RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15158
(709 letters)
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH,
oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A*
2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A*
3rhl_A*
Length = 517
Score = 670 bits (1730), Expect = 0.0
Identities = 282/490 (57%), Positives = 358/490 (73%), Gaps = 51/490 (10%)
Query: 224 SRQGDVSNQLNHESIKLNVNKMDVSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQ 283
+ D ++ ++ VNK+ + P QLFI GEFV++ G + INP + S IC V
Sbjct: 10 TTGEDDESECVINYVEKAVNKLTLQMPYQLFIGGEFVDAEGSKTYNTINPTDGSVICQVS 69
Query: 284 MANSDDVDIAALAAEKAFE-GEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAV 342
+A DVD A AA++AFE G W +++ARDRG L+++LAD+MEQ++EELATIE+LD+GAV
Sbjct: 70 LAQVSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAV 129
Query: 343 YTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWN 402
YTLALKTHVGMSI T++YFAGWCDKI G+TIPI ARPN N T TK+EP+GVCG++ PWN
Sbjct: 130 YTLALKTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWN 189
Query: 403 YPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTG 462
YPLMMLSWK A CLAAGNTVV+KP++V+PLTALK AEL+++AG PKGV+NILPG+G++ G
Sbjct: 190 YPLMMLSWKTAACLAAGNTVVIKPAQVTPLTALKFAELTLKAGIPKGVVNILPGSGSLVG 249
Query: 463 EAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRM 522
+ +S H +RK+GFTGST G IMKS A SN+KKVSLELGGKSPL+IF D +L+KAV+M
Sbjct: 250 QRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQM 309
Query: 523 SMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM---------------NHKAH 567
M VFFNKGENCI+AGR+FV+ +I++ F++KVV EV+KM NH+AH
Sbjct: 310 GMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAH 369
Query: 568 LDKLIDYCEKAKSEGARLLIGGKRLDRPG------------------------------- 596
L KL++YC++ EGA L+ GG ++ RPG
Sbjct: 370 LRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISR 429
Query: 597 ----DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGG 652
DVDAV+ RAN+TE+GLASG+FT DINKA+Y DK+ +GTVFINTYNKTDVAAPFGG
Sbjct: 430 FADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGG 489
Query: 653 FKQSGFGKDL 662
FKQSGFGKDL
Sbjct: 490 FKQSGFGKDL 499
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 651 bits (1681), Expect = 0.0
Identities = 182/470 (38%), Positives = 260/470 (55%), Gaps = 54/470 (11%)
Query: 243 NKMDVSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE 302
N+ F NQ+FIN E+ ++V + +NP+ IC V + +DVD A AA AF+
Sbjct: 12 NQQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQ 71
Query: 303 --GEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKY 360
W R+ A RG L+ +LADL+E+++ LA +E+LD+G Y ++ + M + +Y
Sbjct: 72 LGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRY 131
Query: 361 FAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGN 420
+AGW DK G TIPI F++T+ EP+GVCG I PWN+PL+M +WK+ P LA GN
Sbjct: 132 YAGWADKYHGKTIPI----DGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGN 187
Query: 421 TVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGST 480
VVMK +E +PLTAL +A L AGFP GV+NI+PG G G AI+ H + KV FTGST
Sbjct: 188 VVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGST 247
Query: 481 VTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGR 540
G I +A SNLK+V+LELGGKSP +I D ++D AV + +FFN+G+ + R
Sbjct: 248 EIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSR 307
Query: 541 IFVDSNIYDAFLEKVVTEVKKM---------------NHKAHLDKLIDYCEKAKSEGARL 585
FV +IYD F+E+ V K + K++ Y K EGA+L
Sbjct: 308 TFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKL 367
Query: 586 LIGGKRLDRPG---------------------------------DVDAVIKRANSTEYGL 612
L GG G ++ V+ RAN++ YGL
Sbjct: 368 LCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGL 427
Query: 613 ASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
A+ +FT D++KA Y + +GTV++N Y+ +PFGG+K SG G++L
Sbjct: 428 AAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGREL 477
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic,
oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP:
c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 649 bits (1677), Expect = 0.0
Identities = 196/463 (42%), Positives = 274/463 (59%), Gaps = 54/463 (11%)
Query: 250 PNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE--GEWSR 307
++FIN E+ +SV G NPA E +C V+ + +DVD A AA +AF+ W
Sbjct: 20 YTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRT 79
Query: 308 LSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDK 367
+ A +RG L+ KLADL+E+++ LAT+E+++ G +++ A +G I T +Y AGW DK
Sbjct: 80 MDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADK 139
Query: 368 ILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPS 427
I G TIP+ + FT+T+ EP+GVCG I PWN+PL+M WK+ P L+ GNTVV+KP+
Sbjct: 140 IQGRTIPM----DGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPA 195
Query: 428 EVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIM 487
E +PLTAL + L AGFP GV+NI+PG G G AIS H+ + KV FTGST G I
Sbjct: 196 EQTPLTALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIK 255
Query: 488 KSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNI 547
++A +SNLK+VSLELGGKSP ++F D +LD AV + GVF+++G+ CI+A R+FV+ +I
Sbjct: 256 EAAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESI 315
Query: 548 YDAFLEKVVTEVKKM---------------NHKAHLDKLIDYCEKAKSEGARLLIGGKRL 592
YD F+ + V KK K +K++D E K EGA+L GG
Sbjct: 316 YDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPW 375
Query: 593 DRPG---------------------------------DVDAVIKRANSTEYGLASGIFTS 619
G +D VIKRAN+T YGL++GIFT+
Sbjct: 376 GNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRANNTFYGLSAGIFTN 435
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
DI+KA+ + SGTV++N Y+ PFGGFK SG G++L
Sbjct: 436 DIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGREL 478
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 634 bits (1639), Expect = 0.0
Identities = 162/465 (34%), Positives = 256/465 (55%), Gaps = 57/465 (12%)
Query: 250 PNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLS 309
+L+I G +V + G++ E INPAN + VQ A+ +DV+ A +A + W+ ++
Sbjct: 6 EQKLYIGGRYVEASSGATFETINPANGEVLAKVQRASREDVERAVQSAVEGQ-KVWAAMT 64
Query: 310 ARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKIL 369
A R ++ + D++ + +ELA +E+LD+G + D +Y+AG I
Sbjct: 65 AMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIE 124
Query: 370 GSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEV 429
G IP+ ++F +T+REP+GV I WNYP+ + WK AP LAAGN ++ KPSEV
Sbjct: 125 GEQIPL----RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIFKPSEV 180
Query: 430 SPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKS 489
+PLTALKLAE+ AG P GV N+L G+G G+ +++H I K+ FTG T TG K+M S
Sbjct: 181 TPLTALKLAEIYTEAGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMAS 240
Query: 490 AAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYD 549
A+ S+LK+V++ELGGKSPL+IF D +LD+A +++ FF+ G+ C + R+F+ +
Sbjct: 241 ASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQA 300
Query: 550 AFLEKVVTEVKKM---------------NHKAHLDKLIDYCEKAKSEGARLLIGGKRLDR 594
F KV+ V+++ H++ ++ Y E K++ ARLL GG+R+
Sbjct: 301 RFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTD 360
Query: 595 PG-------------------------------------DVDAVIKRANSTEYGLASGIF 617
D D I+RAN TEYGLA+G+
Sbjct: 361 GAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVV 420
Query: 618 TSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
T D+ +A + ++++G +INT+ ++ P GG+KQSG G++
Sbjct: 421 TQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGREN 465
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 619 bits (1600), Expect = 0.0
Identities = 164/472 (34%), Positives = 245/472 (51%), Gaps = 60/472 (12%)
Query: 243 NKMDVSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE 302
+ FI+G++V G+ E I PA I + A V+ A +A++A
Sbjct: 7 TPLKAQPKASHFIDGDYVEDNTGTPFESIFPATGEMIAKLHAATPAIVERAIASAKRAQ- 65
Query: 303 GEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFA 362
EW+ +S RG ++ + AD+M + + L+T+E+LD+G + D +++F
Sbjct: 66 KEWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQETIVADPTSGADAFEFFG 125
Query: 363 GWC-DKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNT 421
G + G IP+ +F +TKR P+GVC I WNYP + WK AP L AGN
Sbjct: 126 GIAPSALNGDYIPL-----GGDFAYTKRVPLGVCVGIGAWNYPQQIACWKAAPALVAGNA 180
Query: 422 VVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTV 481
+V KPSE +PL ALK+AE+ + AG PKG+ N++ G TG + H + KV TGS
Sbjct: 181 MVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRD-TGPLLVNHPDVAKVSLTGSVP 239
Query: 482 TGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRI 541
TG K+ +AA +LK V++ELGGKSP+++FDD +++ AV +M G F++ G+ C + R+
Sbjct: 240 TGRKVAAAAA-GHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRV 298
Query: 542 FVDSNIYDAFLEKVVTEVKKM---------------NHKAHLDKLIDYCEKAKSEGARLL 586
FV FLE + + M KA +K++ Y EK K+EGA L+
Sbjct: 299 FVQKKAKARFLENLKRRTEAMILGDPLDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLI 358
Query: 587 IGGKRLDRPG------------------------------------DVDAVIKRANSTEY 610
GG + D D V+ RAN+TE+
Sbjct: 359 TGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDDEDEVLARANATEF 418
Query: 611 GLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
GLA G+FT+D+ +A VD +++GT++INTYN V PFGG KQSGFG++
Sbjct: 419 GLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGSKQSGFGREN 470
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 615 bits (1589), Expect = 0.0
Identities = 171/489 (34%), Positives = 263/489 (53%), Gaps = 60/489 (12%)
Query: 229 VSNQLNHESIKLNVNKMD--VSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMAN 286
L E++ N M+ + +I+GE+V S ++ + INP N+ I +V
Sbjct: 9 SGVDLGTENLYFQSNAMELLKHLSQRQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGT 68
Query: 287 SDDVDIAALAAEKAFE-GEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTL 345
+D + A LAA +AFE GEWS+ +A RG + +AD +++++E LA +E+LD+G
Sbjct: 69 KEDAERAILAARRAFESGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEE 128
Query: 346 ALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPL 405
+ + + + YFAG DK G I P++ + +EP+GV ITPWNYPL
Sbjct: 129 S-YADMDDIHNVFMYFAGLADKDGGEMIDSP--IPDT-ESKIVKEPVGVVTQITPWNYPL 184
Query: 406 MMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAI 465
+ SWK+AP LA G ++VMKPSE++PLT +++ EL GFPKG IN++ G G+ G+ +
Sbjct: 185 LQASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEEVGFPKGTINLILGAGSEVGDVM 244
Query: 466 SQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMG 525
S H ++ V FTG TG IMK+AA +N+ ++LELGGK+P +IFDD + + AV ++
Sbjct: 245 SGHKEVDLVSFTGGIETGKHIMKNAA-NNVTNIALELGGKNPNIIFDDADFELAVDQALN 303
Query: 526 GVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKMN---------------HKAHLDK 570
G +F+ G+ C + RI V ++I D F + ++ VKK+ H +K
Sbjct: 304 GGYFHAGQVCSAGSRILVQNSIKDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNK 363
Query: 571 LIDYCEKAKSEGARLLIGGKRLDRPG---------------------------------- 596
+ Y + AK+EGA + +GGKR DR
Sbjct: 364 IESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVE 423
Query: 597 ---DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGF 653
I+ AN + YGLA +F+ DI KA +K+ GTV+IN ++ AP+GG+
Sbjct: 424 GFETEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGY 483
Query: 654 KQSGFGKDL 662
KQSG G++L
Sbjct: 484 KQSGIGREL 492
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 611 bits (1577), Expect = 0.0
Identities = 159/475 (33%), Positives = 250/475 (52%), Gaps = 63/475 (13%)
Query: 243 NKMDVSFPNQLFINGEFVNSVGGSSMEC-INPANESTICSVQMANSDDVDIAALAAEKAF 301
V + + G + S G++ E PA +C + +++VD A +A+ A+
Sbjct: 12 TGSVVVTDDLNYWGGRRIKSKDGATTEPVFEPATGRVLCQMVPCGAEEVDQAVQSAQAAY 71
Query: 302 EGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYF 361
+WS+++ +R +M + A ++ + ++ +A +E +++G T A + + + +Y+
Sbjct: 72 L-KWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITEA-EYDIDAAWQCIEYY 129
Query: 362 AGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNT 421
AG + G I + P F +T+REP+GVC I WNYP M+ +WK AP LA GN
Sbjct: 130 AGLAPTLSGQHIQL----PGGAFAYTRREPLGVCAGILAWNYPFMIAAWKCAPALACGNA 185
Query: 422 VVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTV 481
VV KPS ++P+T + LAE+ AG P G++N++ G GA TG + H + KV FTGS
Sbjct: 186 VVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQG-GAETGSLLCHHPNVAKVSFTGSVP 244
Query: 482 TGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRI 541
TG K+M+ +A +K V+LELGGKSPL+IF D L+ AVR ++ F +G+ C + R+
Sbjct: 245 TGKKVMEMSA-KTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRV 303
Query: 542 FVDSNIYDAFLEKVVTEVKKM---------------NHKAHLDKLIDYCEKAKSEGARLL 586
FV I FLE+VV K + K LDK++ + +AK EGAR+L
Sbjct: 304 FVQREIMPQFLEEVVKRTKAIVVGDPLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVL 363
Query: 587 IGGKRLDRPG---------------------------------------DVDAVIKRANS 607
GG+ L + V++RAN+
Sbjct: 364 CGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEEEVLQRANN 423
Query: 608 TEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
