Query psy15159
Match_columns 238
No_of_seqs 208 out of 1266
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 22:05:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0202|consensus 100.0 1.9E-37 4.2E-42 294.5 15.4 193 23-238 96-315 (972)
2 PRK10517 magnesium-transportin 100.0 3E-35 6.6E-40 292.5 19.5 193 23-238 140-354 (902)
3 TIGR01522 ATPase-IIA2_Ca golgi 100.0 5.8E-35 1.2E-39 290.9 20.0 193 23-238 98-307 (884)
4 TIGR01647 ATPase-IIIA_H plasma 100.0 1.4E-34 3.1E-39 283.7 18.5 181 23-238 73-269 (755)
5 COG2217 ZntA Cation transport 100.0 5.5E-35 1.2E-39 281.9 14.1 195 3-238 178-388 (713)
6 TIGR01524 ATPase-IIIB_Mg magne 100.0 2.6E-34 5.6E-39 285.4 18.9 191 24-238 107-319 (867)
7 TIGR01523 ATPase-IID_K-Na pota 100.0 8.9E-34 1.9E-38 285.5 18.9 191 23-238 99-342 (1053)
8 PRK15122 magnesium-transportin 100.0 8E-33 1.7E-37 275.4 19.5 192 23-238 129-352 (903)
9 COG0474 MgtA Cation transport 100.0 6.8E-33 1.5E-37 276.3 18.6 193 23-238 121-331 (917)
10 PRK10671 copA copper exporting 100.0 7.4E-33 1.6E-37 274.6 17.0 195 3-238 290-500 (834)
11 TIGR01511 ATPase-IB1_Cu copper 100.0 7.6E-33 1.6E-37 263.9 15.3 188 3-238 58-260 (562)
12 PRK11033 zntA zinc/cadmium/mer 100.0 2E-32 4.4E-37 268.0 16.4 195 3-238 210-419 (741)
13 TIGR01116 ATPase-IIA1_Ca sarco 100.0 5E-32 1.1E-36 270.6 18.0 193 23-238 54-272 (917)
14 TIGR01106 ATPase-IIC_X-K sodiu 100.0 6.1E-32 1.3E-36 271.8 18.6 191 23-238 122-327 (997)
15 TIGR01512 ATPase-IB2_Cd heavy 100.0 3E-32 6.6E-37 258.6 15.1 193 4-238 23-229 (536)
16 PF00122 E1-E2_ATPase: E1-E2 A 100.0 4.1E-31 9E-36 224.8 15.9 184 25-238 16-217 (230)
17 TIGR01525 ATPase-IB_hvy heavy 100.0 2.1E-31 4.6E-36 253.9 14.9 193 3-238 22-229 (556)
18 TIGR01517 ATPase-IIB_Ca plasma 100.0 1.1E-30 2.4E-35 261.7 17.8 182 23-238 146-359 (941)
19 TIGR01657 P-ATPase-V P-type AT 100.0 1.5E-30 3.3E-35 263.1 18.5 190 25-238 213-431 (1054)
20 PRK01122 potassium-transportin 100.0 1.9E-29 4.1E-34 243.2 18.2 181 24-238 85-281 (679)
21 KOG0208|consensus 100.0 1.1E-29 2.4E-34 244.5 14.5 193 29-238 235-451 (1140)
22 KOG0207|consensus 100.0 6.3E-31 1.4E-35 252.5 3.8 190 3-233 345-560 (951)
23 PRK14010 potassium-transportin 100.0 7.9E-29 1.7E-33 238.7 16.8 180 25-238 86-281 (673)
24 TIGR01497 kdpB K+-transporting 100.0 2.7E-28 5.9E-33 234.9 17.7 181 24-238 86-282 (675)
25 TIGR01494 ATPase_P-type ATPase 100.0 1.3E-27 2.9E-32 225.1 15.3 178 26-238 17-213 (499)
26 KOG0204|consensus 99.9 5.9E-28 1.3E-32 230.1 9.8 182 24-238 201-418 (1034)
27 KOG0205|consensus 99.9 4.1E-25 8.8E-30 206.0 8.5 186 17-238 109-310 (942)
28 KOG0203|consensus 99.9 1.8E-24 3.9E-29 206.3 8.4 191 23-238 144-349 (1019)
29 KOG0209|consensus 99.8 2.7E-21 5.8E-26 184.2 4.8 194 31-238 240-462 (1160)
30 TIGR01652 ATPase-Plipid phosph 99.7 1.1E-17 2.3E-22 170.1 12.8 160 48-233 97-327 (1057)
31 COG2216 KdpB High-affinity K+ 99.7 5.8E-16 1.2E-20 142.3 14.1 197 4-237 68-281 (681)
32 PLN03190 aminophospholipid tra 99.3 4.1E-11 9E-16 122.7 14.0 164 48-236 182-424 (1178)
33 KOG0210|consensus 97.6 0.00035 7.5E-09 67.6 9.3 154 48-228 174-376 (1051)
34 KOG0206|consensus 93.0 0.46 1E-05 49.4 8.6 118 49-191 128-294 (1151)
35 PF06645 SPC12: Microsomal sig 70.4 19 0.00041 25.3 5.8 24 167-190 3-26 (76)
36 TIGR00739 yajC preprotein tran 61.4 9.5 0.00021 27.4 2.9 26 53-79 36-62 (84)
37 TIGR01494 ATPase_P-type ATPase 58.8 64 0.0014 30.5 8.9 147 47-234 56-213 (499)
38 KOG4112|consensus 44.8 95 0.0021 22.9 5.7 25 164-188 15-39 (101)
39 PRK11479 hypothetical protein; 40.3 20 0.00043 31.6 2.1 19 48-67 58-76 (274)
40 COG1862 YajC Preprotein transl 38.7 38 0.00082 25.1 3.0 25 53-78 42-67 (97)
41 PRK05886 yajC preprotein trans 38.1 35 0.00076 25.8 2.8 15 53-68 37-51 (109)
42 PF02699 YajC: Preprotein tran 37.4 18 0.0004 25.7 1.1 30 53-83 35-65 (82)
43 PRK05585 yajC preprotein trans 36.8 31 0.00066 25.9 2.3 23 53-76 51-74 (106)
44 PF03739 YjgP_YjgQ: Predicted 35.8 2.2E+02 0.0048 25.2 8.2 39 199-237 38-76 (354)
45 TIGR01512 ATPase-IB2_Cd heavy 32.4 2.9E+02 0.0063 26.5 8.8 68 167-235 163-230 (536)
46 PF12304 BCLP: Beta-casein lik 31.4 2.8E+02 0.0061 23.0 7.2 84 153-236 23-110 (188)
47 PRK13747 putative mercury resi 27.6 50 0.0011 23.2 1.9 16 212-227 23-38 (78)
48 TIGR01524 ATPase-IIIB_Mg magne 26.9 3.3E+02 0.0073 28.0 8.6 34 201-234 286-319 (867)
49 TIGR01522 ATPase-IIA2_Ca golgi 26.6 3.2E+02 0.0068 28.2 8.3 34 202-235 275-308 (884)
50 PF09926 DUF2158: Uncharacteri 26.6 39 0.00084 22.1 1.2 11 57-67 2-12 (53)
51 COG3838 VirB2 Type IV secretor 25.6 2.5E+02 0.0053 21.2 5.5 48 165-212 38-86 (108)
52 TIGR01106 ATPase-IIC_X-K sodiu 25.3 3.3E+02 0.0071 28.5 8.2 66 168-233 261-326 (997)
53 PRK06531 yajC preprotein trans 25.1 89 0.0019 23.8 3.1 15 53-68 35-49 (113)
54 PRK15071 lipopolysaccharide AB 23.2 3.9E+02 0.0085 23.8 7.5 38 201-238 46-83 (356)
55 PF05052 MerE: MerE protein; 22.7 70 0.0015 22.4 1.9 16 212-227 23-38 (75)
56 TIGR02219 phage_NlpC_fam putat 21.8 48 0.001 25.6 1.1 18 48-66 70-87 (134)
57 PF05899 Cupin_3: Protein of u 21.8 68 0.0015 22.0 1.8 24 52-76 45-68 (74)
58 PF00467 KOW: KOW motif; Inte 21.6 1.1E+02 0.0023 17.4 2.3 21 58-78 1-26 (32)
No 1
>KOG0202|consensus
Probab=100.00 E-value=1.9e-37 Score=294.54 Aligned_cols=193 Identities=46% Similarity=0.691 Sum_probs=174.5
Q ss_pred eeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCc----------ceeeeeeccccccCCcceee
Q psy15159 23 AIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNG----------KGIDLAIDESSFTGETEPAT 87 (238)
Q Consensus 23 ~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G----------~~~~~~vdES~LTGEs~Pv~ 87 (238)
+|||+++++++++|+++.|++|+| + +++++++| ||||+|.++-| +..++++|||.|||||.||.
T Consensus 96 ~~QEy~aEkalEaLk~l~p~~~~V~R~gk~~~i~A~eL-VPGDiV~l~vGDkVPADlRl~e~~sl~iDeS~LTGEs~pv~ 174 (972)
T KOG0202|consen 96 FVQEYNAEKALEALKELVPPMAHVLRSGKLQHILAREL-VPGDIVELKVGDKIPADLRLIEAKSLRIDESSLTGESEPVS 174 (972)
T ss_pred eeeehhhHHHHHHHHhcCCccceEEecCcccceehhcc-CCCCEEEEecCCccccceeEEeeeeeeeecccccCCccccc
Confidence 789999999999999999999998 3 89999999 99999999999 34478999999999999999
Q ss_pred ccCCCCC--CCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCC
Q psy15159 88 KVTSPML--KTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAP 165 (238)
Q Consensus 88 K~~~~~~--~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~ 165 (238)
|.....+ ++.+..+++|++|+||.|..|.+ +++|+.||.+|.+|+|.+++.+.+.+
T Consensus 175 K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a----------------------~GIVi~TG~nTeiG~I~~~m~~~e~~ 232 (972)
T KOG0202|consen 175 KDTDAVPKDENADVQDKKNIAFSGTLVVAGRA----------------------KGIVIGTGLNTEIGKIFKMMQATESP 232 (972)
T ss_pred ccCccccCCCCCccccceeeEeecceeecCce----------------------eEEEEeccccchHHHHHHHHhccCCC
Confidence 9887766 34679999999999999999999 99999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHhc-----C---CCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q psy15159 166 KTPLQKSMDILGTQLS-LYSFCIIGLIML-LGWFQ-----G---RPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMR 235 (238)
Q Consensus 166 ~~~l~~~~~~~~~~l~-~~~~~~~~~~~~-~~~~~-----~---~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~r 235 (238)
++|||+.+|.+..+++ .++++.....++ +.|+. | +.+.+.|.+++++.|+++|+|||+.++++++.|.+|
T Consensus 233 kTPLqk~ld~~G~qLs~~is~i~v~v~~~nig~f~~p~~~g~~fk~~~~~f~IaVsLAVAAIPEGLPaVvT~tLALG~~r 312 (972)
T KOG0202|consen 233 KTPLQKKLDEFGKQLSKVISFICVGVWLLNIGHFLDPVHGGSWFKGALYYFKIAVSLAVAAIPEGLPAVVTTTLALGTRR 312 (972)
T ss_pred CCcHHHHHHHHHHHHHHHheehhhhHHHhhhhhhccccccccchhchhhhhhHHHHHHHHhccCCCcchhhhhHHHhHHH
Confidence 9999999999999999 444444444444 56666 6 577899999999999999999999999999999999
Q ss_pred hhC
Q psy15159 236 IYI 238 (238)
Q Consensus 236 l~k 238 (238)
|+|
T Consensus 313 Mak 315 (972)
T KOG0202|consen 313 MAK 315 (972)
T ss_pred HHh
Confidence 987
No 2
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=3e-35 Score=292.51 Aligned_cols=193 Identities=22% Similarity=0.357 Sum_probs=175.5
Q ss_pred eeehhhhcccchhhhhccCCCccc--c---------cccccCCceeeccEEEecCcc----------eeeeeeccccccC
Q psy15159 23 AIDESSFTGETEPATKVTSPMLKT--N---------GHTSMRNIAFMGTLVRCGNGK----------GIDLAIDESSFTG 81 (238)
Q Consensus 23 ~~~e~~~~~~~~~l~~~~~~~~~v--d---------~~i~~~~L~v~GDiv~l~~G~----------~~~~~vdES~LTG 81 (238)
++||+++++++++|+++.+++++| | ++|+++|| ||||+|.+++|+ +.++.||||+|||
T Consensus 140 ~~qe~ra~~~~~~L~~l~~~~a~ViR~g~~~~~g~~~~I~~~eL-vpGDiV~l~~Gd~IPaDg~li~g~~l~VDES~LTG 218 (902)
T PRK10517 140 FIQEARSTKAADALKAMVSNTATVLRVINDKGENGWLEIPIDQL-VPGDIIKLAAGDMIPADLRILQARDLFVAQASLTG 218 (902)
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEECCccCCCCeEEEEEHHhC-CCCCEEEECCCCEEeeeEEEEEcCceEEEecCcCC
Confidence 347889999999999999999887 5 46999999 999999999993 3357899999999
Q ss_pred CcceeeccCCCCC-CCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhh
Q psy15159 82 ETEPATKVTSPML-KTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQ 160 (238)
Q Consensus 82 Es~Pv~K~~~~~~-~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~ 160 (238)
||.||.|.+++.. ++.+..+++|++|+||.|.+|.+ +++|++||.+|++|+|.+++.
T Consensus 219 ES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~----------------------~~vV~atG~~T~~GkI~~~v~ 276 (902)
T PRK10517 219 ESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTA----------------------QAVVIATGANTWFGQLAGRVS 276 (902)
T ss_pred CCCceecccccccccccCccccccceeeCceEeeeeE----------------------EEEEEEeccccHHHHHHHHhh
Confidence 9999999998753 33567889999999999999999 999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 161 AEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
+++.+++|+|+.++++++++..++++++.++++++++.+.+|.+++.+++++++++|||+||++++++++.|++||+|
T Consensus 277 ~~~~~~t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~~~~~~~~~~l~~alsv~V~~~Pe~LP~~vt~~la~g~~~mak 354 (902)
T PRK10517 277 EQDSEPNAFQQGISRVSWLLIRFMLVMAPVVLLINGYTKGDWWEAALFALSVAVGLTPEMLPMIVTSTLARGAVKLSK 354 (902)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999999998888888888777667789999999999999999999999999999999999986
No 3
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=5.8e-35 Score=290.86 Aligned_cols=193 Identities=57% Similarity=0.872 Sum_probs=175.4
Q ss_pred eeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCcc----------eeeeeeccccccCCcceee
Q psy15159 23 AIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNGK----------GIDLAIDESSFTGETEPAT 87 (238)
Q Consensus 23 ~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G~----------~~~~~vdES~LTGEs~Pv~ 87 (238)
++||+++++++++|.++.+..++| | ++|+++|| ||||+|.+++|+ +.++.||||+|||||.|+.
