BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15159
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 82/180 (45%), Gaps = 33/180 (18%)
Query: 68 KGIDLAIDESSFTGETEPATKVTSPMLKTNG-HTSMRNIAFMGTLVRCGNGKAQLNHPED 126
K L +D+S TGE+ K T P+ + +N+ F GT + G
Sbjct: 169 KSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAL-------- 220
Query: 127 YTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLS--LYS 184
G+V TG +E G++ M A E KTPLQ+ +D G QLS +
Sbjct: 221 --------------GIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL 266
Query: 185 FCIIGLIMLLGWFQG--------RPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
C+ ++ +G F R + F I V+LAVAAIPEGLP V+T LALG R+
Sbjct: 267 ICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRM 326
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 22 LAIDESSFTGETEPATKVTSPMLKTNG-HTSMRNIAFMGTLVRCGNGKGI 70
L +D+S TGE+ K T P+ + +N+ F GT + G GI
Sbjct: 173 LRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGI 222
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 82/180 (45%), Gaps = 33/180 (18%)
Query: 68 KGIDLAIDESSFTGETEPATKVTSPMLKTNG-HTSMRNIAFMGTLVRCGNGKAQLNHPED 126
K L +D+S TGE+ K T P+ + +N+ F GT + G
Sbjct: 170 KSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAL-------- 221
Query: 127 YTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLS--LYS 184
G+V TG +E G++ M A E KTPLQ+ +D G QLS +
Sbjct: 222 --------------GIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL 267
Query: 185 FCIIGLIMLLGWFQG--------RPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
C+ ++ +G F R + F I V+LAVAAIPEGLP V+T LALG R+
Sbjct: 268 ICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRM 327
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 22 LAIDESSFTGETEPATKVTSPMLKTNG-HTSMRNIAFMGTLVRCGNGKGI 70
L +D+S TGE+ K T P+ + +N+ F GT + G GI
Sbjct: 174 LRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGI 223
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 82/180 (45%), Gaps = 33/180 (18%)
Query: 68 KGIDLAIDESSFTGETEPATKVTSPMLKTNG-HTSMRNIAFMGTLVRCGNGKAQLNHPED 126
K L +D+S TGE+ K T P+ + +N+ F GT + G
Sbjct: 169 KSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAL-------- 220
Query: 127 YTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLS--LYS 184
G+V TG +E G++ M A E KTPLQ+ +D G QLS +
Sbjct: 221 --------------GIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL 266
Query: 185 FCIIGLIMLLGWFQG--------RPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
C+ ++ +G F R + F I V+LAVAAIPEGLP V+T LALG R+
Sbjct: 267 ICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRM 326
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 22 LAIDESSFTGETEPATKVTSPMLKTNG-HTSMRNIAFMGTLVRCGNGKGI 70
L +D+S TGE+ K T P+ + +N+ F GT + G GI
Sbjct: 173 LRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGI 222
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 82/180 (45%), Gaps = 33/180 (18%)
Query: 68 KGIDLAIDESSFTGETEPATKVTSPMLKTNG-HTSMRNIAFMGTLVRCGNGKAQLNHPED 126
K L +D+S TGE+ K T P+ + +N+ F GT + G
Sbjct: 169 KSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAI-------- 220
Query: 127 YTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLS--LYS 184
G+V TG +E G++ M A E KTPLQ+ +D G QLS +
Sbjct: 221 --------------GIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL 266
Query: 185 FCIIGLIMLLGWFQG--------RPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
C+ ++ +G F R + F I V+LAVAAIPEGLP V+T LALG R+
Sbjct: 267 ICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRM 326
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 22 LAIDESSFTGETEPATKVTSPMLKTNG-HTSMRNIAFMGTLVRCGNGKGI 70
L +D+S TGE+ K T P+ + +N+ F GT + G GI
Sbjct: 173 LRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGI 222
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 36/169 (21%)
Query: 74 IDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINY 133
+D SS TGE+EP T+ SP RNIAF T C G A
Sbjct: 188 VDNSSLTGESEPQTR--SPDFTNENPLETRNIAFFST--NCVEGTA-------------- 229
Query: 134 KERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMD-----ILGTQLSL-YSFCI 187
+G+VV TG+++ G + + E +TP+ ++ I G + L SF I
Sbjct: 230 ------RGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFI 283
Query: 188 IGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
+ LI+ W + +F IG+ VA +PEGL VTV L L R+
Sbjct: 284 LSLILEYTWLEAV----IFLIGI--IVANVPEGLLATVTVCLTLTAKRM 326
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 24 IDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKGI 70