T +GLASG+FT DI++A +++GT +INTY+ + V PFGG+K SGFG++
Sbjct: 424 TTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFGREN 478
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine
aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD;
2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 608 bits (1571), Expect = 0.0
Identities = 157/473 (33%), Positives = 238/473 (50%), Gaps = 57/473 (12%)
Query: 245 MDVSFPN-QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE- 302
MD+ P QLFING++ V + INPA ++ I + A +DVD+A AA+ A
Sbjct: 1 MDIPIPTRQLFINGDWKAPVLNKRIPVINPATQNIIGDIPAATKEDVDVAVAAAKTALTR 60
Query: 303 ---GEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWK 359
+W+ S R + +A + + K ELA +ES+D G A + ++
Sbjct: 61 NKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPLDEA-AWDIDDVAGCFE 119
Query: 360 YFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAG 419
Y+A +K+ ++ + REPIGV GLITPWNYP++M +WK+AP LAAG
Sbjct: 120 YYADLAEKLDARQKAPVSLPMDTFKSHVLREPIGVVGLITPWNYPMLMATWKVAPALAAG 179
Query: 420 NTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGS 479
++KPSE++ LT L+L E+ G P GV+NIL G G G ++ H + KV FTGS
Sbjct: 180 CAAILKPSELASLTCLELGEICKEVGLPPGVLNILTGLGPEAGAPLATHPDVDKVAFTGS 239
Query: 480 TVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAG 539
+ TG KIM +AA+ +K VSLELGGKSPLV+F+D +LDKA ++ G F+ G+ C +
Sbjct: 240 SATGSKIMTAAAQ-LVKPVSLELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATS 298
Query: 540 RIFVDSNIYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGAR 584
R+ + +I FL ++V +K + + +K++ + AKSEGA
Sbjct: 299 RLILHESIATEFLNRIVKWIKNIKISDPLEEGCRLGPVVSEGQYEKILKFVSNAKSEGAT 358
Query: 585 LLIGGKRLDRPG-----------------------------------DVDAVIKRANSTE 609
+L GG R + + I AN T
Sbjct: 359 ILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKTFSTEEEAIDLANDTV 418
Query: 610 YGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
YGL + + ++D+ + +G V++N AP+GG K+SGFG++L
Sbjct: 419 YGLGAAVISNDLERCERVTKAFKAGIVWVNCSQPCFTQAPWGGVKRSGFGREL 471
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 602 bits (1554), Expect = 0.0
Identities = 150/470 (31%), Positives = 246/470 (52%), Gaps = 56/470 (11%)
Query: 244 KMDVSFPNQLFINGEFVNSVGGSSMECINPAN-ESTICSVQMANSDDVDIAALAAEKAFE 302
++ + Q+ ++G+ V++ GS+++ ++P + + + A++DDV A AA KAF+
Sbjct: 16 RLRIKSRYQMLVDGKSVDAASGSTIDRVSPGHAGEVVGTWPEASADDVRKAVAAARKAFD 75
Query: 303 -GEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYF 361
G W R+S +R LMFK+ADL+ +EELA IESL+ G A + +G D W Y
Sbjct: 76 AGPWPRMSGAERSRLMFKVADLILARQEELALIESLEVGKPIAQA-RGEIGFCADLWSYA 134
Query: 362 AGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNT 421
AG + G T + REP+GV G+ITPWN+P ++ S ++ + +G T
Sbjct: 135 AGQARALEGQTHN---NIGDDRLGLVLREPVGVVGIITPWNFPFIIASERVPWAIGSGCT 191
Query: 422 VVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTV 481
VV+KPSE + T+++LAEL+ AG P GV N++ G G G+ +++ + V FTGS
Sbjct: 192 VVLKPSEFTSGTSIRLAELAREAGIPDGVFNVVTGYGDPAGQVLAEDPNVDMVAFTGSVR 251
Query: 482 TGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRI 541
G K+ + AA +K+V LELGGK P ++F D +LD A GV+ N G+ CIS R+
Sbjct: 252 VGTKLGEIAAR-TVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRL 310
Query: 542 FVDSNIYDAFLEKVVTEVKKM---------------NHKAHLDKLIDYCEKAKSEGARLL 586
V I DA +E+++ +K+ +AH +K+ Y + GA LL
Sbjct: 311 LVQEGIRDALMERLLDISRKVAFGDPLNERTKIGAMISEAHAEKVHSYVTAGITSGAELL 370
Query: 587 IGGKRLDRPG----------------------------------DVDAVIKRANSTEYGL 612
+GG+R+ R D + AN+TE+GL
Sbjct: 371 LGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTADEAVALANATEFGL 430
Query: 613 ASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
++ ++++++ A+ + +I +G +IN+ P GG+K+SG G++L
Sbjct: 431 SASVWSTNLETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLGREL 480
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 587 bits (1517), Expect = 0.0
Identities = 154/470 (32%), Positives = 244/470 (51%), Gaps = 56/470 (11%)
Query: 242 VNKMDVSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAF 301
+ K ++L INGE V+ G NPA + + A+++ VD A AA+ AF
Sbjct: 15 LYKKAGLMQHKLLINGELVSG-EGEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAF 73
Query: 302 EGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYF 361
EW + + + R + KLAD++E+N + A +ES + G A + +D +++F
Sbjct: 74 -AEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFF 132
Query: 362 AGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNT 421
AG + G + + +R+P+GV I PWNYPLMM +WK+AP LAAGN
Sbjct: 133 AGAARCLNGLAAGEY---LEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNC 189
Query: 422 VVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTV 481
VV+KPSE++PLTALKLAEL+ FP GV+NIL G G G+ ++ H K+R V TGS
Sbjct: 190 VVLKPSEITPLTALKLAELAKDI-FPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIA 248
Query: 482 TGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRI 541
TG I+ A S++K+ +ELGGK+P+++FDD +++ V ++N G++C +A RI
Sbjct: 249 TGEHIISHTA-SSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRI 307
Query: 542 FVDSNIYDAFLEKVVTEVKKM---------------NHKAHLDKLIDYCEKAKSEG-ARL 585
+ IYD +EK+ V + + AHL+++ E+AK+ G ++
Sbjct: 308 YAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVGKAVEEAKATGHIKV 367
Query: 586 LIGGKRLDRPG---------------------------------DVDAVIKRANSTEYGL 612
+ GG++ G + + V+ AN ++YGL
Sbjct: 368 ITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQYGL 427
Query: 613 ASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
AS ++T D+ +A ++ G ++NT+ P GG K SG+GKD+
Sbjct: 428 ASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYGKDM 477
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC;
HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 585 bits (1510), Expect = 0.0
Identities = 154/469 (32%), Positives = 246/469 (52%), Gaps = 63/469 (13%)
Query: 250 PNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLS 309
P FI GEFV S G + ++PA + +VD AA AA +AF+ WSR
Sbjct: 26 PALHFIAGEFVPSESGETFPSLDPATNEVLGVAARGGEREVDRAAKAAHEAFQ-RWSRTK 84
Query: 310 ARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKIL 369
A++R + ++A+L+E++ +ELA +E LD+G V + + V + + + ++A + + +
Sbjct: 85 AKERKRYLLRIAELIEKHADELAVMECLDAGQVLRIV-RAQVARAAENFAFYAEYAEHAM 143
Query: 370 -GSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
T P+ +T R P G G+ITPWN PLM+ +W++AP LA GNTVV+KP+E
Sbjct: 144 EDRTFPV----DRDWLYYTVRVPAGPVGIITPWNAPLMLSTWRIAPALAFGNTVVLKPAE 199
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMK 488
SP TA KLAE+ A P GV N++ G G G A+ H + + TG T TG +M+
Sbjct: 200 WSPFTATKLAEILKEADLPPGVFNLVQGFGEEAGAALVAHPLVPLLTLTGETETGKIVMR 259
Query: 489 SAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
+AA +LK++S ELGGKSP ++F D +L++A+ + +F GE C ++ R+ V+ I+
Sbjct: 260 NAA-DHLKRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEEKIF 318
Query: 549 DAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD 593
+ F+ KVV + + H HL +++ Y E K EGARLL+GG+R
Sbjct: 319 EDFVGKVVERARAIRVGHPLDPETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGERAK 378
Query: 594 RPG----------------------------------------DVDAVIKRANSTEYGLA 613
D + +++AN T+YGLA
Sbjct: 379 TSFRGEDLSRGNYLLPTVFVGENHMKIAQEEIFGPVLVAIPFKDEEEALRKANDTKYGLA 438
Query: 614 SGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
+ +FT D+ +A ++++G V++N++N + PFGG K SG ++
Sbjct: 439 AYVFTRDLERAHRLALELEAGMVYLNSHNVRHLPTPFGGVKGSGDRREG 487
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 583 bits (1505), Expect = 0.0
Identities = 142/462 (30%), Positives = 226/462 (48%), Gaps = 56/462 (12%)
Query: 250 PNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLS 309
QL I F +NP + I + A+ +D A AAE+AF G WS+ +
Sbjct: 25 DTQLLIGSRFEAGTEAE-EHILNPRTGAGIIDLAEASHAQIDAAVDAAERAFVG-WSQTT 82
Query: 310 ARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKIL 369
+R + + K+AD +E+ +E A +E+L+ G + ID W++FAG +
Sbjct: 83 PAERSNALLKIADAIEKEADEFAALEALNCGKPINAVKNDELPAIIDCWRFFAGAVRNLH 142
Query: 370 GSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEV 429
+ + +R+PIG+ G I PWNYPLMM++WK+AP + GNTVV KPSE
Sbjct: 143 APAAGEYLP---GHTSMIRRDPIGIVGSIAPWNYPLMMMAWKLAPAIGGGNTVVFKPSEQ 199
Query: 430 SPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKS 489
+PLTALKLA L P+GV+N++ G G G A+ H K+ V TG TG K++ +
Sbjct: 200 TPLTALKLARLIADI-LPEGVVNVITGRGETVGNALINHPKVGMVSITGDIATGKKVLAA 258
Query: 490 AAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYD 549
AA+ +K+ LELGGK+P++++ D +L+ V ++N G++C +A RI+ ++ IY+
Sbjct: 259 AAK-TVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIYE 317
Query: 550 AFLEKVVTEVKKM---------------NHKAHLDKLIDYCEKAKSEG-ARLLIGGKRLD 593
+ + + V + + D++ + E+A + + GG+
Sbjct: 318 KLVADLTSAVSTIRYNLDDDTENEIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGS 377
Query: 594 RPG---------------------------------DVDAVIKRANSTEYGLASGIFTSD 620
G D + AN ++YGLAS ++T D
Sbjct: 378 DEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAVAWANDSDYGLASSVWTKD 437
Query: 621 INKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
I+KAM ++ G +INT+ P GG KQSG+GKD+
Sbjct: 438 ISKAMRAASRLQYGCTWINTHFMLTNEMPHGGIKQSGYGKDM 479
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 524 bits (1352), Expect = 0.0
Identities = 138/464 (29%), Positives = 214/464 (46%), Gaps = 58/464 (12%)
Query: 250 PNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE-GEWSRL 308
++LFI G++ +E PA + V MA + DVD A AA AF+ G W
Sbjct: 8 YDKLFIGGKWTKPSTSDVIEVRCPATGEYVGKVPMAAAADVDAAVAAARAAFDNGPWPST 67
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
+R ++ ++ + K+ + + ++G T+ H S+ YFAG DK+
Sbjct: 68 PPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPPTIIETMHWMGSMGAMNYFAGAADKV 127
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
+ + REP+GV G I WN PL + K+AP L AG T+V+KP+
Sbjct: 128 TWTETRTGSY----GQSIVSREPVGVVGAIVAWNVPLFLAVNKIAPALLAGCTIVLKPAA 183
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMK 488
+PLTA LAE+ G P+GV++++PG G TG+A++ + I FTGS+ G ++ +
Sbjct: 184 ETPLTANALAEVFAEVGLPEGVLSVVPG-GIETGQALTSNPDIDMFTFTGSSAVGREVGR 242
Query: 489 SAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
AAE LK +LELGGKS +I +D +L A+ M + N G+ C++ RI + Y
Sbjct: 243 RAAE-MLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRY 301
Query: 549 DAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD 593
D + V V + + ++ Y K EGARL+ GG R +
Sbjct: 302 DEIVAAVTNFVTALPVGPPSDPAAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPE 361
Query: 594 --------RP---------------------------GDVDAVIKRANSTEYGLASGIFT 618
+P + I AN + YGLA ++T
Sbjct: 362 GLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEEDAIAIANDSVYGLAGSVWT 421
Query: 619 SDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
+D+ K + +I +GT IN Y D +PFGG+K SG G++
Sbjct: 422 TDVPKGIKISQQIRTGTYGINWYA-FDPGSPFGGYKNSGIGREN 464
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 522 bits (1346), Expect = e-180
Identities = 131/464 (28%), Positives = 210/464 (45%), Gaps = 59/464 (12%)
Query: 250 PNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLS 309
+ +ING + + + I+P+ E + + ++ D D A AA+KAF+ W S
Sbjct: 25 KRKFYINGLWDDPSTPHDLYVIDPSTEEACAVISLGSTRDADKAINAAKKAFQ-TWKTTS 83
Query: 310 ARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKIL 369
+R + K+ ++ E+ ++A S++ GA +AL + F +
Sbjct: 84 PHERLGFVEKILEIYEKRSSDMAKTISMEMGAPIDMALNAQTATGSSHIRNFIKAYKEFS 143
Query: 370 GSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEV 429
I + + IGV GLITPWN+P+ ++ K+ P L AG T+V+KPSE+
Sbjct: 144 FQEALI----EGNEQAILHYDAIGVVGLITPWNWPMNQVTLKVIPALLAGCTMVLKPSEI 199
Query: 430 SPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKS 489
+PL+A+ AE+ A P GV N++ G GA G +S H + + FTGST G I K+
Sbjct: 200 APLSAMLFAEILDEAALPSGVFNLINGDGANVGSYLSAHPDLEMISFTGSTRAGKDISKN 259
Query: 490 AAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYD 549
A+ LK+V LELGGK +IF D ++D A++ + F+N G++C + R+ V+ IYD
Sbjct: 260 ASN-TLKRVCLELGGKGANIIFADADID-ALQRGVRHCFYNSGQSCNAPTRMLVEQAIYD 317
Query: 550 AFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKR--- 591
++ +K K DK+ D + EGA L+ GG
Sbjct: 318 KAIKTAKDIAEKTQVGPGHQTGNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPM 377
Query: 592 -LDR-------------------------P-------GDVDAVIKRANSTEYGLASGIFT 618
++R P D + AN TEYGL + I +
Sbjct: 378 GMERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNTEDEAVTLANDTEYGLTNYIQS 437
Query: 619 SDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
D +K ++ SG V +N + + FGG K SG ++
Sbjct: 438 QDRSKCRRIAAQVRSGMVEVNGHE-LPGGSYFGGVKFSGRAREG 480
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 519 bits (1338), Expect = e-179
Identities = 153/463 (33%), Positives = 224/463 (48%), Gaps = 62/463 (13%)
Query: 251 NQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSA 310
+ +INGE+V S ++E INPA E I V N DVD A AA+ + E+ S
Sbjct: 8 TKQYINGEWVESNSNETIEVINPATEEVIGKVAKGNKADVDKAVEAADDVYL-EFRHTSV 66
Query: 311 RDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILG 370
