF G K SG G
Sbjct: 428 INKAILISDAMETGTVQINSAPARGPDHFPFQGLKDSGIG 467
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 162 bits (413), Expect = 1e-43
Identities = 99/333 (29%), Positives = 153/333 (45%), Gaps = 78/333 (23%)
Query: 390 EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKG 449
EP GVC +I+PWNYP + + +AAGNT ++KPSE++P T+ +A++ +R F +
Sbjct: 99 EPKGVCLIISPWNYPFNLAFGPLVSAIAAGNTAILKPSELTPHTSAVIAKI-IREAFDED 157
Query: 450 VINILPGTGAVTGEAISQ---HLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKS 506
+ + G V + H + FTGS G +M +AA+ +L V+LELGGKS
Sbjct: 158 EVAVFEGDAEVAQALLELPFDH-----IFFTGSPAVGKIVMAAAAK-HLASVTLELGGKS 211
Query: 507 PLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKMN--- 563
P ++ + +L KA + G F N G+ CI+ +FV ++ DAF+E + E++K
Sbjct: 212 PTIVDETADLKKAAKKIAWGKFLNAGQTCIAPDYVFVHESVKDAFVEHLKAEIEKFYGKD 271
Query: 564 -------------HKAHLDKLIDYCEKAKSEGARLLIGGK-----RLDRPG--------- 596
+ H D+L + A ++GA++ GG+ R P
Sbjct: 272 AARKASPDLARIVNDRHFDRLKGLLDDAVAKGAKVEFGGQFDAAQRYIAPTVLTNVTPDM 331
Query: 597 ------------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKI----DSG 634
D+D VI+ N+ LA +F+ D KA V+K+ SG
Sbjct: 332 KIMQEEIFGPVLPIITYEDLDEVIEYINAKPKPLALYVFSKD--KA--NVNKVLARTSSG 387
Query: 635 TVFINTYNKTDVAA-------PFGGFKQSGFGK 660
V +N DV PFGG SG G
Sbjct: 388 GVVVN-----DVVLHFLNPNLPFGGVNNSGIGS 415
>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like.
Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of
Pseudomonas sp. strain HR199 (CalB) which catalyzes the
NAD+-dependent oxidation of coniferyl aldehyde to
ferulic acid, and similar sequences, are present in this
CD.
Length = 434
Score = 161 bits (409), Expect = 4e-43
Identities = 98/329 (29%), Positives = 139/329 (42%), Gaps = 72/329 (21%)
Query: 390 EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKG 449
+P+GV G+I PWNYPL + + LAAGN V++KPSE +P T+ LAEL + F +
Sbjct: 100 QPLGVVGIIVPWNYPLYLALGPLIAALAAGNRVMIKPSEFTPRTSALLAEL-LAEYFDED 158
Query: 450 VINILPGTGAVTGEAISQ----HLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGK 505
+ ++ G GA A S HL FTGST G +M++AAE NL V+LELGGK
Sbjct: 159 EVAVVTG-GADVAAAFSSLPFDHLL-----FTGSTAVGRHVMRAAAE-NLTPVTLELGGK 211
Query: 506 SPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM--- 562
SP +I D +L KA G N G+ C++ + V + + F+ V KM
Sbjct: 212 SPAIIAPDADLAKAAERIAFGKLLNAGQTCVAPDYVLVPEDKLEEFVAAAKAAVAKMYPT 271
Query: 563 --NHK--------AHLDKLIDYCEKAKSEGARLL-IGGKRLDRPG--------------- 596
++ H +L E A+++GAR++ + D
Sbjct: 272 LADNPDYTSIINERHYARLQGLLEDARAKGARVIELNPAGEDFAATRKLPPTLVLNVTDD 331
Query: 597 -------------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVF 637
+D I N+ LA F D + + + SG V
Sbjct: 332 MRVMQEEIFGPILPILTYDSLDEAIDYINARPRPLALYYFGEDKAEQDRVLRRTHSGGVT 391
Query: 638 INTYNKTDVA-------APFGGFKQSGFG 659
IN D PFGG SG G
Sbjct: 392 IN-----DTLLHVAQDDLPFGGVGASGMG 415
>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
dehydrogenase family 14 and related proteins. Aldehyde
dehydrogenase family 14 (ALDH14), isolated mainly from
the mitochondrial outer membrane of Saccharomyces
cerevisiae (YMR110C) and most closely related to the
plant and animal ALDHs and fatty ALDHs family 3 members,
and similar fungal sequences, are present in this CD.
Length = 436
Score = 154 bits (391), Expect = 1e-40
Identities = 98/323 (30%), Positives = 155/323 (47%), Gaps = 55/323 (17%)
Query: 385 TFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRA 444
++EP+GV +I PWNYP+++ + +AAG TVV+KPSE++P TA LAEL V
Sbjct: 102 PRIRKEPLGVVLIIGPWNYPVLLALSPLVGAIAAGCTVVLKPSELTPHTAALLAEL-VPK 160
Query: 445 GFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGG 504
++ G T + Q K+ +TGS G I ++AA+ +L V+LELGG
Sbjct: 161 YLDPDAFQVVQGGVPETTALLEQKFD--KIFYTGSGRVGRIIAEAAAK-HLTPVTLELGG 217
Query: 505 KSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLE---KVV----- 556
KSP+++ + +L+ A + + G F N G+ C++ + VD ++YD F+E KV+
Sbjct: 218 KSPVIVTKNADLELAAKRILWGKFGNAGQICVAPDYVLVDPSVYDEFVEELKKVLDEFYP 277
Query: 557 ------TEVKKMNHKAHLDKLIDYCEKAKSEGARLLIGGKR------------LDRPGD- 597
+ ++ + H ++L + K + ++IGG+ D D
Sbjct: 278 GGANASPDYTRIVNPRHFNRLKSLLDTTKGK---VVIGGEMDEATRFIPPTIVSDVSWDD 334
Query: 598 -------------------VDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFI 638
+D IK NS + LA IFT D ++ + + + SG V I
Sbjct: 335 SLMSEELFGPVLPIIKVDDLDEAIKVINSRDTPLALYIFTDDKSEIDHILTRTRSGGVVI 394
Query: 639 N-TYNKTDV-AAPFGGFKQSGFG 659
N T V APFGG SG+G
Sbjct: 395 NDTLIHVGVDNAPFGGVGDSGYG 417
>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase
ywdH-like. Uncharacterized Bacillus subtilis ywdH
aldehyde dehydrogenase (locus P39616) most closely
related to the ALDHs and fatty ALDHs of families 3 and
14, and similar sequences, are included in this CD.
Length = 449
Score = 150 bits (381), Expect = 4e-39
Identities = 89/331 (26%), Positives = 144/331 (43%), Gaps = 75/331 (22%)
Query: 386 FTKREPIGVCGLITPWNYPLMMLSWKMAP---CLAAGNTVVMKPSEVSPLTALKLAELSV 442
+ EP GV +I PWNYP + +AP +AAGNT V+KPSE++P T+ +A++ +
Sbjct: 95 YIYYEPYGVVLIIAPWNYPFQLA---LAPLIGAIAAGNTAVLKPSELTPNTSKVIAKI-I 150
Query: 443 RAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLEL 502
F + + ++ G E + Q K + FTGS G +M++AA+ +L V+LEL
Sbjct: 151 EETFDEEYVAVVEGGVEENQELLDQ--KFDYIFFTGSVRVGKIVMEAAAK-HLTPVTLEL 207
Query: 503 GGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM 562
GGKSP ++ +D NL A + + G F N G+ C++ + V ++ + F++++ E+KK
Sbjct: 208 GGKSPCIVDEDANLKLAAKRIVWGKFLNAGQTCVAPDYVLVHESVKEKFIKELKEEIKKF 267
Query: 563 N--------------HKAHLDKLIDYCEKAKSEGARLLIGGKR-----------LDRPGD 597
++ H D+L + K ++ GG LD
Sbjct: 268 YGEDPLESPDYGRIINEKHFDRLAGLLDNGK-----IVFGGNTDRETLYIEPTILDNVTW 322
Query: 598 VDAV---------------------IKRANSTEYGLASGIFTSDINKAMYFVDKIDSG-- 634
D V I+ S LA +F+ D ++ + G
Sbjct: 323 DDPVMQEEIFGPILPVLTYDTLDEAIEIIKSRPKPLALYLFSEDKKVEKKVLENLSFGGG 382
Query: 635 ----TV--FINTYNKTDVAAPFGGFKQSGFG 659
T+ N Y PFGG SG G
Sbjct: 383 CINDTIMHLANPY------LPFGGVGNSGMG 407
>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase
[acylating].
Length = 604
Score = 146 bits (369), Expect = 6e-37
Identities = 128/479 (26%), Positives = 204/479 (42%), Gaps = 76/479 (15%)
Query: 244 KMDVSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEG 303
+M PN I G FV S S ++ INPA + + V + +++ A AA++AF
Sbjct: 109 QMPPRVPN--LIGGSFVESQSSSFIDVINPATQEVVSKVPLTTNEEFKAAVSAAKQAFP- 165
Query: 304 EWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVG---MSIDTWKY 360
W R +M K +L+ +N ++LA + + G LK G ++ ++
Sbjct: 166 LWRNTPITTRQRVMLKFQELIRKNMDKLAMNITTEQGK----TLKDSHGDIFRGLEVVEH 221
Query: 361 FAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGN 420
G +G +P N T++ REP+GVC I P+N+P M+ W + GN
Sbjct: 222 ACGMATLQMGEYLPNV---SNGVDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGN 278
Query: 421 TVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGST 480
T ++KPSE P ++ LAEL++ AG P GV+NI+ GT T AI IR V F GS
Sbjct: 279 TFILKPSEKDPGASVILAELAMEAGLPDGVLNIVHGTND-TVNAICDDEDIRAVSFVGSN 337
Query: 481 VTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGR 540
GM I AA K++ +G K+ ++ D N+D + + F G+ C++
Sbjct: 338 TAGMHIYARAAAKG-KRIQSNMGAKNHGLVLPDANIDATLNALLAAGFGAAGQRCMALST 396
Query: 541 -IFV-DSNIYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGA 583
+FV D+ ++ +K+V K + K +++ + +GA
Sbjct: 397 VVFVGDAKSWE---DKLVERAKALKVTCGSEPDADLGPVISKQAKERICRLIQSGVDDGA 453
Query: 584 RLLIGGKRLDRPG-------------------------------------DVDAVIKRAN 606
+LL+ G+ + PG D I N
Sbjct: 454 KLLLDGRDIVVPGYEKGNFIGPTILSGVTPDMECYKEEIFGPVLVCMQANSFDEAISIIN 513
Query: 607 STEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGF--KQSGFGKDLD 663
+YG + IFTS A F I++G + IN V PF F ++ F DL+
Sbjct: 514 KNKYGNGAAIFTSSGAAARKFQMDIEAGQIGINV--PIPVPLPFFSFTGNKASFAGDLN 570
>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase
[Energy production and conversion].