T Consensus 98 ~~qe~~a~~~l~~L~~l~~~~~~ViRdg~~~~I~~~eL-v~GDiv~l~~Gd~IPaDg~ii~g~~l~VDES~LTGES~pv~ 176 (884)
T TIGR01522 98 FVQEYRSEKSLEALNKLVPPECHLIREGKLEHVLASTL-VPGDLVCLSVGDRVPADLRIVEAVDLSIDESNLTGETTPVS 176 (884)
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHC-ccCCEEEecCCCEEeeeEEEEEcCceEEEcccccCCCccee
Confidence 458889999999999999999988 5 88999999 999999999993 3368999999999999999
Q ss_pred ccCCCCCCC--CCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCC
Q psy15159 88 KVTSPMLKT--NGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAP 165 (238)
Q Consensus 88 K~~~~~~~~--~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~ 165 (238)
|.+++..++ .+..+++|++|+||.|.+|.+ +++|++||.+|.+|+|.+++++++.+
T Consensus 177 K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~----------------------~~~V~~tG~~T~~gki~~~v~~~~~~ 234 (884)
T TIGR01522 177 KVTAPIPAATNGDLAERSNIAFMGTLVRCGHG----------------------KGIVVGTGSNTEFGAVFKMMQAIEKP 234 (884)
T ss_pred cccccccccccccccccCceEEeCCEEEeeeE----------------------EEEEEEecCccHHHHHHHHhccCCCC
Confidence 998865433 456788999999999999999 99999999999999999999988889
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 166 KTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 166 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
++|+|+.+++++.++.++++++++++++++|+.+.+|.+.+.+++++++++|||+||+++|++++.|++||+|
T Consensus 235 kt~lq~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r~ak 307 (884)
T TIGR01522 235 KTPLQKSMDLLGKQLSLVSFGVIGVICLVGWFQGKDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRMSK 307 (884)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999888777777777777788889999999999999999999999999999999999986
No 4
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=1.4e-34 Score=283.72 Aligned_cols=181 Identities=25% Similarity=0.419 Sum_probs=168.2
Q ss_pred eeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCcc----------eeeeeeccccccCCcceee
Q psy15159 23 AIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNGK----------GIDLAIDESSFTGETEPAT 87 (238)
Q Consensus 23 ~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G~----------~~~~~vdES~LTGEs~Pv~ 87 (238)
++||+++++++++|+++.+++++| | ++|+++|| ||||+|.+++|+ +.++.||||+|||||.||.
T Consensus 73 ~~qe~~a~~~~~~L~~~~~~~~~V~Rdg~~~~I~~~~L-v~GDiV~l~~Gd~IPaDg~vi~g~~~~VDeS~LTGES~PV~ 151 (755)
T TIGR01647 73 FIEENKAGNAVEALKQSLAPKARVLRDGKWQEIPASEL-VPGDVVRLKIGDIVPADCRLFEGDYIQVDQAALTGESLPVT 151 (755)
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEECCEEEEEEhhhC-cCCCEEEECCCCEEeceEEEEecCceEEEcccccCCccceE
Confidence 457889999999999999999888 5 78999999 999999999993 2248999999999999999
Q ss_pred ccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCCCC
Q psy15159 88 KVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKT 167 (238)
Q Consensus 88 K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~ 167 (238)
|.+++. +|+||.|.+|++ +++|++||.+|++|+|.+++++.+..++
T Consensus 152 K~~~~~------------v~aGT~v~~G~~----------------------~~~V~~tG~~T~~g~i~~lv~~~~~~~~ 197 (755)
T TIGR01647 152 KKTGDI------------AYSGSTVKQGEA----------------------EAVVTATGMNTFFGKAAALVQSTETGSG 197 (755)
T ss_pred eccCCe------------eeccCEEEccEE----------------------EEEEEEcCCccHHHHHHHHhhccCCCCC
Confidence 998876 999999999999 9999999999999999999999888899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 168 PLQKSMDILGTQLSLYSFCIIGLIMLLGWF-QGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 168 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
|+|+.++++++++.+++++++++.++++++ .+.+|.+++.+++++++++|||+||++++++++.|++||+|
T Consensus 198 ~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak 269 (755)
T TIGR01647 198 HLQKILSKIGLFLIVLIGVLVLIELVVLFFGRGESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAK 269 (755)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHh
Confidence 999999999999999998888888888776 77899999999999999999999999999999999999986
No 5
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-35 Score=281.91 Aligned_cols=195 Identities=17% Similarity=0.253 Sum_probs=181.7
Q ss_pred hhhHHHHHhhhhhhhccceeeeehhhhcccchhhhhccCCCccc---c---cccccCCceeeccEEEecCcc--------
Q psy15159 3 SVFLTLFFTKIFRPSQGIDLAIDESSFTGETEPATKVTSPMLKT---N---GHTSMRNIAFMGTLVRCGNGK-------- 68 (238)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~l~~~~~~~~~v---d---~~i~~~~L~v~GDiv~l~~G~-------- 68 (238)
+++++|++.|.+++.+++. ++++++++|.++.|..+++ | +++|.+++ .+||+|.++|||
T Consensus 178 a~ii~l~~~G~~LE~~a~~------ra~~ai~~L~~l~p~~A~~~~~~~~~~~v~v~~v-~~GD~v~VrpGE~IPvDG~V 250 (713)
T COG2217 178 AMLIFLFLLGRYLEARAKG------RARRAIRALLDLAPKTATVVRGDGEEEEVPVEEV-QVGDIVLVRPGERIPVDGVV 250 (713)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHccCCCEEEEEecCCcEEEEEHHHC-CCCCEEEECCCCEecCCeEE
Confidence 5678888889999888877 7999999999999999966 3 78999999 999999999994
Q ss_pred -eeeeeeccccccCCcceeeccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeC
Q psy15159 69 -GIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTG 147 (238)
Q Consensus 69 -~~~~~vdES~LTGEs~Pv~K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG 147 (238)
++...+|||++||||+||.|.+|+. +|+||.+.+|.. +.+|+++|
T Consensus 251 ~~G~s~vDeS~iTGEs~PV~k~~Gd~------------V~aGtiN~~G~l----------------------~i~vt~~~ 296 (713)
T COG2217 251 VSGSSSVDESMLTGESLPVEKKPGDE------------VFAGTVNLDGSL----------------------TIRVTRVG 296 (713)
T ss_pred EeCcEEeecchhhCCCCCEecCCCCE------------EeeeEEECCccE----------------------EEEEEecC
Confidence 3467799999999999999999999 999999999999 99999999
Q ss_pred cchhhHhHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCchHHHHH
Q psy15159 148 EKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQG-RPVLDMFTIGVSLAVAAIPEGLPIVVT 226 (238)
Q Consensus 148 ~~T~~g~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~lv~~~P~~Lp~~~~ 226 (238)
.+|.+++|++++++++..|+|.|+.+||++.+|+|++++++.++|++|++.+ .+|..++++++++|+++|||+|.+++|
T Consensus 297 ~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~~~~~~a~~~a~avLVIaCPCALgLAtP 376 (713)
T COG2217 297 ADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGGGDWETALYRALAVLVIACPCALGLATP 376 (713)
T ss_pred ccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhheeeeCccHHHhHHH
Confidence 9999999999999999999999999999999999999999999999887766 589999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q psy15159 227 VTLALGVMRIYI 238 (238)
Q Consensus 227 ~~l~~~~~rl~k 238 (238)
+++..|..+.+|
T Consensus 377 ~ai~~g~g~aA~ 388 (713)
T COG2217 377 TAILVGIGRAAR 388 (713)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 6
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=2.6e-34 Score=285.38 Aligned_cols=191 Identities=23% Similarity=0.373 Sum_probs=172.2
Q ss_pred eehhhhcccchhhhhccCCCccc--------c---cccccCCceeeccEEEecCcc----------eeeeeeccccccCC
Q psy15159 24 IDESSFTGETEPATKVTSPMLKT--------N---GHTSMRNIAFMGTLVRCGNGK----------GIDLAIDESSFTGE 82 (238)
Q Consensus 24 ~~e~~~~~~~~~l~~~~~~~~~v--------d---~~i~~~~L~v~GDiv~l~~G~----------~~~~~vdES~LTGE 82 (238)
++|++++++.++|+++.++.++| | ++|+++|| ||||+|.+++|+ +.++.||||+||||
T Consensus 107 ~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eL-v~GDiV~l~~Gd~VPaDg~li~g~~l~VDES~LTGE 185 (867)
T TIGR01524 107 IQESRAERAAYALKNMVKNTATVLRVINENGNGSMDEVPIDAL-VPGDLIELAAGDIIPADARVISARDLFINQSALTGE 185 (867)
T ss_pred HHHHHHHHHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcC-CCCCEEEECCCCEEcccEEEEecCceEEEcccccCC
Confidence 47888999999999999887765 3 67999999 999999999993 33578999999999
Q ss_pred cceeeccCCCCC-CCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhc
Q psy15159 83 TEPATKVTSPML-KTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQA 161 (238)
Q Consensus 83 s~Pv~K~~~~~~-~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~ 161 (238)
|.||.|.+++.. ++.+..+++|++|+||.|.+|.+ +++|++||.+|++|||.+++.+
T Consensus 186 S~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~----------------------~~~V~~tG~~T~~gki~~~v~~ 243 (867)
T TIGR01524 186 SLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHA----------------------QAVVLATGSSTWFGSLAIAATE 243 (867)
T ss_pred CCcccccCCccccccccccccccceecCCeEEEeEE----------------------EEEEEEEcCccHHHHHHHHhhC
Confidence 999999998753 34667889999999999999999 9999999999999999999987
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 162 EEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
+..++|+|+.++++++++.+++++++.++++++++.+.+|.+.+.+++++++++|||+||++++++++.|++||+|
T Consensus 244 -~~~~t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~al~l~v~~iP~~Lp~~vt~~la~g~~~mak 319 (867)
T TIGR01524 244 -RRGQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGLMKGDWLEAFLFALAVAVGLTPEMLPMIVSSNLAKGAINMSK 319 (867)
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHHHHHheehHHHhcCCHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHh
Confidence 7778999999999999999999988888887776666789999999999999999999999999999999999986
No 7
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=8.9e-34 Score=285.50 Aligned_cols=191 Identities=23% Similarity=0.338 Sum_probs=166.6
Q ss_pred eeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCc----------ceeeeeeccccccCCcceee
Q psy15159 23 AIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNG----------KGIDLAIDESSFTGETEPAT 87 (238)
Q Consensus 23 ~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G----------~~~~~~vdES~LTGEs~Pv~ 87 (238)
++||+++++++++|+++.++.++| | ++|+++|| ||||+|.+++| ++.++.||||+|||||.||.
T Consensus 99 ~~QE~~aekal~aL~~l~~~~~~ViRdg~~~~I~a~eL-VpGDIv~L~~Gd~VPAD~rLi~~~~L~VDES~LTGES~pV~ 177 (1053)
T TIGR01523 99 FIQEYKAEKTMDSLKNLASPMAHVIRNGKSDAIDSHDL-VPGDICLLKTGDTIPADLRLIETKNFDTDEALLTGESLPVI 177 (1053)
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEeCCeeeecCHhhC-CCCCEEEECCCCEeeccEEEEEeCceEEEchhhcCCCCcee
Confidence 468999999999999999999998 5 88999999 99999999999 34579999999999999999
Q ss_pred ccCCCCC---CCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCC
Q psy15159 88 KVTSPML---KTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEA 164 (238)
Q Consensus 88 K~~~~~~---~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~ 164 (238)
|.+.... ++.+..++.|++|+||.|.+|++ +++|++||.+|.+|||.+++...+.
T Consensus 178 K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g----------------------~~vVvatG~~T~~GkIa~~~~~~~~ 235 (1053)
T TIGR01523 178 KDAHATFGKEEDTPIGDRINLAFSSSAVTKGRA----------------------KGICIATALNSEIGAIAAGLQGDGG 235 (1053)
T ss_pred ccccccccccccCCcccCCCccccCceEEeeeE----------------------EEEEEEecCccHHHHHHHHHhhhhh
Confidence 9876432 23567889999999999999999 9999999999999999998854321
Q ss_pred -----------------------------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy15159 165 -----------------------------------PKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIG 209 (238)
Q Consensus 165 -----------------------------------~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (238)
.+||+|+.+++++.++..+++++++++++..++. .+...+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~~~~~--~~~~~~~~a 313 (1053)
T TIGR01523 236 LFQRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAHKFD--VDKEVAIYA 313 (1053)
T ss_pred ccccccccccccchhhhcccccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHH
Confidence 2499999999999999998888887777655432 235777889
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 210 VSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 210 l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
++++++++|++||+.++++++.|++||+|
T Consensus 314 v~l~Va~VPegLp~~vti~La~g~~rMak 342 (1053)
T TIGR01523 314 ICLAISIIPESLIAVLSITMAMGAANMSK 342 (1053)
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999986
No 8
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=8e-33 Score=275.42 Aligned_cols=192 Identities=24% Similarity=0.375 Sum_probs=168.9
Q ss_pred eeehhhhcccchhhhhccCCCccc--c---------cccccCCceeeccEEEecCcc----------eeeeeeccccccC
Q psy15159 23 AIDESSFTGETEPATKVTSPMLKT--N---------GHTSMRNIAFMGTLVRCGNGK----------GIDLAIDESSFTG 81 (238)
Q Consensus 23 ~~~e~~~~~~~~~l~~~~~~~~~v--d---------~~i~~~~L~v~GDiv~l~~G~----------~~~~~vdES~LTG 81 (238)
++||++++++.++|+++.++.++| | ++|+++|| ||||+|.+++|+ +.++.||||+|||
T Consensus 129 ~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eL-v~GDiV~l~~Gd~IPaDg~li~g~~l~VDES~LTG 207 (903)
T PRK15122 129 FWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMREL-VPGDIVHLSAGDMIPADVRLIESRDLFISQAVLTG 207 (903)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHC-CCCCEEEECCCCEEeeeEEEEEcCceEEEccccCC
Confidence 458899999999999999998887 5 46999999 999999999993 3357899999999
Q ss_pred CcceeeccCCC-----------CCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcch
Q psy15159 82 ETEPATKVTSP-----------MLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKS 150 (238)
Q Consensus 82 Es~Pv~K~~~~-----------~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T 150 (238)
||.||.|.+.. ..++.+..+++|++|+||.|.+|++ +++|++||.+|
T Consensus 208 ES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~----------------------~~~V~atG~~T 265 (903)
T PRK15122 208 EALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTA----------------------TAVVVATGSRT 265 (903)
T ss_pred CCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeE----------------------EEEEEEecccc
Confidence 99999998621 1123456789999999999999999 99999999999
Q ss_pred hhHhHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q psy15159 151 EFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLA 230 (238)
Q Consensus 151 ~~g~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~ 230 (238)
++|||.+++.+ +..++|+|+.++++.+++..+++.++.+++++.+..+.+|.+.+.+++++++++|||+||++++++++
T Consensus 266 ~~gkI~~~v~~-~~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~~~l~~aisl~V~~~Pe~Lp~~vt~~La 344 (903)
T PRK15122 266 YFGSLAKSIVG-TRAQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFTKGDWLEALLFALAVAVGLTPEMLPMIVSSNLA 344 (903)
T ss_pred HhhHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99999999977 66789999999999999988887777777766666667899999999999999999999999999999
Q ss_pred HHHHHhhC
Q psy15159 231 LGVMRIYI 238 (238)
Q Consensus 231 ~~~~rl~k 238 (238)
.|++||+|
T Consensus 345 ~g~~~mak 352 (903)
T PRK15122 345 KGAIAMAR 352 (903)
T ss_pred HHHHHHHH
Confidence 99999985
No 9
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-33 Score=276.30 Aligned_cols=193 Identities=35% Similarity=0.566 Sum_probs=178.2
Q ss_pred eeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCc----------ceeeeeeccccccCCcceee
Q psy15159 23 AIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNG----------KGIDLAIDESSFTGETEPAT 87 (238)
Q Consensus 23 ~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G----------~~~~~~vdES~LTGEs~Pv~ 87 (238)
++||+++++++++|+++.++.++| | ++|+++|| ||||+|.+++| ++.++.||||+|||||.|+.