++R L+ K+ E K+++ + + GA +L+ + H M ++ + D
Sbjct: 67 KERQALLDKIVKEYENRKDDIVQAITDELGAPLSLSERVHYQMGLNHFVAARDALDNYEF 126
Query: 371 STIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVS 430
+E IGV GLITPWN+P S K+A AAG+ VV+KPSE +
Sbjct: 127 EERR--------GDDLVVKEAIGVSGLITPWNFPTNQTSLKLAAAFAAGSPVVLKPSEET 178
Query: 431 PLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSA 490
P A+ LAE+ + G PKGV N++ G GA G +S+H K+R + FTGS TG KIM+ A
Sbjct: 179 PFAAVILAEIFDKVGVPKGVFNLVNGDGAGVGNPLSEHPKVRMMSFTGSGPTGSKIMEKA 238
Query: 491 AESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDA 550
A+ + KKVSLELGGKSP ++ DD ++ +A + + G V N G+ C + R+ V + I DA
Sbjct: 239 AK-DFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIKDA 297
Query: 551 FLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKR---- 591
FL ++ + ++ K D++ +Y K EGA L GG
Sbjct: 298 FLAELKEQFSQVRVGNPREDGTQVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGKPEG 357
Query: 592 LDR-------------------------P-------GDVDAVIKRANSTEYGLASGIFTS 619
L++ P D+D I+ AN T+YGLA +
Sbjct: 358 LEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYNDLDEAIQIANDTKYGLAGYVIGK 417
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDL 662
D I++GTV IN PFGG+KQSG G++
Sbjct: 418 DKETLHKVARSIEAGTVEINEAG-RKPDLPFGGYKQSGLGREW 459
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 507 bits (1308), Expect = e-174
Identities = 131/499 (26%), Positives = 212/499 (42%), Gaps = 70/499 (14%)
Query: 252 QLFINGEFVNSVGGSSMECINPAN-ESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSA 310
L INGE V + ++ NPA + + SV AN D + A +A++AF+ W ++
Sbjct: 39 PLIINGERVTT--EDKIQSWNPARKDQLVGSVSKANQDLAEKAIQSADEAFQ-TWRNVNP 95
Query: 311 RDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILG 370
+R +++ K A ++ + K E + ++G + A +ID +Y+A ++
Sbjct: 96 EERANILVKAAAIIRRRKHEFSAWLVHEAGKPWKEA-DADTAEAIDFLEYYARQMIELNR 154
Query: 371 STIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVS 430
+RP P+GV I+PWN+ L ++ + GNTVV+KP+ +
Sbjct: 155 GKEI--LSRPGE-QNRYFYTPMGVTVTISPWNFALAIMVGTAVAPIVTGNTVVLKPASTT 211
Query: 431 PLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSA 490
P+ A K E+ AG PKGVIN +PG+GA G+ + H K + FTGS G+++ + A
Sbjct: 212 PVVAAKFVEVLEDAGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYERA 271
Query: 491 AE-----SNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDS 545
A ++LK+V +E+GGK +V+ D +LD A + F G+ C + R +
Sbjct: 272 AVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHK 331
Query: 546 NIYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGK 590
++YD LEK V K + + +K++ Y E K EG RL+ GG+
Sbjct: 332 DVYDEVLEKTVALAKNLTVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEG-RLMTGGE 390
Query: 591 RLDRPG---------------------------------DVDAVIKRANSTEYGLASGIF 617
G D D ++ AN+TEYGL +
Sbjct: 391 GDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSKANDFDHALEIANNTEYGLTGAVI 450
Query: 618 TSDINKAMYFVDKIDSGTVFIN--TYNKTDVAAPFGGFKQSGFG-KDLDINKAMYFVD-K 673
T + + G ++ N PFGGFK SG K + + K
Sbjct: 451 TRNRAHIEQAKREFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDSKAGGPDYLALHMQAK 510
Query: 674 IDSGTVFINTYNKTDVAAP 692
TV +
Sbjct: 511 ----TVSEMYAENLYFQSH 525
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 499 bits (1287), Expect = e-171
Identities = 133/459 (28%), Positives = 221/459 (48%), Gaps = 53/459 (11%)
Query: 249 FPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRL 308
+ I G++V INP ++S I + A+ DVD A AA+KA EW+
Sbjct: 11 DATKHLIGGQWVEGNSDRISTNINPYDDSVIAESKQASIADVDAAYEAAKKAQ-AEWAAT 69
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
A +R ++++ A+L+E+++EE+ +SG+ + A + ++ + K A + ++
Sbjct: 70 PAAERSAIIYRAAELLEEHREEIVEWLIKESGSTRSKA-NLEITLAGNITKESASFPGRV 128
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
G P R GV G+I+PWN+PL + +AP LA GN VV+KP+
Sbjct: 129 HGRISPSNTP---GKENRVYRVAKGVVGVISPWNFPLNLSIRSVAPALAVGNAVVIKPAS 185
Query: 429 VSPLTALKL-AELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIM 487
+P+T + A + AG P GVI+ + G G+ G+ H + + FTGST G ++
Sbjct: 186 DTPVTGGVIPARIFEEAGVPAGVISTVAGAGSEIGDHFVTHAVPKLISFTGSTPVGRRVG 245
Query: 488 KSAAES-NLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSN 546
+ A +K V+LELGG +P V+ D ++D A + + G F ++G+ C+S R+ VD+
Sbjct: 246 ELAINGGPMKTVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSINRVIVDAA 305
Query: 547 IYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKR 591
++D FLEK V VK + + + L L + E AK EGA + + G
Sbjct: 306 VHDEFLEKFVEAVKNIPTGDPSAEGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPI 365
Query: 592 ------------------------------LDRPGDVDAVIKRANSTEYGLASGIFTSDI 621
+ + D + AN++++GL++ +++ DI
Sbjct: 366 EGRLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAAELANASDFGLSAAVWSKDI 425
Query: 622 NKAMYFVDKIDSGTVFINTYN-KTDVAAPFGGFKQSGFG 659
++A F +IDSG V IN + FGG K SG G
Sbjct: 426 DRAAQFALQIDSGMVHINDLTVNDEPHVMFGGSKNSGLG 464
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 495 bits (1276), Expect = e-169
Identities = 122/490 (24%), Positives = 211/490 (43%), Gaps = 66/490 (13%)
Query: 228 DVSNQLNHESIKLNVNKMDVSFPN--QLFINGEFVNSVGGSSMECINPAN-ESTICSVQM 284
+ +++ + ++ F L+I GE+V++ M +NP+ + +
Sbjct: 13 TFQTEEARRAMREALRRVREEFGRHYPLYIGGEWVDT--KERMVSLNPSAPSEVVGTTAK 70
Query: 285 ANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYT 344
A + + A AA KAF+ W DR L+ K A LM + K EL + G +
Sbjct: 71 AGKAEAEAALEAAWKAFK-TWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWV 129
Query: 345 LALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYP 404
A V +ID +Y+A + + + P + P+G +I PWN+P
Sbjct: 130 EA-SADVAEAIDFIEYYARAALRYRYPAVEVVP-YPGE-DNESFYVPLGAGVVIAPWNFP 186
Query: 405 LMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEA 464
+ + + + +A GNTV+ KP+E + + K+ E+ AGFP GV+N LPG G G
Sbjct: 187 VAIFTGMIVGPVAVGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGEEVGAY 246
Query: 465 ISQHLKIRKVGFTGSTVTGMKIMKSAAE-----SNLKKVSLELGGKSPLVIFDDYNLDKA 519
+ +H +IR + FTGS G+KI ++A + K+ +E GGK+ +++ + + D A
Sbjct: 247 LVEHPRIRFINFTGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGKNAIIVDETADFDLA 306
Query: 520 VRMSMGGVFFNKGENCISAG-RIFVDSNIYDAFLEKVVTEVKKMN--------------H 564
+ + +G+ C SA R+ + Y+ LE+V+ ++++
Sbjct: 307 AEGVVVSAYGFQGQKC-SAASRLILTQGAYEPVLERVLKRAERLSVGPAEENPDLGPVVS 365
Query: 565 KAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG---------------------------- 596
K++ Y E K+EG +L++GGKRL+ G
Sbjct: 366 AEQERKVLSYIEIGKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLS 424
Query: 597 -----DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFIN--TYNKTDVAAP 649
D ++ AN T YGL G+++ + + G ++ N P
Sbjct: 425 VIRVKDFAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQP 484
Query: 650 FGGFKQSGFG 659
FGGFK SG
Sbjct: 485 FGGFKLSGTN 494
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax}
SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A*
1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 482 bits (1243), Expect = e-164
Identities = 115/460 (25%), Positives = 195/460 (42%), Gaps = 58/460 (12%)
Query: 252 QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
++ GE+ S G +E +P + +TI V + ++V+ K +
Sbjct: 20 PSYLAGEWGGS--GQEIEVKSPIDLATIAKVISPSREEVERTLDVLFKRGRWSARDMPGT 77
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
+R ++ K AD++E+N + A + +++G + A V ++D + KI G
Sbjct: 78 ERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAA-VGEVKAAVDRLRLAELDLKKIGGD 136
Query: 372 TIPIAHARPNSN-FTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVS 430
IP +REP+GV ITP+NYPL K+ GN VV+KPS
Sbjct: 137 YIPGDWTYDTLETEGLVRREPLGVVAAITPFNYPLFDAVNKITYSFIYGNAVVVKPSISD 196
Query: 431 PLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSA 490
PL A + + AGFP I +L G E I ++ V FTGST G +++K
Sbjct: 197 PLPAAMAVKALLDAGFPPDAIALLNLPGKE-AEKIVADDRVAAVSFTGSTEVGERVVKVG 255
Query: 491 AESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDA 550
+K+ +ELGG P ++ +D +LD A G++ G+ C + + + +Y
Sbjct: 256 G---VKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVYGK 312
Query: 551 FLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKR---- 591
+E+V + + + +D+++ E A +G R+L GG+R
Sbjct: 313 LVEEVAKRLSSLRVGDPRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLGPT 372
Query: 592 ------LDRPGDV------------------------DAVIKRANSTEYGLASGIFTSDI 621
++ P D D I+ AN YGL + +F D+
Sbjct: 373 YVQPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQAIELANGRPYGLDAAVFGRDV 432
Query: 622 NKAMYFVDKIDSGTVFINTYNKTDVA-APFGGFKQSGFGK 660
K V ++ G ++IN + + PFGG K+SG +
Sbjct: 433 VKIRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVFR 472
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 480 bits (1238), Expect = e-164
Identities = 112/463 (24%), Positives = 196/463 (42%), Gaps = 58/463 (12%)
Query: 249 FPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRL 308
+ +I G+++ G ++E ++P + + S + A++ VD A AA +AF W+R
Sbjct: 4 MMSTHYIAGQWLAG-QGETLESLDPVGQGVVWSGRGADATQVDAAVCAAREAFP-AWARR 61
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
R L+ + A ++ +ELA + ++G + T V ++ +
Sbjct: 62 PLEQRIELLERFAATLKSRADELARVIGEETGKPLWES-ATEVTSMVNKVAISVQAFRER 120
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
G + +P GV + P+N+P + + + P L AGN VV KPSE
Sbjct: 121 TGEKSGPLADA----TAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSE 176
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMK 488
++P A + ++AG P GV+N++ G G TG A++ H + + FTGS+ TG +
Sbjct: 177 LTPKVAELTLKAWIQAGLPAGVLNLVQG-GRETGVALAAHRGLDGLFFTGSSRTGNLLHS 235
Query: 489 SAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
K ++LE+GG +PLV+ + +LD AV + F + G+ C A R+ V +
Sbjct: 236 QFGGQPQKILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAW 295
Query: 549 -DAFLEKVVTEVKKMN----------------HKAHLDKLIDYCEKAKSEGARLLIGGKR 591
DA L ++V + + + L+ E +GA+ L+ +
Sbjct: 296 GDALLARLVAVSATLRVGRFDEQPAPFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQ 355
Query: 592 LDRPG--------------------------------DVDAVIKRANSTEYGLASGIFTS 619
D A I+ AN+T+YGLA+G+ +
Sbjct: 356 PIDGAALLTPGILDVSAVAERPDEEFFGPLLQVIRYSDFAAAIREANATQYGLAAGLLSD 415
Query: 620 DINKAMYFVDKIDSGTVFINT-YNKTDVAAPFGGFKQSGFGKD 661
+ F+ + +G V N +APFGG SG +
Sbjct: 416 SRERFEQFLVESRAGIVNWNKQLTGAASSAPFGGIGASGNHRP 458
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 480 bits (1237), Expect = e-164
Identities = 125/459 (27%), Positives = 207/459 (45%), Gaps = 52/459 (11%)
Query: 249 FPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRL 308
F + NGE+V S G + PA+ + S+ + ++V+ A A+ A + W
Sbjct: 10 FNANILRNGEWVESRTGERISISAPASGVALGSIPALSQEEVNDAIQGAKDAQK-IWKIR 68
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
+R L++ ADL+E+ KE + + + A V + D ++ A ++
Sbjct: 69 PIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKKSA-IGEVSRTADIIRHTADEALRL 127
Query: 369 LGSTIPIAHARPNSN--FTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKP 426
G T+ + S+ +REP+GV I+P+NYP+ + + K+AP L GNTVV KP
Sbjct: 128 NGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVNLAAAKIAPALVTGNTVVFKP 187
Query: 427 SEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKI 486
+ L+ +K+ E AG P+G+I ++ G G+V G+ + +H I + FTG T TG +I
Sbjct: 188 ATQGSLSGIKMVEALADAGAPEGIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTTTGERI 247
Query: 487 MKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSN 546
+ A + V LELGGK P ++ DD +L + G F G+ C + R+FV +
Sbjct: 248 SEKA---KMIPVVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVFVQDS 304
Query: 547 IYDAFLEKVVTEVKKMN--------------HKAHLDKLIDYCEKAKSEGARLLIGGKR- 591
+ D + + V+++ + + + A GA LL G KR
Sbjct: 305 VADQLVANIKELVEQLTVGSPEDDADITPVIDEKSAAFIQGLIDDALENGATLLSGNKRQ 364
Query: 592 -----------------------------LDRPGDVDAVIKRANSTEYGLASGIFTSDIN 622
+ R D + I +N ++YGL + IFT D +
Sbjct: 365 GNLLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLSNQSDYGLQASIFTKDTD 424
Query: 623 KAMYFVDKIDSGTVFINTYNKTDV-AAPFGGFKQSGFGK 660
+A+ ++ GTV IN + PF G K+SG G
Sbjct: 425 RAINIGKHLEVGTVHINAKTERGPDHFPFLGVKKSGLGV 463
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure
initiative, nysgrc, P biology, oxidoreductase; 1.50A
{Methanocaldococcus jannaschii} PDB: 3rhd_A*
Length = 486
Score = 474 bits (1222), Expect = e-161
Identities = 154/456 (33%), Positives = 229/456 (50%), Gaps = 61/456 (13%)
Query: 253 LFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARD 312
+FI+G+++N M+ INP + I + + ++ A AEK E L
Sbjct: 2 MFIDGKWIN---REDMDVINPYSLEVIKKIPALSREEAKEAIDTAEKYKE-VMKNLPITK 57
Query: 313 RGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGST 372
R +++ +A +++ KEELA I ++D+G A + V SI T+K A + +
Sbjct: 58 RYNILMNIAKQIKEKKEELAKILAIDAGKPIKQA-RVEVERSIGTFKLAAFYVKEHRDEV 116
Query: 373 IPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPL 432
IP FT+REP+G+ G ITP+N+PL + + K+AP +A GN +V PS +PL
Sbjct: 117 IPSDDRL-----IFTRREPVGIVGAITPFNFPLNLSAHKIAPAIATGNVIVHHPSSKAPL 171