Length = 769
Score = 147 bits (373), Expect = 7e-37
Identities = 119/455 (26%), Positives = 196/455 (43%), Gaps = 81/455 (17%)
Query: 264 GGSSMECINPAN-ESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLAD 322
GG INPA+ + + +V A DV+ A AA A WS +R ++ + AD
Sbjct: 125 GGEPRPVINPADPDDIVGTVTEATEADVEQALEAAVAAAP-IWSATPPAERAAILERAAD 183
Query: 323 LMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNS 382
LME +L + ++G + A+ V ++D +Y+AG
Sbjct: 184 LMEAQMPQLMGLLVREAGKTLSNAI-AEVREAVDFLRYYAGQA------------RDTFG 230
Query: 383 NFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSV 442
N T P+ VC I+PWN+PL + + ++A LAAGN+V+ KP+E +PL A + L
Sbjct: 231 NLTHRPLGPV-VC--ISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQAVRLLH 287
Query: 443 RAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSL-- 500
AG P GV+ +LPG G G A++ ++ V FTGST I + A+ + + L
Sbjct: 288 EAGVPPGVLQLLPGRGETVGAALTADARVAGVMFTGSTEVARLIQRQLAKRQGRPIPLIA 347
Query: 501 ELGGKSPLVIFDDYNL-DKAVRMSMGGVFFNKGENCISAGRI-FVDSNIYDAFLE--KVV 556
E GG++ + I D L ++ V + F + G+ C SA R+ + ++ D L K
Sbjct: 348 ETGGQNAM-IVDSSALAEQVVADVLASAFDSAGQRC-SALRVLCLQEDVADRILTMLKGA 405
Query: 557 TEVKKMNHKAHL-------------DKLIDYCEKAKSEGARL------------------ 585
++ + L + + + +S+G +
Sbjct: 406 MAELRVGNPDRLTTDVGPVIDAEAKANIEKHIQTMRSKGRLVHQAAAPNSLQKGTFVAPT 465
Query: 586 LIGGKRLD----------------RPGDVDAVIKRANSTEYGLASGIFTSDINKAMYFVD 629
LI + LD + ++D VI + N+T YGL G+ T + +
Sbjct: 466 LIELENLDELQREVFGPVLHVVRYKRDELDEVIDQINATGYGLTLGVHTRIDETIAHVTE 525
Query: 630 KIDSGTVFINTYNKTDVAA-----PFGGFKQSGFG 659
+ +G +++ N+ V A PFGG SG G
Sbjct: 526 RAHAGNLYV---NRNIVGAVVGVQPFGGEGLSGTG 557
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 148 bits (376), Expect = 8e-37
Identities = 120/462 (25%), Positives = 201/462 (43%), Gaps = 91/462 (19%)
Query: 262 SVGGSSMECINPANES-TICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKL 320
V G + +NPA+ + +V A+++DV+ A AA+ AF EWS A +R ++ +
Sbjct: 563 DVDGGTRPVLNPADHDDVVGTVTEASAEDVERALAAAQAAFP-EWSATPAAERAAILERA 621
Query: 321 ADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARP 380
ADLME + EL + ++G A+ V ++D +Y+A A AR
Sbjct: 622 ADLMEAHMPELFALAVREAGKTLANAI-AEVREAVDFLRYYA-------------AQAR- 666
Query: 381 NSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAEL 440
+P+G I+PWN+PL + + ++A L AGNTV+ KP+E +PL A + L
Sbjct: 667 -RLLNGPGHKPLGPVVCISPWNFPLAIFTGQIAAALVAGNTVLAKPAEQTPLIAARAVRL 725
Query: 441 SVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSL 500
AG PK + +LPG G G A+ +I V FTGST I ++ A+ + V L
Sbjct: 726 LHEAGVPKDALQLLPGDGRTVGAALVADPRIAGVMFTGSTEVARLIQRTLAKRSGPPVPL 785
Query: 501 --ELGGKSPLVIFDDYNL-DKAVRMSMGGVFFNKGENCISAGRI-FVDSNIYDAFLE--- 553
E GG++ + I D L ++ V + F + G+ C SA R+ + ++ D L
Sbjct: 786 IAETGGQNAM-IVDSSALPEQVVADVIASAFDSAGQRC-SALRVLCLQEDVADRVLTMLK 843
Query: 554 ------------KVVTEVKKMNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRP------ 595
++ T+V + + + E ++ G + +L P
Sbjct: 844 GAMDELRIGDPWRLSTDVGPVIDAEAQANIEAHIEAMRAAGRLV----HQLPLPAETEKG 899
Query: 596 --------------------------------GDVDAVIKRANSTEYGLASGIFTSDINK 623
++D VI N+T YGL G+ + I++
Sbjct: 900 TFVAPTLIEIDSISDLEREVFGPVLHVVRFKADELDRVIDDINATGYGLTFGLHSR-IDE 958
Query: 624 AM-YFVDKIDSGTVFINTYNKTDVAA-----PFGGFKQSGFG 659
+ + +I +G +++ N+ + A PFGG SG G
Sbjct: 959 TIAHVTSRIRAGNIYV---NRNIIGAVVGVQPFGGEGLSGTG 997
>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein;
Provisional.
Length = 493
Score = 144 bits (364), Expect = 9e-37
Identities = 96/332 (28%), Positives = 147/332 (44%), Gaps = 57/332 (17%)
Query: 377 HARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALK 436
P ++ EP+GV +I WNYPL + +A +AAGNTVV+KPSE+SP T+
Sbjct: 97 VFGPGK--SYIIPEPLGVVLVIGAWNYPLNLTLIPLAGAIAAGNTVVLKPSELSPHTSKL 154
Query: 437 LAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLK 496
+A+L + + ++ G VT E + + + FTGS G +M++AAE NL
Sbjct: 155 MAKL-LTKYLDPSYVRVIEGGVEVTTELLKEPFDH--IFFTGSPRVGKLVMQAAAE-NLT 210
Query: 497 KVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVV 556
+LELGGKSP+++ NL A R G F N G+ C++ + V +I D F+E +
Sbjct: 211 PCTLELGGKSPVIVDKSCNLKVAARRIAWGKFLNAGQTCVAPDYVLVHRSIKDKFIEALK 270
Query: 557 TEVKKMN--------------HKAHLDKLIDYCEKAKSEGARLLIGGK------------ 590
+K+ ++ H +L E K G +++ GG+
Sbjct: 271 EAIKEFFGEDPKKSEDYSRIVNEFHTKRLA---ELIKDHGGKVVYGGEVDIENKYVAPTI 327
Query: 591 ----RLDRP----------------GDVDAVIKRANSTEYGLASGIFTSDINKAMYFVDK 630
LD P ++D V++ NS LA F D ++
Sbjct: 328 IVNPDLDSPLMQEEIFGPILPILTYENIDEVLEFINSRPKPLALYYFGEDKRHKELVLEN 387
Query: 631 IDSGTVFIN--TYNKTDVAAPFGGFKQSGFGK 660
SG V IN ++ + PFGG SG G
Sbjct: 388 TSSGAVVINDCVFHLLNPNLPFGGVGNSGMGA 419
>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate
dehydrogenase (PutA C-terminal domain). This model
represents one of several related branches of
delta-1-pyrroline-5-carboxylate dehydrogenase. Members
of this branch are the C-terminal domain of the PutA
bifunctional proline dehydrogenase /
delta-1-pyrroline-5-carboxylate dehydrogenase [Energy
metabolism, Amino acids and amines].
Length = 500
Score = 143 bits (363), Expect = 1e-36
Identities = 119/455 (26%), Positives = 192/455 (42%), Gaps = 81/455 (17%)
Query: 265 GSSMECINPANESTIC-SVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADL 323
G + NPA+ I V AN V A +A++AF W+ A++R + +LADL
Sbjct: 50 GEAQPVTNPADRRDIVGQVFHANLAHVQAAIDSAQQAFP-TWNATPAKERAAKLDRLADL 108
Query: 324 MEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSN 383
+E + EL + ++G A+ V ++D +Y+A +LG
Sbjct: 109 LELHMPELMALCVREAGKTIHNAI-AEVREAVDFCRYYAKQVRDVLG------------E 155
Query: 384 FTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVR 443
F+ E GV I+PWN+PL + + +++ LAAGNTV+ KP+E + L A + EL
Sbjct: 156 FS---VESRGVFVCISPWNFPLAIFTGQISAALAAGNTVIAKPAEQTSLIAYRAVELMQE 212
Query: 444 AGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSL--E 501
AGFP G I +LPG GA G A++ +I V FTGST I ++ A+ V L E
Sbjct: 213 AGFPAGTIQLLPGRGADVGAALTSDPRIAGVAFTGSTEVAQLINQTLAQREDAPVPLIAE 272
Query: 502 LGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRI-FVDSNIYDAFLE------- 553
GG++ +++ ++ VR + F + G+ C SA R+ V ++ D L
Sbjct: 273 TGGQNAMIVDSTALPEQVVRDVLRSAFDSAGQRC-SALRVLCVQEDVADRVLTMIQGAMQ 331
Query: 554 ---------------KVVTEVKKMNHKAHLDKLIDYCEK---AKSEGAR----------L 585
V+ K N AH++ + +K + +R
Sbjct: 332 ELKVGVPHLLTTDVGPVIDAEAKQNLLAHIEHMSQTQKKIAQLTLDDSRACQHGTFVAPT 391
Query: 586 LIGGKRLD----------------RPGDVDAVIKRANSTEYGLASGIFTSDINKAMYFVD 629
L + + ++D ++ + N T YGL G+ + +
Sbjct: 392 LFELDDIAELSEEVFGPVLHVVRYKARELDQIVDQINQTGYGLTMGVHSRIETTYRWIEK 451
Query: 630 KIDSGTVFINTYNKTDVAA-----PFGGFKQSGFG 659
G ++ N+ V A PFGG SG G
Sbjct: 452 HARVGNCYV---NRNQVGAVVGVQPFGGQGLSGTG 483
>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member.