T Consensus 121 ~~qe~~a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eL-VpGDiV~l~~gd~vPAD~rLl~~~~l~VdEs~LTGES~pv~ 199 (917)
T COG0474 121 FVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASEL-VPGDIVLLEAGDVVPADLRLLESSDLEVDESALTGESLPVE 199 (917)
T ss_pred HHHHHHHHHHHHHHHhhccCceEEEeCCcEEEecHHHC-CCCcEEEECCCCccccceEEEEecCceEEcccccCCCcchh
Confidence 458899999999999999999998 5 89999999 99999999999 34457899999999999999
Q ss_pred ccCCCCC-CCCCCC-CCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCC
Q psy15159 88 KVTSPML-KTNGHT-SMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAP 165 (238)
Q Consensus 88 K~~~~~~-~~~~~~-~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~ 165 (238)
|.+.... .+.+.. +++|++|+||.|.+|.+ +++|++||++|.+|++.+++......
T Consensus 200 K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~----------------------~giVvaTG~~T~~G~ia~~~~~~~~~ 257 (917)
T COG0474 200 KQALPLTKSDAPLGLDRDNMLFSGTTVVSGRA----------------------KGIVVATGFETEFGKIARLLPTKKEV 257 (917)
T ss_pred ccccccccccccccCCccceEEeCCEEEcceE----------------------EEEEEEEcCccHHHHHHHhhcccccc
Confidence 9987665 345666 99999999999999999 99999999999999999999887678
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 166 KTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRP-VLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 166 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
++|+|+.++++..++..++++++++++++.++.+.+ |.+.+.+++++++.++|++||+.++++++.|++||+|
T Consensus 258 ~t~l~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~mak 331 (917)
T COG0474 258 KTPLQRKLNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTIALALGAQRMAK 331 (917)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888655 8999999999999999999999999999999999986
No 10
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=7.4e-33 Score=274.56 Aligned_cols=195 Identities=17% Similarity=0.244 Sum_probs=177.1
Q ss_pred hhhHHHHHhhhhhhhccceeeeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCcc---------
Q psy15159 3 SVFLTLFFTKIFRPSQGIDLAIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNGK--------- 68 (238)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G~--------- 68 (238)
+++++++..|.|++.+.+. ++++.+++|.++.|..+++ | ++|+.++| +|||+|.+++|+
T Consensus 290 ~~i~~~~~~g~~le~~~~~------~~~~~~~~L~~l~p~~a~~~~~~~~~~v~~~~l-~~GD~v~v~~G~~iP~Dg~v~ 362 (834)
T PRK10671 290 AMIIGLINLGHMLEARARQ------RSSKALEKLLDLTPPTARVVTDEGEKSVPLADV-QPGMLLRLTTGDRVPVDGEIT 362 (834)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHhccCCCEEEEEeCCcEEEEEHHHc-CCCCEEEEcCCCEeeeeEEEE
Confidence 4667777888888887665 7889999999999999887 3 77999999 999999999994
Q ss_pred eeeeeeccccccCCcceeeccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCc
Q psy15159 69 GIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGE 148 (238)
Q Consensus 69 ~~~~~vdES~LTGEs~Pv~K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~ 148 (238)
.+...||||+|||||.|+.|.+++. +|+||.+.+|.+ +++|+++|.
T Consensus 363 ~g~~~vdeS~lTGEs~pv~k~~gd~------------V~aGt~~~~G~~----------------------~~~v~~~g~ 408 (834)
T PRK10671 363 QGEAWLDEAMLTGEPIPQQKGEGDS------------VHAGTVVQDGSV----------------------LFRASAVGS 408 (834)
T ss_pred EceEEEeehhhcCCCCCEecCCCCE------------EEecceecceeE----------------------EEEEEEEcC
Confidence 3467899999999999999999998 999999999999 999999999
Q ss_pred chhhHhHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHcCCchHHHHH
Q psy15159 149 KSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRP--VLDMFTIGVSLAVAAIPEGLPIVVT 226 (238)
Q Consensus 149 ~T~~g~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~lv~~~P~~Lp~~~~ 226 (238)
+|.+|||.+++++++..++|+|+.+|+++.++++++++++++.+++|++.+.. |...+.+++++++++|||||++++|
T Consensus 409 ~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~~~~~~~~~~~~~~~~~a~~vlv~acPcaL~la~p 488 (834)
T PRK10671 409 HTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATP 488 (834)
T ss_pred cChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhcccchhhhHH
Confidence 99999999999999999999999999999999999999998888888776543 5678889999999999999999999
Q ss_pred HHHHHHHHHhhC
Q psy15159 227 VTLALGVMRIYI 238 (238)
Q Consensus 227 ~~l~~~~~rl~k 238 (238)
+++..+.+|++|
T Consensus 489 ~a~~~~~~~~a~ 500 (834)
T PRK10671 489 MSIISGVGRAAE 500 (834)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 11
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=7.6e-33 Score=263.93 Aligned_cols=188 Identities=15% Similarity=0.207 Sum_probs=168.5
Q ss_pred hhhHHHHHhhhhhhhccceeeeehhhhcccchhhhhccCCCccc--c----cccccCCceeeccEEEecCcc--------
Q psy15159 3 SVFLTLFFTKIFRPSQGIDLAIDESSFTGETEPATKVTSPMLKT--N----GHTSMRNIAFMGTLVRCGNGK-------- 68 (238)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~l~~~~~~~~~v--d----~~i~~~~L~v~GDiv~l~~G~-------- 68 (238)
++++++++.+.+.+...+. ++++.+++|.++.|..+++ | ++|+.++| +|||+|.+++|+
T Consensus 58 ~~i~~~~~~g~~le~~~~~------~a~~~~~~L~~~~p~~a~~~~~~~~~~~v~~~~l-~~GDii~v~~Ge~iP~Dg~v 130 (562)
T TIGR01511 58 AMLITFILLGRWLEMLAKG------RASDALSKLAKLQPSTATLLTKDGSIEEVPVALL-QPGDIVKVLPGEKIPVDGTV 130 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHC-CCCCEEEECCCCEecCceEE
Confidence 4566667777777666444 7888999999999988876 3 67999999 999999999993
Q ss_pred -eeeeeeccccccCCcceeeccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeC
Q psy15159 69 -GIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTG 147 (238)
Q Consensus 69 -~~~~~vdES~LTGEs~Pv~K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG 147 (238)
.+...||||+|||||.|+.|.+++. +|+||.+.+|.+ +++|+++|
T Consensus 131 ~~g~~~vdes~lTGEs~pv~k~~gd~------------V~aGt~~~~g~~----------------------~~~v~~~g 176 (562)
T TIGR01511 131 IEGESEVDESLVTGESLPVPKKVGDP------------VIAGTVNGTGSL----------------------VVRATATG 176 (562)
T ss_pred EECceEEehHhhcCCCCcEEcCCCCE------------EEeeeEECCceE----------------------EEEEEEec
Confidence 3467899999999999999999998 999999999999 99999999
Q ss_pred cchhhHhHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHH
Q psy15159 148 EKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTV 227 (238)
Q Consensus 148 ~~T~~g~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~ 227 (238)
.+|.+|||.+++++++..++|+|+.++++++++++++++++++.+++|+ ..+.+++++++++|||+|++++|+
T Consensus 177 ~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~~~~-------~~~~~~~svlvvacPcaL~la~p~ 249 (562)
T TIGR01511 177 EDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWL-------FALEFAVTVLIIACPCALGLATPT 249 (562)
T ss_pred CCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccchhhhHHHH
Confidence 9999999999999999999999999999999999999988888777654 488999999999999999999999
Q ss_pred HHHHHHHHhhC
Q psy15159 228 TLALGVMRIYI 238 (238)
Q Consensus 228 ~l~~~~~rl~k 238 (238)
++..++.+++|
T Consensus 250 a~~~~~~~aa~ 260 (562)
T TIGR01511 250 VIAVATGLAAK 260 (562)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 12
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=2e-32 Score=267.97 Aligned_cols=195 Identities=15% Similarity=0.198 Sum_probs=173.0
Q ss_pred hhhHHHHHhhhhhhhccceeeeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCcc---------
Q psy15159 3 SVFLTLFFTKIFRPSQGIDLAIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNGK--------- 68 (238)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G~--------- 68 (238)
++++++++.+.+++.+. +.++++.+++|.++.|+.+++ | ++++.++| +|||+|.+++|+
T Consensus 210 ~~i~~l~~~g~~le~~~------~~ra~~~~~~L~~l~p~~a~vir~g~~~~v~~~~l-~~GDiv~v~~G~~IP~Dg~vi 282 (741)
T PRK11033 210 AMVLLLFLIGERLEGYA------ASRARRGVSALMALVPETATRLRDGEREEVAIADL-RPGDVIEVAAGGRLPADGKLL 282 (741)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhCCCCEEEEEECCEEEEEEHHHC-CCCCEEEECCCCEEecceEEE
Confidence 35555666667776654 448999999999999999987 4 78999999 999999999993
Q ss_pred eeeeeeccccccCCcceeeccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCc
Q psy15159 69 GIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGE 148 (238)
Q Consensus 69 ~~~~~vdES~LTGEs~Pv~K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~ 148 (238)
.+...||||+|||||.||.|.+|+. +|+||.+.+|.+ +++|+++|.
T Consensus 283 ~g~~~vdes~lTGEs~Pv~k~~Gd~------------V~aGt~~~~G~~----------------------~i~V~~~g~ 328 (741)
T PRK11033 283 SPFASFDESALTGESIPVERATGEK------------VPAGATSVDRLV----------------------TLEVLSEPG 328 (741)
T ss_pred ECcEEeecccccCCCCCEecCCCCe------------eccCCEEcCceE----------------------EEEEEeccc
Confidence 3367899999999999999999998 999999999999 999999999
Q ss_pred chhhHhHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHcCCchHHHHHH
Q psy15159 149 KSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLG-WFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTV 227 (238)
Q Consensus 149 ~T~~g~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~ 227 (238)
+|++|||.+++++++..++|+|+.+|++++++++++++++++++++| ++.+.+|..++.+++++++++|||+|.+++|+
T Consensus 329 ~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~~~~~~~~~i~~a~svlviacPcaL~latP~ 408 (741)
T PRK11033 329 ASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLFAAPWQEWIYRGLTLLLIGCPCALVISTPA 408 (741)
T ss_pred cCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHhchhhhhhhhHH
Confidence 99999999999999999999999999999999999999999998887 44577899999999999999999999888888
Q ss_pred HHHHHHHHhhC
Q psy15159 228 TLALGVMRIYI 238 (238)
Q Consensus 228 ~l~~~~~rl~k 238 (238)
++..+..+++|
T Consensus 409 a~~~~l~~aar 419 (741)
T PRK11033 409 AITSGLAAAAR 419 (741)
T ss_pred HHHHHHHHHHH
Confidence 88777776654
No 13
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.98 E-value=5e-32 Score=270.60 Aligned_cols=193 Identities=34% Similarity=0.443 Sum_probs=166.3
Q ss_pred eeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCcc----------eeeeeeccccccCCcceee
Q psy15159 23 AIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNGK----------GIDLAIDESSFTGETEPAT 87 (238)
Q Consensus 23 ~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G~----------~~~~~vdES~LTGEs~Pv~ 87 (238)
++||+++++.+++|+++.++.++| | ++|+++|| ||||+|.+++|+ +.++.||||+|||||.|+.
T Consensus 54 ~~qe~~a~~~~~~L~~~~~~~~~ViRdg~~~~I~~~~L-v~GDiv~l~~Gd~IPaD~~ll~~~~l~VdeS~LTGES~pv~ 132 (917)
T TIGR01116 54 VWQERNAEKAIEALKEYESEHAKVLRDGRWSVIKAKDL-VPGDIVELAVGDKVPADIRVLSLKTLRVDQSILTGESVSVN 132 (917)
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEECCEEEEEEHHHC-CCCCEEEECCCCEeeccEEEEEecceEEEcccccCCCCccc
Confidence 457889999999999999999888 5 88999999 999999999993 3368899999999999999
Q ss_pred ccCCCCCCC-CCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCCC
Q psy15159 88 KVTSPMLKT-NGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPK 166 (238)
Q Consensus 88 K~~~~~~~~-~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~~ 166 (238)
|.++..+++ ..+.+++|++|+||.|.+|.+ .++|++||.+|.+|||.+++...+.++
T Consensus 133 K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~----------------------~~~V~~tG~~T~~gki~~~~~~~~~~~ 190 (917)
T TIGR01116 133 KHTESVPDERAVNQDKKNMLFSGTLVVAGKA----------------------RGVVVRTGMSTEIGKIRDEMRAAEQED 190 (917)
T ss_pred ccccccCccccCcccccceeeeCCEEecceE----------------------EEEEEEeCCCCHHHHHHHHhhccCCCC
Confidence 998754333 456788999999999999999 999999999999999999999888889
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCH----HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHh
Q psy15159 167 TPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQ------GRPV----LDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236 (238)
Q Consensus 167 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~----~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl 236 (238)
+|+|+.+++++.++.++.++++++++++++.. +.+| ...+..++++++++|||+||++++++++.+++||
T Consensus 191 t~lq~~l~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~v~~iP~~Lp~~vti~l~~~~~~m 270 (917)
T TIGR01116 191 TPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWIQGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRKM 270 (917)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHH
Confidence 99999999999999988877777666654321 2223 3455577899999999999999999999999999
Q ss_pred hC
Q psy15159 237 YI 238 (238)
Q Consensus 237 ~k 238 (238)
+|
T Consensus 271 ~~ 272 (917)
T TIGR01116 271 AK 272 (917)
T ss_pred HH
Confidence 75
No 14
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.98 E-value=6.1e-32 Score=271.80 Aligned_cols=191 Identities=25% Similarity=0.349 Sum_probs=173.2
Q ss_pred eeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCcc----------eeeeeeccccccCCcceee
Q psy15159 23 AIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNGK----------GIDLAIDESSFTGETEPAT 87 (238)
Q Consensus 23 ~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G~----------~~~~~vdES~LTGEs~Pv~ 87 (238)
++||+++++.+++|.++.+..++| | ++|+++|| ||||+|.+++|+ +..+.||||+|||||.|+.
T Consensus 122 ~~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~l-v~GDiv~l~~Gd~IPaD~~il~~~~l~VdeS~LTGES~pv~ 200 (997)
T TIGR01106 122 YYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQV-VVGDLVEVKGGDRIPADLRIISAQGCKVDNSSLTGESEPQT 200 (997)
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHC-CCCCEEEECCCCEEeeeEEEEEccCcEEEccccCCCCCcee
Confidence 458889999999999999998888 5 88999999 999999999993 3357899999999999999
Q ss_pred ccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCCCC
Q psy15159 88 KVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKT 167 (238)
Q Consensus 88 K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~ 167 (238)
|.+++. ...+.+++|++|+||.|.+|.+ .++|++||.+|.+|++.+++...+..++
T Consensus 201 K~~~~~--~~~~~~~~n~l~~Gt~v~~G~~----------------------~~~V~~tG~~T~~g~i~~~~~~~~~~~~ 256 (997)
T TIGR01106 201 RSPEFT--HENPLETRNIAFFSTNCVEGTA----------------------RGIVVNTGDRTVMGRIASLASGLENGKT 256 (997)
T ss_pred ccCCCc--ccCccccCCeEEeccEeeeeeE----------------------EEEEEEccccchhhHHHhhhhhcccCCC
Confidence 988753 2235588999999999999999 9999999999999999999988888899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 168 PLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 168 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
|+|+.++++..++.+++++++++++++++..+.+|.+.+.+++++++++|||+||++++++++.+++||+|
T Consensus 257 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~m~~ 327 (997)
T TIGR01106 257 PIAIEIEHFIHIITGVAVFLGVSFFILSLILGYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMAR 327 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888777778899999999999999999999999999999999999975
No 15
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.98 E-value=3e-32 Score=258.58 Aligned_cols=193 Identities=17% Similarity=0.165 Sum_probs=170.3
Q ss_pred hhHHHHHhhhhhhhccceeeeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCcc---------e
Q psy15159 4 VFLTLFFTKIFRPSQGIDLAIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNGK---------G 69 (238)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G~---------~ 69 (238)
+++++++.+.+.... +++++++.+++|.++.|+.+++ | +++++++| +|||+|.+++|+ .