Query: 433 TALKLAELSVRA----GFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMK 488
++LA++ A P GV N+L G G V G+ I + K+ + FTGS+ G I K
Sbjct: 172 VCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITK 231
Query: 489 SAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
A KK++LELGG +P ++ D +L+KAV + G F G+ CIS G I VD +I
Sbjct: 232 KAG---FKKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIA 288
Query: 549 DAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKR-- 591
D F+E V + K +N H + + EKA EG +LL+GGKR
Sbjct: 289 DKFIEMFVNKAKVLNVGNPLDEKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKRDK 348
Query: 592 -------LDRPGDV-------------------DAVIKRANSTEYGLASGIFTSDINKAM 625
L+ D + +I ANSTEYGL S IFT+DINK++
Sbjct: 349 ALFYPTILEVDRDNILCKTETFAPVIPIIRTNEEEMIDIANSTEYGLHSAIFTNDINKSL 408
Query: 626 YFVDKIDSGTVFINTYNKTDV-AAPFGGFKQSGFGK 660
F + ++ G V IN + PFGG K+SG G+
Sbjct: 409 KFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLGR 444
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 449 bits (1157), Expect = e-151
Identities = 67/498 (13%), Positives = 149/498 (29%), Gaps = 93/498 (18%)
Query: 252 QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
+ + G+++ G + +P + V D + A E L+
Sbjct: 9 KNHVAGQWIAGTGAG-ITLTDPVTGVALVRVSSEGLDLARAFSFAREDGG-AALRALTYA 66
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
R + + L++ + + I + +SG + + I T Y+A +
Sbjct: 67 QRAARLADIVKLLQAKRGDYYAIATANSGTTRNDS-AVDIDGGIFTLSYYAKLGASLGEV 125
Query: 372 TIPIAHARP------NSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMK 425
+ + + GV I +N+P L K AP L +G V++K
Sbjct: 126 HALRDGSAESLSKDRSFSAQHVLSPTRGVALFINAFNFPSWGLWEKAAPALLSGVPVIVK 185
Query: 426 PSEVSPLTALKLAELSVRAG-FPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGM 484
P+ + ++ V AG P G ++I+ G+ + Q V FTGS T
Sbjct: 186 PATATAWLTQRMVADVVDAGILPPGALSIICGSS---AGLLDQIRSFDVVSFTGSADTAA 242
Query: 485 KIMKSAAES-NLKKVSLELGGKSPLVIFDD-----YNLDKAVRMSMGGVFFNKGENCISA 538
+ A +++++ + ++ D D ++ + + G+ C +
Sbjct: 243 TLRAHPAFVQRGARLNVQADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQKCTAI 302
Query: 539 GRIFVDSNIYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGA 583
R FV + LE + ++ K+ + + ++ + E
Sbjct: 303 RRAFVPEAALEPVLEALKAKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAALREEAV 362
Query: 584 RLLIGGKRLDRPGDVDA------------------------------------------- 600
D +
Sbjct: 363 LAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATLLHDVEVFGPVASVAPYRVTTDTNA 422
Query: 601 -----VIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVA-------- 647
+ A + L + I+++D ++ ++ + +
Sbjct: 423 LPEAHAVALARRGQGSLVASIYSNDDAHLGRLALELADSHGRVHAISPSVQHSQTGHGNV 482
Query: 648 ---APFGGFKQSGFGKDL 662
+ GG ++G G++L
Sbjct: 483 MPMSLHGGPGRAGGGEEL 500
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 442 bits (1139), Expect = e-149
Identities = 136/464 (29%), Positives = 225/464 (48%), Gaps = 55/464 (11%)
Query: 245 MDVSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGE 304
M V + ++I+G+FV G + ++ +NPA E+ I + ++D A AAE+A E
Sbjct: 1 MSVPVQHPMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQAEDARKAIDAAERAQP-E 59
Query: 305 WSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGW 364
W L A +R + K++ + + E++ + + G + LA + V + D Y A W
Sbjct: 60 WEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQLA-EVEVAFTADYIDYMAEW 118
Query: 365 CDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVM 424
+ G I RP N + +GV I PWN+P +++ KMAP L GNT+V+
Sbjct: 119 ARRYEGEIIQ--SDRPGENI-LLFKRALGVTTGILPWNFPFFLIARKMAPALLTGNTIVI 175
Query: 425 KPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGM 484
KPSE +P A+ A++ G P+GV N++ G G G+ ++ + K+ V TGS G
Sbjct: 176 KPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGE 235
Query: 485 KIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVD 544
KIM +AA+ N+ KV LELGGK+P ++ DD +L+ AV+ + N G+ C A R++V
Sbjct: 236 KIMATAAK-NITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQ 294
Query: 545 SNIYDAFLEKVVTEVKKMN----------------HKAHLDKLIDYCEKAKSEGARLLIG 588
IYD F+ ++ ++ + + A L+++ +A EGAR+ G
Sbjct: 295 KGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGARVAFG 354
Query: 589 GKRLDRPG---------------------------------DVDAVIKRANSTEYGLASG 615
GK ++ G ++ I AN ++YGL S
Sbjct: 355 GKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAISMANDSDYGLTSS 414
Query: 616 IFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFG 659
I+T ++N AM + + G +IN N + G+++SG G
Sbjct: 415 IYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIG 458
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 441 bits (1138), Expect = e-149
Identities = 123/456 (26%), Positives = 208/456 (45%), Gaps = 54/456 (11%)
Query: 252 QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
+ ++NGE+ S + ++ PA+ + + SV ++++VD +A+KA W LS
Sbjct: 6 KNYVNGEWKLS--ENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQP-AWRALSYI 62
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
+R + K+AD++ ++KE++ I S + Y A + V + + Y A ++ G
Sbjct: 63 ERAAYLHKVADILMRDKEKIGAILSKEVAKGYKSA-VSEVVRTAEIINYAAEEGLRMEGE 121
Query: 372 TIPIAHARPNSN--FTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEV 429
+ S +REP+G+ I+P+NYP+ + K+AP L AGN + KP
Sbjct: 122 VLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQ 181
Query: 430 SPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKS 489
++ L LAE AG P GV N + G G+ G+ I +H + + FTGST G +I K
Sbjct: 182 GSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKM 241
Query: 490 AAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYD 549
A ++ + LELGGK ++ +D +L+ + + G F G+ C + R+ V ++ D
Sbjct: 242 AG---MRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVAD 298
Query: 550 AFLEKVVTEVKKMN--------------HKAHLDKLIDYCEKAKSEGARLLIGGKR---- 591
+EK+ +V + D + A +GA L KR
Sbjct: 299 ELVEKIREKVLALTIGNPEDDADITPLIDTKSADYVEGLINDANDKGATALTEIKREGNL 358
Query: 592 --------------------------LDRPGDVDAVIKRANSTEYGLASGIFTSDINKAM 625
+ R V+ I+ +N +EYGL + IFT+D +A
Sbjct: 359 ICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAF 418
Query: 626 YFVDKIDSGTVFINTYNKTDV-AAPFGGFKQSGFGK 660
++++ GTV IN + PF G K+SG G
Sbjct: 419 GIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGI 454
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 410 bits (1057), Expect = e-137
Identities = 123/463 (26%), Positives = 219/463 (47%), Gaps = 54/463 (11%)
Query: 245 MDVSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGE 304
M N+ FING++ G + + +NP ++S I + +A ++ A A+KA + E
Sbjct: 1 MSFETLNKSFINGKWTGGESGRTEDILNPYDQSVITTASLATGKQLEDAFDIAQKAQK-E 59
Query: 305 WSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGW 364
W++ + DR ++ K + +N++++ + + ++G + + +I +
Sbjct: 60 WAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIKS-TIELEQTIAILDEAMTY 118
Query: 365 CDKILGS-TIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVV 423
++ G +P + R P+GV I+P+N+P+ + +AP +A GN+VV
Sbjct: 119 TGELGGVKEVP---SDIEGKTNKIYRLPLGVISSISPFNFPMNLSMRSIAPAIALGNSVV 175
Query: 424 MKPSEVSPLTALKL-AELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVT 482
KP + ++ + A+ AG P GV+N++ G+ + + R + FTGST
Sbjct: 176 HKPDIQTAISGGTIIAKAFEHAGLPAGVLNVMLTDVKEIGDGMLTNPIPRLISFTGSTAV 235
Query: 483 GMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIF 542
G I + A K+++LELGG +P + D ++D+AV ++ G F ++G+ C+ RI
Sbjct: 236 GRHIGEIAGR-AFKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRII 294
Query: 543 VDSNIYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLI 587
V ++YD F+EK VK++ ++ ++K ++ E+AK++G L +
Sbjct: 295 VHQDVYDEFVEKFTARVKQLPYGDQTDPKTVVGPLINERQIEKALEIIEQAKTDGIELAV 354
Query: 588 GGKRLD------------------------------RPGDVDAVIKRANSTEYGLASGIF 617
GKR+ + G I AN TEYGL+S +F
Sbjct: 355 EGKRVGNVLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAIDMANDTEYGLSSAVF 414
Query: 618 TSDINKAMYFVDKIDSGTVFINTYNKTD-VAAPFGGFKQSGFG 659
TSD+ K F +IDSG +N + D FGG K SG G
Sbjct: 415 TSDLEKGEKFALQIDSGMTHVNDQSVNDSPNIAFGGNKASGVG 457
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein
initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Length = 497
Score = 393 bits (1013), Expect = e-130
Identities = 124/463 (26%), Positives = 213/463 (46%), Gaps = 58/463 (12%)
Query: 249 FPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRL 308
FI G++V S +++ ++P+ I + D + A A+ A + W++L
Sbjct: 11 KNKVNFIGGQYVPSNESDTIDILSPSTGKVIGEIPAGCKADAENALEVAQAAQK-AWAKL 69
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
+AR R +++ A+ + +NK LA + + G + ++A + V ++ Y I
Sbjct: 70 TARTRQNMLRTFANKIRENKHILAPMLVAEQGKLLSVA-EMEVDVTATFIDYGCDNALTI 128
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
G +P + + + P GV IT WN+PL + K+ P L GNT+V+KP++
Sbjct: 129 EGDILP--SDNQDEKI-YIHKVPRGVVVGITAWNFPLALAGRKIGPALITGNTMVLKPTQ 185
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMK 488
+PL +L ++ AG P GV+N++ GTG+V G+ + + + + TGSTV G +I K
Sbjct: 186 ETPLATTELGRIAKEAGLPDGVLNVINGTGSVVGQTLCESPITKMITMTGSTVAGKQIYK 245
Query: 489 SAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
++A + V LELGGK+P+V+ DD +LDKA ++ G F N G+ C R++V +++Y
Sbjct: 246 TSA-EYMTPVMLELGGKAPMVVMDDADLDKAAEDALWGRFANCGQVCTCVERLYVHASVY 304
Query: 549 DAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD 593
D F+ K + VK + ++ +D + +A +GA + GGK
Sbjct: 305 DEFMAKFLPLVKGLKVGDPMDADSQMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTAT 364
Query: 594 RPG-------------DVDA------------------------VIKRANSTEYGLASGI 616
G DV I+ N + YGL++ +
Sbjct: 365 VEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKVSSMEQAIEFCNDSIYGLSAYV 424
Query: 617 FTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFG 659
T + ++ G V+IN G+KQSGFG
Sbjct: 425 HTQSFANINQAISDLEVGEVYINRGMGEQHQGFHNGWKQSGFG 467
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 391 bits (1007), Expect = e-129
Identities = 104/472 (22%), Positives = 199/472 (42%), Gaps = 64/472 (13%)
Query: 243 NKMDVSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFE 302
++ + N+ NG + G + PAN I V+ A+ D + A +A++
Sbjct: 16 KELGLREENEGVYNGSWGGR--GEVITTYCPANNEPIARVRQASVADYEETVKKAREAWK 73
Query: 303 GEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFA 362
W+ + A RG ++ ++ D + + + L ++ SL+ G + V +D Y
Sbjct: 74 -IWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKILVEG-VGEVQEYVDICDYAV 131
Query: 363 GWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTV 422
G I G +P R + + P+G+ G+IT +N+P+ + W A + GN
Sbjct: 132 GLSRMIGGPILP--SERSG-HALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAMICGNVC 188
Query: 423 VMKPSEVSPLTALKLAELSVRA----GFPKGVINILPGTGAVTGEAISQHLKIRKVGFTG 478
+ K + + L ++ + ++ + P + ++ G GA G A+++ ++ + FTG
Sbjct: 189 LWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCG-GADIGTAMAKDERVNLLSFTG 247
Query: 479 STVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISA 538
ST G ++ E + LELGG + ++ F+D +L V ++ G+ C +A
Sbjct: 248 STQVGKQVGLMVQER-FGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTA 306
Query: 539 GRIFVDSNIYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGA 583
R+F+ +I+D + ++ ++ K + + E+AK EG
Sbjct: 307 RRLFIHESIHDEVVNRLKKAYAQIRVGNPWDPNVLYGPLHTKQAVSMFLGAVEEAKKEGG 366
Query: 584 RLLIGGKRLDRPG---------------------------------DVDAVIKRANSTEY 610
++ GGK +DRPG + + V N +
Sbjct: 367 TVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNEEEVFAWNNEVKQ 426
Query: 611 GLASGIFTSDINKAMYFV--DKIDSGTVFINTY-NKTDVAAPFGGFKQSGFG 659
GL+S IFT D+ + ++ D G V +N + ++ FGG K +G G
Sbjct: 427 GLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGG 478
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 389 bits (1003), Expect = e-129
Identities = 153/459 (33%), Positives = 244/459 (53%), Gaps = 54/459 (11%)
Query: 249 FPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRL 308
F Q INGE++++ G +++ NPAN + SV +D+ A AA +A W L
Sbjct: 8 FRQQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALP-AWRAL 66
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
+A++R ++ +LM +++++LA + +L+ G A K + + ++FA +I
Sbjct: 67 TAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEA-KGEISYAASFIEWFAEEGKRI 125
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
G TIP H ++PIGV ITPWN+P M++ K P LAAG T+V+KP+
Sbjct: 126 YGDTIP-GHQADKRLIVI--KQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPAS 182
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMK 488
+P +AL LAEL++RAG P GV N++ G+ G ++ + +RK+ FTGST G ++M+
Sbjct: 183 QTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLME 242
Query: 489 SAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
A ++KKVSLELGG +P ++FDD +LDKAV ++ F N G+ C+ A R++V +Y
Sbjct: 243 QCA-KDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVY 301
Query: 549 DAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD 593
D F EK+ + K++ + + K+ ++ A +GAR++ GGK +
Sbjct: 302 DRFAEKLQQAMSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHE 361
Query: 594 RPG---------DVDA------------------------VIKRANSTEYGLASGIFTSD 620