Length = 508
Score = 143 bits (362), Expect = 2e-36
Identities = 118/462 (25%), Positives = 204/462 (44%), Gaps = 63/462 (13%)
Query: 254 FINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDR 313
++ GE+ G + +NPAN I V A+ +D + A E+A + W ++ A R
Sbjct: 24 YVGGEW--RANGPLVSSVNPANNQPIAEVVEASLEDYEEGLRACEEAAK-IWMQVPAPKR 80
Query: 314 GHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTI 373
G ++ ++ D + + L + SL+ G + + V ID + G ++ GS I
Sbjct: 81 GEIVRQIGDALRAKLDYLGRLVSLEMGKILAEGIG-EVQEIIDMCDFAVGLSRQLNGSII 139
Query: 374 PIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLT 433
P RPN + P+G+ G+IT +N+P +L W L GN VV K + +PL
Sbjct: 140 P--SERPN-HMMMEVWNPLGIVGVITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLI 196
Query: 434 ALKL----AELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKS 489
+ + AE+ + P + G GA GEAI++ +I V FTGS+ G+ +++
Sbjct: 197 TIAMTKLVAEVLEKNNLPGAIFTSFCG-GAEIGEAIAKDTRIPLVSFTGSSKVGL-MVQQ 254
Query: 490 AAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYD 549
+ K LEL G + +++ DD ++ AVR + G+ C + R+ + +IYD
Sbjct: 255 TVNARFGKCLLELSGNNAIIVMDDADIQLAVRSVLFAAVGTAGQRCTTCRRLLLHESIYD 314
Query: 550 AFLEKVVTEVKKMNHKAHLDK---------------LIDYCEKAKSEGARLLIGGKRLDR 594
LE+++T K++ L+K E KS+G ++L GG ++
Sbjct: 315 DVLEQLLTVYKQVKIGDPLEKGTLLGPLHTPESKKNFEKGIEIIKSQGGKILTGGSAIES 374
Query: 595 PGD--------------------------------VDAVIKRANSTEYGLASGIFTSDIN 622
G+ ++ I+ NS GL+S IFT +
Sbjct: 375 EGNFVQPTIVEISPDADVVKEELFGPVLYVMKFKTLEEAIEINNSVPQGLSSSIFTRNPE 434
Query: 623 KAMYFVDKI--DSGTVFINT-YNKTDVAAPFGGFKQSGFGKD 661
++ + D G V +N N ++ FGG K +G G++
Sbjct: 435 TIFKWIGPLGSDCGIVNVNIPTNGAEIGGAFGGEKATGGGRE 476
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 141 bits (359), Expect = 8e-35
Identities = 138/487 (28%), Positives = 211/487 (43%), Gaps = 101/487 (20%)
Query: 248 SFPNQLFINGEFVNSVGGSSMECINPAN-ESTICSVQMANSDDVDIAALAAEKAFEGEWS 306
+F + + G +N G + ++PA+ + V A+++ V+ A AA AF WS
Sbjct: 545 AFLEKQWQAGPIING-EGEARPVVSPADRRRVVGEVAFADAEQVEQALAAARAAFPA-WS 602
Query: 307 RLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWK------- 359
R +R ++ + ADL+E N+ EL + ++G KT + +I +
Sbjct: 603 RTPVEERAAILERAADLLEANRAELIALCVREAG-------KT-LQDAIAEVREAVDFCR 654
Query: 360 YFAGWCDKILGSTIPIAHARP----NSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPC 415
Y+A ++ G+ + P SN GV I+PWN+PL + ++A
Sbjct: 655 YYAAQARRLFGAPEKL----PGPTGESNELR--LHGRGVFVCISPWNFPLAIFLGQVAAA 708
Query: 416 LAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVG 475
LAAGNTV+ KP+E +PL A + +L AG PK V+ +LPG GA G A++ +I V
Sbjct: 709 LAAGNTVIAKPAEQTPLIAAEAVKLLHEAGIPKDVLQLLPGDGATVGAALTADPRIAGVA 768
Query: 476 FTGSTVTGMKIMKSAAESNLKKVSL--ELGGKSPLVIFDDYNL-----DKAVRMSMGGVF 528
FTGST T I ++ A + V L E GG++ + I D L D V + F
Sbjct: 769 FTGSTETARIINRTLAARDGPIVPLIAETGGQNAM-IVDSTALPEQVVDDVVTSA----F 823
Query: 529 FNKGENCISAGRI-FVDSNIYDAFLE---------------KVVTEVKKMNHKAHLDKLI 572
+ G+ C SA R+ FV +I D +E + T+V + L
Sbjct: 824 RSAGQRC-SALRVLFVQEDIADRVIEMLKGAMAELKVGDPRLLSTDVGPVIDAEAKANLD 882
Query: 573 DYCEKAKSEGARLL---------------------IGG-KRLDR-------------PGD 597
+ E+ K E ARLL I +L+R D
Sbjct: 883 AHIERMKRE-ARLLAQLPLPAGTENGHFVAPTAFEIDSISQLEREVFGPILHVIRYKASD 941
Query: 598 VDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAA-----PFGG 652
+D VI N+T YGL GI + A D++ G V++ N+ + A PFGG
Sbjct: 942 LDKVIDAINATGYGLTLGIHSRIEETADRIADRVRVGNVYV---NRNQIGAVVGVQPFGG 998
Query: 653 FKQSGFG 659
SG G
Sbjct: 999 QGLSGTG 1005
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 126 bits (318), Expect = 5e-31
Identities = 96/336 (28%), Positives = 142/336 (42%), Gaps = 83/336 (24%)
Query: 386 FTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAG 445
+ +EP+GV +I WNYPL + + +AAGN VV+KPSEVSP TA LAEL
Sbjct: 95 YIYKEPLGVVLIIGAWNYPLQLTLVPLVGAIAAGNCVVIKPSEVSPATAKLLAELI---- 150
Query: 446 FPK-------GVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKV 498
PK V+ G T E + Q + + +TGST G +M++AA+ +L V
Sbjct: 151 -PKYLDKECYPVVL---GGVEETTELLKQ--RFDYIFYTGSTSVGKIVMQAAAK-HLTPV 203
Query: 499 SLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTE 558
+LELGGKSP + ++D A R G F N G+ CI+ + + + F+E +
Sbjct: 204 TLELGGKSPCYVDKSCDIDVAARRIAWGKFINAGQTCIAPDYVLCTPEVQEKFVEALKKT 263
Query: 559 VKKM---------------NHKAHLDKLIDYCEKAKSEGARLLIGGK--RLDR------- 594
+K+ N + H +L G ++ IGG+ +R
Sbjct: 264 LKEFYGEDPKESPDYGRIINDR-HFQRLKKLL-----SGGKVAIGGQTDEKERYIAPTVL 317
Query: 595 ----PGD-------------------VDAVIKRANSTEYGLASGIFTSDINKAMYFVDKI 631
P D +D I+ NS E LA +F+++ +
Sbjct: 318 TDVKPSDPVMQEEIFGPILPIVTVNNLDEAIEFINSREKPLALYVFSNNKKVINKILSNT 377
Query: 632 DSGTVFINTYNKTDV-------AAPFGGFKQSGFGK 660
SG V +N D + PFGG SG G
Sbjct: 378 SSGGVCVN-----DTIMHYTLDSLPFGGVGNSGMGA 408
>gnl|CDD|143455 cd07137, ALDH_F3FHI, Plant aldehyde dehydrogenase family 3 members
F1, H1, and I1 and related proteins. Aldehyde
dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1,
ALDH3H1, and ALDH3I1), and similar plant sequences, are
in this CD. In Arabidopsis thaliana, stress-regulated
expression of ALDH3I1 was observed in leaves and
osmotic stress expression of ALDH3H1 was observed in
root tissue, whereas, ALDH3F1 expression was not stress
responsive. Functional analysis of ALDH3I1 suggest it
may be involved in a detoxification pathway in plants
that limits aldehyde accumulation and oxidative stress.
Length = 432
Score = 115 bits (290), Expect = 2e-27
Identities = 92/322 (28%), Positives = 145/322 (45%), Gaps = 60/322 (18%)
Query: 390 EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKG 449
EP+GV +I+ WN+P ++ + +AAGN VV+KPSE++P T+ LA+L +
Sbjct: 100 EPLGVVLVISAWNFPFLLSLEPVIGAIAAGNAVVLKPSELAPATSALLAKL-IPEYLDTK 158
Query: 450 VINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLV 509
I ++ G G A+ + K K+ FTGS G IM +AA+ +L V+LELGGK P++
Sbjct: 159 AIKVIEG-GVPETTALLEQ-KWDKIFFTGSPRVGRIIMAAAAK-HLTPVTLELGGKCPVI 215
Query: 510 IFDDYNLDKAVRMSMGGVF-FNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM------ 562
+ +L AVR GG + N G+ CI+ + V+ + ++ + ++K
Sbjct: 216 VDSTVDLKVAVRRIAGGKWGCNNGQACIAPDYVLVEESFAPTLIDALKNTLEKFFGENPK 275
Query: 563 --------NHKAHLDKLIDYCEKAKSEGARLLIGGKR------------LDRPGD----- 597
+ H +L S +++ GG+R LD P D
Sbjct: 276 ESKDLSRIVNSHHFQRLSRLL-DDPSVADKIVHGGERDEKNLYIEPTILLDPPLDSSIMT 334
Query: 598 ---------------VDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYN 642
++ I+ NS LA+ +FT + V + SG V T+N
Sbjct: 335 EEIFGPLLPIITVKKIEESIEIINSRPKPLAAYVFTKNKELKRRIVAETSSGGV---TFN 391
Query: 643 KTDV-----AAPFGGFKQSGFG 659
T V PFGG +SGFG
Sbjct: 392 DTVVQYAIDTLPFGGVGESGFG 413
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 114 bits (288), Expect = 8e-27
Identities = 109/482 (22%), Positives = 195/482 (40%), Gaps = 97/482 (20%)
Query: 253 LFINGEFVNSVGGSSMECINPANES-TICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
L I G+ V + G++ + + P + + + + A++ V+ A AA +A EW+R+
Sbjct: 35 LVIGGKEVRT--GNTGKQVMPHDHAHVLATYHYADAALVEKAIEAALEA-RKEWARMPFE 91
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMS--------------IDT 357
DR + K ADL+ Y L T +G ID
Sbjct: 92 DRAAIFLKAADLLSGKYR-------------YELNAATMLGQGKNVWQAEIDAACELIDF 138
Query: 358 WKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLA 417
++ + +++ P++ N R G ++P+N+ + + AP L
Sbjct: 139 LRFNVKYAEELYAQQ-PLSSPAGVWNRL-EYRPLEGFVYAVSPFNFTAIGGNLAGAPALM 196
Query: 418 AGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFT 477
GN V+ KPS+ + L+ + ++ AG P GVIN +PG G V G+ + + + FT
Sbjct: 197 -GNVVLWKPSDTAVLSNYLVYKILEEAGLPPGVINFVPGDGPVVGDTVLASPHLAGLHFT 255
Query: 478 GSTVTGMKIMKSAAES-----NLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKG 532
GST T + K E+ ++ E GGK+ ++ ++D V ++ G F +G
Sbjct: 256 GSTPTFKSLWKQIGENLDRYRTYPRIVGETGGKNFHLVHPSADVDSLVTATVRGAFEYQG 315
Query: 533 ENCISAGRIFVDSNIYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEK 577
+ C +A R +V +++ E+++ E+K++ + D++ Y +
Sbjct: 316 QKCSAASRAYVPESLWPEVKERLLEELKEIKMGDPDDFSNFMGAVIDEKAFDRIKGYIDH 375
Query: 578 AKSE-GARLLIGGKRLDRPG-----------------------------------DVDAV 601
AKS+ A ++ GGK D G D +
Sbjct: 376 AKSDPEAEIIAGGKCDDSVGYFVEPTVIETTDPKHKLMTEEIFGPVLTVYVYPDSDFEET 435
Query: 602 IKRANST-EYGLASGIFTSD---INKAMYFVDKIDSGTVFINTYNKTDVAA--PFGGFKQ 655
++ ++T Y L IF D I +A + +G +IN V PFGG +
Sbjct: 436 LELVDTTSPYALTGAIFAQDRKAIREATD-ALRNAAGNFYINDKPTGAVVGQQPFGGARA 494
Query: 656 SG 657
SG
Sbjct: 495 SG 496
>gnl|CDD|187731 cd08703, FDH_Hydrolase_C, The C-terminal subdomain of the hydrolase
domain on the bi-functional protein
10-formyltetrahydrofolate dehydrogenase. The family
represents the C-terminal subdomain of the hydrolase
domain on the bi-functional protein,
10-formyltetrahydrofolate dehydrogenase (FDH). FDH
catalyzes the conversion of 10-formyltetrahydrofolate, a
precursor for nucleotide biosynthesis, to
tetrahydrofolate. The protein comprises two functional
domains: the N-terminal hydrolase domain that removes a
formyl group from 10-formyltetrahydrofolate and the
C-terminal NADP-dependent dehydrogenase domain that
reduces the formyl group to carbon dioxide. The
hydrolase domain contains an N-terminal formyl
transferase catalytic core subdomain and this C-terminal
subdomain, which may be involved in substrate binding.