T Consensus 23 ~i~~~~~~~~~l~~~------~~~~a~~~l~~l~~~~~~~~~v~r~g~~~~i~~~~l-~~GDiv~v~~G~~iP~Dg~ii~ 95 (536)
T TIGR01512 23 LLLLLFSIGETLEEY------ASGRARRALKALMELAPDTARVLRGGSLEEVAVEEL-KVGDVVVVKPGERVPVDGVVLS 95 (536)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCCEEEEEECCEEEEEEHHHC-CCCCEEEEcCCCEeecceEEEe
Confidence 344455555555443 5668999999999999999888 4 78999999 999999999993 3
Q ss_pred eeeeeccccccCCcceeeccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcc
Q psy15159 70 IDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEK 149 (238)
Q Consensus 70 ~~~~vdES~LTGEs~Pv~K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~ 149 (238)
+.+.||||+|||||.|+.|.+++. +|+||.+.+|.+ +++|++||.+
T Consensus 96 g~~~vdes~lTGEs~pv~k~~g~~------------v~aGt~v~~G~~----------------------~~~V~~~g~~ 141 (536)
T TIGR01512 96 GTSTVDESALTGESVPVEKAPGDE------------VFAGAINLDGVL----------------------TIVVTKLPAD 141 (536)
T ss_pred CcEEEEecccCCCCCcEEeCCCCE------------EEeeeEECCceE----------------------EEEEEEeccc
Confidence 467899999999999999999988 999999999999 9999999999
Q ss_pred hhhHhHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q psy15159 150 SEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTL 229 (238)
Q Consensus 150 T~~g~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l 229 (238)
|.+|||.++++.++.+++|+|+.++++++++++++++++++++++|++.+. +...+.+++++++++|||+||+++|+++
T Consensus 142 t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~svlv~~~P~aL~la~~~~~ 220 (536)
T TIGR01512 142 STIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLKR-WPFWVYRALVLLVVASPCALVISAPAAY 220 (536)
T ss_pred cHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHhhcCccccccchHHHH
Confidence 999999999999888999999999999999999999999888887776543 3448889999999999999999999999
Q ss_pred HHHHHHhhC
Q psy15159 230 ALGVMRIYI 238 (238)
Q Consensus 230 ~~~~~rl~k 238 (238)
..+.+|++|
T Consensus 221 ~~~~~~~~k 229 (536)
T TIGR01512 221 LSAISAAAR 229 (536)
T ss_pred HHHHHHHHH
Confidence 999999975
No 16
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=99.97 E-value=4.1e-31 Score=224.77 Aligned_cols=184 Identities=24% Similarity=0.450 Sum_probs=160.6
Q ss_pred ehhhhcccchhhhhccCCC-ccc--c---cccccCCceeeccEEEecCcc---------e-eeeeeccccccCCcceeec
Q psy15159 25 DESSFTGETEPATKVTSPM-LKT--N---GHTSMRNIAFMGTLVRCGNGK---------G-IDLAIDESSFTGETEPATK 88 (238)
Q Consensus 25 ~e~~~~~~~~~l~~~~~~~-~~v--d---~~i~~~~L~v~GDiv~l~~G~---------~-~~~~vdES~LTGEs~Pv~K 88 (238)
++.+.++..+++++..++. ++| | ++++.+|| +|||+|.+++|+ . +.+.||||.+|||+.|+.|
T Consensus 16 ~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L-~~GDiI~l~~g~~vPaD~~ll~~g~~~vd~s~ltGes~pv~k 94 (230)
T PF00122_consen 16 QEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSEL-VPGDIIILKAGDIVPADGILLESGSAYVDESALTGESEPVKK 94 (230)
T ss_dssp HHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT--TTSEEEEETTEBESSEEEEEESSEEEEECHHHHSBSSEEEE
T ss_pred HHHHHHHHHHHHhccCCCccEEEEeccccccchHhhc-cceeeeecccccccccCccceecccccccccccccccccccc
Confidence 4557888899998888886 666 4 88999999 999999999992 3 7889999999999999999
Q ss_pred cCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCCCCh
Q psy15159 89 VTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTP 168 (238)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~ 168 (238)
.+. ..+.+|++|+||.+.+|.+ .++|++||.+|..|++.+.+...+..+++
T Consensus 95 ~~~-------~~~~~~~i~~Gs~v~~g~~----------------------~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~ 145 (230)
T PF00122_consen 95 TPL-------PLNPGNIIFAGSIVVSGWG----------------------IGVVIATGSDTKLGRILQLVSKSESKKSP 145 (230)
T ss_dssp SSS-------CCCTTTEE-TTEEEEEEEE----------------------EEEEEE-GGGSHHHHHHHHHHTSCSS-TH
T ss_pred ccc-------cccccchhhcccccccccc----------------------ccccceeeecccccccccccccccccchh
Confidence 955 3455678999999999999 99999999999999999999888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 169 LQKSMDILGTQLSLYSFCIIGLIMLLGWF--QGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 169 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
+++.++++..++.++.++++++.++++++ .+.+|...+..++++++.+|||+||+++++++..+++||+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~ 217 (230)
T PF00122_consen 146 LERKLNKIAKILIIIILAIAILVFIIWFFNDSGISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAK 217 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTGSTTCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhcccccchhhhccceecccccccccccccccceeeeecccceeehHHHHHHHHHHHHHH
Confidence 99999999999999999888888877776 67788999999999999999999999999999999999874
No 17
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.97 E-value=2.1e-31 Score=253.87 Aligned_cols=193 Identities=18% Similarity=0.256 Sum_probs=171.4
Q ss_pred hhhHHHHHhhhhhhhccceeeeehhhhcccchhhhhccCCCccc--c----cccccCCceeeccEEEecCcc--------
Q psy15159 3 SVFLTLFFTKIFRPSQGIDLAIDESSFTGETEPATKVTSPMLKT--N----GHTSMRNIAFMGTLVRCGNGK-------- 68 (238)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~l~~~~~~~~~v--d----~~i~~~~L~v~GDiv~l~~G~-------- 68 (238)
++++++++.+.+.... ++.++++.+++|.+..|+.+++ | ++++.++| +|||+|.+++|+
T Consensus 22 ~~i~~~~~~~~~i~~~------~~~~~~~~l~~l~~~~~~~~~v~r~~g~~~~i~~~~l-~~GDiv~v~~G~~iP~Dg~v 94 (556)
T TIGR01525 22 ALLLFLFLLGETLEER------AKGRASDALSALLALAPSTARVLQGDGSEEEVPVEEL-QVGDIVIVRPGERIPVDGVV 94 (556)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHC-CCCCEEEECCCCEeccceEE
Confidence 3455555666666554 4557899999999998887777 3 57999999 999999999993
Q ss_pred -eeeeeeccccccCCcceeeccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeC
Q psy15159 69 -GIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTG 147 (238)
Q Consensus 69 -~~~~~vdES~LTGEs~Pv~K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG 147 (238)
++.+.||||+|||||.|+.|.+++. +|+||.+.+|.+ +++|+++|
T Consensus 95 i~g~~~vdes~lTGEs~pv~k~~g~~------------v~aGt~v~~g~~----------------------~~~v~~~g 140 (556)
T TIGR01525 95 ISGESEVDESALTGESMPVEKKEGDE------------VFAGTINGDGSL----------------------TIRVTKLG 140 (556)
T ss_pred EecceEEeehhccCCCCCEecCCcCE------------EeeceEECCceE----------------------EEEEEEec
Confidence 3467899999999999999999988 999999999999 99999999
Q ss_pred cchhhHhHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHH
Q psy15159 148 EKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTV 227 (238)
Q Consensus 148 ~~T~~g~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~ 227 (238)
.+|++|++.+++++++.+++|+|+.++++++++++++++++++.+++|+..+.+ ..+.+++++++++|||+||+++|+
T Consensus 141 ~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~~~--~~~~~~~~vlv~~~P~al~l~~~~ 218 (556)
T TIGR01525 141 EDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGAL--GALYRALAVLVVACPCALGLATPV 218 (556)
T ss_pred ccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHhhccccchhehhHH
Confidence 999999999999998899999999999999999999999999998888766544 889999999999999999999999
Q ss_pred HHHHHHHHhhC
Q psy15159 228 TLALGVMRIYI 238 (238)
Q Consensus 228 ~l~~~~~rl~k 238 (238)
++..+.++++|
T Consensus 219 ~~~~~~~~~~~ 229 (556)
T TIGR01525 219 AILVAIGVAAR 229 (556)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 18
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.97 E-value=1.1e-30 Score=261.66 Aligned_cols=182 Identities=29% Similarity=0.473 Sum_probs=157.1
Q ss_pred eeehhhhcccchhhhhc-cCCCccc--c---cccccCCceeeccEEEecCcc----------eeeeeeccccccCCccee
Q psy15159 23 AIDESSFTGETEPATKV-TSPMLKT--N---GHTSMRNIAFMGTLVRCGNGK----------GIDLAIDESSFTGETEPA 86 (238)
Q Consensus 23 ~~~e~~~~~~~~~l~~~-~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G~----------~~~~~vdES~LTGEs~Pv 86 (238)
.++|++.+++.++|.+. .+..++| | ++|+++|| ||||+|.+++|+ +.++.||||+|||||.|+
T Consensus 146 ~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~~~~I~~~~L-v~GDiV~l~~Gd~IPaD~~li~g~~l~VdES~LTGES~pv 224 (941)
T TIGR01517 146 AVNDYKKELQFRQLNREKSAQKIAVIRGGQEQQISIHDI-VVGDIVSLSTGDVVPADGVFISGLSLEIDESSITGESDPI 224 (941)
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEeHHHC-CCCCEEEECCCCEecccEEEEEcCcEEEEecccCCCCCcc
Confidence 35788899999999874 3566777 5 78999999 999999999993 337899999999999999
Q ss_pred eccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCCC
Q psy15159 87 TKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPK 166 (238)
Q Consensus 87 ~K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~~ 166 (238)
.|.+++. |++|+||.|.+|.+ +++|++||.+|++|||.+++.+++ ++
T Consensus 225 ~K~~~~~----------n~v~~GT~v~~G~~----------------------~~iV~~tG~~T~~gki~~~~~~~~-~~ 271 (941)
T TIGR01517 225 KKGAPKD----------SFLLSGTVVNEGSG----------------------RMLVTAVGVNSFGGKLMMELRAEG-ED 271 (941)
T ss_pred cccCCCC----------ceEEeCCeEEeeEE----------------------EEEEEEeCCCcHHHHHHHhhccCC-CC
Confidence 9987654 79999999999999 999999999999999999987755 67
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c----C---------CCHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q psy15159 167 TPLQKSMDILGTQLSLYSFCIIGLIMLLGWF---Q----G---------RPVLDMFTIGVSLAVAAIPEGLPIVVTVTLA 230 (238)
Q Consensus 167 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~----~---------~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~ 230 (238)
+|+|+.++++.+++.+++++++++++++++. . + .++.+.+.+++++++++||||||+++|++++
T Consensus 272 t~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP~~Lp~~vti~l~ 351 (941)
T TIGR01517 272 TPLQEKLSELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALA 351 (941)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 8999999999999998888777666655421 1 1 2567889999999999999999999999999
Q ss_pred HHHHHhhC
Q psy15159 231 LGVMRIYI 238 (238)
Q Consensus 231 ~~~~rl~k 238 (238)
.+++||+|
T Consensus 352 ~~~~~mak 359 (941)
T TIGR01517 352 YSMKKMMK 359 (941)
T ss_pred HHHHHHHh
Confidence 99999986
No 19
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.97 E-value=1.5e-30 Score=263.10 Aligned_cols=190 Identities=16% Similarity=0.163 Sum_probs=157.8
Q ss_pred ehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEec--Ccc---------eeeeeeccccccCCcceeec
Q psy15159 25 DESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCG--NGK---------GIDLAIDESSFTGETEPATK 88 (238)
Q Consensus 25 ~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~--~G~---------~~~~~vdES~LTGEs~Pv~K 88 (238)
+++++.++++++.+. +..++| | ++|+++|| ||||+|.++ +|+ .+++.||||+|||||.|+.|
T Consensus 213 ~~~k~~~~L~~~~~~-~~~v~V~Rdg~~~~I~s~eL-vpGDiv~l~~~~g~~iPaD~~ll~g~~~VdES~LTGES~Pv~K 290 (1054)
T TIGR01657 213 QIRKQMQRLRDMVHK-PQSVIVIRNGKWVTIASDEL-VPGDIVSIPRPEEKTMPCDSVLLSGSCIVNESMLTGESVPVLK 290 (1054)
T ss_pred HHHHHHHHHHHhhcC-CeeEEEEECCEEEEEEcccC-CCCCEEEEecCCCCEecceEEEEeCcEEEecccccCCccceec
Confidence 455555555555432 445666 5 88999999 999999999 882 34789999999999999999
Q ss_pred cCCCCC--CC----CCCCCCcceeeeccEEEe-------eeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhH
Q psy15159 89 VTSPML--KT----NGHTSMRNIAFMGTLVRC-------GNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEV 155 (238)
Q Consensus 89 ~~~~~~--~~----~~~~~~~~~v~aGT~v~~-------G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i 155 (238)
.+.+.+ ++ ....+++|++|+||.|.+ |.+ +++|++||++|.+|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~----------------------~~vV~~TG~~T~~G~i 348 (1054)
T TIGR01657 291 FPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGC----------------------LAIVVRTGFSTSKGQL 348 (1054)
T ss_pred ccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcE----------------------EEEEEeCCccccchHH
Confidence 986431 11 235688999999999996 556 9999999999999999
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q psy15159 156 FKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMR 235 (238)
Q Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~r 235 (238)
.+++.++++.++++++.+.++...+..++++..++.++.++..+.++...+.++++++++++||+||++++++++.|++|
T Consensus 349 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~a~i~~i~~~~~~~~~~~~~~~~~l~~l~iiv~~vP~~LP~~~ti~l~~~~~r 428 (1054)
T TIGR01657 349 VRSILYPKPRVFKFYKDSFKFILFLAVLALIGFIYTIIELIKDGRPLGKIILRSLDIITIVVPPALPAELSIGINNSLAR 428 (1054)
T ss_pred HHHhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHH
Confidence 99999988889999999999998888777666555555555667899999999999999999999999999999999999
Q ss_pred hhC
Q psy15159 236 IYI 238 (238)
Q Consensus 236 l~k 238 (238)
|+|
T Consensus 429 L~k 431 (1054)
T TIGR01657 429 LKK 431 (1054)
T ss_pred HHH
Confidence 986
No 20
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=99.97 E-value=1.9e-29 Score=243.18 Aligned_cols=181 Identities=17% Similarity=0.204 Sum_probs=154.4
Q ss_pred eehhhhcccchhhhhccCC-Cccc--c----cccccCCceeeccEEEecCcc---------eeeeeeccccccCCcceee
Q psy15159 24 IDESSFTGETEPATKVTSP-MLKT--N----GHTSMRNIAFMGTLVRCGNGK---------GIDLAIDESSFTGETEPAT 87 (238)
Q Consensus 24 ~~e~~~~~~~~~l~~~~~~-~~~v--d----~~i~~~~L~v~GDiv~l~~G~---------~~~~~vdES~LTGEs~Pv~ 87 (238)
++|+++++..++|+++.+. .+++ | ++|++++| ++||+|.+++|+ .+.+.||||+|||||.||.
