RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15159
         (238 letters)



>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 69.7 bits (170), Expect = 2e-14
 Identities = 38/99 (38%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 148 EKSEFGEVFKMMQAEEAPKTPLQKSMDILGTQLSLYSF--CIIGLIMLLGWFQ------- 198
           E +          A E  KTPLQ+ +D  G QLS      C+   ++ +G F        
Sbjct: 113 ENAIEALKEYEPAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGS 172

Query: 199 -GRPVLDMFTIGVSLAVAAIPEGLPIVVTVTLALGVMRI 236
             R  +  F I V+LAVAAIPEGLP V+T  LALG  R+
Sbjct: 173 WIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRM 211


>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A
           {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 115

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 23/99 (23%)

Query: 62  VRCGNGKGIDLAIDESSFTGETEPATKVTSP-MLKTNGHTSMRNIAFMGTLVRCGNGKAQ 120
           +R  + K   L +D+S  TGE+    K T P       +   +N+ F GT +  G     
Sbjct: 39  IRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAL-- 96

Query: 121 LNHPEDYTSMINYKERLIEKGVVVNTGEKSEFGEVFKMM 159
                               G+V  TG  +E G++   M
Sbjct: 97  --------------------GIVATTGVSTEIGKIRDQM 115



 Score = 28.9 bits (64), Expect = 0.19
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 21  DLAIDESSFTGETEPATKVTSP-MLKTNGHTSMRNIAFMGTLVRCGNGKGIDLAIDESSF 79
            L +D+S  TGE+    K T P       +   +N+ F GT +  G   GI      S+ 
Sbjct: 48  TLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTE 107

Query: 80  TG 81
            G
Sbjct: 108 IG 109


>d2ilka_ a.26.1.3 (A:) Interleukin-10 (cytokine synthesis inhibitory
           factor, CSIF) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 155

 Score = 27.0 bits (60), Expect = 1.3
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 8/65 (12%)

Query: 92  PMLKTNGHTSMRNIAFMG--------TLVRCGNGKAQLNHPEDYTSMINYKERLIEKGVV 143
           P  +        ++  +G         L RC       N  +    + N   +L EKG+ 
Sbjct: 73  PQAENQDPDIKAHVNSLGENLKTLRLRLRRCHRFLPCENKSKAVEQVKNAFNKLQEKGIY 132

Query: 144 VNTGE 148
               E
Sbjct: 133 KAMSE 137


>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 743

 Score = 26.3 bits (58), Expect = 3.6
 Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 5/25 (20%)

Query: 178 TQLSLYSFCIIGLIM-----LLGWF 197
            +  LY   I GL+M       GWF
Sbjct: 142 NEFQLYCTAIGGLVMAGLMLFAGWF 166


>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor,
           catalytic domain {Escherichia coli [TaxId: 562]}
          Length = 295

 Score = 26.0 bits (57), Expect = 4.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 207 TIGVSLAVAAIPEGLPIVVT 226
             G+ +A+  + EG P+++T
Sbjct: 121 ANGIKIALEEVQEGKPVIIT 140


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 847,922
Number of extensions: 37576
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 7
Length of query: 238
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 155
Effective length of database: 1,268,006
Effective search space: 196540930
Effective search space used: 196540930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)