BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15160
(366 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CSU0|RPR1B_MOUSE Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus
musculus GN=Rprd1b PE=1 SV=2
Length = 326
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 101/166 (60%), Gaps = 5/166 (3%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F++SAL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ +EF VL AF V E + L R+LNIW+ER VY
Sbjct: 61 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAR-EADEGCKKPLERLLNIWQERSVYGG 119
Query: 121 QQIASFRTAFNAALEPQTK----RRKLSESNTEVLYDVDGNVPIGY 162
+ I + + + P K ++ L + ++ + D + P Y
Sbjct: 120 EFIQQLKLSMEDSKSPPPKAAEEKKSLKRTFQQIQEEEDDDYPGSY 165
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 86/180 (47%), Gaps = 39/180 (21%)
Query: 193 EKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTKRRKLSES------------ 240
E + L R+LNIW+ER VY + I + + + P K + +S
Sbjct: 98 EGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKSPPPKAAEEKKSLKRTFQQIQEEE 157
Query: 241 -------------------NTEVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKV 281
E++ + +LE +AS DA +R+KIA LP EV ++ LL K+
Sbjct: 158 DDDYPGSYSPQDPSAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKI 217
Query: 282 QGKNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELL 341
D+ AAE LS V+EA LL YN RL E+EDR++ + ML +Y Q+E+L
Sbjct: 218 T--------DKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKEVL 269
>sp|Q9NQG5|RPR1B_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo
sapiens GN=RPRD1B PE=1 SV=1
Length = 326
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 101/166 (60%), Gaps = 5/166 (3%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F++SAL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSSFSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ +EF VL AF V E + L R+LNIW+ER VY
Sbjct: 61 YLANDVIQNSKRKGPEFTREFESVLVDAFSHVAR-EADEGCKKPLERLLNIWQERSVYGG 119
Query: 121 QQIASFRTAFNAALEPQTK----RRKLSESNTEVLYDVDGNVPIGY 162
+ I + + + P K ++ L + ++ + D + P Y
Sbjct: 120 EFIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSY 165
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 39/180 (21%)
Query: 193 EKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTKRRKLSES------------ 240
E + L R+LNIW+ER VY + I + + + P K + +S
Sbjct: 98 EGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEE 157
Query: 241 -------------------NTEVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKV 281
E++ + +LE +AS DA +R+KIA LP EV ++ LL K+
Sbjct: 158 DDDYPGSYSPQDPSAGPLLTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKI 217
Query: 282 QGKNITGQPDRVAAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELL 341
D+ AAE LS V+EA LL YN RL E+EDR++ + ML +Y Q+++L
Sbjct: 218 T--------DKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVL 269
>sp|Q5R8Y3|RPR1A_PONAB Regulation of nuclear pre-mRNA domain-containing protein 1A
OS=Pongo abelii GN=RPRD1A PE=2 SV=1
Length = 312
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F+++AL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ K+F V+ +AF V E + L R+L+IWEER VY+
Sbjct: 61 YLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSS-ETDESCKKHLGRVLSIWEERSVYEN 119
Query: 121 QQIASFRTAFNAALEPQTK 139
+ + A +P+ +
Sbjct: 120 DVLEQLKQALYGDKKPRKR 138
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 25/174 (14%)