T Consensus 85 ~ae~ra~~~~~sL~~l~~~~~a~vir~g~~~~~V~~~eL-~~GDiV~v~~Gd~IPaDG~vieG~a~VDESaLTGES~PV~ 163 (679)
T PRK01122 85 LAEGRGKAQADSLRGAKKDTFARKLREPGAAEEVPATEL-RKGDIVLVEAGEIIPADGEVIEGVASVDESAITGESAPVI 163 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEECCCEEEEEEHHHc-CCCCEEEEcCCCEEEEEEEEEEccEEEEcccccCCCCceE
Confidence 3677899999999999876 5776 3 56999999 999999999993 2367899999999999999
Q ss_pred ccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCCCC
Q psy15159 88 KVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKT 167 (238)
Q Consensus 88 K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~ 167 (238)
|.+++. ++.+|+||.|.+|.+ +++|+++|.+|++|||.++++.++.+++
T Consensus 164 K~~G~~---------~~~V~aGT~v~~G~~----------------------~i~Vta~g~~S~lgki~~lve~a~~~kt 212 (679)
T PRK01122 164 RESGGD---------FSSVTGGTRVLSDWI----------------------VIRITANPGESFLDRMIALVEGAKRQKT 212 (679)
T ss_pred eCCCCc---------cCeEEeceEEEeeeE----------------------EEEEEEecccCHHHHHHHHHHhccccCC
Confidence 998865 233999999999999 9999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 168 PLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 168 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
|+|...+.+..++..+.+++....+++.|+.+.++ .+..++++++++|||+|+.+++.....|++||+|
T Consensus 213 p~e~al~~l~~~l~~i~l~~~~~~~~~~~~~g~~~--~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak 281 (679)
T PRK01122 213 PNEIALTILLAGLTIIFLLVVATLPPFAAYSGGAL--SITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQ 281 (679)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchH--HHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhc
Confidence 99999988888777665555444444445555444 7888899999999999999999999999999986
No 21
>KOG0208|consensus
Probab=99.96 E-value=1.1e-29 Score=244.54 Aligned_cols=193 Identities=17% Similarity=0.152 Sum_probs=168.1
Q ss_pred hcccchhhhhccCCCccc----c---cccccCCceeeccEEEecCc----------ceeeeeeccccccCCcceeeccCC
Q psy15159 29 FTGETEPATKVTSPMLKT----N---GHTSMRNIAFMGTLVRCGNG----------KGIDLAIDESSFTGETEPATKVTS 91 (238)
Q Consensus 29 ~~~~~~~l~~~~~~~~~v----d---~~i~~~~L~v~GDiv~l~~G----------~~~~~~vdES~LTGEs~Pv~K~~~ 91 (238)
.++....++++....+.| | ++|+++|| ||||++++.++ .++++.||||||||||+||.|.+.
T Consensus 235 ~r~qs~rlr~mv~~~~~V~V~R~g~~~ti~S~eL-VPGDil~i~~~~~~~PcDa~Li~g~civNEsmLTGESVPv~K~~l 313 (1140)
T KOG0208|consen 235 TRKQSIRLRSMVKFTCPVTVIRDGFWETVDSSEL-VPGDILYIPPPGKIMPCDALLISGDCIVNESMLTGESVPVTKTPL 313 (1140)
T ss_pred HHHHHHHHHHHhcCCceEEEEECCEEEEEecccc-ccccEEEECCCCeEeecceEEEeCcEEeecccccCCcccccccCC
Confidence 445566677777666655 4 89999999 99999999994 467899999999999999999988
Q ss_pred CCCCC-------CCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCC
Q psy15159 92 PMLKT-------NGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEA 164 (238)
Q Consensus 92 ~~~~~-------~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~ 164 (238)
+.-.+ ....+++|++|+||.+++.....+. .++++|+|||++|.+|++.|.+.++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r~~~g~----------------~v~a~V~RTGF~T~KGqLVRsilyPkP 377 (1140)
T KOG0208|consen 314 PMGTDSLDSITISMSTNSRHTLFCGTKVLQARAYLGG----------------PVLAMVLRTGFSTTKGQLVRSILYPKP 377 (1140)
T ss_pred ccccccCcCeeechhhcCcceeeccceEEEeecCCCC----------------ceEEEEEeccccccccHHHHhhcCCCC
Confidence 62221 3478899999999999986542211 119999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 165 PKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 165 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
.++++.+++.+|...+..++++..+.+.+.....|.++...+.++++++.+.+|||||++++++..++.+||.|
T Consensus 378 ~~fkfyrds~~fi~~l~~ia~~gfiy~~i~l~~~g~~~~~iiirsLDliTi~VPPALPAaltvG~~~a~~RLkk 451 (1140)
T KOG0208|consen 378 VNFKFYRDSFKFILFLVIIALIGFIYTAIVLNLLGVPLKTIIIRSLDLITIVVPPALPAALTVGIIYAQSRLKK 451 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCCHHHHhhhhhcEEEEecCCCchhhhhHHHHHHHHHHHh
Confidence 99999999999999999999998888888888999999999999999999999999999999999999999986
No 22
>KOG0207|consensus
Probab=99.96 E-value=6.3e-31 Score=252.49 Aligned_cols=190 Identities=15% Similarity=0.232 Sum_probs=172.7
Q ss_pred hhhHHHHHhhhhhhhccceeeeehhhhcccchhhhhccCCCccc--c----cccccCCceeeccEEEecCcc--------
Q psy15159 3 SVFLTLFFTKIFRPSQGIDLAIDESSFTGETEPATKVTSPMLKT--N----GHTSMRNIAFMGTLVRCGNGK-------- 68 (238)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~l~~~~~~~~~v--d----~~i~~~~L~v~GDiv~l~~G~-------- 68 (238)
.|++.|+..++|++..++. ++...+..|..+.|..+.. | ++|+.+.+ .+||+|.+.||+
T Consensus 345 ~MLi~fi~lgr~LE~~Ak~------kts~alskLmsl~p~~a~ii~~g~~e~eI~v~lv-q~gdivkV~pG~kiPvDG~V 417 (951)
T KOG0207|consen 345 PMLITFITLGRWLESLAKG------KTSEALSKLMSLAPSKATIIEDGSEEKEIPVDLV-QVGDIVKVKPGEKIPVDGVV 417 (951)
T ss_pred HHHHHHHHHHHHHHHHhhc------cchHHHHHHhhcCcccceEeecCCcceEeeeeee-ccCCEEEECCCCccccccEE
Confidence 4678899999999998877 6788888888998988876 2 78999999 999999999993
Q ss_pred -eeeeeeccccccCCcceeeccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeC
Q psy15159 69 -GIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTG 147 (238)
Q Consensus 69 -~~~~~vdES~LTGEs~Pv~K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG 147 (238)
.++..||||++|||++||.|.+++. +.+||.+..|.. ...++++|
T Consensus 418 v~Gss~VDEs~iTGEs~PV~Kk~gs~------------ViaGsiN~nG~l----------------------~VkaT~~g 463 (951)
T KOG0207|consen 418 VDGSSEVDESLITGESMPVPKKKGST------------VIAGSINLNGTL----------------------LVKATKVG 463 (951)
T ss_pred EeCceeechhhccCCceecccCCCCe------------eeeeeecCCceE----------------------EEEEEecc
Confidence 4578899999999999999999999 999999999999 99999999
Q ss_pred cchhhHhHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CHHHHHHHHHHHHHHH
Q psy15159 148 EKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGR-----------PVLDMFTIGVSLAVAA 216 (238)
Q Consensus 148 ~~T~~g~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~lv~~ 216 (238)
.+|.+++|.+++++++..|+|+|+.+|+++.||+|+++++++.++++|.+.|. .+..+|.+++++++++
T Consensus 464 ~dttla~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~~g~~~~~~~~~~~~~~~~a~~~aisVlviA 543 (951)
T KOG0207|consen 464 GDTTLAQIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWILIGKIVFKYPRSFFDAFSHAFQLAISVLVIA 543 (951)
T ss_pred ccchHHHHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHHHccccccCcchhhHHHHHHHHhhheEEEEE
Confidence 99999999999999999999999999999999999999999999999987664 4567899999999999
Q ss_pred cCCchHHHHHHHHHHHH
Q psy15159 217 IPEGLPIVVTVTLALGV 233 (238)
Q Consensus 217 ~P~~Lp~~~~~~l~~~~ 233 (238)
|||+|.+++|++...|.
T Consensus 544 CPCaLgLATPtAvmvat 560 (951)
T KOG0207|consen 544 CPCALGLATPTAVMVAT 560 (951)
T ss_pred CchhhhcCCceEEEEEe
Confidence 99999999998765543
No 23
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=99.96 E-value=7.9e-29 Score=238.71 Aligned_cols=180 Identities=17% Similarity=0.186 Sum_probs=145.5
Q ss_pred ehhhhcccchhhhhccCC-Ccc-c--c---cccccCCceeeccEEEecCcc---------eeeeeeccccccCCcceeec
Q psy15159 25 DESSFTGETEPATKVTSP-MLK-T--N---GHTSMRNIAFMGTLVRCGNGK---------GIDLAIDESSFTGETEPATK 88 (238)
Q Consensus 25 ~e~~~~~~~~~l~~~~~~-~~~-v--d---~~i~~~~L~v~GDiv~l~~G~---------~~~~~vdES~LTGEs~Pv~K 88 (238)
.|.+++++.++|+++.++ .++ + | ++|++++| +|||+|.+++|+ .+...||||+|||||.||.|
T Consensus 86 ae~ra~~~~~~L~~~~~~~~a~~v~rdg~~~~I~a~eL-v~GDiV~v~~Gd~IPaDG~vieG~~~VDESaLTGES~PV~K 164 (673)
T PRK14010 86 AEGRGKAQANALRQTQTEMKARRIKQDGSYEMIDASDL-KKGHIVRVATGEQIPNDGKVIKGLATVDESAITGESAPVIK 164 (673)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEEEeCCEEEEEEHHHc-CCCCEEEECCCCcccCCeEEEEcceEEecchhcCCCCceec
Confidence 367899999999999986 665 4 4 78999999 999999999993 23678999999999999999
Q ss_pred cCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCCCCh
Q psy15159 89 VTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTP 168 (238)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~ 168 (238)
.++.. +++ +|+||.|.+|.+ +++|+++|.+|++|||.++++.++.+++|
T Consensus 165 ~~g~d--------~~~-V~aGT~v~~G~~----------------------~i~Vta~g~~T~lgki~~lve~a~~~ktp 213 (673)
T PRK14010 165 ESGGD--------FDN-VIGGTSVASDWL----------------------EVEITSEPGHSFLDKMIGLVEGATRKKTP 213 (673)
T ss_pred cCCCc--------cCe-eecCceeecceE----------------------EEEEEEecccCHHHHHHHHHhhccccCCH
Confidence 99822 122 999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 169 LQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 169 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
+|.....+...+..+.++.. .++.++....++...+...++++++++||+||..++++++.|++||+|
T Consensus 214 ~e~~l~~l~~~l~ii~l~~~--~~~~~~~~~~~~~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak 281 (673)
T PRK14010 214 NEIALFTLLMTLTIIFLVVI--LTMYPLAKFLNFNLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQ 281 (673)
T ss_pred HHHHHHHHHHHHhHHHHHHH--HHHHHHHhhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 99887776555443222221 111112112245556778888999999999999999999999999986
No 24
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=99.96 E-value=2.7e-28 Score=234.87 Aligned_cols=181 Identities=17% Similarity=0.184 Sum_probs=147.4
Q ss_pred eehhhhcccchhhhhccCCC-ccc---c---cccccCCceeeccEEEecCcc---------eeeeeeccccccCCcceee
Q psy15159 24 IDESSFTGETEPATKVTSPM-LKT---N---GHTSMRNIAFMGTLVRCGNGK---------GIDLAIDESSFTGETEPAT 87 (238)
Q Consensus 24 ~~e~~~~~~~~~l~~~~~~~-~~v---d---~~i~~~~L~v~GDiv~l~~G~---------~~~~~vdES~LTGEs~Pv~ 87 (238)
++|+++++..++|+++.++. +++ | ++|++++| ++||+|.+++|+ .+.+.||||+|||||.||.