Length = 100
Score = 101 bits (253), Expect = 9e-26
Identities = 46/127 (36%), Positives = 60/127 (47%), Gaps = 32/127 (25%)
Query: 12 VIKFNLKGEEIHNFIRGLDSSPGASTVLNGIEVKVFASSMWEDANIEGTPVTVEGSDTPA 71
I ++ E +HNFIRG D PGA ++G +V +F SS+W+ G V VEG + P
Sbjct: 5 KINWDQTAEALHNFIRGNDKVPGAWATIDGEQVTLFGSSLWKGGKPPGGEVEVEGLERPG 64
Query: 72 ILHPDGLLFTGSDGQKVRNNNQNVDGQYLILRSLVLMNVTRFLFDMKVNVKRLLV-DNKM 130
I+H +GLL TGSDG+ VNVKRL D KM
Sbjct: 65 IVHKNGLLITGSDGK-------------------------------MVNVKRLQFEDGKM 93
Query: 131 IHACNFG 137
I A +G
Sbjct: 94 IPASKYG 100
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 107 bits (268), Expect = 2e-24
Identities = 114/479 (23%), Positives = 191/479 (39%), Gaps = 90/479 (18%)
Query: 253 LFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEG--EWSRLSA 310
L I GE V + G + ++P N + + N+ + A E A + EWS L
Sbjct: 34 LVIGGEEVWT-SGERIYQVSPHNHQAVLAK-ATNATEELANK-AVEAALDAKKEWSLLPF 90
Query: 311 RDRGHLMFKLADLME-QNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKIL 369
DR + K ADL+ + E+ L A V ID +++ A + ++
Sbjct: 91 YDRAAIFLKAADLLSGPYRAEILAATMLGQSKTVYQAEIDAVAELIDFFRFNAKYARELY 150
Query: 370 GSTIPI--------AHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNT 421
PI RP F + I+P+N+ + + AP L GNT
Sbjct: 151 EQQ-PISAPGEWNRTEYRPLEGFVYA----------ISPFNFTAIAGNLAGAPALM-GNT 198
Query: 422 VVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTV 481
V+ KPS+ + L+ + + AG P GVIN +PG G + + + + + FTGST
Sbjct: 199 VIWKPSDTAMLSNYLVMRILEEAGLPPGVINFVPGDGPLVSDTVLADPDLAGIHFTGSTP 258
Query: 482 TGMKIMKSAAES-----NLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCI 536
T + K A++ N ++ E GGK V+ +++ V ++ G F +G+ C
Sbjct: 259 TFKHLWKQVAQNLDRYHNFPRIVGETGGKDFHVVHPSADVEHVVSGTIRGAFEYQGQKCS 318
Query: 537 SAGRIFVDSNIYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSE 581
+ R++V +++ F +++ E+ ++ + K++ Y E AKS+
Sbjct: 319 ACSRLYVPHSLWPRFKGRLLAELSRVKVGDPDDFGTFMGAVIDEKSFAKIVKYIEHAKSD 378
Query: 582 GARLLI--GGKRLDRPG-----------DVDAVIKRA----------------------- 605
+ L I GGK D G D + +
Sbjct: 379 PSALTILAGGKYDDSVGYFVEPTVVESKDPQEPLMKEEIFGPVLTVYVYPDDKYKEILDL 438
Query: 606 --NSTEYGLASGIFTSDINKAMYFVDKI---DSGTVFINTYNKTDVAA--PFGGFKQSG 657
++T YGL +F D A+ DK+ +G +IN V PFGG + SG
Sbjct: 439 VDSTTSYGLTGAVFAKD-RDAILEADKVLRFAAGNFYINDKPTGAVVGQQPFGGARASG 496
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 105 bits (265), Expect = 3e-23
Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 24/220 (10%)
Query: 265 GSSMECINPANESTICS-VQMANSDDVDIAALAAEKAFEGE-WSRLSARDRGHLMFKLAD 322
G INPA+ I V+ A +V+ A +A A W +R ++ + AD
Sbjct: 658 GEMSPVINPADPRDIVGYVREATPAEVEQALESAVNA--APIWFATPPAERAAILERAAD 715
Query: 323 LMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNS 382
LME + L + ++G ++ A+ V ++D +Y+AG R +
Sbjct: 716 LMEAQMQTLMGLLVREAGKTFSNAI-AEVREAVDFLRYYAG-------------QVRDD- 760
Query: 383 NFTFTKREPIG--VCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAEL 440
F P+G VC I+PWN+PL + + ++A LAAGN+V+ KP+E +PL A + +
Sbjct: 761 -FDNDTHRPLGPVVC--ISPWNFPLAIFTGQVAAALAAGNSVLAKPAEQTPLIAAQAVRI 817
Query: 441 SVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGST 480
+ AG P GV+ +LPG G G A+ ++R V FTGST
Sbjct: 818 LLEAGVPAGVVQLLPGRGETVGAALVADARVRGVMFTGST 857
>gnl|CDD|165847 PLN02203, PLN02203, aldehyde dehydrogenase.
Length = 484
Score = 96.7 bits (241), Expect = 5e-21
Identities = 90/327 (27%), Positives = 142/327 (43%), Gaps = 65/327 (19%)
Query: 390 EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKG 449
EP+GV + + WN+P+ + + +AAGN VV+KPSE++P T+ LA ++
Sbjct: 107 EPLGVVLIFSSWNFPIGLSLEPLIGAIAAGNAVVLKPSELAPATSAFLAA-NIPKYLDSK 165
Query: 450 VINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLV 509
+ ++ G G GE + QH K K+ FTGS G IM +AA +L V+LELGGK P
Sbjct: 166 AVKVIEG-GPAVGEQLLQH-KWDKIFFTGSPRVGRIIM-TAAAKHLTPVALELGGKCP-C 221
Query: 510 IFD----DYNLDKAVRMSMGGVFFN-KGENCISAGRIFVDSNIYDAFLEKVVTEVKKMN- 563
I D + AV +GG + + G+ CI+ + V+ +E + + +KK
Sbjct: 222 IVDSLSSSRDTKVAVNRIVGGKWGSCAGQACIAIDYVLVEERFAPILIELLKSTIKKFFG 281
Query: 564 -------------HKAHLDKLIDYCEKAKSEGARLLIGGKR------------LDRPGDV 598
+K H +L + + A ++ GG L+ P D
Sbjct: 282 ENPRESKSMARILNKKHFQRLSNLLKD-PRVAASIVHGGSIDEKKLFIEPTILLNPPLDS 340
Query: 599 DAV--------------------IKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFI 638
D + I NS LA FT++ + + SG+V
Sbjct: 341 DIMTEEIFGPLLPIITVKKIEDSIAFINSKPKPLAIYAFTNNEKLKRRILSETSSGSV-- 398
Query: 639 NTYNKTDV-----AAPFGGFKQSGFGK 660
T+N + + PFGG +SGFG+
Sbjct: 399 -TFNDAIIQYACDSLPFGGVGESGFGR 424
>gnl|CDD|177831 PLN02174, PLN02174, aldehyde dehydrogenase family 3 member H1.
Length = 484
Score = 96.3 bits (239), Expect = 7e-21
Identities = 96/327 (29%), Positives = 147/327 (44%), Gaps = 70/327 (21%)
Query: 390 EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKG 449
EP+GV +I+ WNYP ++ + ++AGN VV+KPSE++P ++ LA+L +
Sbjct: 111 EPLGVVLVISAWNYPFLLSIDPVIGAISAGNAVVLKPSELAPASSALLAKL-LEQYLDSS 169
Query: 450 VINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLV 509
+ ++ G T + Q K K+ +TGS+ G IM +AA+ +L V LELGGKSP+V
Sbjct: 170 AVRVVEGAVTETTALLEQ--KWDKIFYTGSSKIGRVIMAAAAK-HLTPVVLELGGKSPVV 226
Query: 510 IFDDYNLDKAVRMSMGGVF-FNKGENCISAGRIFVDS----NIYDA-------FLEKVVT 557
+ D +L VR + G + N G+ CIS I + DA F K
Sbjct: 227 VDSDTDLKVTVRRIIAGKWGCNNGQACISPDYILTTKEYAPKVIDAMKKELETFYGKNPM 286
Query: 558 EVKKM------NHKAHLDKLIDYCEKAKSEGARLLIGGKR------------LDRP---- 595
E K M H L KL+D EK S+ +++ GG++ LD P
Sbjct: 287 ESKDMSRIVNSTHFDRLSKLLD--EKEVSD--KIVYGGEKDRENLKIAPTILLDVPLDSL 342
Query: 596 -------GDVDAVIKRANSTEY---------GLASGIFTSDINKAMYFVDKIDSGTVFIN 639
G + ++ N E LA+ +FT + F + +G + +N
Sbjct: 343 IMSEEIFGPLLPILTLNNLEESFDVIRSRPKPLAAYLFTHNKKLKERFAATVSAGGIVVN 402
Query: 640 TYNKTDVAA-------PFGGFKQSGFG 659
D+A PFGG +SG G
Sbjct: 403 -----DIAVHLALHTLPFGGVGESGMG 424
>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent
alpha-ketoglutaric semialdehyde dehydrogenases and plant
delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH
family 12-like. ALDH subfamily which includes the
NAD(P)+-dependent, alpha-ketoglutaric semialdehyde
dehydrogenases (KGSADH, EC 1.2.1.26); plant
delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of
the MaoC (monoamine oxidase C) dehydratase regulatory
protein; and orthologs of MaoC, PaaZ and PaaN, which are
putative ring-opening enzymes of the aerobic
phenylacetic acid catabolic pathway.
Length = 442
Score = 90.8 bits (225), Expect = 3e-19
Identities = 60/281 (21%), Positives = 109/281 (38%), Gaps = 33/281 (11%)
Query: 293 AALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVG 352
A LAA+ + + RL+ R + ++ + ++A L +G + A +
Sbjct: 4 ALLAADISTKA-ARRLALPKRADFLARIIQRLAAKSYDIAAGAVLVTGKGWMFAEN--IC 60
Query: 353 MSIDTWKYFAGWCDKILGSTIPIAHA---RPNSNFTFTKRE---PIGVCGLITPWNYPLM 406
+ A + + I H P G +I +N+PL
Sbjct: 61 GDQVQLRARAF-----VIYSYRIPHEPGNHLGQGLKQQSHGYRWPYGPVLVIGAFNFPLW 115
Query: 407 MLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAG-FPKGVINILPGTGAVTGEAI 465
+ ++A LA GN V++KP + + L AG P + ++ G G T +A+
Sbjct: 116 IPLLQLAGALAMGNPVIVKPHTAVSIVMQIMVRLLHYAGLLPPEDVTLINGDGK-TMQAL 174
Query: 466 SQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDD-----YNLDKAV 520
H + V FTGS+ K+ A ++ ++ LEL G + V+ D Y + V
Sbjct: 175 LLHPNPKMVLFTGSSRVAEKLALDAKQA---RIYLELAGFNWKVLGPDAQAVDYVAWQCV 231
Query: 521 R-MSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVK 560
+ M+ G+ C + +FV N +V ++K
Sbjct: 232 QDMTAC-----SGQKCTAQSMLFVPENWS---KTPLVEKLK 264
>gnl|CDD|143447 cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde
Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA)
Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the
NAD(P)+-dependent conversion of KGSA to
alpha-ketoglutarate. This CD contains such sequences as
those seen in Azospirillum brasilense, KGSADH-II
(D-glucarate/D-galactarate-inducible) and KGSADH-III
(hydroxy-L-proline-inducible). Both show similar high
substrate specificity for KGSA and different coenzyme
specificity; KGSADH-II is NAD+-dependent and KGSADH-III
is NADP+-dependent. Also included in this CD is the
NADP(+)-dependent aldehyde dehydrogenase from Vibrio
harveyi which catalyzes the oxidation of long-chain
aliphatic aldehydes to acids.
Length = 454
Score = 83.4 bits (207), Expect = 7e-17
Identities = 77/300 (25%), Positives = 114/300 (38%), Gaps = 42/300 (14%)
Query: 290 VDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKT 349
VD AA AA AFE + LS R + +AD +E +EL ++G A
Sbjct: 1 VDAAAAAAAAAFE-SYRALSPARRAAFLEAIADEIEALGDELVARAHAETG--LPEARLQ 57
Query: 350 -HVGMSIDTWKYFA------GWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWN 402
+G + + FA W D + P P + P+G + N
Sbjct: 58 GELGRTTGQLRLFADLVREGSWLDARIDPADPDRQPLPRPDLRRMLV-PLGPVAVFGASN 116
Query: 403 YPLM--MLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRA----GFPKGVINILPG 456
+PL + A LAAG VV+K P T+ +A A G P GV ++L G
Sbjct: 117 FPLAFSVAGGDTASALAAGCPVVVKAHPAHPGTSELVARAIRAALRATGLPAGVFSLLQG 176
Query: 457 TGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNL-KKVSLELGGKSPLVIF---- 511
G G A+ +H I+ VGFTGS G + +AA ELG +P+ I
Sbjct: 177 GGREVGVALVKHPAIKAVGFTGSRRGGRALFDAAAARPEPIPFYAELGSVNPVFILPGAL 236
Query: 512 --------DDYNLDKAVRMSMG-GVFFNKGENCISAGRIFV-DSNIYDAFLEKVVTEVKK 561
+ +++G G F C + G + V DAF+ + +
Sbjct: 237 AERGEAIAQGF----VGSLTLGAGQF------CTNPGLVLVPAGPAGDAFIAALAEALAA 286
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification.