Query: 193 EKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTK---RRKLSESNT------- 242
E + L R+L+IWEER VY+ + + A +P+ + + K+ E+
Sbjct: 98 ESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPRKRTYEQIKVDENENCSSLGSP 157
Query: 243 -------EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAA 295
+++ + +LE +AS DA + ++IA LP EV E+ LL K+ D+ +
Sbjct: 158 SEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKIT--------DKESG 209
Query: 296 ENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLE 349
E LS V +A LL +YN RL E++DRK+ + ML D++ Q+E L + E +LE
Sbjct: 210 ERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLE 263
>sp|Q96P16|RPR1A_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo
sapiens GN=RPRD1A PE=1 SV=1
Length = 312
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F+++AL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ K+F V+ +AF V E + L R+L+IWEER VY+
Sbjct: 61 YLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSS-ETDESCKKHLGRVLSIWEERSVYEN 119
Query: 121 QQIASFRTAFNAALEPQTK 139
+ + A +P+ +
Sbjct: 120 DVLEQLKQALYGDKKPRKR 138
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 25/174 (14%)
Query: 193 EKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTK---RRKLSESNT------- 242
E + L R+L+IWEER VY+ + + A +P+ + + K+ E+
Sbjct: 98 ESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPRKRTYEQIKVDENENCSSLGSP 157
Query: 243 -------EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAA 295
+++ + +LE +AS DA + ++IA LP EV E+ LL K+ D+ +
Sbjct: 158 SEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKIT--------DKESG 209
Query: 296 ENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLE 349
E LS V +A LL +YN RL E++DRK+ + ML D++ Q+E L + E +LE
Sbjct: 210 ERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLE 263
>sp|Q0P5J9|RPR1A_BOVIN Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos
taurus GN=RPRD1A PE=2 SV=2
Length = 312
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F+++AL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ K+F V+ +AF V E + L R+L+IWEER VY+
Sbjct: 61 YLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSS-ETDESCKKHLGRVLSIWEERSVYEN 119
Query: 121 QQIASFRTAFNAALEPQTK 139
+ + A +P+ +
Sbjct: 120 DVLEQLKQALYGDKKPRKR 138
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 25/174 (14%)
Query: 193 EKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTK---RRKLSESNT------- 242
E + L R+L+IWEER VY+ + + A +P+ + + K+ E+
Sbjct: 98 ESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPRKRTYEQIKVDENENCSSLGSP 157
Query: 243 -------EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAA 295
+++ + +LE +AS DA + ++IA LP EV E+ LL K+ D+ +
Sbjct: 158 SEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKIT--------DKESG 209
Query: 296 ENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLE 349
E LS V +A LL +YN RL E++DRK+ + ML D++ Q+E L + E +LE
Sbjct: 210 ERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLE 263
>sp|Q8VDS4|RPR1A_MOUSE Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Mus
musculus GN=Rprd1a PE=2 SV=1
Length = 312
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 88/130 (67%), Gaps = 1/130 (0%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F+++AL KL EL+ SQQS+QTLSLWLIHHRKH IV W E+ KA +RKLT +
Sbjct: 1 MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ K+F V+ +AF V E + L R+L+IWEER VY+
Sbjct: 61 YLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSS-ETDESCKKHLGRVLSIWEERSVYEN 119