T Consensus 86 ~ae~ra~~~~~~L~~~~~~~~a~vlr~dg~~~~V~~~~L-~~GDiV~V~~Gd~IPaDG~vieG~~~VDESaLTGES~PV~ 164 (675)
T TIGR01497 86 VAEGRGKAQADSLKGTKKTTFAKLLRDDGAIDKVPADQL-KKGDIVLVEAGDVIPCDGEVIEGVASVDESAITGESAPVI 164 (675)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEeeCCEEEEEEHHHC-CCCCEEEECCCCEEeeeEEEEEccEEEEcccccCCCCcee
Confidence 36778999999999998774 654 3 78999999 999999999993 2378899999999999999
Q ss_pred ccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCCCC
Q psy15159 88 KVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKT 167 (238)
Q Consensus 88 K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~ 167 (238)
|.+++.. +.+|+||.|.+|.+ +++|+++|.+|++|||.++++.++.+++
T Consensus 165 K~~g~~~---------~~V~aGT~v~~G~~----------------------~i~Vt~~g~~S~lgri~~lve~a~~~kt 213 (675)
T TIGR01497 165 KESGGDF---------ASVTGGTRILSDWL----------------------VVECTANPGETFLDRMIALVEGAQRRKT 213 (675)
T ss_pred ecCCCCc---------ceeecCcEEEeeEE----------------------EEEEEEecccCHHHHHHHHHHhcccCCC
Confidence 9998642 12999999999999 9999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 168 PLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 168 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
|+|..++.+..++..+.+++....+.+..+.+. ...+..++++++++|||+|+...+.....|++||+|
T Consensus 214 plq~~l~~l~~~l~~v~li~~~~~~~~~~~~~~--~~~~~~lvallV~aiP~aLg~l~~av~iag~~r~ar 282 (675)
T TIGR01497 214 PNEIALTILLIALTLVFLLVTATLWPFAAYGGN--AISVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVLG 282 (675)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--hHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHH
Confidence 999988888877665544333222221112332 335777899999999999988888877789999875
No 25
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.95 E-value=1.3e-27 Score=225.07 Aligned_cols=178 Identities=26% Similarity=0.336 Sum_probs=158.1
Q ss_pred hhhhcccchhhhh--ccCCCccc--c--cccccCCceeeccEEEecCcc---------eeeeeeccccccCCcceeeccC
Q psy15159 26 ESSFTGETEPATK--VTSPMLKT--N--GHTSMRNIAFMGTLVRCGNGK---------GIDLAIDESSFTGETEPATKVT 90 (238)
Q Consensus 26 e~~~~~~~~~l~~--~~~~~~~v--d--~~i~~~~L~v~GDiv~l~~G~---------~~~~~vdES~LTGEs~Pv~K~~ 90 (238)
+.++.+..+.+.+ ..+..+++ | ++|++++| +|||+|.+++|+ .+.+.||||+|||||.|+.|.+
T Consensus 17 ~~~~~~~~~~l~~~~~~~~~~~v~r~g~~~V~~~~l-~~GDiv~v~~G~~iP~Dg~vl~g~~~vdes~LTGEs~pv~k~~ 95 (499)
T TIGR01494 17 KRAAEDAIRSLKDLLVNPETVTVLRNGWKEIPASDL-VPGDIVLVKSGEIVPADGVLLSGSCFVDESNLTGESVPVLKTA 95 (499)
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCeEEEEHHHC-CCCCEEEECCCCEeeeeEEEEEccEEEEcccccCCCCCeeecc
Confidence 3467788888888 77777776 3 67999999 999999999993 3477899999999999999999
Q ss_pred CCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCCCChHH
Q psy15159 91 SPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQ 170 (238)
Q Consensus 91 ~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~l~ 170 (238)
++. +|+||.+.+|.. ++.|+++|.+|..+++.+.+..++..++++|
T Consensus 96 g~~------------v~~gs~~~~G~~----------------------~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~ 141 (499)
T TIGR01494 96 GDA------------VFAGTYVFNGTL----------------------IVVVSATGPNTFGGKIAVVVYTGFETKTPLQ 141 (499)
T ss_pred CCc------------cccCcEEeccEE----------------------EEEEEEeccccHHHHHHHHHHhcCCCCCchH
Confidence 988 999999999999 9999999999999999999988888799999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 171 KSMDILG-TQLSLYSFCIIGLIMLLGWFQGR---PVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 171 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
+..+++. .++.++.++++++.++.|+..+. +|...+.+++++++++|||+||+++++++..+..||+|
T Consensus 142 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~ 213 (499)
T TIGR01494 142 PKLDRLSDIIFILFVLLIALAVFLFWAIGLWDPNSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAK 213 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999 78888888888777777665433 38899999999999999999999999999999999875
No 26
>KOG0204|consensus
Probab=99.95 E-value=5.9e-28 Score=230.15 Aligned_cols=182 Identities=27% Similarity=0.446 Sum_probs=154.0
Q ss_pred eehhhhcccchhhhhccCCC-ccc--c---cccccCCceeeccEEEecCc----------ceeeeeeccccccCCcceee
Q psy15159 24 IDESSFTGETEPATKVTSPM-LKT--N---GHTSMRNIAFMGTLVRCGNG----------KGIDLAIDESSFTGETEPAT 87 (238)
Q Consensus 24 ~~e~~~~~~~~~l~~~~~~~-~~v--d---~~i~~~~L~v~GDiv~l~~G----------~~~~~~vdES~LTGEs~Pv~ 87 (238)
+++++.+...+.|.+..... ..| | ++|+.-|| |+||++.++.| ++.++.+|||++||||.||+
T Consensus 201 ~nDy~qe~QF~~L~~~k~~~k~~ViR~G~r~~isI~di-VVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~ 279 (1034)
T KOG0204|consen 201 VNDYRQELQFRKLQKEKRNIKFQVIRGGRRQQISIYDL-VVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQ 279 (1034)
T ss_pred cchhHHhhhhhhhhhhhhceEEEEEECCEEEEEEEeee-eeccEEEeecCCccccceEEEeccceeEecccccCCCccee
Confidence 35666666666666443332 223 4 88999999 99999999999 45589999999999999999
Q ss_pred ccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCCCC
Q psy15159 88 KVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKT 167 (238)
Q Consensus 88 K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~ 167 (238)
|+.... +++++||++.+|.| ++.|+++|.+|..|++...+.....+++
T Consensus 280 k~~~~d----------PfLlSGTkv~eGsg----------------------kMlVTaVGmnt~wG~~m~~l~~~~~e~t 327 (1034)
T KOG0204|consen 280 KSLDKD----------PFLLSGTKVMEGSG----------------------KMLVTAVGMNTQWGIIMTLLGAGGEEET 327 (1034)
T ss_pred ccCCCC----------CeEeecceeecCcc----------------------eEEEEEeeecchHhhHHHhhhcCCCcCC
Confidence 987644 78999999999999 9999999999999999999988888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC------C-----------CHHHHHHHHHHHHHHHcCCchHHHHHH
Q psy15159 168 PLQKSMDILGTQLSLYSFCIIGLIMLLGW---FQG------R-----------PVLDMFTIGVSLAVAAIPEGLPIVVTV 227 (238)
Q Consensus 168 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~------~-----------~~~~~~~~~l~~lv~~~P~~Lp~~~~~ 227 (238)
|||-++++++..+..+++.++.+++++.. +.+ + .+.+.|..+++++|+|+|+|||+++++
T Consensus 328 pLQ~kL~~lA~~Igk~Gl~~A~~~~~VL~~r~~~~~~~~~~~~~~~~~~~~~~~~v~~f~i~VTilVVAVPEGLPLAVTL 407 (1034)
T KOG0204|consen 328 PLQVKLNGLATQIGKIGLLFAALTFIVLVIRFFIGKTKIEGGTGTTWSDEYIQEFVKFFIIAVTILVVAVPEGLPLAVTL 407 (1034)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCccccHHHHHHHHHHhhheeEEEEEECCCCccHHHHH
Confidence 99999999999999999998877776653 221 1 245678888999999999999999999
Q ss_pred HHHHHHHHhhC
Q psy15159 228 TLALGVMRIYI 238 (238)
Q Consensus 228 ~l~~~~~rl~k 238 (238)
+++++++||.|
T Consensus 408 sLAys~kkMmk 418 (1034)
T KOG0204|consen 408 SLAYSMKKMMK 418 (1034)
T ss_pred HHHHHHHHHhc
Confidence 99999999975
No 27
>KOG0205|consensus
Probab=99.91 E-value=4.1e-25 Score=205.98 Aligned_cols=186 Identities=23% Similarity=0.280 Sum_probs=154.3
Q ss_pred hccceeeeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCc----------ceeeeeeccccccC
Q psy15159 17 SQGIDLAIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNG----------KGIDLAIDESSFTG 81 (238)
Q Consensus 17 ~~~~~l~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G----------~~~~~~vdES~LTG 81 (238)
+.+.--++||+.+-+..++|.+...+.++| | .++++++| ||||++.++.| +...+.+|+|.|||
T Consensus 109 iNsti~FveE~nAGn~aa~L~a~LA~KakVlRDGkw~E~eAs~l-VPGDIlsik~GdIiPaDaRLl~gD~LkiDQSAlTG 187 (942)
T KOG0205|consen 109 INSTISFIEENNAGNAAAALMAGLAPKAKVLRDGKWSEQEASIL-VPGDILSIKLGDIIPADARLLEGDPLKIDQSALTG 187 (942)
T ss_pred ecceeeeeeccccchHHHHHHhccCcccEEeecCeeeeeecccc-ccCceeeeccCCEecCccceecCCccccchhhhcC
Confidence 345556889999999999999999999998 6 88999999 99999999999 34578899999999
Q ss_pred CcceeeccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhc
Q psy15159 82 ETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQA 161 (238)
Q Consensus 82 Es~Pv~K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~ 161 (238)
||.||.|++++. +|+||.|.+|++ .++|++||.+|+.|+-.+++..
T Consensus 188 ESLpvtKh~gd~------------vfSgSTcKqGE~----------------------eaVViATg~~TF~GkAA~LVds 233 (942)
T KOG0205|consen 188 ESLPVTKHPGDE------------VFSGSTCKQGEI----------------------EAVVIATGVHTFFGKAAHLVDS 233 (942)
T ss_pred CccccccCCCCc------------eecccccccceE----------------------EEEEEEeccceeehhhHHhhcC
Confidence 999999999999 999999999999 9999999999999999999976
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 162 EEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGW-FQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
......||+-+..+..++.+...+..++...+.+ .+.+.....+..-+.+++..+|.|+|..++..++.|+-||+|
T Consensus 234 -t~~~GHFqkVLt~IGn~ci~si~~g~lie~~vmy~~q~R~~r~~i~nLlvllIGgiPiamPtVlsvTMAiGs~rLaq 310 (942)
T KOG0205|consen 234 -TNQVGHFQKVLTGIGNFCICSIALGMLIEITVMYPIQHRLYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQ 310 (942)
T ss_pred -CCCcccHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhheheeeecccccccceeeeehhhHHHHHHHh
Confidence 6778899999999998877655443333333333 333334344444444455559999999999999999999975
No 28
>KOG0203|consensus
Probab=99.90 E-value=1.8e-24 Score=206.29 Aligned_cols=191 Identities=25% Similarity=0.355 Sum_probs=176.4
Q ss_pred eeehhhhcccchhhhhccCCCccc--c---cccccCCceeeccEEEecCcc----------eeeeeeccccccCCcceee
Q psy15159 23 AIDESSFTGETEPATKVTSPMLKT--N---GHTSMRNIAFMGTLVRCGNGK----------GIDLAIDESSFTGETEPAT 87 (238)
Q Consensus 23 ~~~e~~~~~~~~~l~~~~~~~~~v--d---~~i~~~~L~v~GDiv~l~~G~----------~~~~~vdES~LTGEs~Pv~ 87 (238)
+.||.+..+-++++.++.|..+.| | +.+.++|| |+||+|.++.|+ +..+.+|+|+|||||.|..
T Consensus 144 ~~qe~ks~~im~sF~~l~P~~~~ViRdg~k~~i~~eel-VvGD~v~vk~GdrVPADiRiis~~g~~vdnsslTGesEP~~ 222 (1019)
T KOG0203|consen 144 YYQEAKSSKIMDSFKNLVPQQALVIRDGEKMTINAEEL-VVGDLVEVKGGDRVPADIRIISATGCKVDNSSLTGESEPQT 222 (1019)
T ss_pred CccchhhHHHHHHHhccchhhheeeecceeEEechhhc-ccccceeeccCCcccceeEEEEecceeEeccccccccCCcc
Confidence 457888999999999999999998 5 78999999 999999999993 3468899999999999999
Q ss_pred ccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCCCC
Q psy15159 88 KVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKT 167 (238)
Q Consensus 88 K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~ 167 (238)
.++...+++ +.+.+|+.|.+|.+++|.+ +++|.+||.+|.+|+|..+-..-+..++
T Consensus 223 ~~~~~t~~~--~~Et~Ni~f~st~~veG~~----------------------~givi~tGd~Tv~G~ia~l~~~~~~~~t 278 (1019)
T KOG0203|consen 223 RSPEFTHEN--PLETRNIAFFSTNCVEGTG----------------------RGIVIATGDRTVMGRIASLASGLEDGKT 278 (1019)
T ss_pred CCccccccC--chhheeeeeeeeEEecceE----------------------EEEEEecCCceEEeehhhhhccCCCCCC
Confidence 988776544 4999999999999999999 9999999999999999998877788999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 168 PLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 168 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
|+++..+++..++..+++.+.+..|.+....|.+|..++.+.++++++.+|+|||..++.++..-.+||+|
T Consensus 279 ~~~~ei~~fi~~it~vAi~~~i~fF~~~~~~gy~~l~avv~~i~iivAnvPeGL~~tvTv~LtltakrMa~ 349 (1019)
T KOG0203|consen 279 PIAKEIEHFIHIITGVAIFLGISFFILALILGYEWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAKRMAR 349 (1019)
T ss_pred cchhhhhchHHHHHHHHHHHHHHHHHHHHhhcchhHHHhhhhheeEEecCcCCccceehhhHHHHHHHHhh
Confidence 99999999999999999999988888888789999999999999999999999999999999999999986
No 29
>KOG0209|consensus
Probab=99.83 E-value=2.7e-21 Score=184.24 Aligned_cols=194 Identities=14% Similarity=0.181 Sum_probs=140.3
Q ss_pred ccchhhhhccCCCccc----c---cccccCCceeeccEEEecCc------------ceeeeeeccccccCCcceeeccCC
Q psy15159 31 GETEPATKVTSPMLKT----N---GHTSMRNIAFMGTLVRCGNG------------KGIDLAIDESSFTGETEPATKVTS 91 (238)
Q Consensus 31 ~~~~~l~~~~~~~~~v----d---~~i~~~~L~v~GDiv~l~~G------------~~~~~~vdES~LTGEs~Pv~K~~~ 91 (238)
+++.++++|......+ + +.+.++|| +|||+|.+..| ..+.+.||||||||||.|..|.+.
T Consensus 240 ~~lse~R~Mg~kpy~I~v~R~kKW~~l~seeL-lPgDvVSI~r~~ed~~vPCDllLL~GsciVnEaMLtGESvPl~KE~I 318 (1160)
T KOG0209|consen 240 RTLSEFRTMGNKPYTINVYRNKKWVKLMSEEL-LPGDVVSIGRGAEDSHVPCDLLLLRGSCIVNEAMLTGESVPLMKESI 318 (1160)
T ss_pred HHHHHHHhcCCCceEEEEEecCcceecccccc-CCCceEEeccCcccCcCCceEEEEecceeechhhhcCCCcccccccc
Confidence 4566777777655443 3 77899999 99999999997 356889999999999999999887
Q ss_pred CCCCC-----CCCCCCcceeeeccEEEeeeecc----cCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhcc
Q psy15159 92 PMLKT-----NGHTSMRNIAFMGTLVRCGNGKA----QLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAE 162 (238)
Q Consensus 92 ~~~~~-----~~~~~~~~~v~aGT~v~~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~ 162 (238)
...+. ....++.+++|+||.+++-.... ++.--|+ .+.|+|||++|..|++.|.+.++
T Consensus 319 e~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc-------------~a~VlrTGFeTSQGkLvRtilf~ 385 (1160)
T KOG0209|consen 319 ELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGC-------------VAYVLRTGFETSQGKLVRTILFS 385 (1160)
T ss_pred ccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCe-------------EEEEEeccccccCCceeeeEEec
Confidence 65443 24556899999999998753211 1112233 99999999999999999999997
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 163 EAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQG-RPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 163 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
.++-|.-.+..-.|..++..++++.+.+++.-+--.+ ++-...++-+.-++...+|+.||+-+++|...+...|+|
T Consensus 386 aervTaNn~Etf~FILFLlVFAiaAa~Yvwv~Gskd~~RsrYKL~LeC~LIlTSVvPpELPmELSmAVNsSL~ALak 462 (1160)
T KOG0209|consen 386 AERVTANNRETFIFILFLLVFAIAAAGYVWVEGSKDPTRSRYKLFLECTLILTSVVPPELPMELSMAVNSSLIALAK 462 (1160)
T ss_pred ceeeeeccHHHHHHHHHHHHHHHHhhheEEEecccCcchhhhheeeeeeEEEeccCCCCCchhhhHHHHHHHHHHHH
Confidence 7777766666555554444333333222211111112 344566667777788889999999999999999988876
No 30
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=99.74 E-value=1.1e-17 Score=170.13 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=126.1
Q ss_pred cccccCCceeeccEEEecCcce--------------eeeeeccccccCCcceeeccCCCCCC------------------
Q psy15159 48 GHTSMRNIAFMGTLVRCGNGKG--------------IDLAIDESSFTGETEPATKVTSPMLK------------------ 95 (238)
Q Consensus 48 ~~i~~~~L~v~GDiv~l~~G~~--------------~~~~vdES~LTGEs~Pv~K~~~~~~~------------------ 95 (238)
++++.+|| +|||+|.+++|+. +.+.||||.|||||.|+.|.+.....
T Consensus 97 ~~i~~~~l-~~GDiv~l~~g~~iPaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~ 175 (1057)
T TIGR01652 97 VEIPWKDL-RVGDIVKVKKDERIPADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECE 175 (1057)
T ss_pred EEeeeecc-cCCCEEEEcCCCcccceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhhHhhceEEEEEc
Confidence 67999999 9999999999931 45889999999999999998642110
Q ss_pred ------------------CCCCCCCcceeeeccEEEe-eeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHH
Q psy15159 96 ------------------TNGHTSMRNIAFMGTLVRC-GNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVF 156 (238)
Q Consensus 96 ------------------~~~~~~~~~~v~aGT~v~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~ 156 (238)
...+.+.+|++|.||.+.. |.+ .++|+.||.+|.+++.