R G DV A VI +AN TE+GLA+ + D
Sbjct: 362 RGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARD 421
Query: 621 INKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFG 659
+++ + ++ G V INT ++ APFGG K SG G
Sbjct: 422 LSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLG 460
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 389 bits (1002), Expect = e-129
Identities = 141/459 (30%), Positives = 233/459 (50%), Gaps = 54/459 (11%)
Query: 249 FPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRL 308
+Q +I GE+ + ++ E +PA ++ +V + + A AA+ A+ W
Sbjct: 11 LRHQAYIGGEWQAADSDATFEVFDPATGESLGTVPKMGAAETARAIEAAQAAWA-GWRMK 69
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
+A++R ++ + DL+ N ++LA I + + G A K + + ++FA ++
Sbjct: 70 TAKERAAILRRWFDLVIANSDDLALILTTEQGKPLAEA-KGEIAYAASFIEWFAEEGKRV 128
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
G T+P N +EPIGVC ITPWN+P M++ K+ P LAAG +V+KP+E
Sbjct: 129 AGDTLP--TPDANKRI-VVVKEPIGVCAAITPWNFPAAMIARKVGPALAAGCPIVVKPAE 185
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMK 488
+P +AL +A L+ RAG PKGV++++ G G I+ + +RK+ FTGST G +M
Sbjct: 186 STPFSALAMAFLAERAGVPKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLMA 245
Query: 489 SAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
+A +KK++LELGG +P ++FDD +LD AV ++ + N G+ C+ R FV +Y
Sbjct: 246 QSA-PTVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVY 304
Query: 549 DAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD 593
DAF +K+ V K+ ++A + K+ + A ++GA L+ GGKR
Sbjct: 305 DAFADKLAAAVSKLKVGRGTESGATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHA 364
Query: 594 RPG---------DVDA------------------------VIKRANSTEYGLASGIFTSD 620
V +++ AN TE+GLA+ +++ D
Sbjct: 365 LGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELVRLANDTEFGLAAYLYSRD 424
Query: 621 INKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFG 659
I + + ++ G V INT ++ APFGG KQSG G
Sbjct: 425 IGRVWRVAEALEYGMVGINTGLISNEVAPFGGVKQSGLG 463
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 388 bits (998), Expect = e-128
Identities = 129/460 (28%), Positives = 207/460 (45%), Gaps = 55/460 (11%)
Query: 249 FPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRL 308
+I G + +S GG++ + NPA S I V +DV A A + A +
Sbjct: 10 ENLTGYIGGRWKDSAGGATFDVYNPATGSVIAKVPSMPEEDVVAAVEAGQSALR-LTNPW 68
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
R + + D +++N+EE+ I ++ G + A + V + + Y A +
Sbjct: 69 PIETRRKWLEDIRDGLKENREEIGRILCMEHGKPWKEA-QGEVDYAAGFFDYCAKHISAL 127
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
TIP + + P+GV GLI PWN+P+ M++ K++ LAAG V+KP+
Sbjct: 128 DSHTIP--EKPKDCTW-TVHYRPVGVTGLIVPWNFPIGMIAKKLSAALAAGCPSVIKPAS 184
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMK 488
+PLT + + + P G++N++ G +V G+ + +H + + FTGST G K++
Sbjct: 185 ETPLTMIAFFSVMDKLDLPDGMVNLVMGKASVIGKVLCEHKDVPMLSFTGSTEVGRKLIV 244
Query: 489 SAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
A +KK++LELGG +P ++FDD +L+ A + F G+ C+ A RIFV +
Sbjct: 245 DTA-EQVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTCVCANRIFVHEKVA 303
Query: 549 DAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD 593
DAF +K+ V KM +K DK+ + + A +GA L+ G + +
Sbjct: 304 DAFGQKLAERVNKMTVGDGMNDGIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAE 363
Query: 594 RPG----------------------------------DVDAVIKRANSTEYGLASGIFTS 619
+ VI N TE+GLAS +FT+
Sbjct: 364 LGDGLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRTEEEVIDAGNDTEFGLASYVFTA 423
Query: 620 DINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFG 659
D +A + G V NT APFGG K SG G
Sbjct: 424 DAERAQRVAAGLRFGHVGWNTGTGPTPEAPFGGMKASGIG 463
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 387 bits (997), Expect = e-128
Identities = 144/457 (31%), Positives = 239/457 (52%), Gaps = 52/457 (11%)
Query: 249 FPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRL 308
+Q +NG ++++ G++++ NPA+ S I +V + + A A+ KA W+
Sbjct: 31 LKSQCLVNGRWIDAADGTTIKVTNPADGSVIGTVPSLSVATIKEAIDASAKALS-GWAAK 89
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
+A++R ++ K DL+ N +++A I + + G A + V + ++FA ++
Sbjct: 90 TAKERAGILRKWFDLIIANADDIALIMTSEQGKPLAEA-RGEVLYAASFIEWFAEEAKRV 148
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
G TIP + R+P+GV ITPWN+P M++ K AP LAAG T++++P++
Sbjct: 149 YGDTIP--APQNGQRL-TVIRQPVGVTAAITPWNFPAAMITRKAAPALAAGCTMIVRPAD 205
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMK 488
++PLTAL L L+ +AG P GV+ I+ G G ++ + +RK+ FTGST G +M
Sbjct: 206 LTPLTALALGVLAEKAGIPAGVLQIVTGKAREIGAELTSNDTVRKLSFTGSTEVGRLLMA 265
Query: 489 SAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIY 548
A +K++SLELGG +P ++FDD +LD AV +M + N G+ C+ A RI+V +Y
Sbjct: 266 QCA-PTIKRISLELGGNAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRGVY 324
Query: 549 DAFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD 593
D F EK+ +VK++ + + K+ + E A S+GA+L+ GGK L
Sbjct: 325 DKFAEKLAAKVKELKVGNGTEPGVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELG 384
Query: 594 ----RP---GDVDA------------------------VIKRANSTEYGLASGIFTSDIN 622
P V + VI +AN T +GLA+ +T + +
Sbjct: 385 GLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQANDTIFGLAAYFYTENFS 444
Query: 623 KAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFG 659
+A+ + ++ G V NT ++ APFGG KQSG G
Sbjct: 445 RAIRVSEALEYGMVGHNTGLISNEVAPFGGVKQSGLG 481
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion,
oxidoreductase, transit peptide, disease mutation, SSA,
NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A
2w8q_A 2w8r_A*
Length = 487
Score = 379 bits (977), Expect = e-125
Identities = 139/464 (29%), Positives = 225/464 (48%), Gaps = 62/464 (13%)
Query: 249 FPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRL 308
F+ G ++ + ++ +PA+ + + V + A AA +AF W +
Sbjct: 11 LRTDSFVGGRWLPA--AATFPVQDPASGAALGMVADCGVREARAAVRAAYEAFC-RWREV 67
Query: 309 SARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKI 368
SA++R L+ K +LM QNK++LA I + +SG A + S ++F+ ++
Sbjct: 68 SAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEA-HGEILYSAFFLEWFSEEARRV 126
Query: 369 LGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSE 428
G I + ++PIGV +ITPWN+P M++ K+ LAAG TVV+KP+E
Sbjct: 127 YGDIIH--TPAKDRRA-LVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAE 183
Query: 429 VSPLTALKLAELSVRAGFPKGVINILPGTGAVT---GEAISQHLKIRKVGFTGSTVTGMK 485
+P +AL LAEL+ +AG P GV N++P + GEAI + K+ FTGST TG
Sbjct: 184 DTPFSALALAELASQAGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKI 243
Query: 486 IMKSAAESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDS 545
++ AA +++K+VS+ELGG +P ++FD N+D+AV +M F N G+ C+ + + V
Sbjct: 244 LLHHAA-NSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQR 302
Query: 546 NIYDAFLEKVVTEVKK-----------------MNHKAHLDKLIDYCEKAKSEGARLLIG 588
I+DAF++ +KK +N KA ++K+ A S+GA ++ G
Sbjct: 303 GIHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKA-VEKVEKQVNDAVSKGATVVTG 361
Query: 589 GKRLDRPG---------------------------------DVDAVIKRANSTEYGLASG 615
GKR + I AN+ + GLA
Sbjct: 362 GKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGY 421
Query: 616 IFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFG 659
++ D + ++++ G V +N + V PFGG KQSG G
Sbjct: 422 FYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLG 465
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 376 bits (968), Expect = e-123
Identities = 77/463 (16%), Positives = 155/463 (33%), Gaps = 73/463 (15%)
Query: 260 VNSVGGSSMECINPANESTI-CSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMF 318
+N + N + + + +V+ AA AA K + RL+ R L+
Sbjct: 1 MNPQTDNVFYATNAFTGEALPLAFPVHTEVEVNQAATAAAKVARD-FRRLNNSKRASLLR 59
Query: 319 KLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHA 378
+A +E +++ L++ + + + + FA + +
Sbjct: 60 TIASELEARSDDIIARAHLETALPEVRL-TGEIARTANQLRLFADVVNSGSYHQAILDTP 118
Query: 379 RPNSN-----FTFTKREPIGVCGLITPWNYPLMM--LSWKMAPCLAAGNTVVMKPSEVSP 431
P ++ +G + N+PL A LAAG V++K P
Sbjct: 119 NPTRAPLPKPDIRRQQIALGPVAVFGASNFPLAFSAAGGDTASALAAGCPVIVKGHTAHP 178
Query: 432 LTALKLAELSVRA----GFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIM 487
T+ +AE +A P+ + +L G G+A+ H +I+ VGFTGS G +
Sbjct: 179 GTSQIVAECIEQALKQEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVGGGRALF 238
Query: 488 KSAAESNLKKVS--LELGGKSPLVIFDDYNLDKA--VRMSMGGVFFNKGENCISAGRIFV 543
A E + + ELG +P IF KA + + G+ C G +F
Sbjct: 239 NLAHE-RPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFA 297
Query: 544 -DSNIYDAFLEKVVTEVKKMN---------HKAHLDKLIDYCEKAKSEGARLLIGGKRLD 593
++ AF+E + +++ + ++ +++ + +G +
Sbjct: 298 LNTPETQAFIETAQSLIRQQSPSTLLTPGIRDSYQSQVV---SRGSDDGIDVTFSQAESP 354
Query: 594 RPG--------------------------------DVDAVIKRANSTEYGLASGIFTS-- 619
+V ++ + L + I +
Sbjct: 355 CVASALFVTSSENWRKHPAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTATIHATEE 414
Query: 620 DINKAMYFVDKIDS--GTVFINTYNKTDV----AAPFGGFKQS 656
D + + +++ G + N + T V A GG +
Sbjct: 415 DYPQVSQLIPRLEEIAGRLVFNGWP-TGVEVGYAMVHGGPYPA 456
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 360 bits (926), Expect = e-118
Identities = 115/441 (26%), Positives = 189/441 (42%), Gaps = 58/441 (13%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
+NPA T+ ++ AN+ +++ A A F+ +W S R + + + + EE
Sbjct: 12 VNPATGQTLAAMPWANAQEIEHALSLAASGFK-KWKMTSVAQRAQTLRDIGQALRAHAEE 70
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGST-IPIAHARPNSNFTFTKR 389
+A + + G A + V S ++A +L + + + +
Sbjct: 71 MAQCITREMGKPIKQA-RAEVTKSAALCDWYAEHGPAMLNPEPTLVENQQ-----AVIEY 124
Query: 390 EPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKG 449
P+GV I PWN+PL + P L AGN+ ++K + A +A + AG P G
Sbjct: 125 RPLGVILAIMPWNFPLWQVLRGAVPILLAGNSYLLKHAPNVTGCAQMIARILAEAGTPAG 184
Query: 450 VINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLV 509
V + + I+ +I V TGS G I A LKK LELGG P +
Sbjct: 185 VYGWVNANNEGVSQMIN-DPRIAAVTVTGSVRAGAAIGAQAGA-ALKKCVLELGGSDPFI 242
Query: 510 IFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKK-------- 561
+ +D +L+ AV+ ++ G + N G+ C +A R V+ I AF ++ V
Sbjct: 243 VLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIVEEGIAQAFTDRFVAAAAALKMGDPLV 302
Query: 562 -------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG------------------ 596
M D+L + + +EGARLL+GG+++ G
Sbjct: 303 EENDLGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDMTAF 362
Query: 597 ---------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTY 641
D + AN +E+GL++ IFT+D A +++ G VFIN Y
Sbjct: 363 RQELFGPVAAITVAKDAAHALALANDSEFGLSATIFTADDTLAAEMAARLECGGVFINGY 422
Query: 642 NKTDVAAPFGGFKQSGFGKDL 662
+ +D FGG K+SGFG++L
Sbjct: 423 SASDARVAFGGVKKSGFGREL 443
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 360 bits (927), Expect = e-117
Identities = 106/440 (24%), Positives = 189/440 (42%), Gaps = 56/440 (12%)
Query: 271 INPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEE 330
+NP S S +D A A ++ +W R ++ +A+ ++++++E
Sbjct: 9 VNPYTNEAFASYDNPTSKQIDEAINLAHALYK-KWRHEEPASRAEILHDIANALKEHEDE 67
Query: 331 LATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKRE 390
LA + +L+ G + + + K V + + Y+A ++L T + + ++
Sbjct: 68 LAKMMTLEMGKLLSES-KEEVELCVSICNYYADHGPEMLKPTKLNSDLGN----AYYLKQ 122
Query: 391 PIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGV 450
GV PWN+PL + AP GN +++K + P +A A++ RAG P+G
Sbjct: 123 STGVIMACEPWNFPLYQVIRVFAPNFIVGNPILLKHAHNVPGSAALTAKIIKRAGAPEGS 182
Query: 451 INILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVI 510
+ L + + I+ +I+ V TGS G + ++A + NLKK ++ELGG ++
Sbjct: 183 LINLYPSYDQLADIIA-DPRIQGVALTGSERGGSAVAEAAGK-NLKKSTMELGGNDAFIV 240
Query: 511 FDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKK--------- 561
DD + + +N G+ C S+ RI V+ + YD L ++
Sbjct: 241 LDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSRYDEVLHELKNVFSNLKAGDPLEA 300
Query: 562 ------MNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG------------------- 596
MN + +KL ++A GA++ +D G
Sbjct: 301 DTTLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDNPVFD 360
Query: 597 --------------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYN 642
D +A I+ AN + YGL S + SDI++A +I++G IN
Sbjct: 361 KEVFGPIAEVFVVEDDNAAIQLANDSSYGLGSSVIGSDIDRAKKVSAQIETGMTVINGRW 420
Query: 643 KTDVAAPFGGFKQSGFGKDL 662
T PFGG K+SG+G++L
Sbjct: 421 ITSGELPFGGIKKSGYGREL 440
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 373 bits (959), Expect = e-116
Identities = 128/491 (26%), Positives = 203/491 (41%), Gaps = 68/491 (13%)
Query: 228 DVSNQLNHESIKLNVNKMDVSFPN--QLFINGEFVNSVGGSSMECINPAN-ESTICSVQM 284
D + + + ++ ++ LFING+ V + + +NP + +
Sbjct: 507 DFTRADHRAAFPKHIAQVRTQLGKTYPLFINGKEVRT--NDLIPTVNPNKPSEVLGQICQ 564
Query: 285 ANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYT 344
A + +V A AA+ AF W R R + K A + EL+ + L+ G +
Sbjct: 565 AGTTEVGDAIAAAKAAFP-AWRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQWD 623