This group includes families ALDH18, ALDH19, and ALDH20
and represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 71.9 bits (176), Expect = 3e-13
Identities = 73/348 (20%), Positives = 125/348 (35%), Gaps = 21/348 (6%)
Query: 320 LADLMEQNKEELATIESLDSGA-VYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHA 378
+A+ + ++ LA+ + GA + +L M K D G T + H
Sbjct: 25 IANALYDTRQRLASEAVSERGAYIRSLIANWIAMMGCSESK-LYKNIDTERGITASVGHI 83
Query: 379 ----RPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTA 434
P++ T+ + PIGV I P PL ++ +A N + +P +P T
Sbjct: 84 QDVLLPDNGETYVRAFPIGVTMHILPSTNPLSGIT-SALRGIATRNQCIFRPHPSAPFTN 142
Query: 435 LKLAEL---SVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
LA L + A PK ++ +P E + H KI + TG +K +
Sbjct: 143 RALALLFQAADAAHGPKILVLYVPHPSDELAEELLSHPKIDLIVATGGRDAVDAAVKHSP 202
Query: 492 ESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAF 551
+ G SP+V+ + + ++A FF+ C S ++V ++ D
Sbjct: 203 HIPVIGFG---AGNSPVVVDETADEERASGSVHDSKFFD-QNACASEQNLYVVDDVLDPL 258
Query: 552 LEKVVTEVKKMNHKAHLDKLIDYCEKAKSEG-------ARLLIGGKRLDRPGDVDAVIKR 604
E+ ++ K + E S L + LD V+
Sbjct: 259 YEEFKLKLVVEGLKVPQETKPLSKETTPSFDDEALESMTPLECQFRVLDVISAVENAWMI 318
Query: 605 ANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGG 652
S ++T INK FV ID+ + + N +K A G
Sbjct: 319 IESGGGPHTRCVYTHKINKVDDFVQYIDTASFYPNESSKKGRGAFAGK 366
>gnl|CDD|237016 PRK11903, PRK11903, aldehyde dehydrogenase; Provisional.
Length = 521
Score = 63.2 bits (154), Expect = 2e-10
Identities = 73/334 (21%), Positives = 129/334 (38%), Gaps = 43/334 (12%)
Query: 254 FINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIA-ALAAEKAFEGEWSR-LSAR 311
++ G + G+ +P + V ++ +D+A A A + G R L+
Sbjct: 8 YVAGRWQAG-SGAGTPLFDPVTGEELVRV---SATGLDLAAAFAFAREQGGAALRALTYA 63
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSID----TWKYFAGWCDK 367
R L+ + +++ N++ I + +SG + + ID T Y+A
Sbjct: 64 QRAALLAAIVKVLQANRDAYYDIATANSGTT-----RNDSAVDIDGGIFTLGYYAKL--- 115
Query: 368 ILGSTIPIAHARPNSNFTFTKREPI-----------GVCGLITPWNYPLMMLSWKMAPCL 416
G+ + A + ++P GV I +N+P L K AP L
Sbjct: 116 --GAALGDARLLRDGEAVQLGKDPAFQGQHVLVPTRGVALFINAFNFPAWGLWEKAAPAL 173
Query: 417 AAGNTVVMKPSEVSPLTALKLAELSVRAG-FPKGVINILPGTGAVTGEAISQHLKIRKV- 474
AG V++KP+ + ++ + V AG P G ++++ G+ A + HL+ V
Sbjct: 174 LAGVPVIVKPATATAWLTQRMVKDVVAAGILPAGALSVVCGSSA----GLLDHLQPFDVV 229
Query: 475 GFTGSTVTGMKIMKSAA------ESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVF 528
FTGS T + A N++ SL P D V+ + +
Sbjct: 230 SFTGSAETAAVLRSHPAVVQRSVRVNVEADSLNSALLGPDAAPGSEAFDLFVKEVVREMT 289
Query: 529 FNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM 562
G+ C + RIFV +YDA E + + K
Sbjct: 290 VKSGQKCTAIRRIFVPEALYDAVAEALAARLAKT 323
>gnl|CDD|217282 pfam02911, Formyl_trans_C, Formyl transferase, C-terminal domain.
Length = 100
Score = 55.0 bits (133), Expect = 2e-09
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 13 IKFNLKGEEIHNFIRGLDSSPGASTVLNGIEVKVFASSMWEDANIEGTPVTVEGSDTPAI 72
I ++ EEIH IR L PGA T LNG VK+ + + ED++ +P T+ D
Sbjct: 9 IDWSQPAEEIHRLIRALSPWPGAYTFLNGKRVKILKAEVVEDSSGAASPGTIVSVD---- 64
Query: 73 LHPDGLLFTGSDG 85
GLL DG
Sbjct: 65 --KGGLLVACGDG 75
>gnl|CDD|187732 cd08704, Met_tRNA_FMT_C, C-terminal domain of Formyltransferase
and other enzymes. C-terminal domain of formyl
transferase and other proteins with diverse enzymatic
activities. Proteins found in this family include
methionyl-tRNA formyltransferase, ArnA, and
10-formyltetrahydrofolate dehydrogenase. Methionyl-tRNA
formyltransferases constitute the majority of the
family and also demonstrate greater sequence diversity.
Although most proteins with formyltransferase activity
contain the C-terminal domain, some formyltransferases
( for example, prokaryotic glycinamide ribonucleotide
transformylase (GART)) only have the core catalytic
domain, indicating that the C-terminal domain is not a
requirement for catalytic activity and may be involved
in substrate binding. For example, the C-terminal
domain of methionyl-tRNA formyltransferase is involved
in the tRNA binding.
Length = 87
Score = 52.9 bits (128), Expect = 6e-09
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 13 IKFNLKGEEIHNFIRGLDSSPGASTVLNGIEVKVFASSMWEDANIEGTPVTVE 65
I ++ EEIHN IR L+ PGA T LNG +K+ + + E++ +
Sbjct: 5 IDWSKSAEEIHNLIRALNPWPGAYTTLNGKRLKILKAEVLEESGEAAPGTILA 57
>gnl|CDD|143400 cd07081, ALDH_F20_ACDH_EutE-like, Coenzyme A acylating aldehyde
dehydrogenase (ACDH), Ethanolamine utilization protein
EutE, and related proteins. Coenzyme A acylating
aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent
acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10),
functions as a single enzyme (such as the Ethanolamine
utilization protein, EutE, in Salmonella typhimurium) or
as part of a multifunctional enzyme to convert
acetaldehyde into acetyl-CoA. The E. coli
aldehyde-alcohol dehydrogenase includes the functional
domains, alcohol dehydrogenase (ADH), ACDH, and
pyruvate-formate-lyase deactivase; and the Entamoeba
histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1)
includes the functional domains ADH and ACDH, and may be
critical enzymes in the fermentative pathway.
Length = 439
Score = 50.7 bits (121), Expect = 2e-06
Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 10/198 (5%)
Query: 381 NSNF-TFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKP----SEVSPLTAL 435
+ N T EPIGV ITP P + +K L N+++ P +V+ A
Sbjct: 84 DENGGTLIIAEPIGVVASITPSTNPTSTVIFKSLISLKTRNSIIFSPHPRAKKVTQRAAT 143
Query: 436 KLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNL 495
L + +V AG P+ +I G ++Q L ++ G TG + AA S+
Sbjct: 144 LLLQAAVAAGAPENLI----GWIDNPSIELAQRL-MKFPGIGLLLATGGPAVVKAAYSSG 198
Query: 496 KKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKV 555
K G +P+VI + ++ +AV+ + F+ G C S + V ++YD +
Sbjct: 199 KPAIGVGAGNTPVVIDETADIKRAVQSIVKSKTFDNGVICASEQSVIVVDSVYDEVMRLF 258
Query: 556 VTEVKKMNHKAHLDKLID 573
+ L ++
Sbjct: 259 EGQGAYKLTAEELQQVQP 276
>gnl|CDD|215989 pfam00550, PP-binding, Phosphopantetheine attachment site. A
4'-phosphopantetheine prosthetic group is attached
through a serine. This prosthetic group acts as a a
'swinging arm' for the attachment of activated fatty
acid and amino-acid groups. This domain forms a four
helix bundle. This family includes members not included
in Prosite. The inclusion of these members is supported
by sequence analysis and functional evidence. The
related domain of Vibrio anguillarum angR has the
attachment serine replaced by an alanine.
Length = 66
Score = 45.2 bits (108), Expect = 2e-06
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 159 LKTIWAGILN--SEVSEDTDFFQSGAGSMDVVRLIEEIKENLQITLQNEDVLMSSVFRDF 216
L+ I A +L E+ D D F G S+ V L+ ++E + + D+ +
Sbjct: 3 LREIVAEVLGIPDEIDPDDDLFDLGLDSLLAVELLARLEEEFGVEIPPSDLFEHPTLGEL 62
>gnl|CDD|143444 cd07126, ALDH_F12_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH family 12.
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
EC=1.5.1.12), family 12: a proline catabolic enzyme of
the aldehyde dehydrogenase (ALDH) protein superfamily.
P5CDH is a mitochondrial enzyme involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. The P5CDH, ALDH12A1
gene, in Arabidopsis, has been identified as an
osmotic-stress-inducible ALDH gene. This CD contains
both Viridiplantae and Alveolata P5CDH sequences.
Length = 489
Score = 49.8 bits (119), Expect = 4e-06
Identities = 66/306 (21%), Positives = 122/306 (39%), Gaps = 47/306 (15%)
Query: 314 GHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHV---GMSIDTWKYFAGWC-DKIL 369
G + ++A + + + +E + + +A K+ G + T K+ + D++
Sbjct: 65 GDVSHRVAHELRKPE-----VEDFFARLIQRVAPKSDAQALGEVVVTRKFLENFAGDQVR 119
Query: 370 ----GSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMK 425
+P H S+ R P G +ITP+N+PL + + ++ L GN ++K
Sbjct: 120 FLARSFNVPGDHQGQQSSGY---RWPYGPVAIITPFNFPLEIPALQLMGALFMGNKPLLK 176
Query: 426 -PSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGM 484
S+VS + + L G P ++++ G + + + R FTGS+
Sbjct: 177 VDSKVS-VVMEQFLRLLHLCGMPATDVDLIHSDGPTMNKILLEA-NPRMTLFTGSS---- 230
Query: 485 KIMKSAAESNLKKVSLELGGKSPLVIFDDY-NLDKAVRMSMGGVFFNKGENCISAGRIFV 543
K+ + A KV LE G ++ D ++D + G+ C + +F
Sbjct: 231 KVAERLALELHGKVKLEDAGFDWKILGPDVSDVDYVAWQCDQDAYACSGQKCSAQSILFA 290
Query: 544 DSNIYDA-FLEKV--VTEVKKMNH--------------KAHLDKLIDYCEKAKSEGARLL 586
N A L+K+ + E +K+ H+DKL GA++L
Sbjct: 291 HENWVQAGILDKLKALAEQRKLEDLTIGPVLTWTTERILDHVDKL------LAIPGAKVL 344
Query: 587 IGGKRL 592
GGK L
Sbjct: 345 FGGKPL 350
>gnl|CDD|143445 cd07127, ALDH_PAD-PaaZ, Phenylacetic acid degradation proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida)-like.
Phenylacetic acid degradation (PAD) proteins PaaZ
(Escherichia coli) and PaaN (Pseudomonas putida) are
putative aromatic ring cleavage enzymes of the aerobic
PA catabolic pathway. PaaZ mutants were defective for
growth with PA as a sole carbon source due to
interruption of the putative ring opening system. This
CD is limited to bacterial monofunctional enzymes.