Query: 121 QQIASFRTAF 130
+ + A
Sbjct: 120 DVLEQLKHAL 129
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 29/176 (16%)
Query: 193 EKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTKRR-----KLSESNT----- 242
E + L R+L+IWEER VY+ + + A + + ++R K+ E+
Sbjct: 98 ESCKKHLGRVLSIWEERSVYENDVLEQLKHALYG--DKKARKRTYEQIKVDENENCSSLG 155
Query: 243 ---------EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRV 293
+++ + +LE +AS DA + ++IA LP EV E+ LL K+ D+
Sbjct: 156 SPSEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLEKIT--------DKE 207
Query: 294 AAENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLE 349
+ E LS V +A LL +YN RL E++DRK+ + ML D++ Q+E L + E +LE
Sbjct: 208 SGERLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLE 263
>sp|Q5ZM30|RPR1A_CHICK Regulation of nuclear pre-mRNA domain-containing protein 1A
OS=Gallus gallus GN=RPRD1A PE=2 SV=1
Length = 268
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 88/130 (67%), Gaps = 1/130 (0%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLM 60
M+ F+++AL KL EL+ SQQS+QTLSLWLIHHRKH + IV W E+ KA +RKLT +
Sbjct: 1 MSAFSEAALERKLSELSNSQQSVQTLSLWLIHHRKHSALIVSVWERELRKAKPNRKLTFL 60
Query: 61 YLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
YLANDVIQNSK+KGPE+ K+F V+ +AF V E + R+L+IWEER VY+
Sbjct: 61 YLANDVIQNSKRKGPEFTKDFAPVIVEAFKHVSS-ESDESCKKHPGRVLSIWEERSVYEN 119
Query: 121 QQIASFRTAF 130
+ R A
Sbjct: 120 DVLEQLRQAL 129
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 97/184 (52%), Gaps = 31/184 (16%)
Query: 193 EKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTKRR-----KLSESNT----- 242
E + R+L+IWEER VY+ + R A + + ++R K+ E+N
Sbjct: 98 ESCKKHPGRVLSIWEERSVYENDVLEQLRQALYG--DRKVRKRTYEQIKVDENNCSPRSS 155
Query: 243 --------EVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVA 294
+++ + ELE +AS DA + ++IA LP EV ++ LL ++ D+ +
Sbjct: 156 PTDPPQTMDLIRALQELENAASGDAAVHQRIASLPIEVQDVSLLDRIT--------DKES 207
Query: 295 AENLSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQRLEVSETE 354
E LS V++A LL +YN RL E++DRK+ + ML D++ Q+E L + E +LEV
Sbjct: 208 GEQLSKMVDDACMLLADYNGRLAAEIDDRKQLTRMLSDFLRCQKEFLAEKEHKLEV---R 264
Query: 355 IFLF 358
I LF
Sbjct: 265 IVLF 268
>sp|Q5VT52|RPRD2_HUMAN Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Homo
sapiens GN=RPRD2 PE=1 SV=1
Length = 1461
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 12 KLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSK 71
K + + + +SIQ LS W I ++KHHSTIV W+ + ++ +L L YLANDVIQN K
Sbjct: 30 KFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCK 89
Query: 72 KKGPEYGKE-FGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAF 130
+K +E F VL +A V D S+ S+ RI IWE+R VY ++ I + R A
Sbjct: 90 RKNAIIFRESFADVLPEAAALVKDPSVSK----SVERIFKIWEDRNVYPEEMIVALREAL 145
Query: 131 NAALEPQ 137
+ + Q
Sbjct: 146 STTFKTQ 152
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 198 SLSRILNIWEERGVYDKQQIASFRTAFNAALEPQ 231
S+ RI IWE+R VY ++ I + R A + + Q
Sbjct: 119 SVERIFKIWEDRNVYPEEMIVALREALSTTFKTQ 152
>sp|Q6NXI6|RPRD2_MOUSE Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Mus
musculus GN=Rprd2 PE=1 SV=1
Length = 1469
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 12 KLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQNSK 71
K + + + +SIQ LS W I ++KHHSTIV W+ + ++ +L L YLANDVIQN K
Sbjct: 30 KFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCK 89