Query: 345 LALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYP 404
A V +ID +Y+A ++ EP GV +I PWN+P
Sbjct: 624 QAY-ADVTEAIDFLEYYAREMIRLGQPQRV---GHAPGELNHYFYEPKGVAAVIAPWNFP 679
Query: 405 LMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEA 464
L + + + GN VV KPS ++ + L EL AG P+GV N PG G+V G+
Sbjct: 680 LAISMGMASAAIVTGNCVVFKPSGITSIIGWHLVELFREAGLPEGVFNFTPGRGSVMGDY 739
Query: 465 ISQHLKIRKVGFTGSTVTGMKIMKSAAE-----SNLKKVSLELGGKSPLVIFDDYNLDKA 519
+ H I + FTGS TG++I++ AA+ +N+KK+ E+GGK+ ++I DD +LD+A
Sbjct: 740 LVDHPDISLIAFTGSMETGLRIIERAAKVHPGQANVKKIISEMGGKNAIIIDDDADLDEA 799
Query: 520 VRMSMGGVFFNKGENCISAG-RIFVDSNIYDAFLEKVVTEVKKMN--------------- 563
V + F +G+ C SA R+ V +YD F+E++V+ K
Sbjct: 800 VPHVLYSAFGFQGQKC-SACSRVIVLDAVYDKFIERLVSMAKATKVGPSEDPANYMGAVA 858
Query: 564 HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPG--------------------------- 596
+ + +Y E K EG +L G
Sbjct: 859 DDKAMKSIKEYAEIGKREG-HVLYESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPVL 917
Query: 597 ------DVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFIN--TYNKTDVAA 648
D D I+ ANST++ L GIF+ + G ++IN
Sbjct: 918 AVMRAKDFDQAIEWANSTQFALTGGIFSRSPEHLAKARREFRVGNLYINRNNTGALVERQ 977
Query: 649 PFGGFKQSGFG 659
PFGG + SG G
Sbjct: 978 PFGGARMSGVG 988
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research consortium;
HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 321 bits (825), Expect = e-102
Identities = 97/474 (20%), Positives = 165/474 (34%), Gaps = 75/474 (15%)
Query: 252 QLFINGEFVNSVG-GSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSA 310
+ + GE+++ G +S PA++ + +V + V+ A AAE+AF + S
Sbjct: 31 KHLVAGEWLDGAGTFASAPAHGPAHDFAVGTV-----ELVNRACEAAEEAFW-TYGYSSR 84
Query: 311 RDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLA-LKTHVGMSIDTWKYFAG------ 363
++R + +AD +E E + I S ++G A L G + + FA
Sbjct: 85 KERAAFLRAIADEIEARAEAITEIGSQETGL--PEARLNGERGRTTGQLRLFADHIEKGD 142
Query: 364 WCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMM--LSWKMAPCLAAGNT 421
+ D+ + + +P P + P+G + N+PL A LAAG
Sbjct: 143 YLDRRVDAAMPERQPAPRQEIRLV-QRPVGPVAVFGASNFPLAFSTAGGDTAAALAAGCP 201
Query: 422 VVMKPSEVSPLTALKLAELSVRA----GFPKGVINILPGTGAVTGEAISQHLKIRKVGFT 477
VV+K P T +AE A G GV +++ G G A+ QH I+ VGFT
Sbjct: 202 VVVKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQGGSRDVGHALVQHPHIKAVGFT 261
Query: 478 GSTVTGMKIMKSAAES-NLKKVSLELGGKSPLVIFDDYNLDKA---VRMSMGGVFFNKGE 533
GS G + A ELG +P+ + + +A + G + G+
Sbjct: 262 GSLAGGRALFDLCAARPEPIPFFGELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQ 321
Query: 534 NCISAGRIFV-DSNIYDAFLEKVVTEVKKMNHKAHLDKLID--YCEK----AKSEGARLL 586
C + G V + D F V + K+ + L I Y + A + L
Sbjct: 322 FCTNPGIAVVIEGADADRFTTAAVEALAKVAPQTMLTDGIAKAYRDGQARFATRNAVKPL 381
Query: 587 IGGKRLDRPG---------------------------------DVDAVIKRANSTEYGLA 613
+ + R + + A + L
Sbjct: 382 LATESSGRDASPNLFETTGAQFLADHALGEEVFGPLGLVVRVGSPAEMEELARGFQGQLT 441
Query: 614 SGIFT--SDINKAMYFVD--KIDSGTVFINTY----NKTDVAAPFGGFKQSGFG 659
+ I D+ A + +G V +N + D G + S
Sbjct: 442 ATIHMDAGDLETARRLRPVLERKAGRVLVNGFPTGVEVVDSMVHGGPYPASTNF 495
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 302 bits (774), Expect = 4e-90
Identities = 104/480 (21%), Positives = 178/480 (37%), Gaps = 64/480 (13%)
Query: 233 LNHESIKLNVNKMDVSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDI 292
H I L + N + F + A + + A D
Sbjct: 497 AAHPRIPLPCDLFAPERRNSRGVE--FGARTALDQLLTDVKAETGDLKPIADATPDQAHA 554
Query: 293 AALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVG 352
A AA F WSR A R + + A L+E + + G AL + +
Sbjct: 555 AVAAARAGFA-GWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTLDDAL-SELR 612
Query: 353 MSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKM 412
+ D +Y+A K+ GS + P GV I+PWN+PL + ++
Sbjct: 613 EAADFCRYYAAQGRKLFGSETAMP--GPTGESNALTMRGRGVFVAISPWNFPLAIFLGQV 670
Query: 413 APCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIR 472
L AGN+VV KP+E +P A + L AG PK + ++ G G + G A++ H I
Sbjct: 671 TAALMAGNSVVAKPAEQTPRIAREAVALLHEAGIPKSALYLVTGDGRI-GAALTAHPDIA 729
Query: 473 KVGFTGSTVTGMKIMKSAAESN--LKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFN 530
V FTGST I ++ A + + + E GG + ++ ++ + F +
Sbjct: 730 GVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIADATALPEQVADDVVTSAFRS 789
Query: 531 KGENCISAGRIFVDSNIYDAFLEKVVTEVKKMN---------------HKAHLDKLIDYC 575
G+ C + +FV ++ D +E V +++ +L +
Sbjct: 790 AGQRCSALRLLFVQEDVADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHI 849
Query: 576 EKAKSEGARLLIGGKRLD-------------------------------RPGDVDAVIKR 604
+ K+E RL G + RP +++ V++
Sbjct: 850 ARMKTEA-RLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHVVRYRPENLERVLRA 908
Query: 605 ANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAA-----PFGGFKQSGFG 659
T YGL G+ + + +D++ G +++ N+ + A PFGG SG G
Sbjct: 909 IERTGYGLTLGVHSRIDDSIEAIIDRVQVGNIYV---NRNMIGAVVGVQPFGGNGLSGTG 965
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
structural genomics, midwest center for STR genomics;
2.30A {Vibrio parahaemolyticus}
Length = 452
Score = 276 bits (709), Expect = 7e-86
Identities = 79/425 (18%), Positives = 141/425 (33%), Gaps = 74/425 (17%)
Query: 282 VQMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSG- 340
+ + N ++D +KA E E++ S + + Q + LA +SG
Sbjct: 1 MPVTNMAELDAMIARVKKAQE-EFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGM 59
Query: 341 -AVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLIT 399
V +K H + Y ++ G + ++ T T EP+G+ I
Sbjct: 60 GIVEDKVIKNHF---ASEFIYNKYKDEQTCG-ILE----EDDNLGTMTIAEPVGIICGIV 111
Query: 400 PWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAEL----SVRAGFPKGVINILP 455
P P +K L N ++ P + + A+L +V AG PK +I +
Sbjct: 112 PTTNPTSTAIFKSLISLKTRNGIIFSPHPRAKNSTNDAAKLVLDAAVAAGAPKDIIGWID 171
Query: 456 GTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYN 515
A+ +H I + TG AA S+ K G P+VI + +
Sbjct: 172 QPSVELSNALMKHDDIALILATGGPGMV-----KAAYSSGKPAIGVGAGNVPVVIDETAD 226
Query: 516 LDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM------------- 562
+ +AV + F+ G C S + V +YD E+ + +
Sbjct: 227 IKRAVASVLMSKTFDNGVVCASEQAVIVVDEVYDEVKERFASHKAHVLSKTDADKVRKVL 286
Query: 563 -NHKAHLDKLIDYCEKAKSEGARLLIGGK------------RLDRP-------------- 595
A K++ A +E A + + D
Sbjct: 287 LIDGALNAKIVGQPATAIAEMAGVKVPADTKVLIGEGLGKVSYDDAFAHEKLSPTLGMFR 346
Query: 596 -GDVDAVIKRA----NSTEYGLASGIFTSD---INKAMYFVDKIDSGTVFINTYNKTDVA 647
+ + + +A G SG++T+ ++ YF DK+ + + IN
Sbjct: 347 ADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRYFGDKMKTARILINI------P 400
Query: 648 APFGG 652
GG
Sbjct: 401 TTHGG 405
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Length = 486
Score = 258 bits (662), Expect = 2e-78
Identities = 137/470 (29%), Positives = 218/470 (46%), Gaps = 70/470 (14%)
Query: 252 QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
+ +INGE+V S + +NPA + +C V ++ +D+D AA A +AF+ WS+++
Sbjct: 7 KNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFK-TWSKVAVP 65
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
R ++F L+ Q+KEELA + ++++G A VG I+ ++ AG ++G
Sbjct: 66 RRARILFNFQQLLSQHKEELAHLITIENGKNTKEA-LGEVGRGIENVEFAAGAPSLMMGD 124
Query: 372 TIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSP 431
++ R PIGV G I P+N+P+M+ W +A GNT ++KPSE +P
Sbjct: 125 SLASIATDVE---AANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTP 181
Query: 432 LTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
L KL EL +AG PKGV N++ G I +H +I+ + F GS G + K +
Sbjct: 182 LLTEKLVELFEKAGLPKGVFNVVYG-AHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGS 240
Query: 492 ESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENC--ISAGRIFVDSNIYD 549
E NLK+V G K+ ++ +D NL+ V +G F + GE C + + I D
Sbjct: 241 E-NLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEG--IAD 297
Query: 550 AFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLL-------- 586
F+ K+ +V + + + + + Y EK EGARL+
Sbjct: 298 EFMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVS 357
Query: 587 -----IGGKRLD---------------------RPGDVDAVIKRANSTEYGLASGIFTSD 620
+G D R ++ I+ AN +E+ + +FTS+
Sbjct: 358 DDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSN 417
Query: 621 INKAMYFVDKIDSGTVFINTYNKTDVAAP-----FGGFKQSGFGKDLDIN 665
N YF + ID+G + IN V AP F G+K S FG L N
Sbjct: 418 SNAIRYFRENIDAGMLGIN----LGVPAPMAFFPFSGWKSSFFG-TLHAN 462
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 258 bits (661), Expect = 5e-78
Identities = 116/473 (24%), Positives = 195/473 (41%), Gaps = 72/473 (15%)
Query: 252 QLFINGEFVNSVGGSSMECINPANESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
FI+G+ V G NPA +V +A+ D+ A +A+ A +W+ + +
Sbjct: 28 GHFIDGKRVAGTSGRVSNIFNPATGEVQGTVALASDADLAAAVESAKAAQP-KWAATNPQ 86
Query: 312 DRGHLMFKLADLMEQNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILGS 371
R + K L+ N ELA + S + G A K + ++ ++ G
Sbjct: 87 RRARVFMKFVQLLNDNMNELAEMLSREHGKTIDDA-KGDIVRGLEVCEFVIGIPHLQKSE 145
Query: 372 TIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSP 431
A + ++ R+P+G+ ITP+N+P M+ W AP +A GN ++KPSE P
Sbjct: 146 FTEGAGPGID---MYSIRQPVGIGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDP 202
Query: 432 LTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAA 491
++LAEL + AG P G++N++ G +AI H I V F GST + +AA
Sbjct: 203 SVPIRLAELMIEAGLPAGILNVVNGDKGAV-DAILTHPDIAAVSFVGSTPIARYVYGTAA 261
Query: 492 ESNLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENC--ISAGRIFVDSNIYD 549
N K+ G K+ ++I D +LD+A +G + + GE C IS + V +
Sbjct: 262 M-NGKRAQCFGGAKNHMIIMPDADLDQAANALIGAGYGSAGERCMAISVA-VPVGEETAN 319
Query: 550 AFLEKVVTEVKKMN---------------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDR 594
++K+V V+ + K ++ + +GA+L++ G+
Sbjct: 320 RLIDKLVPMVESLRIGPYTDEKADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKL 379
Query: 595 PG-------------------------------------DVDAVIKRANSTEYGLASGIF 617
G + + + EYG I+
Sbjct: 380 QGYENGHFIGGCLFDDVTPDMDIYKTEIFGPVLSVVRARNYEEALSLPMKHEYGNGVAIY 439
Query: 618 TSDINKAMYFVDKIDSGTVFINTYNKTDVAAP-----FGGFKQSGFGKDLDIN 665
T D + A F +I+ G V +N + P FGG+K S FG DL+ +
Sbjct: 440 TRDGDAARDFASRINIGMVGVN----VPIPVPLAYHSFGGWKSSSFG-DLNQH 487
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics,
PSI-2, protein initiative; 2.00A {Listeria
monocytogenes}
Length = 464
Score = 256 bits (655), Expect = 7e-78
Identities = 67/421 (15%), Positives = 129/421 (30%), Gaps = 71/421 (16%)
Query: 283 QMANSDDVDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSG-- 340
+ + +V +A KA + E + +S + ++ +AD +E+LA + ++G
Sbjct: 7 DLRSIQEVRNLIESANKAQK-ELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFG 65
Query: 341 AVYTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITP 400
+K K+ + + + N P+GV + P
Sbjct: 66 IWQDKVIKNVFAS-----KHVYNYIKDMKTIGML---KEDNEKKVMEVAVPLGVVAGLIP 117
Query: 401 WNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAEL----SVRAGFPKGVINILPG 456
P + +K + AGN++V P + L+ + + +AG PKG I+ +
Sbjct: 118 STNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILETVRIISEAAEKAGCPKGAISCMTV 177
Query: 457 TGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGKSPLVIFDDYNL 516
+ + +H + TG + AA S+ G P I N+
Sbjct: 178 PTIQGTDQLMKHKDTAVILATGGSAMV-----KAAYSSGTPAIGVGPGNGPAFIERSANI 232
Query: 517 DKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVK---------------- 560
+AV+ + F+ G C S + V+ +A + + +
Sbjct: 233 PRAVKHILDSKTFDNGTICASEQSVVVERVNKEAVIAEFRKQGAHFLSDAEAVQLGKFIL 292
Query: 561 ----KMNHK---AHLDKLIDYCEKAKSEGARLLIGGKRLDRPG----------------- 596
MN + + + AR+LI +
Sbjct: 293 RPNGSMNPAIVGKSVQHIANLAGLTVPADARVLIAEETKVGAKIPYSREKLAPILAFYTA 352
Query: 597 -DVDAVIKRANSTEY----GLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFG 651
+ + Y G I + D F K + +NT G
Sbjct: 353 ETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFALKKPVSRLLVNT------PGALG 406
Query: 652 G 652
G
Sbjct: 407 G 407
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 217 bits (555), Expect = 2e-62
Identities = 89/473 (18%), Positives = 170/473 (35%), Gaps = 79/473 (16%)
Query: 253 LFINGEFVNSVGGSSMECINPAN-ESTICSVQMANSDDVDIAALAAEKAFEGEWSRLSAR 311
+ E V + ++P N + A+ ++ A AA A + EW
Sbjct: 66 CVVGDEEVWT--SDIQYQLSPFNHAHKVAKFCYADKALLNRAIDAALAARK-EWDLKPMA 122
Query: 312 DRGHLMFKLADLME-QNKEELATIESLDSGAVYTLALKTHVGMSIDTWKYFAGWCDKILG 370
DR + K AD++ + E+ + G A ID +++ A + ++ G
Sbjct: 123 DRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEG 182
Query: 371 STIPIAHARPNSNFTFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVS 430
PI+ ++ + R G I+P+N+ + + AP GN V+ KPS+ +
Sbjct: 183 EQ-PISVPPSTNHTVY--RGLEGFVAAISPFNFTAIGGNLAGAP-ALMGNVVLWKPSDTA 238
Query: 431 PLTALKLAELSVRAGFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSA 490
L + + + AG P +I +P G G+ ++ + + FTGS T + +
Sbjct: 239 MLASYAVYRILREAGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQV 298
Query: 491 AES-----NLKKVSLELGGKSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDS 545
A++ +++ E GGK+ + ++D V ++ F G+ C + R++V
