RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15159
(238 letters)
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 171 bits (436), Expect = 3e-49
Identities = 57/176 (32%), Positives = 76/176 (43%), Gaps = 33/176 (18%)
Query: 71 DLAIDESSFTGETEPATKVTSPMLKTN-GHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTS 129
L +D+S TGE+ K T P+ + +N+ F GT + G
Sbjct: 173 TLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAL----------- 221
Query: 130 MINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIG 189
G+V TG +E G++ M A E KTPLQ+ +D G QLS I
Sbjct: 222 -----------GIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICV 270
Query: 190 LIMLLGWFQG----------RPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMR 235
+ L+ R + F I V+LAVAAIPEGLP V+T LALG R
Sbjct: 271 AVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRR 326
Score = 56.1 bits (136), Expect = 2e-09
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 21 DLAIDESSFTGETEPATKVTSPMLKTN-GHTSMRNIAFMGTLVRCGNGKGI 70
L +D+S TGE+ K T P+ + +N+ F GT + G GI
Sbjct: 173 TLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGI 223
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 161 bits (410), Expect = 1e-45
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 24/165 (14%)
Query: 71 DLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSM 130
+D SS TGE+EP T+ ++ T RNIAF T+ G +
Sbjct: 220 GRKVDNSSLTGESEPQTRSPECTHESPLET--RNIAFFSTMCLEGTAQ------------ 265
Query: 131 INYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGL 190
G+VVNTG+++ G + + E KTP+ ++ ++ +
Sbjct: 266 ----------GLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGAT 315
Query: 191 IMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMR 235
++ G L +++ VA +PEGL VTV L+L R
Sbjct: 316 FFIVAMCIGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKR 360
Score = 55.0 bits (133), Expect = 6e-09
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 21 DLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKGI 70
+D SS TGE+EP T+ ++ T RNIAF T+ G +G+
Sbjct: 220 GRKVDNSSLTGESEPQTRSPECTHESPLET--RNIAFFSTMCLEGTAQGL 267
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 160 bits (408), Expect = 2e-45
Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 24/165 (14%)
Query: 71 DLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSM 130
+D SS TGE+EP T+ + T RNIAF T G +
Sbjct: 215 GCKVDNSSLTGESEPQTRSPEFSSENPLET--RNIAFFSTNCVEGTAR------------ 260
Query: 131 INYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGL 190
GVVV TG+++ G + + E +TP+ ++ ++ + +
Sbjct: 261 ----------GVVVYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVS 310
Query: 191 IMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMR 235
+L G L+ + + VA +PEGL VTV L L R
Sbjct: 311 FFILSLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKR 355
Score = 54.2 bits (131), Expect = 1e-08
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 21 DLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKGI 70
+D SS TGE+EP T+ + T RNIAF T G +G+
Sbjct: 215 GCKVDNSSLTGESEPQTRSPEFSSENPLET--RNIAFFSTNCVEGTARGV 262
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 138 bits (349), Expect = 1e-37
Identities = 29/165 (17%), Positives = 63/165 (38%), Gaps = 34/165 (20%)
Query: 71 DLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDYTSM 130
L +D+S+ TGE+ K + F + V+ G
Sbjct: 222 FLQVDQSALTGESLAVDK------------HKGDQVFASSAVKRGEAFV----------- 258
Query: 131 INYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSFCIIGL 190
V+ TG+ + G ++ A + ++ +GT L + + +
Sbjct: 259 -----------VITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLI 307
Query: 191 IMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMR 235
+ + +++ P++ + +++ + +P GLP VVT T+A+G
Sbjct: 308 VWVSSFYRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAY 352
Score = 44.2 bits (105), Expect = 2e-05
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 12/63 (19%)
Query: 21 DLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKGIDLAIDESSFT 80
L +D+S+ TGE+ K + F + V+ G + A +++F
Sbjct: 222 FLQVDQSALTGESLAVDK------------HKGDQVFASSAVKRGEAFVVITATGDNTFV 269
Query: 81 GET 83
G
Sbjct: 270 GRA 272
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 128 bits (325), Expect = 2e-34
Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 36/169 (21%)
Query: 68 KGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKAQLNHPEDY 127