T Consensus 176 ~p~~~l~~F~G~~~~~~~~~~~l~~~N~l~rGs~l~nt~~~----------------------~gvVvyTG~~Tk~~~n- 232 (1057)
T TIGR01652 176 QPNASLYSFQGNMTINGDRQYPLSPDNILLRGCTLRNTDWV----------------------IGVVVYTGHDTKLMRN- 232 (1057)
T ss_pred CCCCcceEEEEEEEECCCCcccCCHHHhHhcCCEecCCCeE----------------------EEEEEEEchhhhhhhc-
Confidence 1124567899999999999 899 9999999999987664
Q ss_pred HhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC----CCH---------------HHHHHHHHHHHHHH
Q psy15159 157 KMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGW-FQG----RPV---------------LDMFTIGVSLAVAA 216 (238)
Q Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~----~~~---------------~~~~~~~l~~lv~~ 216 (238)
....+.+++++++.++++..++..+.++++++.+++.. +.+ ..| ...+.+.+.++..+
T Consensus 233 --~~~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~L~~~~ 310 (1057)
T TIGR01652 233 --ATQAPSKRSRLEKELNFLIIILFCLLFVLCLISSVGAGIWNDAHGKDLWYIRLDVSERNAAANGFFSFLTFLILFSSL 310 (1057)
T ss_pred --CCCCcccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHheecccCCCccceecCcccccchhHHHHHHHHHHHHHhhh
Confidence 33456678999999999999888777776666555432 221 122 23677888999999
Q ss_pred cCCchHHHHHHHHHHHH
Q psy15159 217 IPEGLPIVVTVTLALGV 233 (238)
Q Consensus 217 ~P~~Lp~~~~~~l~~~~ 233 (238)
+|.+||+.+.++....+
T Consensus 311 IPisL~v~l~l~~~~~~ 327 (1057)
T TIGR01652 311 IPISLYVSLELVKSVQA 327 (1057)
T ss_pred cceeeeehHHHHHHHHH
Confidence 99999999999999888
No 31
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.68 E-value=5.8e-16 Score=142.27 Aligned_cols=197 Identities=19% Similarity=0.242 Sum_probs=143.1
Q ss_pred hhHHHHHhhhhhhhccceeeeehhhhcccchhhhhccCCC-ccc---c---cccccCCceeeccEEEecCcc--------
Q psy15159 4 VFLTLFFTKIFRPSQGIDLAIDESSFTGETEPATKVTSPM-LKT---N---GHTSMRNIAFMGTLVRCGNGK-------- 68 (238)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~l~~~~~~~-~~v---d---~~i~~~~L~v~GDiv~l~~G~-------- 68 (238)
++++++|+..|..+...- -|-+.+...++|++..... ++. | +.+++.+| ..||+|.++.||
T Consensus 68 i~~~L~fTVlFANfaEa~---AEGrgKAqAdsLr~~~~~~~A~~l~~~g~~~~v~st~L-k~gdiV~V~age~IP~DGeV 143 (681)
T COG2216 68 ITIILWFTVLFANFAEAV---AEGRGKAQADSLRKTKTETIARLLRADGSIEMVPATEL-KKGDIVLVEAGEIIPSDGEV 143 (681)
T ss_pred HHHHHHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHhcCCCCeeecccccc-ccCCEEEEecCCCccCCCeE
Confidence 445555666665554211 2334444455555543332 222 2 78999999 999999999993
Q ss_pred -eeeeeeccccccCCcceeeccCCCCCCCCCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeC
Q psy15159 69 -GIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTG 147 (238)
Q Consensus 69 -~~~~~vdES~LTGEs~Pv~K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG 147 (238)
.+...||||.+||||-||-|.+|..... +-.||.+++... +.++++.-
T Consensus 144 IeG~asVdESAITGESaPViresGgD~ss---------VtGgT~v~SD~l----------------------~irita~p 192 (681)
T COG2216 144 IEGVASVDESAITGESAPVIRESGGDFSS---------VTGGTRVLSDWL----------------------KIRITANP 192 (681)
T ss_pred EeeeeecchhhccCCCcceeeccCCCccc---------ccCCcEEeeeeE----------------------EEEEEcCC
Confidence 3467899999999999999999855333 999999999999 99999999
Q ss_pred cchhhHhHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCchHHHHH
Q psy15159 148 EKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQ-GRPVLDMFTIGVSLAVAAIPEGLPIVVT 226 (238)
Q Consensus 148 ~~T~~g~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~lv~~~P~~Lp~~~~ 226 (238)
.+|++.|++.+++.++.+|||.+-.+..+..-++.+-+++..-.+.+..+. |... .+..-++++|+.+|-.++-.++
T Consensus 193 G~sFlDrMI~LVEgA~R~KTPNEIAL~iLL~~LTliFL~~~~Tl~p~a~y~~g~~~--~i~~LiALlV~LIPTTIGgLLs 270 (681)
T COG2216 193 GETFLDRMIALVEGAERQKTPNEIALTILLSGLTLIFLLAVATLYPFAIYSGGGAA--SVTVLVALLVCLIPTTIGGLLS 270 (681)
T ss_pred CccHHHHHHHHhhchhccCChhHHHHHHHHHHHHHHHHHHHHhhhhHHHHcCCCCc--CHHHHHHHHHHHhcccHHHHHH
Confidence 999999999999999999999998888887777765544433333333333 3333 2344567899999999988877
Q ss_pred HHHHHHHHHhh
Q psy15159 227 VTLALGVMRIY 237 (238)
Q Consensus 227 ~~l~~~~~rl~ 237 (238)
.-=-.|+.|+.
T Consensus 271 AIGIAGMdRv~ 281 (681)
T COG2216 271 AIGIAGMDRVT 281 (681)
T ss_pred HhhhhhhhHhh
Confidence 66666777764
No 32
>PLN03190 aminophospholipid translocase; Provisional
Probab=99.28 E-value=4.1e-11 Score=122.74 Aligned_cols=164 Identities=16% Similarity=0.243 Sum_probs=106.7
Q ss_pred cccccCCceeeccEEEecCcc--------------eeeeeeccccccCCcceeeccCCCCCC----C-----------CC
Q psy15159 48 GHTSMRNIAFMGTLVRCGNGK--------------GIDLAIDESSFTGETEPATKVTSPMLK----T-----------NG 98 (238)
Q Consensus 48 ~~i~~~~L~v~GDiv~l~~G~--------------~~~~~vdES~LTGEs~Pv~K~~~~~~~----~-----------~~ 98 (238)
++++.++| ++||+|.+++|+ .+.+.||+|.||||+.|+.|.+++... + .|
T Consensus 182 ~~i~~~~i-~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~P 260 (1178)
T PLN03190 182 QEKKWKDI-RVGEIIKIQANDTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEKINGLIKCEKP 260 (1178)
T ss_pred EEEeHHHC-CCCCEEEECCCCEeeeeEEEEeccCCCceEEEEccccCCeeeeeEecccchhhhcchhhhhceEEEEEeCC
Confidence 77999999 999999999993 245789999999999999998764311 0 00
Q ss_pred ------------------CCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhh
Q psy15159 99 ------------------HTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQ 160 (238)
Q Consensus 99 ------------------~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~ 160 (238)
+.+.+|++.-|+.+... .-..++|+.||.+|. +...-.
T Consensus 261 n~~l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT---------------------~~i~GvVVYTG~dTK---~~~N~~ 316 (1178)
T PLN03190 261 NRNIYGFQANMEVDGKRLSLGPSNIILRGCELKNT---------------------AWAIGVAVYCGRETK---AMLNNS 316 (1178)
T ss_pred CccceeEEEEEEECCCcccCCccceeeccceecCC---------------------ceEEEEEEEechhhh---HhhcCC
Confidence 22223344444443332 112999999999998 222223
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhc-CC------CH--------------------HH-H--HHH
Q psy15159 161 AEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLG--WFQ-GR------PV--------------------LD-M--FTI 208 (238)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~-~~------~~--------------------~~-~--~~~ 208 (238)
.+..+.+++++.++++..++..+.++++++..++. |.. +. +| .. . +..
T Consensus 317 ~~~~K~S~le~~~N~~vi~l~~i~~~l~~i~~i~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 396 (1178)
T PLN03190 317 GAPSKRSRLETRMNLEIIILSLFLIALCTIVSVCAAVWLRRHRDELDTIPFYRRKDFSEGGPKNYNYYGWGWEIFFTFLM 396 (1178)
T ss_pred CCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence 34457799999999999888877776665554432 211 10 00 11 1 222
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHh
Q psy15159 209 GVSLAVAAIPEGLPIVVTVTLALGVMRI 236 (238)
Q Consensus 209 ~l~~lv~~~P~~Lp~~~~~~l~~~~~rl 236 (238)
.+.++-..+|.+|++.+.+.-..-+.++
T Consensus 397 ~lil~~~~IPISL~Vtleivk~~qa~~I 424 (1178)
T PLN03190 397 SVIVFQIMIPISLYISMELVRVGQAYFM 424 (1178)
T ss_pred HHHHHHhhcceeeeeeHHHHHHHHHHHH
Confidence 2345557899999999988874434433
No 33
>KOG0210|consensus
Probab=97.60 E-value=0.00035 Score=67.58 Aligned_cols=154 Identities=18% Similarity=0.216 Sum_probs=108.2
Q ss_pred cccccCCceeeccEEEecCcc--------------eeeeeeccccccCCcceeeccCCC-----CCC-------------
Q psy15159 48 GHTSMRNIAFMGTLVRCGNGK--------------GIDLAIDESSFTGETEPATKVTSP-----MLK------------- 95 (238)
Q Consensus 48 ~~i~~~~L~v~GDiv~l~~G~--------------~~~~~vdES~LTGEs~Pv~K~~~~-----~~~------------- 95 (238)
...+++++ .+||+|.++.++ ++.+-+-.-.|-||+.--.|-|-+ ..+
T Consensus 174 ~~~~Ss~i-~vGDvi~v~K~~RVPADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P 252 (1051)
T KOG0210|consen 174 RREPSSDI-KVGDVIIVHKDERVPADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKP 252 (1051)
T ss_pred cccccccc-ccccEEEEecCCcCCcceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEeccCc
Confidence 33489999 999999999993 335555555688998644443221 000
Q ss_pred --------------C---CCCCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHh
Q psy15159 96 --------------T---NGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKM 158 (238)
Q Consensus 96 --------------~---~~~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~ 158 (238)
+ ..+.+-.|+++++|.+.+|.. .++|+-||.+|.. ..+.
T Consensus 253 ~kdIh~F~Gt~~~~d~~~~~~LsventLWanTVvAs~t~----------------------~gvVvYTG~dtRs--vMNt 308 (1051)
T KOG0210|consen 253 QKDIHSFVGTFTITDSDKPESLSVENTLWANTVVASGTA----------------------IGVVVYTGRDTRS--VMNT 308 (1051)
T ss_pred chhhHhhEEEEEEecCCCCCcccccceeeeeeeEecCcE----------------------EEEEEEecccHHH--Hhcc
Confidence 0 125567899999999999999 9999999999863 1111
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHH
Q psy15159 159 MQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVT 228 (238)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~ 228 (238)
..++.+-.-++..++.+.+.+...++++++++.....+ +.+|...+.+.+-++-..+|-.|-+-+-++
T Consensus 309 -s~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~~~g~-~~~wyi~~~RfllLFS~IIPISLRvnlDma 376 (1051)
T KOG0210|consen 309 -SRPRSKVGLLELEINGLTKILFCFVLVLSIVMVAMKGF-GSDWYIYIIRFLLLFSSIIPISLRVNLDMA 376 (1051)
T ss_pred -CCcccccceeeeecccHHHHHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHhhhceeEEEEehhHH
Confidence 12333345567788888888888888877666554443 468988999999998889998876655544
No 34
>KOG0206|consensus
Probab=92.96 E-value=0.46 Score=49.38 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=76.0
Q ss_pred ccccCCceeeccEEEecCc--------------ceeeeeeccccccCCcceeeccCCCCCCC------------------
Q psy15159 49 HTSMRNIAFMGTLVRCGNG--------------KGIDLAIDESSFTGETEPATKVTSPMLKT------------------ 96 (238)
Q Consensus 49 ~i~~~~L~v~GDiv~l~~G--------------~~~~~~vdES~LTGEs~Pv~K~~~~~~~~------------------ 96 (238)
+...+++ .+||+|.+..+ +.+.|.|.-+.|-||+-.-.|...+....
T Consensus 128 ~~~wk~~-~vGd~v~v~~~~~~paD~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~ 206 (1151)
T KOG0206|consen 128 EKKWKDV-RVGDIVRVEKDEFVPADLLLLSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECED 206 (1151)
T ss_pred eecccee-eeeeEEEeccCCccccceEEecCCCCCceeEEEEeecCCccccceeeehhhhhcccccccccccCCceEEcC
Confidence 3444555 55555555555 34578899999999987766643211000
Q ss_pred ----------------CC-CCCCcceeeeccEEEeeeecccCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhh
Q psy15159 97 ----------------NG-HTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMM 159 (238)
Q Consensus 97 ----------------~~-~~~~~~~v~aGT~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~ 159 (238)
.. +.+.+|++.-|+.+....- ..+.|+-||.+|..++= -
T Consensus 207 p~~~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~~---------------------v~G~vv~tG~dtK~~~n---~ 262 (1151)
T KOG0206|consen 207 PNANLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTEW---------------------VYGVVVFTGHDTKLMQN---S 262 (1151)
T ss_pred CcccHhhhhhheeeccCCCCCcHHHcccCCceeccCcE---------------------EEEEEEEcCCcchHHHh---c
Confidence 01 4555666666766665433 28899999999987653 2
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy15159 160 QAEEAPKTPLQKSMDILGTQLSLYSFCIIGLI 191 (238)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 191 (238)
..++..++++++..+.....+..+.+.++++.
T Consensus 263 ~~~~~Krs~ier~~n~~i~~~~~~l~~~~~~~ 294 (1151)
T KOG0206|consen 263 GKPPSKRSRIERKMNKIIILLFVLLILMCLIS 294 (1151)
T ss_pred CCCccccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 34667788999999988877776665555443
No 35
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=70.35 E-value=19 Score=25.30 Aligned_cols=24 Identities=17% Similarity=-0.050 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q psy15159 167 TPLQKSMDILGTQLSLYSFCIIGL 190 (238)
Q Consensus 167 ~~l~~~~~~~~~~l~~~~~~~~~~ 190 (238)
.+=|+..+++.+++..+..+++.+
T Consensus 3 f~gQ~~ae~l~~~il~~~~iisfi 26 (76)
T PF06645_consen 3 FKGQRLAEKLMQYILIISAIISFI 26 (76)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 455888999988887665555433
No 36
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=61.35 E-value=9.5 Score=27.36 Aligned_cols=26 Identities=19% Similarity=0.029 Sum_probs=18.3
Q ss_pred CCceeeccEEEecCccee-eeeeccccc
Q psy15159 53 RNIAFMGTLVRCGNGKGI-DLAIDESSF 79 (238)
Q Consensus 53 ~~L~v~GDiv~l~~G~~~-~~~vdES~L 79 (238)
++| .|||-|....|.-+ ...+||..+
T Consensus 36 ~~L-~~Gd~VvT~gGi~G~V~~i~d~~v 62 (84)
T TIGR00739 36 ESL-KKGDKVLTIGGIIGTVTKIAENTI 62 (84)
T ss_pred HhC-CCCCEEEECCCeEEEEEEEeCCEE
Confidence 678 99999999999433 345665433
No 37
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=58.80 E-value=64 Score=30.50 Aligned_cols=147 Identities=17% Similarity=0.111 Sum_probs=77.2
Q ss_pred c-cccccCCceeeccEEEecCccee--eeeecccc----ccCCcceeeccCCCCCCCCCCCCCcceeeeccEEEeeeecc
Q psy15159 47 N-GHTSMRNIAFMGTLVRCGNGKGI--DLAIDESS----FTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKA 119 (238)
Q Consensus 47 d-~~i~~~~L~v~GDiv~l~~G~~~--~~~vdES~----LTGEs~Pv~K~~~~~~~~~~~~~~~~~v~aGT~v~~G~~~~ 119 (238)
| ..+...|. +|-|.+.++..-.. .....||. -.|+.. ..+.. .+.|+....-....