Query: 72 KKGPEYGKE-FGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAF 130
+K +E F VL +A V D S+ S+ RI IWE+R VY + I + R A
Sbjct: 90 RKNAIIFRESFADVLPEAAALVKDPSVSK----SIERIFKIWEDRNVYPEDMIVALREAL 145
>sp|A8WLG6|CIDS1_CAEBR CID domain-containing protein 1 OS=Caenorhabditis briggsae
GN=cids-1 PE=4 SV=1
Length = 311
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLT-L 59
M+ FT+ L KL L+ SIQT S WL+ + + I++ W+ V K + K+ L
Sbjct: 1 MSDFTEQTLRQKLANLSNHSNSIQTTSSWLLKNHNNREIIIRVWLKTVRKENKGAKVVNL 60
Query: 60 MYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSE----KTRSSLSRILNIWEER 115
+Y+ANDV QN++K P++ +F ++ AF HC E + +++ +++++W+ER
Sbjct: 61 LYVANDVAQNARKACPQFKDDFFPAIESAF-----RHCCELKAKEVENAIGKLIHVWKER 115
Query: 116 GVYDKQQIASFRTA 129
+Y + Q + A
Sbjct: 116 QIYSQSQCKRLQEA 129
>sp|P34281|CIDS1_CAEEL CID domain-containing protein 1 OS=Caenorhabditis elegans GN=cids-1
PE=4 SV=2
Length = 315
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 1 MAGFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLT-L 59
MA FT+ L KL L+ SIQT S WL+ + + I++ W+ V+K K+ L
Sbjct: 1 MADFTEQTLRQKLTNLSNHPSSIQTTSAWLLQNHSNRELIIRVWLKTVKKETHGSKIVNL 60
Query: 60 MYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYD 119
+Y+ANDV QN++K P++ EF ++ +F ++ +++ ++ +++N+W++R ++
Sbjct: 61 LYVANDVSQNARKTCPQFKDEFFPAIESSFRHAIELKNAKEVEHAIGKLINVWKDRQIFT 120
Query: 120 KQQI 123
Q
Sbjct: 121 PSQC 124
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 28/169 (16%)
Query: 198 SLSRILNIWEERGVYDKQQI-------------ASFRTAFNA-------ALEPQTKRRKL 237
++ +++N+W++R ++ Q SF T A A Q +
Sbjct: 105 AIGKLINVWKDRQIFTPSQCKRLHEVHQQVKLSGSFPTPAVANKEHGKVAQPSQFVVEEA 164
Query: 238 SESNTEVLYDVDELETSASSDANIREKIAKLPPEVSEIQLLSKVQGKNITGQPDRVAAEN 297
++ +VL + L+ S++ IR +++K P +S + L V+ A++
Sbjct: 165 KKNAQDVLLSLKRLQNPPSTEREIRTELSKYPDNISCPEKLQSVRSSQ--------EAQS 216
Query: 298 LSIQVNEAVDLLTNYNTRLVTEMEDRKRASAMLKDYIAAQRELLEQAEQ 346
L +Q EA+ +L Y RL E +R+ + L I R +E E+
Sbjct: 217 LLVQNEEALPMLEEYVKRLKNETNERETLESNLNMLIENVRMSIEHHEK 265
>sp|O74814|YJ03_SCHPO UPF0400 protein C337.03 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPBC337.03 PE=1 SV=1
Length = 387
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 3 GFTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYL 62
T + SKL LN +Q+SI ++ W++ H+++ IV+ W++ + ++ ++KL L+YL
Sbjct: 2 ALTPDTVSSKLATLNETQESITGIAHWVMFHKRYADEIVQIWLEALYESSSNKKLLLLYL 61
Query: 63 ANDVIQNSK-KKGPEYGKEFGHVLKQAFVSVGDVHCS--EKTRSSLSRILNIWEERGVYD 119
N+V+Q S+ KK EY V SV D + S ++ + + ++W +RG++
Sbjct: 62 LNEVVQQSRVKKISEY---IDAVSPYVVNSVADAYASVPASIKTKIKYVFDVWCQRGIFS 118
Query: 120 KQQIASFRTAFNAA 133
K+ + S + FN A
Sbjct: 119 KEILLSLQERFNNA 132
>sp|Q05543|RT103_YEAST Regulator of Ty1 transposition protein 103 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RTT103 PE=1
SV=1
Length = 409
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 4 FTQSALISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEV--EKADDHRKLTLMY 61
F+ +KL L SQ+SI + S WL+ + + + W + + + RKL +Y
Sbjct: 3 FSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLY 62
Query: 62 LANDVIQNSK-KKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDK 120
L N V+Q +K +K ++ FG V + + + LSR++NI +ER ++ K
Sbjct: 63 LMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQ-EFPRDLKKKLSRVVNILKERNIFSK 121
Query: 121 QQIASFRTAFNAALEP 136
Q + + P
Sbjct: 122 QVVNDIERSLKTESSP 137
>sp|O95104|SFR15_HUMAN Splicing factor, arginine/serine-rich 15 OS=Homo sapiens GN=SCAF4