Length = 549
Score = 49.4 bits (118), Expect = 5e-06
Identities = 60/255 (23%), Positives = 95/255 (37%), Gaps = 48/255 (18%)
Query: 289 DVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALK 348
D D AA A G W AR R + ++ + E+A +G + +A +
Sbjct: 85 DPDALLAAARAAMPG-WRDAGARARAGVCLEILQRLNARSFEMAHAVMHTTGQAFMMAFQ 143
Query: 349 ---THV---GMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKR---EPIGV----- 394
H G+ + + +I + + K P GV
Sbjct: 144 AGGPHAQDRGLEAVAYAWRE--MSRIPPTAEWEKPQGKHDPLAMEKTFTVVPRGVALVIG 201
Query: 395 CGLITPWN-YPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVR--------AG 445
C WN YP + S LA GN V++KP P L LA ++V+ AG
Sbjct: 202 CSTFPTWNGYPGLFAS------LATGNPVIVKP---HPAAILPLA-ITVQVAREVLAEAG 251
Query: 446 FPKGVINILPGTGAVTGEAISQHL----KIRKVGFTGSTVTGMKIMKSAAESNLKKVSLE 501
F ++ + T E I+Q L ++R + FTGS G + +A + +V E
Sbjct: 252 FDPNLVTLAADT---PEEPIAQTLATRPEVRIIDFTGSNAFGDWLEANARQ---AQVYTE 305
Query: 502 LGGKSPLVI--FDDY 514
G + +V+ DD
Sbjct: 306 KAGVNTVVVDSTDDL 320
>gnl|CDD|143439 cd07121, ALDH_EutE, Ethanolamine utilization protein EutE-like.
Coenzyme A acylating aldehyde dehydrogenase (ACDH), an
NAD+ and CoA-dependent acetaldehyde dehydrogenase,
acetylating (EC=1.2.1.10), converts acetaldehyde into
acetyl-CoA. This CD is limited to such monofunctional
enzymes as the Ethanolamine utilization protein, EutE,
in Salmonella typhimurium. Mutations in eutE abolish
the ability to utilize ethanolamine as a carbon source.
Length = 429
Score = 47.2 bits (113), Expect = 2e-05
Identities = 66/274 (24%), Positives = 106/274 (38%), Gaps = 25/274 (9%)
Query: 288 DDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATI--ESLDSGAVYTL 345
VD A AA+ A + ++ + + DR ++ + + + N EELA + E G V
Sbjct: 4 ATVDDAVAAAKAAQK-QYRKCTLADREKIIEAIREALLSNAEELAEMAVEETGMGRVEDK 62
Query: 346 ALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSN-FTFTKREPIGVCGLITPWNYP 404
K H+ +K G+ A N T + P GV G ITP P
Sbjct: 63 IAKNHLAA------------EKTPGTEDLTTTAWSGDNGLTLVEYAPFGVIGAITPSTNP 110
Query: 405 LMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAEL----SVRAGFPKGVINILPGTGAV 460
+ LAAGN VV P + + EL AG P ++ +
Sbjct: 111 TETIINNSISMLAAGNAVVFNPHPGAKKVSAYAVELINKAIAEAGGPDNLVVTVEEPTIE 170
Query: 461 TGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAV 520
T + H I + TG G ++K+A S KK G P+V+ + +++KA
Sbjct: 171 TTNELMAHPDINLLVVTG----GPAVVKAALSSG-KKAIGAGAGNPPVVVDETADIEKAA 225
Query: 521 RMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEK 554
R + G F+ CI+ + ++ D +
Sbjct: 226 RDIVQGASFDNNLPCIAEKEVIAVDSVADYLIAA 259
>gnl|CDD|237956 PRK15398, PRK15398, aldehyde dehydrogenase EutE; Provisional.
Length = 465
Score = 47.6 bits (114), Expect = 2e-05
Identities = 53/218 (24%), Positives = 89/218 (40%), Gaps = 27/218 (12%)
Query: 384 FTFTKREPIGVCGLITPWNYP--------LMMLSWKMAPCLAAGNTVVMKP----SEVSP 431
T + P GV G +TP P + ML AAGN+VV P +VS
Sbjct: 122 LTLIEYAPFGVIGAVTPSTNPTETIINNAISML--------AAGNSVVFSPHPGAKKVSL 173
Query: 432 LTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
L E V AG P+ ++ + T + + +H I + TG G ++K+A
Sbjct: 174 RAIELLNEAIVAAGGPENLVVTVAEPTIETAQRLMKHPGIALLVVTG----GPAVVKAAM 229
Query: 492 ESNLKKVSLELGGKSPLVIFDDY-NLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDA 550
+S KK + G +P V+ D+ +++KA R + G F+ CI+ + V ++ D
Sbjct: 230 KSG-KKA-IGAGAGNPPVVVDETADIEKAARDIVKGASFDNNLPCIAEKEVIVVDSVADE 287
Query: 551 FLEKVVTEVKKMNHKAHLDKLIDYCEKAKSEGARLLIG 588
+ + + +KL K + +G
Sbjct: 288 LMRLMEKNGAVLLTAEQAEKLQKVVLKNGGTVNKKWVG 325
>gnl|CDD|234567 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.
Length = 309
Score = 44.7 bits (107), Expect = 9e-05
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 13 IKFNLKGEEIHNFIRGLDSSPGASTVLNGIEVKVFASSMWEDANIEGTPVTV 64
I ++ E+ N IRG + PGA T L+G +K+ + + +A+ G P T+
Sbjct: 211 IDWSKPAAELENHIRGFNPWPGAWTELDGQRLKILEAEL-VEASGSGAPGTI 261
>gnl|CDD|131341 TIGR02288, PaaN_2, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has a
domain which is a member of the pfam00171 family. This
family includes sequences from Burkholderia, Bordetella,
Streptomyces. Other PaaN enzymes are represented by a
separate model, TIGR02278.
Length = 551
Score = 45.3 bits (107), Expect = 9e-05
Identities = 63/257 (24%), Positives = 100/257 (38%), Gaps = 52/257 (20%)
Query: 289 DVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALK 348
D D AA A G W AR R + ++ + E+A +G + +A +
Sbjct: 85 DGDALLDAAHAALPG-WRDAGARARAGVCLEILQRLNARSFEIAHAVMHTTGQAFMMAFQ 143
Query: 349 T---HV---GMSIDTWKY--------FAGWCDKILGSTIPIAHARPNSNFTFTKREPIGV 394
H G+ + Y A W +K G P+ + FT R G+
Sbjct: 144 AGGPHAQDRGLEAVAYAYREMSRIPETAVW-EKPQGKNDPLKLKK---RFTIVPR---GI 196
Query: 395 -----CGLITPWN-YPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVR----- 443
C WN YP + S LA GN V++KP P L LA L+V+
Sbjct: 197 ALVIGCSTFPTWNTYPGLFAS------LATGNPVLVKPH---PGAILPLA-LTVQVAREV 246
Query: 444 ---AGFPKGVINILPGT-GAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVS 499
AGF ++ + G + ++ +R + FTGS G + ++A ++ +V
Sbjct: 247 LGEAGFDPNLVTLAAFDPGHEAAQRLATDPAVRIIDFTGSNAFGQWLEQNARQA---QVY 303
Query: 500 LELGGKSPLVI--FDDY 514
E G + ++I DDY
Sbjct: 304 TEKAGVNTVIIESTDDY 320
>gnl|CDD|223301 COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation,
ribosomal structure and biogenesis].
Length = 307
Score = 43.8 bits (104), Expect = 2e-04
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 13 IKFNLKGEEIHNFIRGLDSSPGASTVLNGIEVKVFASSMWEDANIEGTPVTV 64
I ++ +I N IR + PGA T L G +K++ + + + G P +
Sbjct: 212 IDWSKPAAQILNKIRAFNPWPGAWTELGGKRIKIWEARV-LEGASNGKPGEI 262
>gnl|CDD|131331 TIGR02278, PaaN-DH, phenylacetic acid degradation protein paaN.
This enzyme is proposed to act in the ring-opening step
of phenylacetic acid degradation which follows ligation
of the acid with coenzyme A (by PaaF) and hydroxylation
by a multicomponent non-heme iron hydroxylase complex
(PaaGHIJK). Gene symbols have been standardized in. This
enzyme is related to aldehyde dehydrogenases and has
domains which are members of the pfam00171 and pfam01575
families. This family includes paaN genes from
Pseudomonas, Sinorhizobium, Rhodopseudomonas,
Escherichia, Deinococcus and Corynebacterium. Another
homology family (TIGR02288) includes several other
species.
Length = 663
Score = 43.7 bits (103), Expect = 3e-04
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 12/178 (6%)
Query: 393 GVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGF-PKGVI 451
GV I +N+P+ L K AP AG + KP+ + A L V +G P+G +
Sbjct: 146 GVAVQINAFNFPVWGLLEKFAPAFLAGVPTLAKPATPTAYVAEALVRTMVESGLLPEGSL 205
Query: 452 NILPGTGAVTGEAISQHLKIRK-VGFTGSTVTGMK------IMKSAAESNLKKVSLELGG 504
++ G+ G+ + HL R V FTGS T + +++ N + SL
Sbjct: 206 QLICGS---AGDLLD-HLDHRDVVAFTGSAATADRLRAHPNVLERGIRFNAEADSLNAAI 261
Query: 505 KSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM 562
D+ D + + + G+ C + R+ V + +A L+ + + K+
Sbjct: 262 LGEDATPDEPEFDLFAQEIVRELTIKAGQKCTAIRRVIVPKALLEAVLKALQARLAKV 319
>gnl|CDD|143446 cd07128, ALDH_MaoC-N, N-terminal domain of the monoamine oxidase C
dehydratase. The N-terminal domain of the MaoC
dehydratase, a monoamine oxidase regulatory protein.
Orthologs of MaoC include PaaZ (Escherichia coli) and
PaaN (Pseudomonas putida), which are putative
ring-opening enzymes of the aerobic phenylacetic acid
(PA) catabolic pathway. The C-terminal domain of MaoC
has sequence similarity to enoyl-CoA hydratase. Also
included in this CD is a novel Burkholderia xenovorans
LB400 ALDH of the aerobic benzoate oxidation (box)
pathway. This pathway involves first the synthesis of a
CoA thio-esterified aromatic acid, with subsequent
dihydroxylation and cleavage steps, yielding the CoA
thio-esterified aliphatic aldehyde,
3,4-dehydroadipyl-CoA semialdehyde, which is further
converted into its corresponding CoA acid by the
Burkholderia LB400 ALDH.
Length = 513
Score = 43.4 bits (103), Expect = 3e-04
Identities = 61/256 (23%), Positives = 107/256 (41%), Gaps = 41/256 (16%)
Query: 252 QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIA-ALAAEKAFEGEWSR-LS 309
Q ++ G++ G + + V +S+ +D A A+A + G R L+
Sbjct: 2 QSYVAGQWHAGTGDGR-TLHDAVTGEVVARV---SSEGLDFAAAVAYAREKGGPALRALT 57
Query: 310 ARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKIL 369
+R ++ LA + + KE+L + S +GA + + I T +A L
Sbjct: 58 FHERAAMLKALAKYLMERKEDLYAL-SAATGATRRDS-WIDIDGGIGTLFAYAS-----L 110
Query: 370 GSTIPIAHARPNSNF-------------TFTKRE---PI-GVCGLITPWNYPLMMLSWKM 412
G PN++F TF + P GV I +N+P+ + K
Sbjct: 111 GRREL-----PNAHFLVEGDVEPLSKDGTFVGQHILTPRRGVAVHINAFNFPVWGMLEKF 165
Query: 413 APCLAAGNTVVMKPSEVSPLTALKLAELSVRAG-FPKGVINILPGTGAVTGEAISQHLKI 471
AP L AG V++KP+ + + + V +G P+G + ++ G+ G+ + HL
Sbjct: 166 APALLAGVPVIVKPATATAYLTEAVVKDIVESGLLPEGALQLICGS---VGD-LLDHLGE 221
Query: 472 RK-VGFTGSTVTGMKI 486
+ V FTGS T K+
Sbjct: 222 QDVVAFTGSAATAAKL 237
>gnl|CDD|131570 TIGR02518, EutH_ACDH, acetaldehyde dehydrogenase (acetylating).