+G L +D+S+ TGE+ P TK F G+ + G +A
Sbjct: 170 EGDPLKVDQSALTGESLPVTKHPG------------QEVFSGSTCKQGEIEA-------- 209
Query: 128 TSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLY-SFC 186
VV+ TG + FG+ ++ + QK + +G +
Sbjct: 210 --------------VVIATGVHTFFGKAAHLVDSTN-QVGHFQKVLTAIGNFCICSIAIG 254
Query: 187 IIGLIMLLGWFQGRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMR 235
++ I+++ Q R D + L + IP +P V++VT+A+G R
Sbjct: 255 MVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHR 303
Score = 46.1 bits (110), Expect = 4e-06
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Query: 18 QGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNIAFMGTLVRCGNGKGIDLAIDES 77
+G L +D+S+ TGE+ P TK F G+ + G + + +A
Sbjct: 170 EGDPLKVDQSALTGESLPVTKHPG------------QEVFSGSTCKQGEIEAVVIATGVH 217
Query: 78 SFTGETEPATKVTSPMLKTNGHTSMRNI 105
+F G+ A V S + + I
Sbjct: 218 TFFGKA--AHLVDSTNQVGHFQKVLTAI 243
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.15
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 148 EKSEFGEV---FKMMQAEEAPKTPLQKSMD 174
EK ++ K+ + AP ++ +M+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.19
Identities = 45/221 (20%), Positives = 68/221 (30%), Gaps = 80/221 (36%)
Query: 8 LFFTKI-FR-----PSQGIDLAIDESSFT-GETEPATKVTSPMLKTNGHTSMRNIAFMGT 60
LFF I R P+ + +I E S E V SPML S+ N+
Sbjct: 303 LFF--IGVRCYEAYPNTSLPPSILEDSLENNEG-----VPSPML------SISNLTQ--- 346
Query: 61 LVRCGNGKGIDLAIDESSFTGETEPATKVTSPMLKTNGHTSMRNI----------AFMGT 110
+ + +++ T PA K L NG +N+ T
Sbjct: 347 -------EQVQDYVNK---TNSHLPAGKQVEISLV-NGA---KNLVVSGPPQSLYGLNLT 392
Query: 111 L--VRCGNGKAQLNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMMQAEEAP-KT 167
L + +G Q S I + ER K N F V +P +
Sbjct: 393 LRKAKAPSGLDQ--------SRIPFSER---KLKFSN-----RFLPVA-------SPFHS 429
Query: 168 P-LQKSMDILGTQLSLYSFCIIGLIMLLGWFQGRPVLDMFT 207
L + D++ L + + + PV D F
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQI------PVYDTFD 464
Score = 31.6 bits (71), Expect = 0.28
Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 37/127 (29%)
Query: 125 EDYTSMINYKERLIEKG-------VVVNTGEKSEFGEVFKMMQAEEAP-KTPLQKSMDIL 176
+ Y ++ LI+ + + F + +++ E P TP D L
Sbjct: 178 QTYHVLV---GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP---DKDYL 231
Query: 177 GTQLSLYSFCIIGLIML---------LGWFQGRP--VLDMFTIGVSLAVAAIPEGLPIVV 225
+ S +IG+I L LG+ P + G + +V
Sbjct: 232 LS--IPISCPLIGVIQLAHYVVTAKLLGF---TPGELRSYLK-GATGHSQG------LVT 279
Query: 226 TVTLALG 232
V +A
Sbjct: 280 AVAIAET 286
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif,
RNA-modifying enzyme, lyase; 1.50A {Escherichia coli}
SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Length = 264
Score = 28.6 bits (65), Expect = 1.6
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 103 RNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKER 136
RNI +G+L+ G ++ K+R
Sbjct: 199 RNI--VGSLMEVGAHNQP---ESWIAELLAAKDR 227
Score = 26.7 bits (60), Expect = 7.6
Identities = 6/16 (37%), Positives = 9/16 (56%), Gaps = 2/16 (12%)
Query: 53 RNIAFMGTLVRCGNGK 68
RNI +G+L+ G
Sbjct: 199 RNI--VGSLMEVGAHN 212
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural
NPPSFA, national project on protein structural and
function analyses; 2.25A {Thermus thermophilus}
Length = 249
Score = 28.2 bits (64), Expect = 1.9
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 103 RNIAFMGTLVRCGNGKAQLNHPEDYTSMINYKER 136
R + +GTL+ G GK PE +++ +R
Sbjct: 199 RGM--VGTLLEVGLGKRP---PESLKAILKTADR 227
Score = 26.7 bits (60), Expect = 6.3
Identities = 7/16 (43%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 53 RNIAFMGTLVRCGNGK 68
R + +GTL+ G GK
Sbjct: 199 RGM--VGTLLEVGLGK 212
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 27.3 bits (61), Expect = 4.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 189 GLIMLLGWFQGRPVLD 204
++M GW G P+LD
Sbjct: 181 AIVMRSGWQPGTPLLD 196
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 26.3 bits (59), Expect = 9.0
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 124 PEDYTSMINYKERLIEKGVVVNTGEKSEFGE 154
PE + + RL+E+GV + G FG
Sbjct: 320 PEGVDDL-EFGLRLVERGVALAPG--RGFGP 347
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.391
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,574,991
Number of extensions: 212603
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 21
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)