PE=1 SV=3
Length = 1147
Score = 35.8 bits (81), Expect = 0.60, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 57/117 (48%), Gaps = 22/117 (18%)
Query: 10 ISKLEELNASQQSIQTLSLWLIHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLANDVIQN 69
IS+ + + ++ +I+ + L+ KH IV+ +I +K K+ +Y+ + +++
Sbjct: 21 ISRAKMILITKAAIKAIKLY-----KHVVQIVEKFI---KKCKPEYKVPGLYVIDSIVRQ 72
Query: 70 SKKK--------GPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVY 118
S+ + GP + K + ++ C + +S + R+LN+W++ GV+
Sbjct: 73 SRHQFGTDKDVFGPRFSKNITATFQYLYL------CPSEDKSKIVRVLNLWQKNGVF 123
>sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus
GN=Cherp PE=1 SV=1
Length = 936
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 56 KLTLMYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCS------EKTRSSLSRIL 109
+L L+YL NDV+ + ++K +E L++ V + +C+ E + ++R+L
Sbjct: 211 RLHLIYLINDVLHHCQRK---QARELLAALQKVVVPI---YCTSFLAVEEDKQQKIARLL 264
Query: 110 NIWEERGVYDKQQIASFRTA 129
+WE+ G +D I ++
Sbjct: 265 QLWEKNGYFDDSIIQQLQSP 284
>sp|Q8IWX8|CHERP_HUMAN Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens
GN=CHERP PE=1 SV=3
Length = 916
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 56 KLTLMYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCS------EKTRSSLSRIL 109
+L L+YL NDV+ + ++K +E L++ V + +C+ E + ++R+L
Sbjct: 211 RLHLIYLINDVLHHCQRK---QARELLAALQKVVVPI---YCTSFLAVEEDKQQKIARLL 264
Query: 110 NIWEERGVYDKQQIASFRTA 129
+WE+ G +D I ++
Sbjct: 265 QLWEKNGYFDDSIIQQLQSP 284
>sp|Q5VST9|OBSCN_HUMAN Obscurin OS=Homo sapiens GN=OBSCN PE=1 SV=3
Length = 7968
Score = 33.5 bits (75), Expect = 2.7, Method: Composition-based stats.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 5/182 (2%)
Query: 84 VLKQAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAALEPQTKRRKL 143
V++QA + + E LS L++ E + V+ K Q+A A T ++
Sbjct: 948 VVQQAGQADAGEYSCEAGGQRLSFHLDVKEPKVVFAKDQVAHSEVQAEAGASA-TLSCEV 1006
Query: 144 SESNTEVLYDVDGNVPIGYFTFFHIDGKGRRNKYDKKQA-FVSVGDVHCSEKTRSSLSRI 202
+++ TEV++ DG + H++ KG R + +QA GD C E +S
Sbjct: 1007 AQAQTEVMWYKDGK-KLSSSLKVHVEAKGCRRRLVVQQAGKTDAGDYSC-EARGQRVSFR 1064
Query: 203 LNIWEERGVYDKQQIASFRTAFNAALEPQTKRRKLSESNTEVLYDVDELETSASSDANIR 262
L+I E + ++ K+Q A +++++ TEV + D + S+SS +
Sbjct: 1065 LHITEPKMMFAKEQSVHNEVQAEAGASAMLS-CEVAQAQTEVTWYKDGKKLSSSSKVGME 1123
Query: 263 EK 264
K
Sbjct: 1124 VK 1125
>sp|A6VYK6|RSMH_MARMS Ribosomal RNA small subunit methyltransferase H OS=Marinomonas sp.
(strain MWYL1) GN=rsmH PE=3 SV=1
Length = 312
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 15/74 (20%)
Query: 292 RVAAENLSIQVNEAVDLL-TNYN-------------TRLVTEMEDRKRASAMLKDYIA-A 336
+ AE++S+ +NE+VD+L T+ N TRLV + D+ R KD +A
Sbjct: 3 KTMAEHISVMLNESVDMLVTDTNGLYVDGTFGRGGHTRLVLDRLDKGRLLGFDKDPVAIG 62
Query: 337 QRELLEQAEQRLEV 350
+LLEQ + R +
Sbjct: 63 HGKLLEQEDARFSI 76
>sp|Q9P793|MIT1_SCHPO Chromatin remodeling factor mit1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mit1 PE=1 SV=1
Length = 1418
Score = 32.3 bits (72), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 8 ALISKLEELNASQQSIQTLSLWLIH--HRKHHSTIVKTWIDEVEKADDHRKLTLMYLAND 65
ALI K +EL+ + L +WL H +++H + T DE EK D L +
Sbjct: 53 ALIKK-DELDKYKNGKACLRVWLKHKSRKRYHGYMTSTDKDEEEKND----YLLKSNGSK 107
Query: 66 VIQNSKK-KGPEYGKEFGHVLKQAFVS 91
V+++S + K ++GKEF L +FVS
Sbjct: 108 VLRDSTRTKKFKFGKEFHCALNPSFVS 134
>sp|Q59519|SODM_MYCFO Superoxide dismutase [Mn] OS=Mycobacterium fortuitum GN=sodA PE=3