Length = 488
Score = 43.3 bits (102), Expect = 4e-04
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 13/176 (7%)
Query: 390 EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAEL----SVRAG 445
P+GV + P P +K + A N +V P + ++ +L + AG
Sbjct: 103 VPVGVVAGLIPSTNPTSTAIYKTLISIKARNAIVFSPHPNAKKCIIETVKLMRKAAEEAG 162
Query: 446 FPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGK 505
P+G I + T E ++ +K + TG + M AA S+ G
Sbjct: 163 APEGAIGCIT---VPTIEGTNELMKNKDTSLI--LATGGEAMVKAAYSSGTPAIGVGPGN 217
Query: 506 SPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKK 561
P I N+ KAVR + F+ G C S I V+ DA VV E+KK
Sbjct: 218 GPAYIERTANVKKAVRDIIDSKTFDNGTICASEQSIIVEECNKDA----VVEELKK 269
>gnl|CDD|187730 cd08702, Arna_FMT_C, C-terminal subdomain of the
formyltransferase domain on ArnA, which modifies lipid
A with 4-amino-4-deoxy-l-arabinose. Domain found in
ArnA with similarity to the C-terminal domain of
Formyltransferase. ArnA is a bifunctional enzyme
required for the modification of lipid A with
4-amino-4-deoxy-l-arabinose (Ara4N) that leads to
resistance to cationic antimicrobial peptides (CAMPs)
and clinical antimicrobials such as polymyxin. The
C-terminal domain of ArnA is a dehydrogenase domain
that catalyzes the oxidative decarboxylation of
UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose
(UDP-Ara4O) and the N-terminal domain is a
formyltransferase domain that catalyzes the addition of
a formyl group to UDP-4-amino-4-deoxy-L-arabinose
(UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose
(UDP-L-Ara4FN). This domain family represents the
C-terminal subdomain of the formyltransferase domain,
downstream of the N-terminal subdomain containing the
catalytic center. ArnA forms a hexameric structure (a
dimer of trimers), in which the dehydrogenase domains
are arranged at the center with the transformylase
domains on the outside of the complex.
Length = 92
Score = 37.2 bits (87), Expect = 0.003
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 13 IKFNLKGEEIHNFIRGLDSS-PGASTVLNGIEVKVFASSMWEDANIEGTPVTV 64
I + + EI+N +R + PGA T + G ++K++ + +DA G P V
Sbjct: 5 IDWRMSAREIYNLVRAVTKPYPGAFTFVGGQKIKIWKARPVDDAFYNGEPGKV 57
>gnl|CDD|143440 cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase
(ACDH), ALDH family 20-like. Coenzyme A acylating
aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and
CoA-dependent acetaldehyde dehydrogenase, functions as a
single enzyme (such as the Ethanolamine utilization
protein, EutE, in Salmonella typhimurium) or as part of
a multifunctional enzyme to convert acetaldehyde into
acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase
includes the functional domains, alcohol dehydrogenase
(ADH), ACDH, and pyruvate-formate-lyase deactivase; and
the Entamoeba histolytica aldehyde-alcohol dehydrogenase
2 (ALDH20A1) includes the functional domains ADH and
ACDH and may be critical enzymes in the fermentative
pathway.
Length = 436
Score = 39.8 bits (94), Expect = 0.005
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 11/169 (6%)
Query: 390 EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAEL----SVRAG 445
EP+GV + P P +K L N ++ P + +++ A++ +V AG
Sbjct: 94 EPVGVIAALIPSTNPTSTAIFKALIALKTRNAIIFSPHPRAKKCSIEAAKIMREAAVAAG 153
Query: 446 FPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELG-G 504
P+G+I + + E + +K V TG M AA S+ K ++ +G G
Sbjct: 154 APEGLIQWIE---EPSIELTQELMKHPDVDLI--LATGGPGMVKAAYSS-GKPAIGVGPG 207
Query: 505 KSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLE 553
P I + ++ +AV+ + F+ G C S + VD IYD
Sbjct: 208 NVPAYIDETADIKRAVKDIILSKTFDNGTICASEQSVIVDDEIYDEVRA 256
>gnl|CDD|232983 TIGR00460, fmt, methionyl-tRNA formyltransferase. The top-scoring
characterized proteins other than methionyl-tRNA
formyltransferase (fmt) itself are
formyltetrahydrofolate dehydrogenases. The mitochondrial
methionyl-tRNA formyltransferases are so divergent that,
in a multiple alignment of bacterial fmt, mitochondrial
fmt, and formyltetrahydrofolate dehydrogenases, the
mitochondrial fmt appears the most different. However,
because both bacterial and mitochondrial fmt are
included in the seed alignment, all credible fmt
sequences score higher than any non-fmt sequence. This
enzyme modifies Met on initiator tRNA to f-Met [Protein
synthesis, tRNA aminoacylation].
Length = 313
Score = 36.6 bits (85), Expect = 0.034
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 13 IKFNLKGEEIHNFIRGLDSSPGASTVLNGIEVKVFASSMWEDANIEGTPVTVEGSDTPAI 72
I +N EE+ N IR L+ P A G +K+ + + + + + P + + I
Sbjct: 211 IDWNQSAEELLNKIRALNPWPTAWLTFEGKNIKIHKAKVIDLSTYKAKPGEIVYHNKKGI 270
Query: 73 LHPDGLLFTGSDG 85
L+ G DG
Sbjct: 271 -----LVACGKDG 278
>gnl|CDD|223093 COG0014, ProA, Gamma-glutamyl phosphate reductase [Amino acid
transport and metabolism].
Length = 417
Score = 35.2 bits (82), Expect = 0.11
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 30/144 (20%)
Query: 515 NLDKAVRMSMGGVFFNKGEN--------CISAGRIFVDSNIYDAFLEKVVTEVKKMNHKA 566
+LDKA+++ N C +A + V I +FL K+ +++ +
Sbjct: 237 DLDKALKII---------VNAKTQRPSVCNAAETLLVHRAIAKSFLPKLANALQEAGVEL 287
Query: 567 HLDK-----LIDYCEKAKSEGAR-----LLIGGKRLDRPGDVDAVIKRANSTEYGLASGI 616
D L D + A E L++ K +D +D I N+ G + I
Sbjct: 288 RGDAEALALLPDAVKPATEEDWDTEYLDLILAVKVVD---SLDEAIAHINTYGSGHSDAI 344
Query: 617 FTSDINKAMYFVDKIDSGTVFINT 640
T D A FV+++DS V++N
Sbjct: 345 ITEDYANAERFVNEVDSAAVYVNA 368
>gnl|CDD|236931 PRK11563, PRK11563, bifunctional aldehyde dehydrogenase/enoyl-CoA
hydratase; Provisional.
Length = 675
Score = 34.1 bits (79), Expect = 0.28
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 393 GVCGLITPWNYPLM-MLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVI 451
GV I +N+P+ ML K+AP AG ++KP+ TA L E VR G
Sbjct: 150 GVAVHINAFNFPVWGMLE-KLAPAFLAGVPAIVKPA---TATA-YLTEAVVRLIVESG-- 202
Query: 452 NILPGTGA---VTGEA--ISQHLKIRK-VGFTGSTVTGMK 485
+LP GA + G A + HL + V FTGS T K
Sbjct: 203 -LLP-EGALQLICGSAGDLLDHLDGQDVVTFTGSAATAQK 240
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 33.9 bits (78), Expect = 0.42
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 142 SAKDLVLTESEEAIIPVLKTIWAGILNSE---VSEDTDFFQSGAGSMDVVRLIEEIKENL 198
SA D TE+E I + +W +L + +S D FF G S+ R+I E+++ L
Sbjct: 840 SAADEEFTETEREI----RDLWLELLPNRPATISPDDSFFDLGGHSILATRMIFELRKKL 895
Query: 199 QITLQNEDVLMSSVFRDFYIKVI--EVSR 225
+ ++ + +F+ IK EV R
Sbjct: 896 NV-----ELPLGLIFKSPTIKGFAKEVDR 919
>gnl|CDD|177047 CHL00124, acpP, acyl carrier protein; Validated.
Length = 82
Score = 30.4 bits (69), Expect = 0.62
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 165 GILNSEVSEDTDFFQS-GAGSMDVVRLIEEIKENLQITLQNED 206
GI SEV+ D +F + GA S+DVV L+ I+E I + +ED
Sbjct: 19 GIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDED 61
>gnl|CDD|161862 TIGR00407, proA, gamma-glutamyl phosphate reductase. The related
model TIGR01092 describes a full-length fusion protein
delta l-pyrroline-5-carboxylate synthetase that includes
a gamma-glutamyl phosphate reductase region as described
by this model. Alternate name: glutamate-5-semialdehyde
dehydrogenase. The prosite motif begins at residue 332
of the seed alignment although not all of the members of
the family exactly obey the motif [Amino acid
biosynthesis, Glutamate family].
Length = 398
Score = 32.5 bits (74), Expect = 0.74
Identities = 57/293 (19%), Positives = 99/293 (33%), Gaps = 82/293 (27%)
Query: 415 CLAAGNTVVMKPSEVSPLTALKLAELSVRA----GFPKGVIN------------------ 452
CL GN V+++ + + + L E+ A G P G +
Sbjct: 125 CLKTGNAVILRGGKEAVRSNKALVEVIQDALAQTGLPVGAVQLIETPSRELVSELLDLDE 184
Query: 453 ----ILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPL 508
++P G I Q I +G G + + + +SA KV + + P
Sbjct: 185 YIDLLIPRGGNGLVRLIKQTSTIPVLG-HGDGICHIYLDESADLIKAIKVIVNAKTQRPS 243
Query: 509 VIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKMNHKAHL 568
C + + V+ I FL + ++ + H
Sbjct: 244 T-------------------------CNAIETLLVNKAIAREFLPVLENQLLEKGVTIHA 278
Query: 569 D----KLIDYCEKAK----------SEGARLLIGGKRLDRPGDVDAVIKRANSTEYGL-- 612
D KL++ A E L + K ++ ++A I+ N +YG
Sbjct: 279 DAYALKLLE-LGPATEAIVCKTDFDKEFLSLDLSVKIVE---SLEAAIQHIN--QYGTQH 332
Query: 613 ASGIFTSDINKAMYFVDKIDSGTVFINTYNK-TDVAAPFGGFKQSGFGKDLDI 664
+ I T + A F + +DS V+ N + TD GF + GFG ++ I
Sbjct: 333 SDAILTENKANAEQFQNGVDSAAVYHNASTRFTD------GF-RFGFGAEVGI 378
>gnl|CDD|223314 COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 80
Score = 29.6 bits (67), Expect = 1.1
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 149 TESEEAIIPVLKTI--WAGILNSEVSEDTDFFQS-GAGSMDVVRLIEEIKENLQITLQNE 205
++ E V I G+ E++ + F + G S+D+V L+ ++E I + +E
Sbjct: 1 SQMEAIEERVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDE 60
Query: 206 DV 207
++
Sbjct: 61 EL 62
>gnl|CDD|187735 cd09766, Csx15_I-U, CRISPR/Cas system-associated protein Csx15.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Small protein loosely associated with CRISPR/Cas
systems; some are fused to AAA ATPase domain, also known
as TTE2665 family.