+D SS TGE+EP T+ SP RNIAF T G +GI
Sbjct: 188 VDNSSLTGESEPQTR--SPDFTNENPLETRNIAFFSTNCVEGTARGI 232
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 75/169 (44%), Gaps = 36/169 (21%)
Query: 74 IDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINY 133
+D SS TGE+EP T+ SP RNIAF T C G A
Sbjct: 182 VDNSSLTGESEPQTR--SPDFTNENPLETRNIAFFST--NCVEGTA-------------- 223
Query: 134 KERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMD-----ILGTQLSL-YSFCI 187
+G+VV TG+++ G + + E +TP+ ++ I G + L SF I
Sbjct: 224 ------RGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFI 277
Query: 188 IGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
+ LI+ W + +F IG+ VA +PEGL VTV L L R+
Sbjct: 278 LSLILEYTWLEAV----IFLIGI--IVANVPEGLLATVTVCLTLTAKRM 320
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 24 IDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKGI 70
+D SS TGE+EP T+ SP RNIAF T G +GI
Sbjct: 182 VDNSSLTGESEPQTR--SPDFTNENPLETRNIAFFSTNCVEGTARGI 226
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 32/167 (19%)
Query: 74 IDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINY 133
+D SS TGE+EP T+ SP RNIAF T+ C G AQ
Sbjct: 223 VDNSSLTGESEPQTR--SPECTHESPLETRNIAFFSTM--CLEGTAQ------------- 265
Query: 134 KERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTP----LQKSMDILGTQLSLYSFCIIG 189
G+VVNTG+++ G + + E KTP ++ +DI+ L+
Sbjct: 266 -------GLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFI 318
Query: 190 LIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
+ M +G+ L +++ VA +PEGL VTV L+L R+
Sbjct: 319 VAMCIGY----TFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRL 361
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 24 IDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKGI 70
+D SS TGE+EP T+ SP RNIAF T+ G +G+
Sbjct: 223 VDNSSLTGESEPQTR--SPECTHESPLETRNIAFFSTMCLEGTAQGL 267
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 48/208 (23%)
Query: 47 NGHTSMRNIAFM--GTLVRCGNGKGI--DLAI--------DESSFTGETEPATKVTSPML 94
+G S N F+ G LV G I DL I D SS TGE+EP T+ SP
Sbjct: 179 DGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTR--SPEF 236
Query: 95 KTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGE 154
+ RNIAF T C G A +GVVV TG+++ G
Sbjct: 237 SSENPLETRNIAFFST--NCVEGTA--------------------RGVVVYTGDRTVMGR 274
Query: 155 VFKMMQAEEAPKTPLQ---KSMDILGTQLSLY---SFCIIGLIMLLGWFQGRPVLDMFTI 208
+ + E +TP+ + + T ++++ SF I+ LI+ W + +F I
Sbjct: 275 IATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYSWLEAV----IFLI 330
Query: 209 GVSLAVAAIPEGLPIVVTVTLALGVMRI 236
G+ VA +PEGL VTV L L R+
Sbjct: 331 GI--IVANVPEGLLATVTVCLTLTAKRM 356
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 24 IDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKGI 70
+D SS TGE+EP T+ SP + RNIAF T G +G+
Sbjct: 218 VDNSSLTGESEPQTR--SPEFSSENPLETRNIAFFSTNCVEGTARGV 262
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 46/91 (50%)
Query: 142 VVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRP 201
V+ TG+ + G ++ A + ++ +GT L + + ++ + +++ P
Sbjct: 259 VITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSFYRSNP 318
Query: 202 VLDMFTIGVSLAVAAIPEGLPIVVTVTLALG 232
++ + +++ + +P GLP VVT T+A+G
Sbjct: 319 IVQILEFTLAITIIGVPVGLPAVVTTTMAVG 349
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 48/176 (27%)
Query: 68 KGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDY 127
+G L +D+S+ TGE+ P TK H F G+ + G +A
Sbjct: 170 EGDPLKVDQSALTGESLPVTK----------HPGQE--VFSGSTCKQGEIEA-------- 209
Query: 128 TSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCI 187
VV+ TG + FG+ ++ + QK + +G +FCI
Sbjct: 210 --------------VVIATGVHTFFGKAAHLVDSTNQVGH-FQKVLTAIG------NFCI 248
Query: 188 ----IGL---IMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
IG+ I+++ Q R D + L + IP +P V++VT+A+G R+
Sbjct: 249 CSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL 304
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 218 PEGLPIVVTVTLALGVMRI 236
PEGLP V+T LALG R+
Sbjct: 20 PEGLPAVITTCLALGTRRM 38
>pdb|2VOY|G Chain G, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 36
Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 163 EAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWF 197
E KTPLQ+ +D G QLS +I LI + W
Sbjct: 1 EQDKTPLQQKLDEFGEQLSK----VISLICVAVWL 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,791,650
Number of Sequences: 62578
Number of extensions: 282892
Number of successful extensions: 770
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 22
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)