T Consensus 56 Div~v~~G~~-iP~Dg~vl~g~~~vdes~LTGEs~pv~k~~g~~v----~~gs~------------~~~G~~~~~v~~~~ 118 (499)
T TIGR01494 56 DIVLVKSGEI-VPADGVLLSGSCFVDESNLTGESVPVLKTAGDAV----FAGTY------------VFNGTLIVVVSATG 118 (499)
T ss_pred CEEEECCCCE-eeeeEEEEEccEEEEcccccCCCCCeeeccCCcc----ccCcE------------EeccEEEEEEEEec
Confidence 6 77889999 99999998765111 12222332 124422 33444 89999866533311
Q ss_pred cCCCCccccchhhhcccceeeEEEEEeCcchhhHhHHHhhhccCCCCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh-
Q psy15159 120 QLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSM-DILGTQLSLYSFCIIGLIMLLGWF- 197 (238)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~- 197 (238)
.. ++..+ .+.++.+|.++. ..+ .....+.. ..+......++++..++.+..++.
T Consensus 119 ~~----------s~~~~---i~~~v~~~~~~k-~~~----------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~ 174 (499)
T TIGR01494 119 PN----------TFGGK---IAVVVYTGFETK-TPL----------QPKLDRLSDIIFILFVLLIALAVFLFWAIGLWDP 174 (499)
T ss_pred cc----------cHHHH---HHHHHHhcCCCC-Cch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 00 00000 222334444431 111 22233333 344444444444444333322211
Q ss_pred --cCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q psy15159 198 --QGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVM 234 (238)
Q Consensus 198 --~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~ 234 (238)
....+...+...+...-++.|.++|++...+.....+
T Consensus 175 ~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~ 213 (499)
T TIGR01494 175 NSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAK 213 (499)
T ss_pred ccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 1235667777788888899999999999988776654
No 38
>KOG4112|consensus
Probab=44.82 E-value=95 Score=22.88 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=18.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHH
Q psy15159 164 APKTPLQKSMDILGTQLSLYSFCII 188 (238)
Q Consensus 164 ~~~~~l~~~~~~~~~~l~~~~~~~~ 188 (238)
.-+.+-|+.++|+.+.+..++.+++
T Consensus 15 ~iDf~gQkkaEr~~q~ilti~aiVg 39 (101)
T KOG4112|consen 15 PIDFPGQKKAERFQQLILTIGAIVG 39 (101)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHH
Confidence 3467779999999988776555444
No 39
>PRK11479 hypothetical protein; Provisional
Probab=40.33 E-value=20 Score=31.59 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=17.0
Q ss_pred cccccCCceeeccEEEecCc
Q psy15159 48 GHTSMRNIAFMGTLVRCGNG 67 (238)
Q Consensus 48 ~~i~~~~L~v~GDiv~l~~G 67 (238)
..|+.++| .|||+|..+.+
T Consensus 58 ~~Vs~~~L-qpGDLVFfst~ 76 (274)
T PRK11479 58 KEITAPDL-KPGDLLFSSSL 76 (274)
T ss_pred cccChhhC-CCCCEEEEecC
Confidence 68999999 99999998765
No 40
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=38.71 E-value=38 Score=25.07 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=17.0
Q ss_pred CCceeeccEEEecCcc-eeeeeecccc
Q psy15159 53 RNIAFMGTLVRCGNGK-GIDLAIDESS 78 (238)
Q Consensus 53 ~~L~v~GDiv~l~~G~-~~~~~vdES~ 78 (238)
++| .+||-|....|. +....++|..
T Consensus 42 ~sL-~kGD~VvT~gGi~G~V~~v~d~~ 67 (97)
T COG1862 42 NSL-KKGDEVVTIGGIVGTVTKVGDDT 67 (97)
T ss_pred Hhc-cCCCEEEEcCCeEEEEEEEecCc
Confidence 567 889999888883 3344565544
No 41
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=38.14 E-value=35 Score=25.79 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=12.2
Q ss_pred CCceeeccEEEecCcc
Q psy15159 53 RNIAFMGTLVRCGNGK 68 (238)
Q Consensus 53 ~~L~v~GDiv~l~~G~ 68 (238)
++| .|||.|.-..|.
T Consensus 37 ~~L-k~GD~VvT~gGi 51 (109)
T PRK05886 37 ESL-QPGDRVHTTSGL 51 (109)
T ss_pred Hhc-CCCCEEEECCCe
Confidence 567 889988888883
No 42
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=37.36 E-value=18 Score=25.66 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=0.7
Q ss_pred CCceeeccEEEecCcc-eeeeeeccccccCCc
Q psy15159 53 RNIAFMGTLVRCGNGK-GIDLAIDESSFTGET 83 (238)
Q Consensus 53 ~~L~v~GDiv~l~~G~-~~~~~vdES~LTGEs 83 (238)
++| .|||-|....|. +....+|+-.++=|.
T Consensus 35 ~~L-k~Gd~VvT~gGi~G~V~~i~~~~v~lei 65 (82)
T PF02699_consen 35 ASL-KPGDEVVTIGGIYGTVVEIDDDTVVLEI 65 (82)
T ss_dssp G-------------------------------
T ss_pred HcC-CCCCEEEECCcEEEEEEEEeCCEEEEEE
Confidence 678 999999999993 223334544444333
No 43
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=36.75 E-value=31 Score=25.90 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=16.4
Q ss_pred CCceeeccEEEecCccee-eeeecc
Q psy15159 53 RNIAFMGTLVRCGNGKGI-DLAIDE 76 (238)
Q Consensus 53 ~~L~v~GDiv~l~~G~~~-~~~vdE 76 (238)
++| .+||.|....|.-+ ...+|+
T Consensus 51 ~~L-k~Gd~VvT~gGi~G~Vv~i~~ 74 (106)
T PRK05585 51 SSL-AKGDEVVTNGGIIGKVTKVSE 74 (106)
T ss_pred Hhc-CCCCEEEECCCeEEEEEEEeC
Confidence 677 99999999999433 344555
No 44
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=35.83 E-value=2.2e+02 Score=25.15 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhh
Q psy15159 199 GRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIY 237 (238)
Q Consensus 199 ~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~ 237 (238)
|.++...+.+.+-.+-..++..+|+++-++......||.
T Consensus 38 ~~~~~~i~~~~~~~lP~~l~~~lP~~~lia~~~~l~~L~ 76 (354)
T PF03739_consen 38 GVPFSDILKYILYNLPYILSLILPLAFLIAVLLTLGRLS 76 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777766666667777788888888888777775
No 45
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=32.45 E-value=2.9e+02 Score=26.50 Aligned_cols=68 Identities=10% Similarity=-0.000 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q psy15159 167 TPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMR 235 (238)
Q Consensus 167 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~r 235 (238)
..+++....+......++++..++.++..-+ ...+..++...+...-++.|.+.|+++..++....++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~svlv~~~P~aL~la~~~~~~~~~~~~~k~ 230 (536)
T TIGR01512 163 RFIDRFARYYTPVVLAIALAIWLVPGLLKRW-PFWVYRALVLLVVASPCALVISAPAAYLSAISAAARH 230 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHC
Confidence 3455556666666555555444433322211 1145556666777788889999999999998877654
No 46
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=31.37 E-value=2.8e+02 Score=23.02 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=37.3
Q ss_pred HhHHHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHH---HHHHHHHHHHHcCCchHHHHHHH
Q psy15159 153 GEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGLIMLLGW-FQGRPVLDM---FTIGVSLAVAAIPEGLPIVVTVT 228 (238)
Q Consensus 153 g~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~l~~lv~~~P~~Lp~~~~~~ 228 (238)
|.++|-+...+...++-..-.+.++-.-..+++..++...+..- ....++... +...-+++-.+|-.||-+++..+
T Consensus 23 G~VLRhv~~~~~av~~eY~vsNiisv~Sgll~I~~GI~AIvlSrnl~~~~L~W~Ll~~S~ln~LlSaAc~vGL~~ai~~T 102 (188)
T PF12304_consen 23 GTVLRHVSNPKDAVTLEYAVSNIISVTSGLLSIICGIVAIVLSRNLRNRPLHWTLLVVSLLNALLSAACAVGLLLAISLT 102 (188)
T ss_pred hHHHHhhccccccceehhhHHHHHHHHHHHHHHHHhHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566665555555554444444443333333333333222221 112222211 11222455556666666666666
Q ss_pred HHHHHHHh
Q psy15159 229 LALGVMRI 236 (238)
Q Consensus 229 l~~~~~rl 236 (238)
++..=++|
T Consensus 103 v~~~Gr~L 110 (188)
T PF12304_consen 103 VANQGRNL 110 (188)
T ss_pred HHhCchhH
Confidence 65544443
No 47
>PRK13747 putative mercury resistance protein; Provisional
Probab=27.65 E-value=50 Score=23.17 Aligned_cols=16 Identities=50% Similarity=0.683 Sum_probs=11.9
Q ss_pred HHHHHcCCchHHHHHH
Q psy15159 212 LAVAAIPEGLPIVVTV 227 (238)
Q Consensus 212 ~lv~~~P~~Lp~~~~~ 227 (238)
+.+..|||=||+..++
T Consensus 23 lAvLTCPCHLpiLa~l 38 (78)
T PRK13747 23 LAVLTCPCHLPILAAV 38 (78)
T ss_pred HHHhcCcchHHHHHHH
Confidence 4467899999876554
No 48
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=26.89 E-value=3.3e+02 Score=27.95 Aligned_cols=34 Identities=12% Similarity=0.023 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Q psy15159 201 PVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVM 234 (238)
Q Consensus 201 ~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~ 234 (238)
.+..++..++...-.+.|.++++++..+...-.+
T Consensus 286 ~~~~al~l~v~~iP~~Lp~~vt~~la~g~~~mak 319 (867)
T TIGR01524 286 AFLFALAVAVGLTPEMLPMIVSSNLAKGAINMSK 319 (867)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHh
Confidence 3556677778888888899999999888765443
No 49
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=26.63 E-value=3.2e+02 Score=28.16 Aligned_cols=34 Identities=6% Similarity=0.063 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Q psy15159 202 VLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMR 235 (238)
Q Consensus 202 ~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~r 235 (238)
+...+...+..+-.+.|.++|+++..+.....++
T Consensus 275 ~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r~ak~ 308 (884)
T TIGR01522 275 FTISVSLAVAAIPEGLPIIVTVTLALGVLRMSKK 308 (884)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHhhc
Confidence 4556667777778889999999999987766543
No 50
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=26.58 E-value=39 Score=22.07 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=10.1
Q ss_pred eeccEEEecCc
Q psy15159 57 FMGTLVRCGNG 67 (238)
Q Consensus 57 v~GDiv~l~~G 67 (238)
.+||+|.++.|
T Consensus 2 ~~GDvV~LKSG 12 (53)
T PF09926_consen 2 KIGDVVQLKSG 12 (53)
T ss_pred CCCCEEEEccC
Confidence 58999999999
No 51
>COG3838 VirB2 Type IV secretory pathway, VirB2 components (pilins) [Intracellular trafficking and secretion]
Probab=25.62 E-value=2.5e+02 Score=21.24 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=24.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHH
Q psy15159 165 PKTPLQKSMDILGTQLSLYSFCIIGLIMLLGWFQG-RPVLDMFTIGVSL 212 (238)
Q Consensus 165 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 212 (238)
..+++|+..+-+..-+.....+++++..-+.+..| .+|...+..-+.+
T Consensus 38 ~~~~lq~I~~sltGp~A~~iAVi~Ii~~Gi~~~fG~~~~~r~~~vV~gi 86 (108)
T COG3838 38 WETPLQQILQSLTGPVAKTIAVIGIIAIGIMLIFGRLDWRRALQVVIGI 86 (108)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45667766666655555544444444444444333 3565555444333
No 52
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=25.27 E-value=3.3e+02 Score=28.51 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q psy15159 168 PLQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGV 233 (238)
Q Consensus 168 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~ 233 (238)
.+++....+..+...+++++.++.++..+.....+...+...+..+-.+.|..+++++..+...-.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~m~ 326 (997)
T TIGR01106 261 EIEHFIHIITGVAVFLGVSFFILSLILGYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMA 326 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 455556666665555544444333332211112345566666777788899999999888776544
No 53
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=25.11 E-value=89 Score=23.75 Aligned_cols=15 Identities=27% Similarity=0.116 Sum_probs=11.1
Q ss_pred CCceeeccEEEecCcc
Q psy15159 53 RNIAFMGTLVRCGNGK 68 (238)
Q Consensus 53 ~~L~v~GDiv~l~~G~ 68 (238)
++| .+||-|.-..|.
T Consensus 35 ~sL-k~GD~VvT~GGi 49 (113)
T PRK06531 35 NAI-QKGDEVVTIGGL 49 (113)
T ss_pred Hhc-CCCCEEEECCCc
Confidence 456 888888888883
No 54
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=23.16 E-value=3.9e+02 Score=23.81 Aligned_cols=38 Identities=11% Similarity=-0.003 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhC
Q psy15159 201 PVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRIYI 238 (238)
Q Consensus 201 ~~~~~~~~~l~~lv~~~P~~Lp~~~~~~l~~~~~rl~k 238 (238)
++...+.+.+-.+-......+|+++-++...+..||++
T Consensus 46 ~~~~~~~~~~~~lP~~l~~~lP~a~lla~l~~l~~L~~ 83 (356)
T PRK15071 46 DALGAGLYTLLSVPKDIEIFFPMAALLGALIGLGMLAS 83 (356)
T ss_pred cHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444433333334445566666666666666653
No 55
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=22.68 E-value=70 Score=22.35 Aligned_cols=16 Identities=44% Similarity=0.640 Sum_probs=12.0
Q ss_pred HHHHHcCCchHHHHHH
Q psy15159 212 LAVAAIPEGLPIVVTV 227 (238)
Q Consensus 212 ~lv~~~P~~Lp~~~~~ 227 (238)
+.+..|||-||+..++
T Consensus 23 lA~lTCPCHLpil~~v 38 (75)
T PF05052_consen 23 LALLTCPCHLPILAPV 38 (75)
T ss_pred HHHhhCcchHHHHHHH
Confidence 3455799999998763
No 56
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=21.84 E-value=48 Score=25.61 Aligned_cols=18 Identities=6% Similarity=-0.154 Sum_probs=14.6
Q ss_pred cccccCCceeeccEEEecC
Q psy15159 48 GHTSMRNIAFMGTLVRCGN 66 (238)
Q Consensus 48 ~~i~~~~L~v~GDiv~l~~ 66 (238)
..++.+++ .|||+|..+.
T Consensus 70 ~~v~~~~~-qpGDlvff~~ 87 (134)
T TIGR02219 70 VPVPCDAA-QPGDVLVFRW 87 (134)
T ss_pred cccchhcC-CCCCEEEEee
Confidence 35677899 9999999863
No 57
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=21.79 E-value=68 Score=21.99 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=17.9
Q ss_pred cCCceeeccEEEecCcceeeeeecc
Q psy15159 52 MRNIAFMGTLVRCGNGKGIDLAIDE 76 (238)
Q Consensus 52 ~~~L~v~GDiv~l~~G~~~~~~vdE 76 (238)
...+ .+||.+.+.+|-.+.-.+.|
T Consensus 45 ~~~~-~aGD~~~~p~G~~~~w~v~~ 68 (74)
T PF05899_consen 45 TVTF-KAGDAFFLPKGWTGTWEVRE 68 (74)
T ss_dssp EEEE-ETTEEEEE-TTEEEEEEEEE
T ss_pred EEEE-cCCcEEEECCCCEEEEEECe
Confidence 3678 99999999999766665554
No 58
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=21.61 E-value=1.1e+02 Score=17.37 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=14.0
Q ss_pred eccEEEecCc-----ceeeeeecccc
Q psy15159 58 MGTLVRCGNG-----KGIDLAIDESS 78 (238)
Q Consensus 58 ~GDiv~l~~G-----~~~~~~vdES~ 78 (238)
+||.|.+-.| .+....+|.+-
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i~~~~ 26 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEIDRSK 26 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEEETTT
T ss_pred CCCEEEEeEcCCCCceEEEEEEECCC
Confidence 6999999988 33345565543
Done!