SV=2
Length = 207
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 59/150 (39%), Gaps = 27/150 (18%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLAND----VIQNSKKKGPEYGKEFGHVLK 86
+HH KHH+ VK D V K D+ R AN + N K G GHV
Sbjct: 27 LHHSKHHAAYVKGVNDAVAKLDEAR-------ANGDHAAIFLNEKNLAFHLG---GHVNH 76
Query: 87 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFN-------AALEPQTK 139
+ + +K L+ ++ ++ G +DK Q A F A N A L +
Sbjct: 77 SIWWKNLSPNGGDKPTGDLAAAID--DQFGSFDKFQ-AQFTAAANGLQGSGWAVLGYDSL 133
Query: 140 RRKLSESNTEVLYDVDGNVPIGYFTFFHID 169
+L T LYD NVP+G +D
Sbjct: 134 GDRLL---TFQLYDQQANVPLGIIPLLQVD 160
>sp|Q6FQ33|CWC23_CANGA Pre-mRNA-splicing factor CWC23 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CWC23 PE=3 SV=1
Length = 296
Score = 32.0 bits (71), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 84/222 (37%), Gaps = 59/222 (26%)
Query: 54 HRKLTLMYLANDVIQNSKKKGPEYGKEFGHVLKQAFVSVGDVHCSEKTRSSLSRILNIWE 113
+RKL+L Y K GPEY F H+L A + D
Sbjct: 42 YRKLSLRY------HPDKNPGPEYIDRF-HLLNLAITVLADP-----------------A 77
Query: 114 ERGVYDKQQIASFRTAFNAALEPQTKRR-----KLSESNTEVLYDVDGNVPIGYFTFFHI 168
++ YD Q +A + N E + RR KL+ S +V D G ++
Sbjct: 78 KKAEYD-QWVAQYLYPDNGLSEAEQTRREALVQKLNASERKVREDNQGG---------NV 127
Query: 169 DGKGRRNKYDKK---QAFVSVG-------DVHCSEKTRSSLSRILN---IWEERGVYDKQ 215
G+ Y +K A +G D H S T +++ + R V+D Q
Sbjct: 128 ADIGKIQNYGEKLRRMAHFGLGFGDWRNLDEHISRATTNTIEDSTTDKEVCTLRAVFDFQ 187
Query: 216 QIASFRTAFNAALEPQTKRRKLSESNTEVLYDVDELETSASS 257
I + +P RR ++E E +YD+DE+ S+++
Sbjct: 188 SIENIS-------DPNNLRRYMNEVFPEYMYDIDEIRYSSNN 222
>sp|P50913|SODM_MYCSC Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium scrofulaceum
GN=sodA PE=3 SV=1
Length = 163
Score = 32.0 bits (71), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 58/154 (37%), Gaps = 35/154 (22%)
Query: 31 IHHRKHHSTIVKTWIDEVEKADDHRKLTLMYLAND----VIQNSKKKGPEYGKEFGHVLK 86
+HH KHH+T VK D V K + R AND + N K G GHV
Sbjct: 1 LHHSKHHATYVKGVNDAVAKLQEAR-------ANDDHAAIFLNEKNLAFHLG---GHVNH 50
Query: 87 QAFVSVGDVHCSEKTRSSLSRILNIWEERGVYDKQQIASFRTAFNAA-----------LE 135
+ +K L+ ++ + G +DK FR F+AA L
Sbjct: 51 SIWWKNLSPDGGDKPTGELAAAID--DAFGSFDK-----FRAQFSAAANGLQGSGWAVLG 103
Query: 136 PQTKRRKLSESNTEVLYDVDGNVPIGYFTFFHID 169
T +L T LYD NVP+G +D
Sbjct: 104 YDTLGSRLL---TFQLYDQQANVPLGIIPLLQVD 134
>sp|Q91FD1|ICP46_IIV6 Immediate-early protein ICP-46 homolog OS=Invertebrate iridescent
virus 6 GN=IIV6-393L PE=3 SV=1
Length = 454
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 142 KLSESNTEVLYDVDGNVPIGYFTFFHIDGKGRRNKYDKKQAFVSVGDVHCSEKTRSSLSR 201
KL + +DV GN+P F + HI G +NK + +S D+ EK ++
Sbjct: 288 KLVNKTYQEYFDVRGNIPSVPFAYLHI--LGNKNKIQMFKQMISEKDIETIEKYEKTIQE 345
Query: 202 IL----NIWEERGVYDKQQIASFRTAFNAALE 229
++ N++ +R V ++ + +T LE
Sbjct: 346 LIVELHNLYLKRYVEKDTEMKTDKTKHKFLLE 377
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,894,348
Number of Sequences: 539616
Number of extensions: 4656990
Number of successful extensions: 17639
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 17478
Number of HSP's gapped (non-prelim): 295
length of query: 366
length of database: 191,569,459
effective HSP length: 119
effective length of query: 247
effective length of database: 127,355,155
effective search space: 31456723285
effective search space used: 31456723285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 62 (28.5 bits)