Sbjct: 299 AQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPK 358
Query: 546 NIYDAFLEKVVTEVKKMN----------------HKAHLDKLIDYCEKAKSEG-ARLLIG 588
+++ +++ E ++ ++ + E A+S +L G
Sbjct: 359 SLWPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAG 418
Query: 589 GKRLDRPG-----------------------------------DVDAVIKRANS-TEYGL 612
G+ + G +K +S T YGL
Sbjct: 419 GQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVYVYPDDKYRETLKLVDSTTSYGL 478
Query: 613 ASGIFTSDINKAMYFVDKIDSGTVFI--NTY-NKTDVAA-----PFGGFKQSG 657
+F D V + N Y N + PFGG + SG
Sbjct: 479 TGAVFAQD----KAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASG 527
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann
fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A*
1ad3_A*
Length = 469
Score = 176 bits (448), Expect = 2e-48
Identities = 87/330 (26%), Positives = 136/330 (41%), Gaps = 69/330 (20%)
Query: 385 TFTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRA 444
+ EP+GV +I WNYP + M +AAGN VV+KPSE+S A LA + +
Sbjct: 114 LYIHSEPLGVVLVIGTWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLATI-IPQ 172
Query: 445 GFPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGG 504
K + ++ G G + + + + +TGST G IM +AA+ +L V+LELGG
Sbjct: 173 YLDKDLYPVING-GVPETTELLK-ERFDHILYTGSTGVGKIIMTAAAK-HLTPVTLELGG 229
Query: 505 KSPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKM-- 562
KSP + + +LD A R G F N G+ C++ I D +I + +EK+ +K+
Sbjct: 230 KSPCYVDKNCDLDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYG 289
Query: 563 -------------NHKAHLDKLIDYCEKAKSEGARLLIGGKR----------------LD 593
+ + H +++ EG ++ GG
Sbjct: 290 EDAKKSRDYGRIISAR-HFQRVMGLI-----EGQKVAYGGTGDAATRYIAPTILTDVDPQ 343
Query: 594 RP----------------GDVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVF 637
P ++ I+ N E LA +F+S+ + + SG V
Sbjct: 344 SPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSGGVA 403
Query: 638 INTYNKTDV-------AAPFGGFKQSGFGK 660
N DV + PFGG SG G
Sbjct: 404 AN-----DVIVHITLHSLPFGGVGNSGMGS 428
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 166 bits (423), Expect = 5e-45
Identities = 85/336 (25%), Positives = 153/336 (45%), Gaps = 41/336 (12%)
Query: 386 FTKREPIGVCGLITPWNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAG 445
+ +EP GV +I P+NYP+ + + + GNT ++KPSE +P T+ + ++ +
Sbjct: 125 YVVQEPYGVTYIIGPFNYPVNLTLTPLIGAIIGGNTCIIKPSETTPETSAVIEKI-IAEA 183
Query: 446 FPKGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIMKSAAESNLKKVSLELGGK 505
F + ++ G G + L + FTGS G +M++AA+ +L V LELGGK
Sbjct: 184 FAPEYVAVIQG-GRDENSHLLS-LPFDFIFFTGSPNVGKVVMQAAAK-HLTPVVLELGGK 240
Query: 506 SPLVIFDDYNLDKAVRMSMGGVFFNKGENCISAGRIFVDSNIYDAFLEKVVTEVKKMN-- 563
PL++ D +LD+ V M G F N G+ I+ ++V ++ DA LE++V VK
Sbjct: 241 CPLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVKDALLERLVERVKTELPE 300
Query: 564 --------HKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPGDVD-AVIKRANSTEYGLAS 614
+ + +L+ E + ++L+G + + V+ + ++
Sbjct: 301 INSTGKLVTERQVQRLVSLLEATQ---GQVLVGSQADVSKRALSATVVDGVEWNDPLMSE 357
Query: 615 GIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSGFGKDLDINKAMYFVDKI 674
+F + + D + + +N ++ +A FGKD+D+ K +++I
Sbjct: 358 ELFGPIL--PVLEFDSVRTAIDQVNKHHPKPLAVYV-------FGKDMDVAK--GIINQI 406
Query: 675 DSGTVFINTYNKTDV-------AAPFGGFKQSGFGK 703
SG +N V PFGG SG G+
Sbjct: 407 QSGDAQVN-----GVMLHAFSPYLPFGGIGASGMGE 437
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding,
acyl carrier protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 94.7 bits (235), Expect = 2e-23
Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 133 ACNFGKEKDSAKDLVLTESEEAIIPVLKTIWAGILNS--EVSEDTDFFQSGAGSMDVVRL 190
+ F K S+ L LTE+E ++++W IL EV + TDFF+SGA S+DVVRL
Sbjct: 5 SSGFFKGAASSV-LELTEAELVTAEAVRSVWQRILPKVLEVEDSTDFFKSGAASVDVVRL 63
Query: 191 IEEIKENL-QITLQNEDVLMSSVFRDFYIKVIEVSRQGD 228
+EE+KE + L+NEDV M+S F DF ++ R D
Sbjct: 64 VEEVKELCDGLELENEDVYMASTFGDFIQLLVRKLRGDD 102
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide
biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP:
b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Length = 329
Score = 68.4 bits (168), Expect = 1e-12
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 13 IKFNLKGEEIHNFIRGLDSSPGASTVLNGIEVKVFASSMWEDANI-EGTPVTVEGSDTPA 71
I ++ E IHN+IRG D PGA T ++ F S++ + EG + + G+ P
Sbjct: 233 INWDQPAEAIHNWIRGNDKVPGAWTEACEQKLTFFNSTLNTSGLVPEGDALPIPGAHRPG 292
Query: 72 ILHPDGLLFTGSDGQKVR 89
++ GL+ G+D + +
Sbjct: 293 VVTKAGLILFGNDDKMLL 310
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 8e-11
Identities = 99/659 (15%), Positives = 180/659 (27%), Gaps = 223/659 (33%)
Query: 128 NKMIHACN-----FGKEKDSAKDLVLTESEEAIIPVLKT-------------------IW 163
+ + F E + + ++ +L W
Sbjct: 12 GEHQYQYKDILSVF--EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 164 AGILNSEVSEDTDFFQSGAGSMDVVRLIEEIKENLQITLQNEDVLMSSVFRDFYIKVIEV 223
L S+ E F ++ L+ IK + + + RD +V
Sbjct: 70 --TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQV 125
Query: 224 SRQGDVSNQLNHESIKLNVNKMDVSFPNQ-LFINGEFVNSVGGSSMECINPANESTICSV 282
+ +VS + ++ + ++ P + + I+G V GS + A +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELR---PAKNVLIDG-----VLGSGKTWV--ALDV----- 170
Query: 283 QMANSDDVDIAALAAEKAFEGE--WSRLSARDRGH-LMFKLADL---MEQNKEELA---- 332
S V + + + W L + ++ L L ++ N +
Sbjct: 171 --CLSYKV-------QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 333 ----TIESLDSGAVYTLALKTHVGM--------SIDTWKYFAGWCDKILGST-------- 372
I S+ + L K + + W F C KIL +T
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-KILLTTRFKQVTDF 280
Query: 373 --------IPIAHARPNSNFTFTKRE----------------PIGVCGLITP-------- 400
I + H T T E P V P
Sbjct: 281 LSAATTTHISLDHHSM----TLTPDEVKSLLLKYLDCRPQDLPREVLT-TNPRRLSIIAE 335
Query: 401 --------WNYPLMMLSWKMAPCLAAGNTV-----VMKPSEVSPLTALKLAELSVRAGFP 447
W+ WK C + V++P+E + LSV FP
Sbjct: 336 SIRDGLATWDN------WKHVNCDKLTTIIESSLNVLEPAEYRKM----FDRLSV---FP 382
Query: 448 KGVINILPGTGAVTGEAISQHLKIRKVGFTGSTVTGMKIM-----KSAAESNLKK----- 497
+I P + L + + F M ++ S E K+
Sbjct: 383 PSA-HI-P----------TILLSL--IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 498 --VSLELGGKSPLV------IFDDYNLDKA------VRMSMGGVFFN----------KGE 533
+ LEL K I D YN+ K + + F++ E
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 534 NCISAGRIFVDSNIYDAFLE-KVVTEVKKMNHKAH-LDKLID---YCEK--AKSEGARLL 586
+F+D FLE K+ + N L+ L Y + ++
Sbjct: 489 RMTLFRMVFLD----FRFLEQKIRHDSTAWNASGSILNTLQQLKFY-KPYICDNDPKY-- 541
Query: 587 IGGKRLDRPGDVDAVIKRANSTEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTD 645
+RL V+A++ E L +T + A+ + +F + +
Sbjct: 542 ---ERL-----VNAILDFLPKIEENLICSKYTDLLRIALMA----EDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 3e-10
Identities = 92/609 (15%), Positives = 170/609 (27%), Gaps = 204/609 (33%)
Query: 2 KQFDDAISITVIKFN---LKGEEIHNFIRGLDSSPGASTVLNGIEVKVFASSMWEDANIE 58
QFD +++ + +F L+G +IH L + V +K + ++ +
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR----IMA 133
Query: 59 GTPVTVEGSDTPAILH--PDG-----LLFTGSDGQKVRNNNQNVDGQYLI-LRSLVLMNV 110
P + + A+ +G +F G GQ N + Y LR
Sbjct: 134 KRPFDKKSN--SALFRAVGEGNAQLVAIF-G--GQ---GNTDD----YFEELRD------ 175
Query: 111 TRFLFDM-KVNVKRLLVDNKMIHACNFGKEKDSAKDLVLTESEEAIIPVLKTIWAGILNS 169
L+ V V L+ + L L
Sbjct: 176 ---LYQTYHVLVGDLI---------------------------KFSAETLSE-----LIR 200
Query: 170 EVSEDTDFFQSGAGSMDVVRLIEEIKENLQITLQNEDVLMSSVFRDFYIKVIEVSRQGDV 229
+ F G ++++ +E ++D L+S +I V
Sbjct: 201 TTLDAEKVFTQG---LNILEWLEN-----PSNTPDKDYLLSIPIS---CPLIGVI----- 244
Query: 230 SNQLNHESIKLNVNKMDVSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDD 289
QL H + + P GE + + G++ + + +V +A +D
Sbjct: 245 --QLAHYVVTAKLLGFT---P------GELRSYLKGATG-HS----QGLVTAVAIAETDS 288
Query: 290 ----VDIAALAAEKAFEGEWSRLSARDRGHLMFKLADLMEQNKEELATIESLDSG---AV 342
A F + + R + + L +SL++
Sbjct: 289 WESFFVSVRKAITVLF---FIGV----RCYEAYPNTSL-----PPSILEDSLENNEGVPS 336
Query: 343 YTLALKTHVGMSIDTWKYFAGWCDKILGSTIPIAHARPNS--NFTFTKREPIGVCGLITP 400
L++ ++ + + + + L + + + N N V G
Sbjct: 337 PMLSIS---NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--------VSG---- 381
Query: 401 WNYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAELSVRAGFPKGVINILPGT--- 457
P S L N + K S L + S R K LP
Sbjct: 382 --PP---QS------LYGLNLTLRKAKAPSGLDQSR-IPFSERK--LKFSNRFLPVASPF 427
Query: 458 ------GAVTGEAISQHLKIRKVGFTGS--------TVTGMKIMKSAAESNLKKVSLELG 503
A + I++ L V F T G S+L+ +S +
Sbjct: 428 HSHLLVPAS--DLINKDLVKNNVSFNAKDIQIPVYDTFDG---------SDLRVLSGSIS 476
Query: 504 GKSPLV--IFDDY-NLDKAVRMS------MG-------GVFFNK-----GENCISAGRIF 542
+ +V I + + G GV ++ G I AG
Sbjct: 477 ER--IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT-- 532
Query: 543 VDSNIYDAF 551
+D N D +
Sbjct: 533 LDINPDDDY 541
Score = 50.8 bits (121), Expect = 2e-06
Identities = 53/308 (17%), Positives = 95/308 (30%), Gaps = 113/308 (36%)
Query: 28 GLD---SSPGASTVLNGIEVKVFASSMWEDA-----NIEGTPVTVEGSDTPAILHPDGLL 79
G+D +S A V W A + G + + P L +
Sbjct: 1632 GMDLYKTSKAAQDV-------------WNRADNHFKDTYGFSILDIVINNPVNLT---IH 1675
Query: 80 FTGSDGQKVRNNNQNVDGQYLILRSLVLMNVTRFLFDMKVNVKRLLVD-NKMIHACNFGK 138
F G G+++R N Y + + + D K+ +++ + N+ + F
Sbjct: 1676 FGGEKGKRIREN-------YSAM-------IFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 139 EKDSAKDLVLTES--------EEAIIPVLKTIWAGILNSEVSEDTDFF-----------Q 179
EK L T+ E+A LK+ G++ ++ F
Sbjct: 1722 EKG---LLSATQFTQPALTLMEKAAFEDLKS--KGLIPAD-----ATFAGHSLGEYAALA 1771
Query: 180 SGAGSM---DVVRLIEEIKENLQITLQNEDVLMSSVF-RDFYIKVIEVSRQGDVSNQLNH 235
S A M +V + VF R ++V+ D + N+
Sbjct: 1772 SLADVMSIESLVEV---------------------VFYRG---MTMQVAVPRDELGRSNY 1807
Query: 236 ESIKLNVNKMDVSFPNQLFINGEFVNSVGGSSMECINPANESTICSVQMANSDD---V-- 290
I +N ++ SF + V VG + + N N ++ V
Sbjct: 1808 GMIAINPGRVAASFSQEALQ--YVVERVGKRTGWLVEIVNY---------NVENQQYVAA 1856
Query: 291 -DIAALAA 297
D+ AL
Sbjct: 1857 GDLRALDT 1864
Score = 36.6 bits (84), Expect = 0.033
Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 56/207 (27%)
Query: 5 DDAISITVIKFNLKGEEIHNFIRGLDSSPGASTVLNGIEV---KVFASSMWEDANIEGT- 60
+ I+++ N G + N + + S P S L G+ + K A S + + I +
Sbjct: 363 GKQVEISLV--N--GAK--NLV--V-SGPPQS--LYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 61 ----------PVTV-EGSD--TPAI------LHPDGLLFTGSDGQK-VRNNNQNVDGQYL 100
PV S PA L + + F D Q V + D
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD---- 467
Query: 101 ILRSLVLMNVTRFLFDMKVNVKRLLVD------NKMIHACNFGKEKDSAKDLVLTESEEA 154
LR L +++ + D + RL V K H +FG S ++ +++
Sbjct: 468 -LRVLS-GSISERIVDC---IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 155 --IIPVLKTIWAGILNSEVSEDTDFFQ 179
+ + I AG L+ +D F Q
Sbjct: 523 TGV----RVIVAGTLDINPDDDYGFKQ 545
Score = 33.9 bits (77), Expect = 0.24
Identities = 47/299 (15%), Positives = 109/299 (36%), Gaps = 85/299 (28%)
Query: 305 WSRLSARDRGHLMFKLADLMEQNKEELATIESLDSG-AVYTLALKTHVGMSIDTWKYFAG 363
W+R + F + D++ N L + G + + + M +T
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR----ENYSAMIFETIVDGKL 1701
Query: 364 WCDKILGSTIPIAHARPNSNFTFTKREPIGVCGLITPWNY--PLMML----------SWK 411
+KI ++++TF R G+ T + P + L S
Sbjct: 1702 KTEKIFKEI-----NEHSTSYTF--RSEKGLLSA-T--QFTQPALTLMEKAAFEDLKSKG 1751
Query: 412 MAPCLA--AGNTVVMKPS--EVSPLTALKLAE-LSVRAGFPKGVINILPGTGAVTGEAIS 466
+ P A AG+ S E + L + LA+ +S+ + ++ ++ G A+
Sbjct: 1752 LIPADATFAGH------SLGEYAALAS--LADVMSIES-----LVEVVFYRGMTMQVAVP 1798
Query: 467 QHLKIRKVGFTGSTVTGM------KIMKSAAESNLKKVSLELGGKSPLVIFDD----YNL 516
+ G + GM ++ S ++ L+ V +G ++ ++ YN+
Sbjct: 1799 R-------DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV---EIVNYNV 1848
Query: 517 DKAVRMSMGGVFFNKGENCISAGRIF-VD--SNIYDAF-LEKVVTEVKKMNHKAHLDKL 571
+ + ++AG + +D +N+ + L+K+ ++ ++ L+++
Sbjct: 1849 E--------------NQQYVAAGDLRALDTVTNVLNFIKLQKI--DIIELQKSLSLEEV 1891
Score = 30.4 bits (68), Expect = 2.6
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 24/92 (26%)
Query: 637 FINTY-NKTDV---AAPFGGFKQSGFGKDLDINKAMYFVDKIDSGTVFINTYN------- 685
F N Y D+ AA + K ++ K Y +I + F N
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN-YITARIMAKRPFDKKSNSALFRAV 149
Query: 686 ---KTDVAAPFGGFKQSG-----FGKDLDNLY 709
+ A FGG Q G F ++L +LY
Sbjct: 150 GEGNAQLVAIFGG--Q-GNTDDYF-EELRDLY 177
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Length = 317
Score = 50.6 bits (122), Expect = 7e-07
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 13 IKFNLKGEEIHNFIRGLDSSPGASTVLNGIEVKVFASSMWEDANIEGTPVTVEGSDTPAI 72
I + GEE++N IRGL+ P A T L G VKV+ T+ +
Sbjct: 215 IDWTKTGEEVYNHIRGLNPWPVAYTTLAGQVVKVWWGEK-VPVTKSAEAGTIVAIE---- 269
Query: 73 LHPDGLLF-TGSDG 85
DG + TG++
Sbjct: 270 --EDGFVVATGNET 281
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid; 1.89A
{Vibrio cholerae}
Length = 318
Score = 47.5 bits (114), Expect = 8e-06
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 13 IKFNLKGEEIHNFIRGLDSSPGASTVLNGIEVKVFASSMWEDANIEGTPVTV 64
I ++ I IR + P + + +KV+ + + E + TP T+
Sbjct: 218 INWSDAATHIERCIRAFNPWPMSHFEVAENSIKVWQARV-ETRAVTQTPGTI 268