Length = 101
Score = 30.0 bits (68), Expect = 1.1
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 422 VVMKPSEVSPLTALKLAELSVRAG-FPKGVINILPGTGAV 460
+++ P ++PL A LAEL R G FP V+ + P G+V
Sbjct: 40 ILVNPPGLAPLAAALLAELHGRLGYFPP-VVRLRPVAGSV 78
>gnl|CDD|187729 cd08701, FMT_C_HypX, C-terminal subdomain of the
Formyltransferase-like domain found in HypX-like
proteins. Domain found in HypX-like proteins with
similarity to the C-terminal domain of
Formyltransferase. HypX is involved in the maturation
process of active [NiFe] hydrogenase. [NiFe]
hydrogenases function in H2 metabolism in a variety of
microorganisms, enabling them to use H2 as a source of
reducing equivalents under aerobic and anaerobic
conditions. [NiFe] hydrogenases consist of a large and
a small subunit. The large subunit contains the [NiFe]
active site but is synthesized as a precursor without
the [NiFe] active site. This precursor undergoes a
complex post-translational maturation process that
requires the presence of a number of accessory
proteins. HypX has been shown to be involved in this
maturation process and have been proposed to
participate in the generation and transport of the CO
and CN ligands. However, HypX is not present in all
hydrogen-metabolizing bacteria. Furthermore, hypX
deletion mutants have a reduced but detectable level of
hydrogenase activity. Thus, HypX might not be the
determining factor in the maturation process. Members
of this group have an N-terminal formyl transferase
domain and a C-terminal enoyl-CoA hydratase/isomerase
domain.
Length = 96
Score = 29.9 bits (68), Expect = 1.2
Identities = 18/46 (39%), Positives = 21/46 (45%)
Query: 19 GEEIHNFIRGLDSSPGASTVLNGIEVKVFASSMWEDANIEGTPVTV 64
EEI IR DS PG L G EV +F + E G P T+
Sbjct: 12 AEEILRKIRAADSQPGVLDELFGTEVYLFGAHPEEALPDAGKPGTI 57
>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional.
Length = 390
Score = 31.8 bits (73), Expect = 1.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 449 GVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
G+ NI G GA+ G +S HL + +G+ G+ + ++ S
Sbjct: 336 GIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378
>gnl|CDD|234685 PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.
Length = 417
Score = 31.6 bits (73), Expect = 1.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 597 DVDAVIKRANSTEYGLASG----IFTSDINKAMYFVDKIDSGTVFIN 639
+D I N YG SG I T D A F++++DS V++N
Sbjct: 325 SLDEAIAHIN--RYG--SGHTEAIVTEDYAAAERFLNEVDSAAVYVN 367
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 30.9 bits (70), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 159 LKTIWAGILNSE-VSEDTDFFQSGAGSMDVVRLIEEIKENLQI 200
L IWA +L E V +FF+ G S+ ++I +++ L I
Sbjct: 1035 LAAIWADVLKVERVGLTDNFFELGGHSLLATQVISRVRQRLGI 1077
>gnl|CDD|225487 COG2936, COG2936, Predicted acyl esterases [General function
prediction only].
Length = 563
Score = 30.9 bits (70), Expect = 3.0
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 30 DSSP--GASTVLNGIEVKVFASSMWEDANIEGTPVTVEGSDTPAILHPDGLLFTGSDGQ 86
DS+P V G V +F SS D + V V D +HPDGL + SDG
Sbjct: 421 DSAPLTEDLEVTGGPVVNLFVSSDAPDGD-----VAVRLVD----VHPDGLSYNLSDGI 470
>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated.
Length = 287
Score = 30.3 bits (69), Expect = 3.6
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 437 LAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGF 476
+AE + GFP+ + N+ PG GA + R+VG
Sbjct: 147 IAERGAKMGFPEILFNLFPGMGAYS-------FLARRVGP 179
>gnl|CDD|197223 cd09124, PLDc_like_TrmB_middle, Middle phospholipase D-like domain
of the transcriptional regulator TrmB and similar
proteins. Middle phospholipase D (PLD)-like domain of
the transcriptional regulator TrmB and similar proteins.
TrmB acts as a bifunctional sugar-sensing
transcriptional regulator which controls two operons
encoding maltose/trehalose and maltodextrin ABC
transporters of Pyrococcus fruiosus. It functions as a
dimer. Full length TrmB includes an N-terminal
DNA-binding domain, a C-terminal sugar-binding domain
and middle region that has been named as a PLD-like
domain. The middle domain displays homology to PLD
enzymes, which contain one or two HKD motifs
(H-x-K-x(4)-D, where x represents any amino acid
residue) per chain. The HKD motif characterizes the PLD
superfamily. Due to the lack of key residues related to
PLD activity in the PLD-like domain, members of this
subfamily are unlikely to carry PLD activity.
Length = 126
Score = 28.8 bits (65), Expect = 4.8
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 567 HLDKLIDYCEKAKSEGARLLI---GGKRLDRPGDVDAVIKRANSTEYGLASGIFTSDINK 623
L++L++ EKA G +++I G LD ++ E G + D +
Sbjct: 34 ELEELLEELEKAAERGVKVVIIIFGDDDLDDLDSPAIEVR---VREGGGRPFLLIVDSKE 90
Query: 624 AMYFVDKIDSGTVFINTYNKTDV 646
A+ + T + T N V
Sbjct: 91 ALIGPSSEEEETYALYTENPALV 113
>gnl|CDD|226397 COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA
[Signal transduction mechanisms].
Length = 176
Score = 29.0 bits (65), Expect = 5.3
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 182 AGSMDVVRLIEEIKENLQITLQNEDVLMSSVFRDFYIKVIEVSRQGD 228
++ R I +KE LQ ++ E+ ++V RD I+ ++ GD
Sbjct: 129 GRKINPKRKIIALKEALQDLIEREEFEEAAVIRD-QIRALKAKNGGD 174
>gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase
(GPR), aldehyde dehydrogenase families 18 and 19.
Gamma-glutamyl phosphate reductase (GPR), a L-proline
biosynthetic pathway (PBP) enzyme that catalyzes the
NADPH dependent reduction of L-gamma-glutamyl
5-phosphate into L-glutamate 5-semialdehyde and
phosphate. The glutamate route of the PBP involves two
enzymatic steps catalyzed by gamma-glutamyl kinase (GK,
EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are
fused into the bifunctional enzyme, ProA or
delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in
plants and animals, whereas they are separate enzymes in
bacteria and yeast. In humans, the P5CS (ALDH18A1), an
inner mitochondrial membrane enzyme, is essential to the
de novo synthesis of the amino acids proline and
arginine. Tomato (Lycopersicon esculentum) has both the
prokaryotic-like polycistronic operons encoding GK and
GPR (PRO1, ALDH19) and the full-length, bifunctional
P5CS (PRO2, ALDH18B1).
Length = 406
Score = 29.7 bits (68), Expect = 5.4
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 22/111 (19%)
Query: 543 VDSNIYDAFLEKVVTEVKKMNHKAHLD----KLIDYCEKAKSE------GARLLIGGKRL 592
V +I + FL K+ +++ + D ++ + A E L++ K +
Sbjct: 259 VHRDIAEEFLPKLAEALREAGVELRGDEETLAILPGAKPATEEDWGTEYLD-LILAVKVV 317
Query: 593 DRPGDVDAVIKRANSTEYGLASG----IFTSDINKAMYFVDKIDSGTVFIN 639
D +D I N YG SG I T + A F+ ++DS V++N
Sbjct: 318 D---SLDEAIAHIN--RYG--SGHTEAIVTENYETAERFLREVDSAAVYVN 361
>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 3.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 3, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK3 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK3 is
highly expressed in the brain. It is implicated in
neuronal plasticity, synapse formation, dendritic spine
morphogenesis, cell cycle progression, neuronal
migration, and apoptosis. Inactivating mutations in the
PAK3 gene cause X-linked non-syndromic mental
retardation, the severity of which depends on the site
of the mutation.
Length = 297
Score = 29.7 bits (66), Expect = 5.6
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 188 VRLIEEIKENLQITLQNEDVLMSSVFRDFYIKVIE--VSRQGDVSNQLNHESIKL 240
+R + I N LQN + L S+VFRDF + +E V R+G L H +KL
Sbjct: 221 LRALYLIATNGTPELQNPERL-SAVFRDFLNRCLEMDVDRRGSAKELLQHPFLKL 274
>gnl|CDD|178391 PLN02794, PLN02794, cardiolipin synthase.
Length = 341
Score = 29.0 bits (65), Expect = 8.0
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 9/85 (10%)
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLS--WKM----APCLAAGNTV 422
++ I + + + P+ PL + S WK+ P GN V
Sbjct: 29 AAASSSIIPSPFSPLALHFSHRVSPLSKWFIPFGGPLFLSSPPWKLLQSATPLTLRGNGV 88
Query: 423 VMKPSEVSPLTALKLAELSVRAGFP 447
V+K E L+L AG
Sbjct: 89 VLKKVEA---LNLRLRRARALAGGG 110
>gnl|CDD|215419 PLN02784, PLN02784, alpha-amylase.
Length = 894
Score = 29.6 bits (66), Expect = 8.1
Identities = 29/118 (24%), Positives = 41/118 (34%), Gaps = 5/118 (4%)
Query: 181 GAGSMDVVRLIEEIKENLQITLQNEDVLMSSVFRDFYIKVIEVSRQGDVSNQLNHESIKL 240
G GS + L E++ L + NE + DFY+ ++ S + Q E
Sbjct: 352 GNGSSGLFSLDGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSSLPTQTEQGQSEGKTA 411
Query: 241 NVNKMDVSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAE 298
NK I GE N V S E ++ S +I LAAE
Sbjct: 412 KTNKEVSKSAYTDGIIGEIRNLVIDISSEKGQKTKTK-----ELQESILQEIEKLAAE 464
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC
subfamily, TPP-binding module; composed of proteins
similar to Pseudomonas putida benzoylformate
decarboxylase (BFDC). P. putida BFDC plays a role in the
mandelate pathway, catalyzing the conversion of
benzoylformate to benzaldehyde and carbon dioxide. This
enzyme is dependent on TPP and a divalent metal cation
as cofactors.
Length = 178
Score = 28.7 bits (65), Expect = 8.3
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 568 LDKLIDYCEKAKSEGARLLIGGKRLDRPGDVDAVIKRA 605
LD ID+ AK+ G +R++ P ++D ++ A
Sbjct: 132 LDPGIDFAAIAKAFGVE----AERVETPEELDEALREA 165
>gnl|CDD|233974 TIGR02682, cas_csx11, CRISPR-associated protein, Csx11 family.
Members of this uncommon, sporadically distributed
protein family are large (>900 amino acids) and strictly
associated, so far, with CRISPR-associated (Cas) gene
clusters. Nearby Cas genes always include members of the
RAMP superfamily and the six-gene CRISPR-associated RAMP
module. Species in which it is found, so far, include
three archaea (Methanosarcina mazei, M. barkeri and
Methanobacterium thermoautotrophicum) and two bacteria
(Thermodesulfovibrio yellowstonii DSM 11347 and
Sulfurihydrogenibium azorense) [Mobile and
extrachromosomal element functions, Other].
Length = 918
Score = 29.1 bits (65), Expect = 9.3
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 191 IEEIKENLQITLQNEDVLMSSVFRD---FYIKVIEVSRQGDVSNQLNHESIKLNVNKMDV 247
++EI + L+ L+ E L + ++RD Y V E+ + D + + + +KL ++
Sbjct: 264 LKEIDDKLKKLLEVEYPLGNEIYRDDTGIYFIVPELDKNEDNNLAVLVDDLKLLEEEIIN 323
Query: 248 SFPNQLFINGE 258
F + I GE
Sbjct: 324 EF--EEKITGE 332
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 29.2 bits (66), Expect = 9.5
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 566 AHLDKLIDYCEKAKSEGARLLIGGKRLDRPGDVDAVIKRA 605
D D+ + A++ G G+R++ P ++ ++RA
Sbjct: 514 TDFDPRPDFAKIAEAFGGY----GERVEDPEELKGALRRA 549
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.388
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,870,288
Number of extensions: 3575614
Number of successful extensions: 3845
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3293
Number of HSP's successfully gapped: 287
Length of query: 709
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 605
Effective length of database: 6,324,786
Effective search space: 3826495530
Effective search space used: 3826495530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)