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation
initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1
c.65.1.1 PDB: 2fmt_A* 3r8x_A
Length = 314
Score = 47.1 bits (113), Expect = 1e-05
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 13 IKFNLKGEEIHNFIRGLDSSPGASTVLNGIEVKVFASSMWEDANIEGTPVTVEGSDTPAI 72
I ++L ++ IR + P + + G VKV+ +S+ D P T+ ++ I
Sbjct: 214 IDWSLSAAQLERCIRAFNPWPMSWLEIEGQPVKVWKASV-IDTATNAAPGTILEANKQGI 272
Query: 73 L 73
Sbjct: 273 Q 273
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A
{Coxiella burnetii}
Length = 314
Score = 46.3 bits (111), Expect = 2e-05
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 13 IKFNLKGEEIHNFIRGLDSSPGASTVLNGIEVKVFASSMWEDANIEGTPVTVEGSDTPAI 72
I + EI +R + +P A T G ++++ +++ D + P + +D I
Sbjct: 213 IDWRKSAVEIARQVRAFNPTPIAFTYFEGQPMRIWRATV-VDEKTDFEPGVLVDADKKGI 271
Query: 73 L 73
Sbjct: 272 S 272
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 44.6 bits (106), Expect = 9e-05
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 13 IKFNLKGEEIHNFIRGL-DSSPGASTVLNGIEVKVFASSMWEDANIEGTPVTV 64
++++ +HN +R + D PGA + + + V++S + + P +V
Sbjct: 208 LEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRV-HPHASKAQPGSV 259
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis,
methyltransferase; HET: FON U5P; 1.2A {Escherichia coli}
SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Length = 305
Score = 43.6 bits (104), Expect = 1e-04
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 13 IKFNLKGEEIHNFIRGL-DSSPGASTVLNGIEVKVFASSMWEDANIEGTPVTV 64
++++ +HN +R + D PGA + + + V++S + + P +V
Sbjct: 208 LEWHKPASVLHNMVRAVADPWPGAFSYVGNQKFTVWSSRV-HPHASKAQPGSV 259
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO
structural genomics, PSI, protein structure initiative,
secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1
c.65.1.1
Length = 260
Score = 42.7 bits (101), Expect = 2e-04
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 13 IKFNLKGEEIHNFIRGLDSS--PGASTVLNGIEVKVFASSMWED 54
I + E+I+++IR LD P A ++ +SM
Sbjct: 202 ISPDFDLEKIYDYIRMLDGEGYPRAFIKYGKYRLEFSRASMKNG 245
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown
function, ATC, S genomics, PSI-2, protein structure
initiative; NMR {Agrobacterium tumefaciens} SCOP:
a.28.1.1
Length = 105
Score = 36.5 bits (84), Expect = 0.004
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 169 SEVSEDTDFFQSGAGSMDVVRLIEEIKENLQITLQNEDVLMSS 211
++++ D + +G S V+L+ I+E I + + S
Sbjct: 42 DTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKS 84
>3tej_A Enterobactin synthase component F; nonribosomal peptide,
thioesterase, carrier domain, ATP- BIN enterobactin
biosynthesis, ION transport, iron; HET: UF0; 1.90A
{Escherichia coli} PDB: 2roq_A
Length = 329
Score = 37.0 bits (86), Expect = 0.017
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 149 TESEEAIIPVLKTIWAGILN-SEVSEDTDFFQSGAGSMDVVRLIEEIKENLQITL 202
SE + ++ +L D DFF G + ++L ++ + +
Sbjct: 10 AGSETI----IAAAFSSLLGCDVQDADADFFALGGHXLLAMKLAAQLSRQVARQV 60
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein;
four-helix bundle, modular enzyme, domain, flexible
region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB:
2gdw_A 2gdx_A 2gdy_A 2k2q_A
Length = 91
Score = 33.3 bits (77), Expect = 0.042
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 149 TESEEAIIPVLKTIWAGILNSE-VSEDTDFFQSGAGSMDVVRLIEEIKENLQITLQNEDV 207
E + IW +L + +FFQ G S+ + + ++ Q+ ++
Sbjct: 13 NAVESKLA----EIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQV-----EL 63
Query: 208 LMSSVF 213
+ +F
Sbjct: 64 PLKVLF 69
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 35.7 bits (83), Expect = 0.058
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 149 TESEEAIIPVLKTIWAGILNSE-VSEDTDFFQSGAGSMDVVRLIEEIKENLQITL 202
E EE + IW+ +L + + DFF G ++ + IK+ L I L
Sbjct: 971 NEMEET----IAQIWSEVLGRKQIGIHDDFFALGGHALKAMTAASRIKKELGIDL 1021
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
biosynthesis, condensatio domain, peptide bond
formation, ligase; 1.85A {Brevibacillus brevis}
Length = 520
Score = 34.4 bits (80), Expect = 0.11
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 149 TESEEAIIPVLKTIWAGILNSE-VSEDTDFFQSGAGSMDVVRLIEEIKENLQITL 202
+ E L +W +LN V DFF G S+ +R++ + Q+ +
Sbjct: 9 SVWEAR----LAQVWEQVLNVPQVGALDDFFALGGHSLRAMRVLSSMHNEYQVDI 59
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 32.6 bits (75), Expect = 0.50
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 597 DVDAVIKRANSTEYGLASG----IFTSDINKAMYFVDKIDSGTVFIN 639
+V I + +YG S I T D N A +F+ +DS VF N
Sbjct: 348 NVQDAIDHIH--KYG--SSHTDVIVTEDENTAEFFLQHVDSACVFWN 390
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 32.7 bits (75), Expect = 0.51
Identities = 17/135 (12%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 540 RIFVDSNIY-DAFLEKVVTEVKKMNHKAHLDKLIDYCEKAKSEGARLLIGGKRLDRPGDV 598
+ +S+I L+K + +++ + + K GA ++ + D
Sbjct: 236 LLVWESDIVRAGLLQKALALLEQSP-------HVFRPREGKYAGALVMDASPVIPGLEDP 288
Query: 599 DAVIKRAN-STEYGLASGIFTSDINKAMYFVDKIDSGTVFINTYNKTDVAAPFGGFKQSG 657
V+ R+N + Y + DI + + ++ ++
Sbjct: 289 FFVLLRSNGTATY------YAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAY 342
Query: 658 FGKDLDINKAMYFVD 672
K + + VD
Sbjct: 343 TPK---AEETINVVD 354
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 31.8 bits (73), Expect = 0.80
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 597 DVDAVIKRANSTEYGLASG----IFTSDINKAMYFVDKIDSGTVFIN 639
++ I+ N + S I T + A F+ +DS V+ N
Sbjct: 353 STESAIQHIN--THS--SRHTDAIVTENKANAEKFMKGVDSSGVYWN 395
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.3
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 328 KEELATIE-SL-----DSGAVYTLALKTHV 351
K+ L ++ SL DS LA+K +
Sbjct: 19 KQALKKLQASLKLYADDSAP--ALAIKATM 46
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II
acid synthesis pathway; 2.51A {Staphylococcus aureus}
Length = 101
Score = 29.0 bits (65), Expect = 1.5
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 140 KDSAKDLVLTESEEAIIPVLKTIWA---GILNSEVSEDTDFFQS-GAGSMDVVRLIEEIK 195
++L + +K I G+ +V+ED F GA S+D+ L+ E++
Sbjct: 12 DLGTENLYFQSNAMENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELE 71
Query: 196 ENLQITLQNEDV 207
+ + +E+
Sbjct: 72 DEFGTEIPDEEA 83
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Length = 427
Score = 30.6 bits (70), Expect = 1.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 616 IFTSDINKAMYFVDKIDSGTVFIN 639
I T + + A FV +ID+ V++N
Sbjct: 354 ILTENYSNAKKFVSEIDAAAVYVN 377
>2amw_A Hypothetical protein NE2163; all helical protein, structural
genomics, PSI, protein structure initiative; NMR
{Nitrosomonas europaea}
Length = 83
Score = 28.3 bits (63), Expect = 1.8
Identities = 7/50 (14%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 169 SEVSEDTDFFQSGAG--SMDVVRLIEEIKENLQITLQNEDVLMSSVFRDF 216
++ + + SM VV +I ++E ++ ++++ + F
Sbjct: 22 HTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEI-SAQTFETL 70
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant;
1.83A {Mycobacterium tuberculosis}
Length = 113
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 151 SEEAIIPVLKTIWAGILN--SEVSEDTDFFQS-GAGSMDVVRLIEEIKENLQITLQNEDV 207
+ A+ + IL ++ + G S+ + +LI E+++ I + D
Sbjct: 23 FQGAMEEAINATIQRILRTDRGITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDA 82
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics,
NPPSFA, national proje protein structural and functional
analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Length = 77
Score = 28.0 bits (63), Expect = 2.4
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 165 GILNSEVSEDTDFFQS-GAGSMDVVRLIEEIKENLQITLQNEDV 207
G+ +++ + F + GA S+DVV LI +E I + +ED
Sbjct: 15 GVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDA 58
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro
structure initiative, PSI; 2.00A {Thermotoga maritima}
SCOP: a.28.1.1
Length = 100
Score = 28.6 bits (64), Expect = 2.5
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 165 GILNSEVSEDTDFFQSGAGSMDVVRLIEEIKENLQITLQNED 206
G V E+ F + G S+DV+ L+ ++ + +++E+
Sbjct: 31 GKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEE 72
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid
biosynthesis, L synthesis, transit peptide, biosynthetic
protein; HET: PNS; 1.80A {Plasmodium falciparum} PDB:
3gzl_A* 2fq0_A* 2fq2_A*
Length = 81
Score = 27.6 bits (62), Expect = 3.2
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 165 GILNSEVSEDTDFFQS-GAGSMDVVRLIEEIKENLQITLQNEDV 207
+ ++ +++F + GA S+D+V LI ++E +T+ ++D
Sbjct: 19 SVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDA 62
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine,
lipid transport; NMR {Streptomyces coelicolor} PDB:
2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Length = 82
Score = 27.3 bits (61), Expect = 4.1
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 151 SEEAIIPVLKTIWA---GILNSEVSEDTDFFQS-GAGSMDVVRLIEEIKENLQITLQNED 206
++E I+ L I GI +V D F S+ +V ++ +E + + ++D
Sbjct: 4 TQEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDD 63
Query: 207 V 207
V
Sbjct: 64 V 64
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural
genomics center for infectious disease, lipid binding
protein; NMR {Brucella melitensis}
Length = 79
Score = 27.2 bits (61), Expect = 4.6
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 165 GILNSEVSEDTDFFQS-GAGSMDVVRLIEEIKENLQITLQNEDV 207
G+ +V+E F GA S+D V L+ +E + + ++
Sbjct: 18 GVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAA 61
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia
prowazekii str}
Length = 81
Score = 27.3 bits (61), Expect = 4.9
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 165 GILNSEVSEDTDFFQS-GAGSMDVVRLIEEIKENLQITLQNEDV 207
+ ++ D+ F + A S+D V L+ I+ I + +++
Sbjct: 20 NKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEA 63
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura
genomics center for infectious disease, ssgcid, lipid
bindi protein; NMR {Borrelia burgdorferi}
Length = 84
Score = 27.3 bits (61), Expect = 5.3
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 165 GILNSEVSEDTDFFQS-GAGSMDVVRLIEEIKENLQITLQNEDV 207
E++ D+ F + A S+D+ L+ ++E + +
Sbjct: 23 DKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEA 66
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 29.1 bits (66), Expect = 5.3
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 402 NYPLMMLSWKMAPCLAAGNTVVMKPSEVSPLTALKLAE 439
NY + AG TVV+ S L E
Sbjct: 237 NYAMSSPG--SLGVFLAGGTVVLAAD-PSATLCFPLIE 271
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid
transport; HET: PSR; 1.20A {Escherichia coli} SCOP:
a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A
2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Length = 78
Score = 26.8 bits (60), Expect = 6.1
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 165 GILNSEVSEDTDFFQS-GAGSMDVVRLIEEIKENLQITLQNED 206
G+ EV+ + F + GA S+D V L+ ++E + +E+
Sbjct: 17 GVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEE 59
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450
fold, carrier protein, 4-helix bundle, cytoplasm; HET:
ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1
PDB: 3ejd_A* 3eje_A*
Length = 97
Score = 27.0 bits (60), Expect = 6.7
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 165 GILNSEVSEDTDFFQS-GAGSMDVVRLIEEIKENLQITLQNED 206
G+ EV+ + F + GA S+D V L+ ++E + +E+
Sbjct: 36 GVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEE 78
>1x3o_A Acyl carrier protein; structural genomics, riken structural
genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus
thermophilus}
Length = 80
Score = 26.5 bits (59), Expect = 7.2
Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 165 GILNSEVSEDTDFFQS-GAGSMDVVRLIEEIKENLQITLQNED 206
+ +V+ + F + GA S+D V LI +++ + + +E+
Sbjct: 19 QVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEE 61
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty
acid biosynthesis, lipid synthesis, phosphopantethein
transit peptide; 1.90A {Toxoplasma gondii}
Length = 82
Score = 26.5 bits (59), Expect = 8.2
Identities = 9/44 (20%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 165 GILNSEVSEDTDFFQS-GAGSMDVVRLIEEIKENLQITLQNEDV 207
G+ + ++ +++F + A S+D V L+ +E +++ +E+
Sbjct: 21 GVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEA 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.388
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,774,655
Number of extensions: 679207
Number of successful extensions: 1789
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1484
Number of HSP's successfully gapped: 168
Length of query: 709
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 609
Effective length of database: 3,909,693
Effective search space: 2381003037
Effective search space used: 2381003037
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)